CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_AP022582	Mycobacterium seoulense strain JCM 16018	4 crisprs	csa3,WYL,cas4,DEDDh,DinG,cas3	1	2	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_AP022582_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022582_1

1766671-1766768

Orphan

Consensus_repeat	Method
TGCCGACCGCTCGGTGTCGGGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP022582_1

>merge|NZ_AP022582|1|1766671-1766768|CRISPRCasFinder
TGCCGACCGCTCGGTGTCGGGCCACAACCCTTGGCGTGTGACCCGGGGCAATGGTGGGACCCGACGGCTAATGTATGCCGGCCGCTCGGTGTCGGGCC

>NZ_AP022582|1|1|1766671-1766768|CRISPRCasFinder
TGCCGACCGCTCGGTGTCGGGCC	ACAACCCTTGGCGTGTGACCCGGGGCAATGGTGGGACCCGACGGCTAATGTA
TGCCGGCCGCTCGGTGTCGGGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022582.1\|WP_163678424.1\|1770395_1770872_+\|DUF1772-domain-containing-protein	unknown	unknown	gnl\|CDD\|378020
NZ_AP022582.1\|WP_163684750.1\|1765682_1766381_-\|DUF899-family-protein	unknown	unknown	gnl\|CDD\|377584
NZ_AP022582.1\|WP_163678440.1\|1775706_1776525_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_AP022582.1\|WP_163678411.1\|1766879_1767110_+\|DUF167-domain-containing-protein	unknown	unknown	gnl\|CDD\|224784
NZ_AP022582.1\|WP_163678435.1\|1771941_1773099_+\|hydroxyneurosporene-methyltransferase	unknown	unknown	gnl\|CDD\|366359
NZ_AP022582.1\|WP_163678432.1\|1771262_1771643_+\|DUF4267-domain-containing-protein	unknown	unknown	gnl\|CDD\|372907
NZ_AP022582.1\|WP_163678402.1\|1761841_1762402_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|223619
NZ_AP022582.1\|WP_163678390.1\|1755594_1756830_+\|osmoprotectant-NAGGN-system-M42-family-peptidase	unknown	unknown	gnl\|CDD\|132150
NZ_AP022582.1\|WP_163678399.1\|1760098_1761160_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022582.1\|WP_163678407.1\|1763391_1765668_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NZ_AP022582.1\|WP_163678401.1\|1761372_1761816_+\|SnoaL-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|378915
NZ_AP022582.1\|WP_163678395.1\|1757667_1758351_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378566
NZ_AP022582.1\|WP_163678414.1\|1767225_1768035_+\|PPOX-class-F420-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274712
NZ_AP022582.1\|WP_163678404.1\|1762848_1763205_+\|DUF732-domain-containing-protein	unknown	unknown	gnl\|CDD\|368380
NZ_AP022582.1\|WP_167527423.1\|1773366_1775610_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NZ_AP022582.1\|WP_163678428.1\|1770924_1771266_+\|NIPSNAP-domain-containing-protein	unknown	unknown	gnl\|CDD\|311781
NZ_AP022582.1\|WP_163678397.1\|1758623_1760057_+\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|223354
NZ_AP022582.1\|WP_163678420.1\|1769706_1770297_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379115
NZ_AP022582.1\|WP_163678393.1\|1756841_1757615_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|369777
NZ_AP022582.1\|WP_163678417.1\|1768080_1769622_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_AP022582.1\|WP_163678424.1\|1770395_1770872_+\|DUF1772-domain-containing-protein	gnl\|CDD\|378020	pfam08592, DUF1772, Domain of unknown function (DUF1772). This domain is of unknown function.	0.00622215
NZ_AP022582.1\|WP_163678414.1\|1767225_1768035_+\|PPOX-class-F420-dependent-oxidoreductase	gnl\|CDD\|274712	TIGR03666, Rv2061_F420, PPOX class probable F420-dependent enzyme, Rv2061 family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN. [Unknown function, Enzymes of unknown specificity].	2.82127e-33
NZ_AP022582.1\|WP_163684750.1\|1765682_1766381_-\|DUF899-family-protein	gnl\|CDD\|377584	pfam05988, DUF899, Bacterial protein of unknown function (DUF899). This family consists of several uncharacterized bacterial proteins of unknown function.	1.23412e-68
NZ_AP022582.1\|WP_163678411.1\|1766879_1767110_+\|DUF167-domain-containing-protein	gnl\|CDD\|224784	COG1872, COG1872, Uncharacterized conserved protein [Function unknown].	4.01072e-22
NZ_AP022582.1\|WP_163678435.1\|1771941_1773099_+\|hydroxyneurosporene-methyltransferase	gnl\|CDD\|366359	pfam00891, Methyltransf_2, O-methyltransferase. This family includes a range of O-methyltransferases. These enzymes utilize S-adenosyl methionine.	1.61025e-49
NZ_AP022582.1\|WP_163678432.1\|1771262_1771643_+\|DUF4267-domain-containing-protein	gnl\|CDD\|372907	pfam14087, DUF4267, Domain of unknown function (DUF4267). This family of integral membrane proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 126 and 142 amino acids in length.	5.07179e-19
NZ_AP022582.1\|WP_163678402.1\|1761841_1762402_-\|peptidylprolyl-isomerase	gnl\|CDD\|223619	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones].	2.02737e-20
NZ_AP022582.1\|WP_163678390.1\|1755594_1756830_+\|osmoprotectant-NAGGN-system-M42-family-peptidase	gnl\|CDD\|132150	TIGR03106, trio_M42_hydro, hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.	0
NZ_AP022582.1\|WP_163678407.1\|1763391_1765668_+\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	2.8102e-90
NZ_AP022582.1\|WP_163678401.1\|1761372_1761816_+\|SnoaL-like-domain-containing-protein	gnl\|CDD\|378915	pfam12680, SnoaL_2, SnoaL-like domain. This family contains a large number of proteins that share the SnoaL fold.	8.63876e-10
NZ_AP022582.1\|WP_163678395.1\|1757667_1758351_-\|hypothetical-protein	gnl\|CDD\|378566	pfam11139, SfLAP, Sap, sulfolipid-1-addressing protein. SAP is a transmembrane transport protein with six predicted transmembrane helices, with a hydrophilic domain between helices 3 and 4. This hyrodphobic region is highly variable among identified Gap-like (GPL, peptidoglycolipid, addressing protein) proteins and may be involved in substrate recognition. SAP also belongs to the LysE protein superfamily (pfam01810), whose members have been implicated in small molecule transport in bacteria. Other Gap proteins export metabolites across the cell membrane so it is possible that Sap specifically may be involved in transport of sulfolipid-1 across the membrane.	3.54268e-05
NZ_AP022582.1\|WP_163678404.1\|1762848_1763205_+\|DUF732-domain-containing-protein	gnl\|CDD\|368380	pfam05305, DUF732, Protein of unknown function (DUF732). This family consists of several uncharacterized Mycobacterium tuberculosis and leprae proteins of unknown function.	3.68397e-09
NZ_AP022582.1\|WP_167527423.1\|1773366_1775610_+\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	1.22569e-75
NZ_AP022582.1\|WP_163678428.1\|1770924_1771266_+\|NIPSNAP-domain-containing-protein	gnl\|CDD\|311781	pfam07978, NIPSNAP, NIPSNAP. Members of this family include many hypothetical proteins. It also includes members of the NIPSNAP family which have putative roles in vesicular transport. This domain is often found in duplicate.	1.27004e-10
NZ_AP022582.1\|WP_163678397.1\|1758623_1760057_+\|FAD-binding-protein	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	3.62699e-41
NZ_AP022582.1\|WP_163678420.1\|1769706_1770297_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|379115	pfam13305, WHG, WHG domain. This presumed domain is around 80 amino acids in length. It is found to the C-terminus of a DNA-binding helix-turn-helix domain. This domain may be involved in binding to an as yet unknown ligand that allows a transcriptional regulation response to that molecule. The domain is named WHG after three conserved residues near the C-terminus of the domain.	2.31648e-10
NZ_AP022582.1\|WP_163678393.1\|1756841_1757615_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	9.08827e-22
NZ_AP022582.1\|WP_163678440.1\|1775706_1776525_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	8.43978e-42

>NZ_AP022582.1|WP_163684750.1|1765682_1766381_-|DUF899-family-protein
MSSQHPALPPVVDQQTWRRALDELRKREKAATHELDAIAAQRRRLPMVELADYVLVGADGPIRLVDVFAGRSQLIVYHHMWSDGAEWQCGGCTGFTSQFTRLEFLENYDARFVIVTNGPIEEALAYKRKVGNRMEWYSSSESSFAADMDAPPGGGFGVNVFLRDGDTVYRTWHTNGRGTEQLSHTFGLIDILPWGRQEEWLDSPEGWPSRPTYSGWLGAPDIAAAYGPRDDS
>NZ_AP022582.1|WP_163678407.1|1763391_1765668_+|EAL-domain-containing-protein
MVVVLATIGLLVFAAMLFGASDASRRAVIASAGTVIGGIFATTCSLTAAYRSRGRQRFAWTVMSIALVGWTAGEAVWWYVAVGGVLPAADLSAANIGYLILPLGALVAALAIPSRDDSRFGIGLLLDGILITASLMVVIVLLPLGRTAYPSQTLSVPRILLATAAGVYVGLVAMSFIIVKKAEADRKLSPTLMTLGWGVIAATGIVHVYRDYAAQVPNDLVVLGWVGGMYFFALSGISSRPTPEVDLGFSRPSSRASVWLPYLPVLLAIIVGAVHFWPMYRGEGFIFLVCVVLFLTTLIRHVLLLDHKRRLLVAVSDAALRDPLTGLANQRLFDERLAHALRLHVQHSVPVSVLTVGVDDFRLVNDTLGYDVGDQLLRGVGERIQANVNDSHTVARMSGDEFAILVEDRPDVAVEVANGLARSFEEPVDIEDHSLDVRLSIGVASAGSELVTVPAPGDLLRRADAARSWARPASSTNVRVFTPEMDAQLGQAAAHDVAMARLQLLGELRRTIENGSLTLLYQPKFGMWTGNVTGVEALVRWQHPRFGVLGPDQFLPLVREHGLMDALTELVLWQAVADAAAWQAANAAIPVAINLGAPSLDKDALPDRIMFVLNTYAMSPTSLTIEITEDLVVADLAKARTVLNRLRENGIRVAIDDFGSGYATLTYLRELPADEVKLGREFVAPILHDERAATIARSVIELASGFGITSVAEGVEDYATAKRLKEYGCDAVQGNFFCPPLPASEIPRIPANSTLPAQ
>NZ_AP022582.1|WP_163678404.1|1762848_1763205_+|DUF732-domain-containing-protein
MPSLRWLAKVTVPLAAGAALVGGAAVASATTPQDEAYLAQLRAVGLSWPPQTEEALIGEAHLICYDLTWGWTPQQIADDVHAHLNARGVTLLDVGTMVDAAHSVYCPGNVCDAPSLCT
>NZ_AP022582.1|WP_163678402.1|1761841_1762402_-|peptidylprolyl-isomerase
MTAVKSSLVYSSVAACVAATVLAIAASGHATAAGSCPTAPPQGGGTPEWTLTGATGSVAVTGSTDTTAPRIDVTAPFSVTQTQVHTLHAGDGPVVPGTATVSVCYMGVNGRDGSVFDSSYQRGAPVDFPLNGVVPGFQKAIAGQKVGSTVAVAMTSADGYPNGQPSAGIRPGDSLVFAIKILSASG
>NZ_AP022582.1|WP_163678401.1|1761372_1761816_+|SnoaL-like-domain-containing-protein
MAKSVAAKNDNEKIVVDFIHAAYGESMDTDAMTALMADDFVWQLHVPLSPVVRGRDAARAELEKHNTLSTGMVEGSEIRTIVSDGDTVVVERVDVNAMNGVTVTFYVTAFFGVRDGAITYWREYWDTTHVAQQLGIDPALMFAPLSS
>NZ_AP022582.1|WP_163678399.1|1760098_1761160_+|hypothetical-protein
MTNAVKVTLNRSSVAMGDDVESHRVFWVFPASATVDDLLVEISHYVPGVAGPAGWIADVNTDDQMRRRDLGLIYTRDDLRQEDLVCRLVPGRTTLGDLVRWAKIPDLDVYVRYLTWDMGRPLTLSEVTAGPTYTGVQPTKLQSEAEAEAETDWVLVRELDRRAAAVAAARRDWIRTNVVSGATPPPGTDVFIARNFHYLADLHCPASMEVAAQLLGTDEAVYESLEATNDFDTRPAMVTLAMVLAAFEWNTARGSWQAEGRRYLKPYFEYLAGCGYGLSPIEQVMTGHLAVEQLKLSAGDTARLNRIRQLRDLQYRLRMNRYYNKTLTDDQYRAAISSVHAELSDLGEVPGPM
>NZ_AP022582.1|WP_163678397.1|1758623_1760057_+|FAD-binding-protein
MAREFSRQTFLRGTAGAFAAGAVFGSARATAAPNPTGWEGLSTAIGGQVLLPDNGAFGSAKQVFNTNYDGLTPAAIVAPASPADVQKAMAFAAAHNLKVAPRSGGHSYIGASTANGVMVLDLRQLPGGINYDAASGTVTVAPATSLYAMHQTLAGAGRGIPTGTCPSVGASGHALGGGLGANSRHAGLLCDQLVSASVVLPGGQAVTASNSSNPDLFWALRGGGGGNFGVTTSLTFATFPATDLDVVNLNFPPEALAQVLAGWQNWLRTADRNSWALADATVDSMGTHCRILATCPVGSGGSAAAAITKAVGVQPTGTDNHTFNYLDLVRYLAVGNLNPSPLGYVGGSDVLPVVNAATAQGIAKAVEAFPRGAGRMLAIMHALDGALADVAPGATAFPWRRQYALVQWYVETGDAAAATNWLNTAHQAVQPYSVGGYVNYIEANQPASRYFSSNQSRLTAVRQKYDPGRIMFSGLNF
>NZ_AP022582.1|WP_163678395.1|1757667_1758351_-|hypothetical-protein
MGPLVLALAGLALLDSLNVLNLGVVSAVIFDSRLSRRSPIPGALSFIVGVFAVTTTFGLCTVLGLSFLTHVVGFHVTPAIRFRGELVLGLVLTGLAYFPLTAQSSAPGWALAAMRQRPWLLGFLGLAVGSGQAPTAIPYLTGLAMLAALHPRPALWPLAIIAYWLIALSPPLLILALSMRKTMRAKRIQRRLVRALTRYGPISVRLLFLVFGIGLVADALVNHSALW
>NZ_AP022582.1|WP_163678393.1|1756841_1757615_-|methyltransferase-domain-containing-protein
MTDRLERATSFGSIAEDYDGLRPQPPRQAVDWLVPPRCGVAVDLGAGTGLFTRALAGRAAEVIAVEPDARMRAVLTERSPDVRAVEGTGESIPLPDAAADAVFVSSAWHWMDPQRAVPEIGRVLRDGGRFGLIWTSRDRDVDWVRDLDLLPGEDTPEAESPDRFRRRHENVALPDPQIFHNVARATFTFTRTMKLDDVVAMVGTYSRLIMASPDERAERLANARTALHRRFADAEAIDIPMQSRCWRADRIPRGGDH
>NZ_AP022582.1|WP_163678390.1|1755594_1756830_+|osmoprotectant-NAGGN-system-M42-family-peptidase
MRQTAAMAEADRTWMVDTLLALLQTPSPAGRTDAVMQHIGDIFDGFGVPFSLTRRGALTAELPGASATTDRALVVHADTIGCMVRRLKDNGRLEVIPVGTFSARFAAGARVRIFSDDPDEFITGTVMPLKASGHAFGDEIDLQPTDWEHVEVRVDRKVSSREDLVRLGLQIGDFVAFIASPELTADGYIVSRHLDGKAGVAVALALAKNFAENKVVLPHRTMLMITITEEVGHGASHGLPADVAELVSVDNAVCAPGQHSIEDGVTIPMADLHGPFDYHLTRKLCRLAAEQGIPCARDVFRYYRSDAAAAIEAGAGTRAALVGFGLDGSHGWERTHLDSLQAVYCLLHTWLQTPLTFAKWDAKPSGQLRDFPSSEQPAPSERWVPLARGELDSPGEASPGSVWPPSEGPQA
>NZ_AP022582.1|WP_163678411.1|1766879_1767110_+|DUF167-domain-containing-protein
MTDSVVVRVKPGSRKGPLVEVGPDGALTIYVREPAVDGKANDAVTRLLAAHLQLPRSRLELVSGTTSRLKRFRVSR
>NZ_AP022582.1|WP_163678414.1|1767225_1768035_+|PPOX-class-F420-dependent-oxidoreductase
MNRLSTPAHIYLVAVTAAVGAVTAGIGIWCLVDPNSFARAVGFDAHRHFLHDVGAFQLGLGATLLLAVIWADALATALAGFMVANTVHTVNHVVDLDVGGSVGQAWALGVVSVALAFAFVLRLRQLGYVLGSVGTAANPALAPFVRQKTIALTTFRKDGTPGSSPVSIVVDGDHAYFRSFERAVKVRRIRRNPDVEFGPATASGKPTGATLPGRVRLLEGPEYQRAARLLRQKYPLLHGVLVPTAHRLMRSKYGRTVHAELTPLSESQR
>NZ_AP022582.1|WP_163678417.1|1768080_1769622_+|hypothetical-protein
MADVTVAIFTFTRNEATAVTELLARLYVDLPVFGTTIWTPAKQGEKALEGRLSDGRTARVEHHPLSAQGNVVAAAALSRSTRENRADYYVFYGCCGTLDEKLIGQVFRAARVSYLSLGVVIASPDGEVVKLKNKWIVRTQPDDQAPLDAIEMRAGSAGAPGSVSGLDLPDAHVLATDKVIKVSPGVAPVPIDTPSSGPVYAREDWTYSLALALYSGMATHPVLVDMESFGIASAMRSLGLCERVLVLRVVTDALSDKADQTEEDQLDFLKAGLPELAGAIATILGIPMTPGREPRTLEDEVRRLRAGLVMAAPLTNDPRESEMVRVVSAASLAWDGQLDRVDRFSRPLLPSGADMPERANPGMTARLFLEQVASDYRRVASVELDLREVEAQRNSDEGTAALERARVVSRPVAPLVVGQYLASFERAAGTDLGSVLEPWMVSAGDADLESQCAAAFGEVLGPLVQVALDKAHGHTSTVLPDWSVAVGDSWCREFLGAGAAILTDPSLLSSPPT
>NZ_AP022582.1|WP_163678420.1|1769706_1770297_-|TetR-family-transcriptional-regulator
MAIEDRRERERAARRRLIVTTARKLAEAEGWEAVTTRRLSTEIEYSQPVLYKHFSGMEHIADAVAVDGFGELADTLRAARAGAGAANDVLTRVADAYLDFARDNPAVYDAMFTRATNLRFAADDTPPQLEAAFAELRAAVGLVADEQDADTLTEVFWAAFHGLVTLTRAGRLRPGYESDRLQLLVNQFTSRREPTG
>NZ_AP022582.1|WP_163678424.1|1770395_1770872_+|DUF1772-domain-containing-protein
MNLDVITRAAAMIAVLGTAVVYGTDVFCAIVLRPALALVDDSALVAVTGSVHRYGDRRMPVPGVLGVVAAATSAVLAMVAAQRMQAIAAGAALILLLGWIVLYARVSAPINRQLTAAADAGQPLPNGRALQAKWDRVINARATLQGLAVAALCVVLMV
>NZ_AP022582.1|WP_163678428.1|1770924_1771266_+|NIPSNAP-domain-containing-protein
MFQLRIYTLRSPEALQQYAAIHWARHLETFPAFGVTTHGVWTEASDGANRLVALIGYPPGADPEQVTRQVMASPEFAADMAGFNLDEIVDVQSIPLDPTPFSPIHQRTQEGSK
>NZ_AP022582.1|WP_163678432.1|1771262_1771643_+|DUF4267-domain-containing-protein
MTTIIIGYSLAGLLAAGIIFIGARFLVAPRVAAAGYGVLPDLDQPGANAYLSVKGVRDIATGLLVIVLMVAGATHLVAWAMLAATVIPLADAVIVLRNGGSKSIAWGVHGVTAAVMLVTTALLLAS
>NZ_AP022582.1|WP_163678435.1|1771941_1773099_+|hydroxyneurosporene-methyltransferase
MLGDCRHNSYPDRSIGPAAEEGNHLASKVPPAKVARAVERARGHLSWLRQRFAPPAAVMMELILNAWVAQAITTAADLGVADALADGPLSGEQLADRLGADADALRRLMRALIGIGIFRQRSDGRYALTTLAATLRTDAPVSMAGMARWVGSPQHREHWSHLTDAIRTGHPVVPELRGKPVFEYLADEAELGGIFNSAMTNVSELAIVPLTAAYDFSAFGTIVDVGGGHGRLLAAILQTAPNSRGVLFDLPEVVAGGPELFRKYGVEDRVKIEEGSFFDSAPEGGDAYVLKNVIHDWPEDDAVRILKNVRVAARTGARLLLCEFVIPEHNRDFHGKWVDLEMLVVVGARERTAAEYGRLIDQAGFRLNRVVDTASPLSIVEATAV
>NZ_AP022582.1|WP_167527423.1|1773366_1775610_+|EAL-domain-containing-protein
MGYGLSAVVVAAAEFNALGLWGVATALRGQFVLEVTLCVVALLAGLLVVRRVAGLARWWRVTLLAAIATFLAAEALSQRVRVADSGATAPPAAVVGYFVAGLLFGAAILLLVRPGHRAPARTWMRGRQRVITAGLDGLLATLAFFHLVYVARLGAMHGAALPRSTNTAVVTGIAAVELVVVVSALLGAMWYPPYRSGRTNYMLLAAAVITLSSSDRLLAYLRSVGVAQLDLWVGSGFVIAPLLIAWSLLEFPPRARPEHDDEMPTNWAQLTLPYVGFMGSTALVTFHELIGRRVDPIFIGTYVAMAVLVATRYLVAMRVQRMLTEQLIDAKRRLAHQAQHDPLTHLPNRLFLAQQLDDAIRDGPFVLIFVDIDDFKEVNDRFGHAAGDELLCAISARLKSCLGADDTLARVGGDEFAILITGFVEAPEVVADQLRVALRSPFSLHGTSVRVRASMGLVTPGCDGLPRTSDDLLRQADISMYTGKRLGKDTAVVYRPAFTVAEDFPTALRLAKGGAPQGFRLKYQPIVGLPQGDPVAVEALARWTTPSGIQIPPQTFVSLAEANGMGAELDALVIDRACADIQSSGLGLDIHINIGAARLGSVDFERVISNTLDRHGLPPQRVVLEITETVPIVDLADAAAAIRRLNDLGIRVALDDFGAGYNSLTYWHELPVQIVKLDRGLAMGVEPGRNLTLYRSVIGLCEALGLNVIAEGIETAEQAETVFMAGCGLAQGYLFGRATDLTDIVAS
>NZ_AP022582.1|WP_163678440.1|1775706_1776525_-|alpha/beta-fold-hydrolase
MPTITTSDGVEIFYKDWGSGQPIVFSHGWPLTADDWDAQMMFFLHQGYRVIAHDRRGHGRSEQVGTGNDIEHWVADLAALTEQLGLRDAVHIGHSTGGAEVACYVARHQERVAKAVLVSSPTPSMAQAEDNPGGQPQEWFDAVRAGVLGNRSEFFRAVPEGPFYGFNRSGVEPSEAVIANWWRQGMSGSAQAHYETVVSWLQDYSEELKKITVPVLVMHGDDDQIVPFASAVPRAVDLLQNGALKTYAGYPHGMLTTHADVLNPDLLAFIAS

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Crispr_ID: NZ_AP022582_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022582_2

1934223-1934303

Unclear

Consensus_repeat	Method
ACGCCGCGCTTGCGATCGCCACAGTCC	CRISPRCasFinder

1 spacers

cas4

The CRISPR arrays of NZ_AP022582_2

>merge|NZ_AP022582|2|1934223-1934303|CRISPRCasFinder
ACGCCGCGCTTGCGATCGCCACAGTCCGATGGTGGCGACCCGCCGCGCCCGGCCACGCCGCGCTTGCGATCGCCACTAGTC

>NZ_AP022582|2|2|1934223-1934303|CRISPRCasFinder
ACGCCGCGCTTGCGATCGCCACAGTCC	GATGGTGGCGACCCGCCGCGCCCGGCC
ACGCCGCGCTTGCGATCGCCACTAGTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022582.1\|WP_163678809.1\|1938393_1939233_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376777
NZ_AP022582.1\|WP_007170369.1\|1923820_1924015_-\|ubiquitin-like-protein-Pup	unknown	unknown	gnl\|CDD\|368536
NZ_AP022582.1\|WP_163678792.1\|1931748_1932627_+\|RecB-family-exonuclease	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|225441
NZ_AP022582.1\|WP_163684788.1\|1943798_1944884_+\|MCE-family-protein	unknown	unknown	gnl\|CDD\|273384
NZ_AP022582.1\|WP_163678821.1\|1942734_1943781_+\|MCE-family-protein	unknown	unknown	gnl\|CDD\|224380
NZ_AP022582.1\|WP_163678818.1\|1941686_1942742_+\|MCE-family-protein	unknown	unknown	gnl\|CDD\|273384
NZ_AP022582.1\|WP_163678815.1\|1940121_1941690_+\|MCE-family-protein	unknown	unknown	gnl\|CDD\|224380
NZ_AP022582.1\|WP_163678801.1\|1935667_1936177_-\|DUF4126-domain-containing-protein	unknown	unknown	gnl\|CDD\|226432
NZ_AP022582.1\|WP_163678786.1\|1929874_1930513_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
NZ_AP022582.1\|WP_163684786.1\|1930521_1930815_+\|DUF503-family-protein	unknown	unknown	gnl\|CDD\|224467
NZ_AP022582.1\|WP_083172710.1\|1937151_1937433_-\|phosphoribosyl-ATP-diphosphatase	unknown	unknown	gnl\|CDD\|212154
NZ_AP022582.1\|WP_163678795.1\|1932896_1934192_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223587
NZ_AP022582.1\|WP_163678806.1\|1937486_1938089_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|188483
NZ_AP022582.1\|WP_163684784.1\|1925899_1927006_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022582.1\|WP_163678789.1\|1930832_1931675_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|225317
NZ_AP022582.1\|WP_163678765.1\|1924135_1925644_-\|pup-deamidase/depupylase	unknown	unknown	gnl\|CDD\|274726
NZ_AP022582.1\|WP_163678804.1\|1936291_1937149_-\|ATP-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234781
NZ_AP022582.1\|WP_163678783.1\|1927734_1929564_-\|proteasome-ATPase	unknown	unknown	gnl\|CDD\|200312
NZ_AP022582.1\|WP_163678767.1\|1927015_1927657_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022582.1\|WP_163678812.1\|1939234_1940098_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376777

Protein	Function_ID	Function_description	E-value
NZ_AP022582.1\|WP_163678809.1\|1938393_1939233_+\|ABC-transporter-permease	gnl\|CDD\|376777	pfam02405, MlaE, Permease MlaE. MlaE is a permease which in E. coli is a component of the Mla pathway, an ABC transport system that functions to maintain the asymmetry of the outer membrane. In NMB1965 it is involved in L-glutamate import into the cell. In Arabidopsis thaliana TGD1 it is involved in lipid transfer within the cell.	4.61856e-57
NZ_AP022582.1\|WP_163678792.1\|1931748_1932627_+\|RecB-family-exonuclease	gnl\|CDD\|225441	COG2887, COG2887, RecB family exonuclease [DNA replication, recombination, and repair].	2.41463e-68
NZ_AP022582.1\|WP_163684788.1\|1943798_1944884_+\|MCE-family-protein	gnl\|CDD\|273384	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells. [Cellular processes, Pathogenesis].	1.81423e-34
NZ_AP022582.1\|WP_163678821.1\|1942734_1943781_+\|MCE-family-protein	gnl\|CDD\|224380	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism].	3.25264e-38
NZ_AP022582.1\|WP_163678818.1\|1941686_1942742_+\|MCE-family-protein	gnl\|CDD\|273384	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells. [Cellular processes, Pathogenesis].	1.77144e-38
NZ_AP022582.1\|WP_163678815.1\|1940121_1941690_+\|MCE-family-protein	gnl\|CDD\|224380	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism].	2.87911e-21
NZ_AP022582.1\|WP_163678801.1\|1935667_1936177_-\|DUF4126-domain-containing-protein	gnl\|CDD\|226432	COG3918, COG3918, Predicted membrane protein [Function unknown].	1.40283e-51
NZ_AP022582.1\|WP_163678786.1\|1929874_1930513_+\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	2.51992e-05
NZ_AP022582.1\|WP_163684786.1\|1930521_1930815_+\|DUF503-family-protein	gnl\|CDD\|224467	COG1550, COG1550, Uncharacterized protein conserved in bacteria [Function unknown].	5.96394e-39
NZ_AP022582.1\|WP_083172710.1\|1937151_1937433_-\|phosphoribosyl-ATP-diphosphatase	gnl\|CDD\|212154	cd11547, NTP-PPase_HisE, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) MazG-like domain found in Mycobacterium tuberculosis phosphoribosyl-ATP pyrophosphohydrolase (HisE or PRATP-PH) and its bacterial homologs. This family includes M. tuberculosis phosphoribosyl-ATP pyrophosphohydrolase (HisE or PRATP-PH) and its bacterial homologs. M. tuberculosis HisE is encoded by the hisE gene, which is a separate gene presenting in many bacteria and archaea but is fused to hisI in other bacteria, fungi and plants. HisE is responsible for the second step in the histidine-biosynthetic pathway. It can irreversibly hydrolyze phosphoribosyl-ATP (PRATP) to phosphoribosyl-AMP (PRAMP) and pyrophosphate. HisE dimerizes into a four alpha-helix bundle, forming two inferred PRATP active sites on the outer faces. M. tuberculosis HisE has been found to be essential for growth in vitro, thus making it a potential drug target for tuberculosis.	1.04098e-44
NZ_AP022582.1\|WP_163678795.1\|1932896_1934192_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	2.56268e-112
NZ_AP022582.1\|WP_163678806.1\|1937486_1938089_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|188483	TIGR03968, transcriptional_regulator_TetR_family, mycofactocin system transcriptional regulator. Members of this family are TetR family putative transcriptional regulators that occur in genome contexts near proteins of the mycofactocin system. These include the precursor peptide (TIGR03969), a radical SAM peptide maturase (TIGR03962), and a putative carrier protein (TIGR03967). [Regulatory functions, DNA interactions].	3.324e-16
NZ_AP022582.1\|WP_007170369.1\|1923820_1924015_-\|ubiquitin-like-protein-Pup	gnl\|CDD\|368536	pfam05639, Pup, Pup-like protein. This family consists of several short bacterial proteins formely known as (DUF797). It was recently shown that Mycobacterium tuberculosis contains a small protein, Pup (Rv2111c), that is covalently conjugated to the e-NH2 groups of lysines on several target proteins (pupylation) such as the malonyl CoA acyl carrier protein (FabD). Pupylation of FabD was shown to result in its recruitment to the mycobacterial proteasome and subsequent degradation analogous to eukaryotic ubiquitin-conjugated proteins. Searches recovered Pup orthologs in all major actinobacteria lineages including the basal bifidobacteria and also sporadically in certain other bacterial lineages. The Pup proteins were all between 50-90 residues in length and a multiple alignment shows that they all contain a conserved motif with a G [EQ] signature at the C-terminus. Thus, all of them are suitable for conjugation via the terminal glutamate or the deamidated glutamine (as shown in the case of the Mycobacterium Pup). The conserved globular core of Pup is predicted to form a bihelical unit with the extreme C-terminal 6-7 residues forming a tail in the extended conformation. Thus, Pup is structurally unrelated to the ubiquitin fold and has convergently evolved the function of protein modifier.	1.95003e-14
NZ_AP022582.1\|WP_163678789.1\|1930832_1931675_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|225317	COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis].	1.91621e-120
NZ_AP022582.1\|WP_163678765.1\|1924135_1925644_-\|pup-deamidase/depupylase	gnl\|CDD\|274726	TIGR03688, pupylate_PafA2, proteasome accessory factor PafA2. This protein family is paralogous to (and distinct from) the PafA (proteasome accessory factor) first described in Mycobacterium tuberculosis (see TIGR03686). Members of both this family and TIGR03686 itself tend to cluster with each other, with the ubiquitin analog Pup (TIGR03687) associated with targeting to the proteasome, and with proteasome subunits themselves. [Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NZ_AP022582.1\|WP_163678804.1\|1936291_1937149_-\|ATP-phosphoribosyltransferase	gnl\|CDD\|234781	PRK00489, hisG, ATP phosphoribosyltransferase; Reviewed.	5.71986e-139
NZ_AP022582.1\|WP_163678783.1\|1927734_1929564_-\|proteasome-ATPase	gnl\|CDD\|200312	TIGR03689, pup_AAA, proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity. [Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NZ_AP022582.1\|WP_163678812.1\|1939234_1940098_+\|ABC-transporter-permease	gnl\|CDD\|376777	pfam02405, MlaE, Permease MlaE. MlaE is a permease which in E. coli is a component of the Mla pathway, an ABC transport system that functions to maintain the asymmetry of the outer membrane. In NMB1965 it is involved in L-glutamate import into the cell. In Arabidopsis thaliana TGD1 it is involved in lipid transfer within the cell.	5.83133e-62

>NZ_AP022582.1|WP_163678795.1|1932896_1934192_+|DEAD/DEAH-box-helicase
MLEDTTFAHLGVSQPLVDTLAQGGVDRPFPIQIETLPDTLAGRDVLGRGKTGSGKTLAFSIPLVSRLDAGNRRPGKPTGLVLAPTRELATQIAATIAPLAAVRGLRVTTIFGGVPQHKQVTALKAGIDIVVACPGRLEDLMKQGVVKLSAVQITVIDEADHLADLGFLPTVTRILAATPTGGQRMLFSATLDAAVDTLVKRFLTSPVTRSVAEPTSLTPEMTHHFFCVDGPQAKKELVHRLAAGESRRILFMRTKHQARKLARQLTQSGIASVELHGNLSQNVRDRNLAAFAAGQARVLVATDIAARGVHVDNVELVVHVDPPAEHKAYLHRSGRTARAGASGDVVTIALPEQRRDTESMMRKAAIRAVPQQVTASSPVIHNLAGQPAPRQAVAPAPVAARRSAPAPVAPHGSTAGRSRRRRSRRPATTAR
>NZ_AP022582.1|WP_163678792.1|1931748_1932627_+|RecB-family-exonuclease
MTDQPQERARPAAKPALSPSRAADFKQCPLLYRFRAIDRLPEAPSAAQLRGSVVHAALQQLYGLPAAQRGPDTALSLVEPAWDQVIAAAPDLVGGFDPEQRGQLIAEARALLSGYYRLEDPTRFDPQCCEERVEVELADGTLLRGFIDRIDLAATGEVRVVDYKTGKAPPAARALAEFKAMFQMKFYAVALLRTRGVPPTRLRLIYLADGQVLDYSPDHDELLRFEKTLMAIWRAIQSAGQTGDFRPSQSRLCDWCPHQQHCPLFGGTPPAYPGWPDYTLAQGVPQSTEPAA
>NZ_AP022582.1|WP_163678789.1|1930832_1931675_-|methyltransferase-domain-containing-protein
MSATGPFTVGERVQLTDAKGRHYTMSLTPGAEFHTHRGSIPHDALIGLEQGSVVKSSNGAPFLVLRPLLVDYIMSMPRGPQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTCSLLRAVGPDGRVVSYEQRADHAEHARRNVSVFYGQPPDNWDLIIADVADSEMPDGSFDRAVLDMLAPWEVLDAVARLLIPGGVLMIYVATVTQLSRAVEALRAQQCWTEPRSWETLQRGWNVVGLAVRPQHSMRGHTAFLIFTRRLAPGVVAPAPLGRKREGRDG
>NZ_AP022582.1|WP_163684786.1|1930521_1930815_+|DUF503-family-protein
MWIGWLEFDVLLGDVRSLKQKRSVIRPVVAELQRKFSVSAAETGSHELYRRAGIGVATVSGDRSHAVDVLDAAERLVAAHPEFELLSVRRGLQRSDD
>NZ_AP022582.1|WP_163678786.1|1929874_1930513_+|hypothetical-protein
MHRHLSATLSAATVLAAVGISGCSSHQQPRIASSVPAAAPATSSTVVIPPTTPLPPPEALTDILTRLVDPKIPGINKVSLVEGAAPESADSLDKFTNALRDNGYLPINFVAHDIAWSDKTSSDVVATIDVNTAQPANGSFHFPMEFTPFQGGWQLSRQTAEMLLALGKSPAVAPPANPAPAPAPQPAPAAPPAQHPAPGPGPEPGPTPGPPG
>NZ_AP022582.1|WP_163678783.1|1927734_1929564_-|proteasome-ATPase
MGGSERSESFGTPRESGMSPGDAAELEELRREAALLREQLEHAAGAQGGTRSARDVHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQPPSGYGVLLGSHDDDTVDVFTSGRKMRLTCSPNIDVASLRKGQTVRLNEALTVVEAGTFESVGEISTLRELLADGHRALVVGHADEERIVWLAEPLVAEDLPEGHPDALNDDTRPRKLRPGDSLLVDTKAGYAFERIPKAEVEDLVLEEVPDVSYSDIGGLTRQIEQIRDAVELPFLHKELYREYALRPPKGVLLYGPPGCGKTLIAKAVANSLAKKMAEVRGDDAREAKSYFLNIKGPELLNKFVGETERHIRLIFQRAREKASEGTPVIVFFDEMDSIFRTRGTGVSSDVETTVVPQLLSEIDGVEGLENVIVIGASNREDMIDPAILRPGRLDVKIKIERPDAEAAQDIFSKYLVETLPLHADDLAEFGGDRTACIKAMIEKVVERMYAEIDDNRFLEVTYANGDKEVMYFKDFNSGAMIQNVVDRAKKNAIKSVLETGQPGLRIQHLLDSIVDEFAENEDLPNTTNPDDWARISGKKGERIVYIRTLVTGKSSSASRAIDTESNLGQYL
>NZ_AP022582.1|WP_163678767.1|1927015_1927657_+|hypothetical-protein
MSAPQSDHVGKHARDLAGKRYGEVLLVTAGEAGPQATVYNSFPLNDCPAELWSALDPHAIAAENGVAAALLNGPRYWLMNAIEKDAQGPQVTKTFGGIEMIQQATVLLSSMNPAPYLPNKVNRHTVFVFNAGEQIYELIDPHGQHWVMQTLSQVADPSLTRADLPRLADRLDLPAGWTYQPRVLAEELRVDTRTRAAQVLQDNLTNSYSLVTG
>NZ_AP022582.1|WP_163684784.1|1925899_1927006_+|hypothetical-protein
MPSVLTRRARWRRLWPRSAPMLAAYATLQACILPVYLITGGHDVEITGAPTTSELAVLVIVGLALPLMAVVGWLVSRSRNGRARAAIATVSLVLVACVGLTTGDAADLQQEAVVVAVVLILTGVGVGSVVGWAVRMMLSHFAMVGALAVRALPVVLLTALVFFNTYVWLMAATISGNRLGLAMTFLMSIAAAFVVSATVERVRPMLRSTSVPEETEHLSATPFAAMPAAPDCPPLKKAERLNVVFVLVASQLAQILVVAVVTAAIYLILGLIVLSPELLNEWTHTYKSTATVLGFTLPVPDSLVHMSLFLGALTFMYISARAAGDAEYRSAFLDPLIEDLHTTLIARNRYRGAVALSARAVDGTGGCD
>NZ_AP022582.1|WP_163678765.1|1924135_1925644_-|pup-deamidase/depupylase
MQRIIGTEVEYGISSPSDPTANPILTSTQAVLAYAAAAGIQRAKRTRWDYEVESPLRDARGFDLSRSAGPPPVVDADEVGAANMILTNGARLYVDHAHPEYSAPECTDPLDAVIWDKAGERVMEAAARHVASVPGAAKLQLYKNNVDGKGASYGAHENYLMSRQTPFSSIIAGLTPFLVSRQVVTGSGRVGIGPSGDEPGFQLSQRSDYIEVEVGLETTLKRGIINTRDEPHADADRYRRLHVIIGDANLAETSTYLKLGTTALVLDLIEVGPEHGIDLSDLVLARPVHAVHAISRDPSLRAVVALADGRELTGLALQRIYLDRVAKLVDGRDPDPRAAHIVETWAHVLDQLERDPMECAEVLDWPAKLRLLEGFRQRENLSWSAPRLHLVDLQYSDVRLDKGLYNRLVARGSMKRLVSEHQVLEAVDNPPTDTRAYFRGECLRRFGADIAAASWDSVIFDLGGDSLVRIPTLEPLRGSKAHVGALLDSVDSAAELVEQLTS
>NZ_AP022582.1|WP_007170369.1|1923820_1924015_-|ubiquitin-like-protein-Pup
MAQEQTKRGGGGGDDDDFADSTAAGQERREKLAEDTDDLLDEIDDVLEENAEDFVRAYVQKGGQ
>NZ_AP022582.1|WP_163678801.1|1935667_1936177_-|DUF4126-domain-containing-protein
MTHALILLLALLIGVVAGLRSLTAPAVVAWAAFLGWIDLHGTWAGWMASIITVVVFTVLAVGELVNDKLPKTPARTAPPIFAARIVTGGLAGAVLGAWPHWTFSALGAGVVGAVLGTLGGYQARKRLAAVAGRDLPIALLEDAVAIVGGFVIVAVTGHVLTEYLLTAVK
>NZ_AP022582.1|WP_163678804.1|1936291_1937149_-|ATP-phosphoribosyltransferase
MLRVAVPNKGTLSEPASEILAEAGYRRRTDSKDLTVIDPVNQVEFFFLRPKDIAIYVGSGQLDLGITGRDLVRDSDAPVRERLALGFGSSSFRYAGPAGRGWTTADLAGKRIATAYPNLVRKDLADRGIEATVIRLDGAVEISVQLGVADAIADVVGSGRTLSLHDLEAFGDPLCDSEAVLIEGADPDGQGETRAARDQLVARIQGVVFGQQYLMLDYDCPRSVLDRATSITPGLESPTIAPLADPDWVAIRALVPRRGVNEIMDELAAIGAKAILASDIRFCRF
>NZ_AP022582.1|WP_083172710.1|1937151_1937433_-|phosphoribosyl-ATP-diphosphatase
MKQSLAVKTFEDLFAELGERARTRPAGSATVAALDGGIHGLGKKILEEAGEVWLAAEHESDDALAEEISQLLYWTQVLMVARGLSLDDVYAKL
>NZ_AP022582.1|WP_163678806.1|1937486_1938089_-|TetR-family-transcriptional-regulator
MPSANTGSLRDRRRAALLTTIQQTAQRLFAERGFEAVTTEDIAAAAGVSISTYFRYAPTKEGLLVDPVREAAAEIVGSYSARPPDESPVEALIQLFVTHARDVSGVDNLDRWRHAVATAPHLLSKSVLVSQTDHSKLIDQVAQRMGVDAAVDIRPALLVHTSLATVKFVLDGWLASDIATSPRFHEQLEEALRITLAGFD
>NZ_AP022582.1|WP_163678809.1|1938393_1939233_+|ABC-transporter-permease
MTTQVDGVVAIRDWSAGYVRRHPVASLTTVGEQFVLGVRTVQYFFFDLVTGRFQWQEFVRQGAFMAGTAVLPTILVSLPISVTLSIQFALLAGQVGATSLAGAASGLAVIRQGASLVAAVLMASAVGSAITADLGSRTMREETDAMEVMGVSVIRRLVVPRFAAAVMIGVALTGVVCFAGFFASYMFNVYFQNGAPGSFVSTFASFATTGDMILALLKAIVFGAIVAIVSSQKGLSTKGGPTGVANSVNAAVVEAILLLMIVNVAISQLYIMLSPRTGL
>NZ_AP022582.1|WP_163678812.1|1939234_1940098_+|ABC-transporter-permease
MTASAYRPFAPISVPLARLYHRGTVPVIRLGHLLVFFVRALVAVPLALRQYRGEFLRLLSNITWGNGSIVVGGGTAGVAVVLGMTVGALVGIEGYNFLDLLGLGPATGFVSSLVNTRELAPLMASLAFAMQGGCRFTAQLGSMRIAEEIDAMESIAIRPIPYLVTTRLIASVVAIVPLYAACLAIGYLSTQIVVEIGSGGSTGSYLHYFTLMLAGQDIVYSLIKAVVFVWIASTIQCYYGYYASGGPEGVGVAAGHGMRASITVVIIVNMLLTMALWGVDSGARFGG
>NZ_AP022582.1|WP_163678815.1|1940121_1941690_+|MCE-family-protein
MPNSFELDGRGPSDRQLLGIGIAVVLVSALLTTAMLVKSTGRLNDYVRVVADLVNVGDGLPQKSDVKYHGVLVGMVNGVVPAEHGKPNYVHIDLKQEYAKSIPASVTARVVPSNVFAVSSVQLVGNGPGATIRAGAHISEDRRLPTVLFQTTVSKLRDVLAAAGRGRDDRSVGILAALGAATDHRRVSLLNAGAQLNRLLDQLNSIVSTDTGPSTVSALLDATRGLAQTAPDLLDALHQAVEPMRTFAETRGQLASLLSGADDTVGTTRQSIGNHVDQLIRITTDFTPVLGVLAQKSNNFVPAVTKLDNLANQFMEQVWNPETNLGNMRAILTFTPSSTYTRADCPHYGELKGPSCFTAPLVPVRPDLPEVLLPQNYQPPKDLAPPPGTVIGPDGNLVAVGPPLINPNPNLSDPNPPLPAGVTPSPPVPGSANPDNPSPGAPATPQPHEPWVAPVAPKAPWIPQASFGGNVGPVGSQYERNMLGVITGAPATEATELLLGPVARGTTVSLTPAAAHPPGEAK
>NZ_AP022582.1|WP_163678818.1|1941686_1942742_+|MCE-family-protein
MRFRGPLIALTLFMIVSLTLTWLVYVSLRRDVAGNTATYSVVFSDVYGLREGDDVRMAGVRVGRVEKIELDGTLAKVSFVVQQEQRLFGNTLASVTYQNIVGQRYLGLSLGKDGSPQLLPPGSTIPLERTEPSFDVTTLLNGYEPLFSLLNPHDADNLTKGIIASLQGDTSSLATLVGQTSTLTQTFAGRDQALGTVITNLNKVMGNLAAQNDDLDGVIAQTRSIVGELDARRPDLVASVGSLARVTGRLSASATDVYPALREFIDRQPGVTKHIMDVEPQVAFFGDNIPLLLKGLTRVGNQGAYGNAYVCDVNFMGFFPGLNDVVPIIVNAATPGNKAWHTPRCRSTADG
>NZ_AP022582.1|WP_163678821.1|1942734_1943781_+|MCE-family-protein
MADPSLWRRMTKRPLESYNKTWLGFIAVAVVAVIIGVMLLVHALGAGYRHYTAEFLQAASLRAGNPIVVAGIPVGNVTSMKLAGDHVEAGLKIRDNIALGKDSRAQIKVTTILGSRYLALEPSGPAHLPDNTFDLAHTEVPYDLQAALQDATTTFEQVDSDRFAQSLAVLGKQLEGLPAVVPQAISNINTLSSIIAIRRDQLGQLLRSTELVTNMLRRQQAGIGTLVDQGQDLLGQFVARRAVFHAMMQSLSSLVDTMSQVVVNDRSGVDALIKDIRDFTNLMSQHDDLLHSMLQTSPIFFREAANLTGDGNAINFNAPNVPLIDSWMCAISGRAKQFGMIQYFKDCK
>NZ_AP022582.1|WP_163684788.1|1943798_1944884_+|MCE-family-protein
MVTAVAVIAATIGIGWWYLGSDDDTITLTAQFDSASGLYEGNEVAVLGMPVGKITKITAKGGYVEVEFTVDRHVKVPATAQAVTVSTSILTDRQIELTPPYHGGPTLQNHDTIGLPRTKTPVEFSSVLNVLDKVTKSLAGDGHGGGPIADVLGGGTEVVKGNGERIKAALGELSKALRLSSDGGAATREQITTIVKNISTLFDAVSANDAKLREFASTIHQVSQIMADEDIGSGSTGRKLDQLIQRAGDLLDANRDNIKQGVLNGNATLKMVTDQRRDLAELLDLAPLVADNAYNMIDRANGSVRARFLTDRLLFDSQYTKEICNLMGLRQLGCSTGTIQDFGPDFGLTYVLDGMAAMGQK

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Crispr_ID: NZ_AP022582_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022582_3

5052440-5052547

Orphan

Consensus_repeat	Method
TTTGATATCGCCCGCGCTATCAAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP022582_3

>merge|NZ_AP022582|3|5052440-5052547|CRISPRCasFinder
TTTGATATCGCCCGCGCTATCAAATCCGCGAAGCTTCACATGCCCTGGAGCGCCGAGGCCCCTGGGGATGAGTGACTCCCGGATTTGATATCGCCCGTGCTATCAAAT

>NZ_AP022582|3|3|5052440-5052547|CRISPRCasFinder
TTTGATATCGCCCGCGCTATCAAAT	CCGCGAAGCTTCACATGCCCTGGAGCGCCGAGGCCCCTGGGGATGAGTGACTCCCGGA
TTTGATATCGCCCGTGCTATCAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022582.1\|WP_163683764.1\|5041410_5044014_+\|alpha/beta-hydrolase-fold-domain-containing-protein	unknown	unknown	gnl\|CDD\|369561
NZ_AP022582.1\|WP_163683763.1\|5040798_5041254_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022582.1\|WP_163683773.1\|5052921_5054472_-\|SulP-family-inorganic-anion-transporter	unknown	unknown	gnl\|CDD\|223732
NZ_AP022582.1\|WP_163683779.1\|5060932_5061820_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|235737
NZ_AP022582.1\|WP_163683771.1\|5051541_5052402_+\|zinc-metalloprotease-HtpX	unknown	unknown	gnl\|CDD\|235102
NZ_AP022582.1\|WP_163683774.1\|5054714_5055740_-\|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|171500
NZ_AP022582.1\|WP_163683775.1\|5056575_5057742_+\|PPE-domain-containing-protein	unknown	unknown	gnl\|CDD\|366325
NZ_AP022582.1\|WP_163683768.1\|5048743_5049097_-\|DUF732-domain-containing-protein	unknown	unknown	gnl\|CDD\|368380
NZ_AP022582.1\|WP_163683765.1\|5044046_5044295_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022582.1\|WP_163683777.1\|5059321_5059813_-\|YajQ-family-cyclic-di-GMP-binding-protein	unknown	unknown	gnl\|CDD\|377366
NZ_AP022582.1\|WP_163683780.1\|5061911_5062898_+\|retinol-dehydrogenase	unknown	unknown	gnl\|CDD\|224513
NZ_AP022582.1\|WP_083171674.1\|5056270_5056573_+\|PE-family-protein	unknown	unknown	gnl\|CDD\|376422
NZ_AP022582.1\|WP_163683776.1\|5057745_5059227_-\|NAD(P)-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|224983
NZ_AP022582.1\|WP_163683778.1\|5059984_5060914_-\|DMT-family-transporter	unknown	unknown	unknown
NZ_AP022582.1\|WP_163683770.1\|5050442_5051459_+\|polyprenyl-synthetase-family-protein	unknown	unknown	gnl\|CDD\|223220
NZ_AP022582.1\|WP_163683772.1\|5052552_5052909_+\|toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|310261
NZ_AP022582.1\|WP_163685430.1\|5044511_5047136_+\|adenylate/guanylate-cyclase-domain-containing-protein	unknown	unknown	gnl\|CDD\|226418
NZ_AP022582.1\|WP_163683769.1\|5049200_5050427_-\|geranylgeranyl-reductase-family-protein	unknown	unknown	gnl\|CDD\|223717
NZ_AP022582.1\|WP_163683766.1\|5047163_5047988_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|181334
NZ_AP022582.1\|WP_163683767.1\|5048043_5048736_+\|demethylmenaquinone-methyltransferase	unknown	unknown	gnl\|CDD\|234689

Protein	Function_ID	Function_description	E-value
NZ_AP022582.1\|WP_163683764.1\|5041410_5044014_+\|alpha/beta-hydrolase-fold-domain-containing-protein	gnl\|CDD\|369561	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	6.11582e-85
NZ_AP022582.1\|WP_163683773.1\|5052921_5054472_-\|SulP-family-inorganic-anion-transporter	gnl\|CDD\|223732	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism].	1.1254e-118
NZ_AP022582.1\|WP_163683779.1\|5060932_5061820_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|235737	PRK06197, PRK06197, short chain dehydrogenase; Provisional.	2.30938e-96
NZ_AP022582.1\|WP_163683771.1\|5051541_5052402_+\|zinc-metalloprotease-HtpX	gnl\|CDD\|235102	PRK03072, PRK03072, heat shock protein HtpX; Provisional.	0
NZ_AP022582.1\|WP_163683774.1\|5054714_5055740_-\|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	gnl\|CDD\|171500	PRK12439, PRK12439, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional.	0
NZ_AP022582.1\|WP_163683775.1\|5056575_5057742_+\|PPE-domain-containing-protein	gnl\|CDD\|366325	pfam00823, PPE, PPE family. This family named after a PPE motif near to the amino terminus of the domain. The PPE family of proteins all contain an amino-terminal region of about 180 amino acids. The carboxyl terminus of this family are variable, and on the basis of this region fall into at least three groups. The MPTR subgroup has tandem copies of a motif NXGXGNXG. The second subgroup contains a conserved motif at about position 350. The third group are only related in the amino terminal region. The function of these proteins is uncertain but it has been suggested that they may be related to antigenic variation of Mycobacterium tuberculosis.	2.4229e-51
NZ_AP022582.1\|WP_163683768.1\|5048743_5049097_-\|DUF732-domain-containing-protein	gnl\|CDD\|368380	pfam05305, DUF732, Protein of unknown function (DUF732). This family consists of several uncharacterized Mycobacterium tuberculosis and leprae proteins of unknown function.	2.38803e-18
NZ_AP022582.1\|WP_163683777.1\|5059321_5059813_-\|YajQ-family-cyclic-di-GMP-binding-protein	gnl\|CDD\|377366	pfam04461, DUF520, Protein of unknown function (DUF520). Family of uncharacterized proteins.	3.98734e-84
NZ_AP022582.1\|WP_163683780.1\|5061911_5062898_+\|retinol-dehydrogenase	gnl\|CDD\|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	2.13036e-07
NZ_AP022582.1\|WP_083171674.1\|5056270_5056573_+\|PE-family-protein	gnl\|CDD\|376422	pfam00934, PE, PE family. This family named after a PE motif near to the amino terminus of the domain. The PE family of proteins all contain an amino-terminal region of about 110 amino acids. The carboxyl terminus of this family are variable and fall into several classes. The largest class of PE proteins is the highly repetitive PGRS class which have a high glycine content. The function of these proteins is uncertain but it has been suggested that they may be related to antigenic variation of Mycobacterium tuberculosis.	9.93604e-13
NZ_AP022582.1\|WP_163683776.1\|5057745_5059227_-\|NAD(P)-binding-domain-containing-protein	gnl\|CDD\|224983	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism].	3.2037e-127
NZ_AP022582.1\|WP_163683770.1\|5050442_5051459_+\|polyprenyl-synthetase-family-protein	gnl\|CDD\|223220	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism].	1.1392e-99
NZ_AP022582.1\|WP_163683772.1\|5052552_5052909_+\|toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|310261	pfam05534, HicB, HicB family. This family consists of several bacterial HicB related proteins. The function of HicB is unknown although it is thought to be involved in pilus formation. It has been speculated that HicB performs a function antagonistic to that of pili and yet is necessary for invasion of certain niches.	4.54108e-17
NZ_AP022582.1\|WP_163685430.1\|5044511_5047136_+\|adenylate/guanylate-cyclase-domain-containing-protein	gnl\|CDD\|226418	COG3903, COG3903, Predicted ATPase [General function prediction only].	5.58216e-65
NZ_AP022582.1\|WP_163683769.1\|5049200_5050427_-\|geranylgeranyl-reductase-family-protein	gnl\|CDD\|223717	COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion].	1.86925e-80
NZ_AP022582.1\|WP_163683766.1\|5047163_5047988_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|181334	PRK08263, PRK08263, short chain dehydrogenase; Provisional.	2.3583e-168
NZ_AP022582.1\|WP_163683767.1\|5048043_5048736_+\|demethylmenaquinone-methyltransferase	gnl\|CDD\|234689	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE.	3.97078e-127

>NZ_AP022582.1|WP_163683771.1|5051541_5052402_+|zinc-metalloprotease-HtpX
MTWHPQANRLKTFALLVGMSALIVFVGSLFGRTAMFLAVLFAVGMNIYTYYNSDKLALRAMHAQPVSELQAPVMYRIVRELATAAHQPMPRLYISDTNAPNAFATGRNPRNAAVCCTTGILGILNERELRAVLGHELSHVYNRDILISCVAGAMASVITALANMAMWAGMFGGNRDGENPFALLLVSLLGPIAATVVRLAVSRSREYQADESGAVLTGDPLALASALRKISGGVQAAPLPPEPQLASQAHLMIANPFRAGERIGSLFSTHPPIEDRIRRLEAMARG
>NZ_AP022582.1|WP_163683770.1|5050442_5051459_+|polyprenyl-synthetase-family-protein
MSTPATVVAGVDFGDAAFAAAVRDGVGRIEQLMDTELRSADDVMTDSLTHLFKAGGKRFRPLFTVLSAQIGPDPDAHDVTIAGAVIELVHLATLYHDDVMDEAEVRRGAPTANVRWGNNVAILAGDYLFATASRLVSRLGPEAVRLIAETFAQLVTGQMRETRGLTGAPEGADAIEHYLKVVYEKTACLIAAAGRFGAMFSGADAEQVERLSRLGGIVGTAFQISDDIIDIDSDSHESGKLPGTDVREGVHTLPMLYALREPGADAARLRELLAGPIDDDDAVAEALTLLRASPGMAKAKQTLAEYAAQARAELALLPDIAGRRALQTLVDYTISRHG
>NZ_AP022582.1|WP_163683769.1|5049200_5050427_-|geranylgeranyl-reductase-family-protein
MSVETKADLVVVGAGPAGSAAAAWAARAGGDVLVIDSASFPRDKPCGDGLTPRAVAECERLGLGDWLDTRIRHRGLRMSGFGGEVEVGWPGPSFPSTGSAVARVELDDRIRKVAEDSGARMMLGTKAVAVHHDSSRRVVSLTLADGTEVGCRQLIVADGARSSLGRKLGRRWHQETVYGVAARGYLASARADDPWLTSHLELRSPDGAVLPGYGWIFPLGNGEVNIGVGALSTSKRPADLALRPLINYYTDLRRDEWGFDGPPRAVSSALLPMGGAVSGVAGPNWMLIGDAAACVNPLNGEGIDYGMETGRLAAQLLDCRDLSRVWPALLQEHYGRGFSVARRLALLLTFQRFLPATGPIAMRSPRLMTIAVRVMANLVTDDDADWVARAWRGAGRLSRLVDRRVPFS
>NZ_AP022582.1|WP_163683768.1|5048743_5049097_-|DUF732-domain-containing-protein
MKGTKLATIGGLAAAAIALAAPALASPPPPSDQDAPFKNTVNGFGIYQPQDQLAWLGKITCERIGRGVDGDPYKSANFIQRNLPRGTTQGQAFQFLGAAVDHYCPDQVGFVQRAGTH
>NZ_AP022582.1|WP_163683767.1|5048043_5048736_+|demethylmenaquinone-methyltransferase
MSRAALDKDPRDVASMFDGVARRYDVTNTVLSLGQDRYWRKATRSALDIGPGQQVLDLAAGTAVSTVELQKSGAWCVAADFSVGMLAAGAARDVPKVAADATRLPFGDDVFDAVTISFGLRNVVDPKAALREMARVTRPGGRLVVCEFSTPTNALFATAYKEYLMRALPRVARAVSSNPDAYVYLAESIRAWPDQANLAREIAGAGWAAVRWRNLTGGIVALHAGYKPLR
>NZ_AP022582.1|WP_163683766.1|5047163_5047988_-|SDR-family-NAD(P)-dependent-oxidoreductase
MTEKVWFITGTSRGFGRAWTIAALERGDKVAATARNTASLDDLAEKYGDALLPIRLDVTDRDADFAAVKQAHDHFGRLDIVVNNAGYGQFGFVEELSERDARDQIETNVFGALWITQAALPYLRAQRSGHIIQVSSIGGITAFPLVGMYHASKWALEGFSQALAQEVAPFGVHVTLIEPGGFDTDWAGDSARHADPLPAYDDVRAAVQAERSKRWASPGNPEASAAALLKVVDAEKPPLRVFFGASPLETAKADYENRLRTWAKWQPVAELAQG
>NZ_AP022582.1|WP_163685430.1|5044511_5047136_+|adenylate/guanylate-cyclase-domain-containing-protein
MTFLFTDIEGSTRRWEADAGAMRIALAVHDAVLRSAIGGHGGFMFKHTGDGVCAAFSSPRSAVDAAVAAQQQLELPVRMGLATGEADLRDGDYLGAVLNRAARVMAAGHGGQILLADSTAGLITGVDLIDLGPRRLRDLPTPLHLFQVQASGLRSEFPALRALDSSPGNLRPQATSFIGRESEAAKVQAAVKAHRLVTLTGVGGVGKTRLATEVAVRLADEFPDGAWFFELAAVTDPAAVADAVAAVLGITQQPGKTVTESVASALEGRVRLLVFDNCEHVVDSVADLVEAILGASATVTILATSREGLGVSEEQLWRVPSLDVNSGADSAAVTLFVDRARSVVTDFSLTQPDAMDAVVEICRRLDGIPLAIELAASRMASMTAGEVRDRLDQRFRLLVGARRGLSRHQTLRHAVAWSYEHLDEAEKVLLERCSVFAGGFDLQSACAVMGSGDDYAVLDLLDALVHKSLLVADRSSGRTRYSMLETIRQFAEDQLVARGEAFEIRAAHSRYFAGREADIMALWDSPRQHEAYAWFSVELANLRTAFRWAADQADLDTAAAIAAYAALLGALVANYEPMAWAEELIEPARALDHPRLATLYVNAAQCYWTGRIEEAVGHADAGQTVIDGGGQVQIGAEGALTAVYPFIGQPERNVDWCRAQLARGRDTHTVTQAMLVVGLAVAGAGAEARAAANGLVYAAEATHNPWALANALYAYGFAFRDADPARALEALRRGLVIAQDSGSRAAESLLATVLSRLEADHGDPVAALDHITLAIRNFHDAGNVAYIRFALATLAVLLDRRGRLKPAAIIAGFAFDPLNASEVSTAITHLRDVLGNQSYESLTRKGEAMTIAEMVTYAYEQIDQARMDLNAVSE
>NZ_AP022582.1|WP_163683765.1|5044046_5044295_+|hypothetical-protein
MVTTRAEAAQYVKDAGGLKLVIFGADGHEVAAMFVQGSVTYDPEEATFIAVAEDGHSVGELFVDESVDYDEGIDAFVIRAAR
>NZ_AP022582.1|WP_163683764.1|5041410_5044014_+|alpha/beta-hydrolase-fold-domain-containing-protein
MTDTAGTDRPTPDVDVVVVGAGIAGLYLAYRLSRAGYRFRVFEAADDIGGTWYWNRYPGARVDVPSVDYMFSFDPDWRRDWQWSEKYATQPEILRYLNHVADKHDLRRHITFSTRVQQARWDDDASLWRVRTDGGDVTSRFVVMATGCLSMPKPAEIDGLERFAGEVYFTNRWPHERVDFTGKRVAVIGTGSSGVQSIPVIAQEARELVVFQRTPNFSIPARNGPLSPEKLAQLANESEYRAAARVSWGGIPGERSIVPTFSVSESERQERFERAWEGGLLFDTFTVFADVLSNPAANHEFAEFFRNKIRSIVDDPQTAADLCPTDHPIGTKRPCLDTNYYATYNLPHVRLVNVRKHPIRQVTETGIDTAGESFTFDAIVFATGFDAVTGAITAVDFRGRNDLSLKDKWANGPQTYLGLTTVGFPNLFFITGPGSPSVLSNMAVSIETHADWVLDCLGYLGAGGFDVIEPTEMAEAGWTQHVNDCADITLYPAANSWYMGANVPGKPRVFLPYCAGVDFYRLSCDEVVARDYLGFRLSGPDGSRCTDGVVRRLQPDVEMVLMEAVALDLPPMESMPVADARAFYAQMSEALPPGPDVGEIVDGVLPGAAGDLAYRLYRPPTPGPHPIVVYFHGGGYVLGDAISDDPLCRDLCVRSGAALISVDYRHAPEHRFPAAVDDGMAAVRWVADNARALGGIPGELAVCGWSAGGGIAAVVCQLARDLGGPNIVGQVLLAPCTSGDTVRASFAENADGYGLTTPLMQWFYDHYIDVADRSDPRFAPLLAADLSGLPPAIVVTAEFDPVRDDGEAYAAALKAAGVPTKYVCARGHTHQSPAMVDVVISGAPVRAQMADALRRFFAETRVSQPAS
>NZ_AP022582.1|WP_163683763.1|5040798_5041254_-|hypothetical-protein
MKTERNGDDGETRHEPAFRERWRDRQSAASRPGELIKQQERTEAGLVMLGVLLAAGALIAGTVSIARTEALPAVTQGMTVTASRAGDIPPARGAAVQFRDASGTTHGAVVVDVTATEVKAELDRPVSAPSGELVVPQGRQRLISVLMPRLR
>NZ_AP022582.1|WP_163683772.1|5052552_5052909_+|toxin-antitoxin-system-HicB-family-antitoxin
MDRYTYRAQWLPDYNEYLGVCIELPYMRREAPTAPQAVAAIEDAVKEHVEALRATGESPPEPLSERRYSGKFLVRTSPQLHARLALEAIEQGVPMNQWIVQKLSGRAPSETFGLSGYD
>NZ_AP022582.1|WP_163683773.1|5052921_5054472_-|SulP-family-inorganic-anion-transporter
MQDIEQLGNQPHDQTTNPRKDRVRSIIRHDLPASLVVFLVALPLSLGIAIASNAPVLAGLIAAIVGGIVVGALGGSPLQVSGPAAGLTVVVADLISDFGWGVTCLITVAAGALQVLFGLSRVARAALAISPVVVHAMLAGIGITIALQQAHVLLGGKSKSTAWHNLIGLPGQLIGAHRPGAILGVLVIVILVGWRWVPAKVRRIPGPLVAIVGVTVVSIVFPFDVRRIDLDGSPLDALQLPDLPHGNWGAVAIGVITVALIASVESLLSAVSVDRMHNGPRTDFNRELVGQGAANIVSGTVGGLPITGVIVRSSTNVNAGAKSRASALLHGVWILLFTVPFAELVEEIPTAALAGLLIVIGIQLLKPAHIETAMKHGDLAVYVVTAVSVVFLNLLHGVMIGLALAIALTGWRVIRAKVEAKPVDDEWQVVIEGAACTFLALPRLTRVLASIPAGSVVTVDVWVHYLDHAAHQAISDWQRQHEANDGTVHIRGRLETGHSPRRGTEPVEPERPEAAA
>NZ_AP022582.1|WP_163683774.1|5054714_5055740_-|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase
MAAQMREPKVVVLGGGSWGTTVASICARRGPTLQWVRSEETAKDINENHRNSRYLGDDAVLSDTLRATTDFAEAANSADVVVMGVPSHGFRGVLTELARELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIAREVGEGYAAAAVLAMPDQHLATRLSGLFRTRRFRVYTTDDVIGVEMAGALKNVYAISVGMGYSLGIGENTRALVIARALREMTKLGVAMGGNPETFPGLAGLGDLIVTCTSQRSRNRHVGEQLGAGKPIDEIIASMNQVAEGVKAASVIMEFANEFGLNMPIAREVDAVINHGSTVEEAYRGLIAEVPGHEVHGSGF
>NZ_AP022582.1|WP_083171674.1|5056270_5056573_+|PE-family-protein
MSYVNVDPEKLSAAASNLQSITAALSAGNAAAAGPTTAVVPAAADEVSALTAARFAVHAQRYQILSARAVAIHELLAAALASGAGSYAGTEAANAAASAL
>NZ_AP022582.1|WP_163683775.1|5056575_5057742_+|PPE-domain-containing-protein
MSANVDYALLPPEINSGRMYTGPGVGSLLAAATAWAELAAQLHASAASYRSVISALTGGPWLGPASLALAAAAATNVAWLRSSAESAELTFERAGAAVAAYETAFGLTVPPPVIAANRAVLASLIATNVLGQNSAAIATVEAEYFEMWAQDAAAMYGYVAASATATQLTDFAEPEEVTDPAGSARQAAAVAKAVGNSAHTGAQDVAANDPATPTFGNLKPIDEWISENTPLDDMAAMYSKYVVPYVSSGQVGVQTAQSFGQISNGITAMTTFGKGLLPAASSAAQAAGGGTNALGAAGAGLGNAGSAAAGLGRALPIGALSVPPSWAPVTAVTNPGVTTLTSAAPAAADGLHPFPMAPFGPMTGHTGWRQTPTYGFKPSVMTKPPAAG
>NZ_AP022582.1|WP_163683776.1|5057745_5059227_-|NAD(P)-binding-domain-containing-protein
MAPSEADYSDVIIVGAGISGIDAAYRIGERNPQLTYTILERRAQIGGTWDLFRYPGVRSDSSIFTLSFPFEPWTRQEGVADGVHIREYLVATARKYGIDRHIRFNSYVRSADWDSSTDTWTVTVEQDGVRKLLRGRFLFFGSGYYNYDEGYTPDFPGIETFGGVVVHPQHWPEDLDYTGKKIVVIGSGATAVTLLPSLSERAAKVTMLQRSPTYLISASKYGKVAAVARKVLPRKPAHLVVRMYSALTEAVFFALSRKAPGLVRWLLRRKAISSLPDGYDVDTHFKPRYNPWDQRMCLIPDADLYNAISAGRADVVTDHIDHFDTGGIALKSGGHLDADIIVTATGLQLQALGGTAISLDGNEIKTNDRFVYKAHMLEDVPNLFWCVGYTNASWTLRADITARATAKLLAHMAAHGYTHAYPHRGNEPMTEKPSWDINAGYVLRSVHALPKSGTRRPWNVRQNYLADAIDYRFDRIEEAMVFGRAADRAPLAG
>NZ_AP022582.1|WP_163683777.1|5059321_5059813_-|YajQ-family-cyclic-di-GMP-binding-protein
MADSSFDIVSKVERQEVDNALNQAAKELATRFDFRGTDTMIAWKGDEAIELTSSTEERVKAAVDVFKEKLIRRDISMKAFDAGEPQASGKTYKVSGTLKQGIDSEHAKKITKLIRDEGPKGVKTQIQGDEIRVSSKKRDDLQAVISMLKQADLDVALQFVNYR
>NZ_AP022582.1|WP_163683778.1|5059984_5060914_-|DMT-family-transporter
MSRADMAAILALCAALASAIGNVVRQRSAQEVTDKPVGHLALFGMLLRDRRWWMGGLGDIASYCLLAAALDKGSVLLVMSLQVTALLFALPIYARMSRHPVTRGEWIWAVLLTAALVVVISVGAPVGGQERAPAHVWLVVALVMAPPLLLGLLGARIWSDRPLAALLLAAVAGSLLAVFAVLMKGVVDILEHNPDQLWTRPELYGWVFCGAAGMIFHQSAYRAGALTASLPTIIAAKPIVGAVLGITVLGETLDAHGFDWVVLTVAAVLVIVATVGLAHGEAATVSAGAGRDIRIADEPKPSSPQRLSG
>NZ_AP022582.1|WP_163683779.1|5060932_5061820_-|SDR-family-NAD(P)-dependent-oxidoreductase
MPGWTAAELPSFAGRTVVITGANAGLGEVTARELARVGARVVLAVRNTDKGKAAAERMAGDVEVRQLDLQDLDSVRRFAEELGTVDVLVNNAGIMATKHAVTADGFEGQIGTNHLGHFALTNLLLPKLTDRVVTVSSLMHHFGYISLKDLNWRSRPYSAWLAYSQSKLANLLFTSELQRRLNAVGSPLRALAAHPGWSHTNLQGNSGRRLGDAAVLAVDRIVSTDADFGARQTLYAVSQDLPGDTYVGPRFGLYGRTQPTWRNWPAKRAGTATALWDLSEELTGTAFPLSASGLP
>NZ_AP022582.1|WP_163683780.1|5061911_5062898_+|retinol-dehydrogenase
MYLGVIVNPAARRNRRARGDRVAELRRIVGPWGEVHETASTEDLAKTLDEIHSRVTHLVGDGGDGALHWLINEMERCESDPERWPAFVPTNGGSVNAVARKAGVRGRPDAVIRALAAAAAADRPPPEIRLDTLQLDGETADGAAFHRLCFGLAAGGVGNRFYDMYYGKPDHGRGEVAKVIGRSFRDYLASKVGRSQATNYASVLFAPTSARVVIDGEELPTRTHRLLHAGAIDLRIGGPFRLFPKAEDPGALHFQAGEIRPSRIVAQLPAALTNGTVRGRRVRDVNGREMIIEADGEPLSPIIDGERFVGITKLVVRAGPLIRVARTG

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Crispr_ID: NZ_AP022582_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022582_4

5340469-5340628

Orphan

Consensus_repeat	Method
CTCGGCGGCGCCGACCTGCGCGGCG	PILER-CR

2 spacers

The CRISPR arrays of NZ_AP022582_4

>merge|NZ_AP022582|4|5340469-5340628|PILER-CR
CTCGGCGGTAACGACCTGCGCGGCGTCGACCTGAGCGGGTGCCGGTTACGGGAGGCCAGCCTGGTCGAGGCCGACCTGCGCAAGGCGGTGTTGCGCGGCGCCGACCTGTCCGGGGCGCGGGCGACGGGCGCCCGGCTCGACGGCGCCGACCTGCGCGGCG

>NZ_AP022582|4|1|5340469-5340628|PILER-CR
CTCGGCGGTAACGACCTGCGCGGCG	TCGACCTGAGCGGGTGCCGGTTACGGGAGGCCAGCCTGGTCGAGGCCGACCTGCGCAAGGCGGTG
TTGCGCGGCGCCGACCTGTCCGGGG	CGCGGGCGACGGGCGCCCGGCTCGACG
GCGCCGACCTGCGCGGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022582.1\|WP_163684076.1\|5334098_5334743_+\|nitroreductase	unknown	unknown	gnl\|CDD\|380311
NZ_AP022582.1\|WP_163684075.1\|5329271_5330615_-\|DUF1298-domain-containing-protein	unknown	unknown	gnl\|CDD\|274360
NZ_AP022582.1\|WP_163684103.1\|5350795_5351248_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022582.1\|WP_167527443.1\|5349240_5350665_+\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|223354
NZ_AP022582.1\|WP_163684107.1\|5352083_5353235_-\|homoserine-O-acetyltransferase	unknown	unknown	gnl\|CDD\|234678
NZ_AP022582.1\|WP_163685483.1\|5330815_5334061_+\|error-prone-DNA-polymerase	unknown	unknown	gnl\|CDD\|235553
NZ_AP022582.1\|WP_163684095.1\|5347296_5348142_+\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase	unknown	unknown	gnl\|CDD\|237637
NZ_AP022582.1\|WP_163684093.1\|5346039_5347257_-\|NADH:flavin-oxidoreductase	unknown	unknown	gnl\|CDD\|239201
NZ_AP022582.1\|WP_163685485.1\|5340743_5343266_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224054
NZ_AP022582.1\|WP_163684100.1\|5348441_5348945_-\|DUF732-domain-containing-protein	unknown	unknown	gnl\|CDD\|368380
NZ_AP022582.1\|WP_163684078.1\|5334746_5335211_-\|tRNA-(cytidine(34)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|223297
NZ_AP022582.1\|WP_163684105.1\|5351352_5352087_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|369777
NZ_AP022582.1\|WP_163684074.1\|5328096_5329230_-\|trehalose-phosphatase	unknown	unknown	gnl\|CDD\|273219
NZ_AP022582.1\|WP_163684085.1\|5339235_5339610_+\|DUF742-domain-containing-protein	unknown	unknown	gnl\|CDD\|283084
NZ_AP022582.1\|WP_163684092.1\|5343315_5345961_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224054
NZ_AP022582.1\|WP_163684088.1\|5339590_5340190_+\|ATP/GTP-binding-protein	unknown	unknown	gnl\|CDD\|225138
NZ_AP022582.1\|WP_163684080.1\|5335228_5335834_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|379312
NZ_AP022582.1\|WP_163684083.1\|5338833_5339229_+\|roadblock/LC7-domain-containing-protein	unknown	unknown	gnl\|CDD\|224929
NZ_AP022582.1\|WP_163684081.1\|5336080_5338837_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|340391
NZ_AP022582.1\|WP_163684098.1\|5348138_5348420_+\|DUF3017-domain-containing-protein	unknown	unknown	gnl\|CDD\|378602

Protein	Function_ID	Function_description	E-value
NZ_AP022582.1\|WP_163684076.1\|5334098_5334743_+\|nitroreductase	gnl\|CDD\|380311	cd02062, Nitro_FMN_reductase, nitroreductase family protein. Proteins of this family catalyze the reduction of flavin or nitrocompounds using NAD(P)H as electron donor in a obligatory two-electron transfer, utilizing FMN or FAD as cofactor. They are often found to be homodimers. Enzymes of this family are described as NAD(P)H:FMN oxidoreductases, oxygen-insensitive nitroreductase, flavin reductase P, dihydropteridine reductase, NADH oxidase or NADH dehydrogenase.	5.60712e-28
NZ_AP022582.1\|WP_163684075.1\|5329271_5330615_-\|DUF1298-domain-containing-protein	gnl\|CDD\|274360	TIGR02946, Putative_diacyglycerol_O-acyltransferase_Mb3115, acyltransferase, WS/DGAT/MGAT. This bacteria-specific protein family includes a characterized, homodimeric, broad specificity acyltransferase from Acinetobacter sp. strain ADP1, active as wax ester synthase, as acyl coenzyme A:diacylglycerol acyltransferase, and as acyl-CoA:monoacylglycerol acyltransferase. [Unknown function, Enzymes of unknown specificity].	3.71788e-94
NZ_AP022582.1\|WP_163684105.1\|5351352_5352087_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	6.11227e-25
NZ_AP022582.1\|WP_167527443.1\|5349240_5350665_+\|FAD-binding-protein	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	5.55404e-37
NZ_AP022582.1\|WP_163684107.1\|5352083_5353235_-\|homoserine-O-acetyltransferase	gnl\|CDD\|234678	PRK00175, metX, homoserine O-acetyltransferase; Provisional.	0
NZ_AP022582.1\|WP_163685483.1\|5330815_5334061_+\|error-prone-DNA-polymerase	gnl\|CDD\|235553	PRK05672, dnaE2, error-prone DNA polymerase; Validated.	0
NZ_AP022582.1\|WP_163684095.1\|5347296_5348142_+\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase	gnl\|CDD\|237637	PRK14193, PRK14193, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional.	0
NZ_AP022582.1\|WP_163684093.1\|5346039_5347257_-\|NADH:flavin-oxidoreductase	gnl\|CDD\|239201	cd02803, OYE_like_FMN_family, Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.	3.33721e-116
NZ_AP022582.1\|WP_163685485.1\|5340743_5343266_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	8.05718e-63
NZ_AP022582.1\|WP_163684100.1\|5348441_5348945_-\|DUF732-domain-containing-protein	gnl\|CDD\|368380	pfam05305, DUF732, Protein of unknown function (DUF732). This family consists of several uncharacterized Mycobacterium tuberculosis and leprae proteins of unknown function.	8.76307e-24
NZ_AP022582.1\|WP_163684078.1\|5334746_5335211_-\|tRNA-(cytidine(34)-2'-O)-methyltransferase	gnl\|CDD\|223297	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis].	2.04155e-77
NZ_AP022582.1\|WP_163684074.1\|5328096_5329230_-\|trehalose-phosphatase	gnl\|CDD\|273219	TIGR00685, Trehalose-6-phosphate_phosphatase, trehalose-phosphatase. Trehalose, a neutral disaccharide of two glucose residues, is an important osmolyte for dessication and/or salt tolerance in a number of prokaryotic and eukaryotic species, including E. coli, Saccharomyces cerevisiae, and Arabidopsis thaliana. Many bacteria also utilize trehalose in the synthesis of trehalolipids, specialized cell wall constituents believed to be involved in the uptake of hydrophobic substances. Trehalose dimycolate (TDM, cord factor) and related substances are important constituents of the mycobacterial waxy coat and responsible for various clinically important immunological interactions with host organism. This enzyme, trehalose-phosphatase, removes a phosphate group in the final step of trehalose biosynthesis. The trehalose-phosphatase from Saccharomyces cerevisiae is fused to the synthase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes. [Cellular processes, Adaptations to atypical conditions].	1.55283e-80
NZ_AP022582.1\|WP_163684085.1\|5339235_5339610_+\|DUF742-domain-containing-protein	gnl\|CDD\|283084	pfam05331, DUF742, Protein of unknown function (DUF742). This family consists of several uncharacterized Streptomyces proteins as well as one from Mycobacterium tuberculosis. The function of these proteins is unknown.	6.89016e-30
NZ_AP022582.1\|WP_163684092.1\|5343315_5345961_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	6.47007e-67
NZ_AP022582.1\|WP_163684088.1\|5339590_5340190_+\|ATP/GTP-binding-protein	gnl\|CDD\|225138	COG2229, COG2229, Predicted GTPase [General function prediction only].	5.81575e-62
NZ_AP022582.1\|WP_163684080.1\|5335228_5335834_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	2.21306e-16
NZ_AP022582.1\|WP_163684083.1\|5338833_5339229_+\|roadblock/LC7-domain-containing-protein	gnl\|CDD\|224929	COG2018, COG2018, Uncharacterized distant relative of homeotic protein bithoraxoid [General function prediction only].	9.84279e-32
NZ_AP022582.1\|WP_163684081.1\|5336080_5338837_+\|HAMP-domain-containing-protein	gnl\|CDD\|340391	cd00075, HATPase, Histidine kinase-like ATPase domain. This superfamily includes the histidine kinase-like ATPase (HATPase) domains of several ATP-binding proteins such as histidine kinase, DNA gyrase B, topoisomerases, heat shock protein 90 (HSP90), phytochrome-like ATPases and DNA mismatch repair proteins. Domains belonging to this superfamily are also referred to as GHKL (gyrase, heat-shock protein 90, histidine kinase, MutL) ATPase domains.	3.23915e-19
NZ_AP022582.1\|WP_163684098.1\|5348138_5348420_+\|DUF3017-domain-containing-protein	gnl\|CDD\|378602	pfam11222, DUF3017, Protein of unknown function (DUF3017). This bacterial family of proteins with unknown function appear to be restricted to Actinobacteria.	7.73781e-16

>NZ_AP022582.1|WP_163684088.1|5339590_5340190_+|ATP/GTP-binding-protein
MALRHSDAHSEMRPDSGAHASTKIVIAGGFGAGKTTFVGAVSEIMPLRTEAMLTDASTAVDALDATPDKRTTTVAMDFGRITLDEDLVLYLFGTPGQRRFWFMWDDLVRGAIGAIVLVDCRRLEDSFAAVDFFEHRNLPFLVAVNEFDGAPRYPVAEVREALTLPAHIPVITVDARDRRSATDALIAVSEYALTSLTAS
>NZ_AP022582.1|WP_163684085.1|5339235_5339610_+|DUF742-domain-containing-protein
MDEREPRPTARKGNLVRPYTLTAGRTGTDVELPVEAPIQTLQAGLVHRWPPDDAKGKIIQLCVGSPSVAEISARLDLPLGVTRVLVGDLVLSGYLRVHRTLSERSTRDERHELIGRTLRGLKAL
>NZ_AP022582.1|WP_163684083.1|5338833_5339229_+|roadblock/LC7-domain-containing-protein
MTSPDNLDWLVTRFAREVPGVAHALLVSVDGLPIAASEDLPRERADQLAAVASGLASLATGAAQLFEGGQVLQSVVEMQHGYLLLMRVGDGSHLATLAATSCDIGQIGYEMAILVERVGGVVQSTRRSGVS
>NZ_AP022582.1|WP_163684081.1|5336080_5338837_+|HAMP-domain-containing-protein
MTMFARPANPAEAAAPDTAQPSGAVAAPGKRPPAWSLSNWPVGWKVLAIVLVPLLLATVFGALRIEGAMANSSGLRLAAARADVVPVITKYMSALDVALVAGSTGRDVEGAKKNFEARKYELDTRLRDTDVSPEVRSGVNNLLDGGQMLVNKASDTGLGLRERVTLYAPILLTAEDVINASVRVDDEKIRAQTQGLSRAVGARGQMTMQKILVTRGAELPEPQLRTSMITLAGTEPSTLFGMSEVLGAGSPEAKTLQQQLVTRMAIMSDPASVLVDNADLLRSIQTTDETADQVIKDATASVTKSVHAQAADKRNAAIVDTVLVLSAIVIALGVVLLVARALVRPLRILRDGALKVAHTDLEEEIARVKAGGAEPTPQPLPVYTTEEIGQVAHAVDELHTQALLLAGDEARLRLLVNDMFETMSRRSRSLVDQQLSLIDRLERNEEDPERLDSLFRLDHLAARLRRNSANLLVLAGAQLARDQRDPVPLSTVLNAAVSEVEDYRRVEIAGLPDNSTLIGAAAGGAIHLFAELIDNALRYSPPSTTVRVSAARGGDGGVVVRIADAGLGMNDADRRIANMRLQAGGEVSPDNARHMGLFVVGRIAARHGIRVGLRGPAVNETGSGTTAEIYLPPAILEGGAQPVRTARIRAVSSPSAQLAAAIAAPDPTAEPTPEPAVQHAAENPAPPVTLLPRRNPGSSGITEVPAQPAEQPPRRHRRELPTPWWESGTPAAPAGPAEPEPKPAPARTASDTSAFFSARSREADKPATPAPSVPGPSIPAAPKSETTTPADDDVIYRRMLSEMLGDPHDLVNSPDLDWQSVWDRGWTLAAAAEDKPVESRTAEHGLPVRTPGARLVPGAANGTSLPDQDQPAASAREPQHAAAGRDPEAVRATFSSHFGGVHTGRSHARDASQGSDQE
>NZ_AP022582.1|WP_163684080.1|5335228_5335834_+|methyltransferase-domain-containing-protein
MVEQSLWMRKVAADPGHSHWYIERFRAMVRAGDDLAGEARFVDAMAPRGARILDAGCGPGRLGGYLAAAGHHVVGVDVDPALIEAAEQDHPGPRWLVGDLAELDLPARGIAEPFDVIVSAGNVMAFLAPSTRGRVLSRLRAHLADDGRAAIGFGAGRDYEFAEFLGDAAAAGFAPDLLLSTWDLRPFTDDSDFLVAVLRPA
>NZ_AP022582.1|WP_163684078.1|5334746_5335211_-|tRNA-(cytidine(34)-2'-O)-methyltransferase
MFKLMFYSPRIPPNTGNAIRTAAATGCELHLVEPLGFDLSEPQLRRAGLDYHDLASVTVHPSLQAAWDALSPARVFAFTAQSATSFADVGYRAGDVLLFGPEPTGLDATTLADPHITERVRIPMLAGRRSLNLSNAAAVAVYEAWRQHGYDGAV
>NZ_AP022582.1|WP_163684076.1|5334098_5334743_+|nitroreductase
MTLNLSVDEVLTTTRSVRKRLDFDKPVGRDVLMECLELALQAPTGSNSQGWQWVFVEDAEKRKAIGDVYLKNARDYLSAPAPQYGEGDTRGERMGKVRDSATYLAEHMHEAPVLLIPCIEGRDDQTPLGGVSFWASLFPAVWSFCLALRSRGLGSCWTTLHLLRDGERQVADVLGIPYDKYSQGGLFPIAYTKGTDFRPAKRLPAEQVTHWNGW
>NZ_AP022582.1|WP_163685483.1|5330815_5334061_+|error-prone-DNA-polymerase
MERVLNGKPRHAGVPVVPGEDAPLSPKRGTYRPPDDTRAPRSSVPYAELHAHSAFSFLDGASTPEELVEEAARLGLRALALTDHDGLYGAVRFAEAAAELDIRTVFGAELSLGRGARTETPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEKGKPHYDFDALTEAAGGHWHILTGCRKGHVRQALSNGGPDAAEQALADLVDRFGAGRVSVELTHHGHPLDDERNVALAALAPRFGVGVVATTGAHFAGPSRRRLAMAMGAIRARQSLDSAAGWLAPLGGSHLRSGDEMARLFAWCPDAVAAAAELGEQCAFGLALIAPQLPPFDVPDGHTEDSWLRQLTMTGARDRYGPADAAPRAYTQIEHELKVIAQLTFPGYFLVVHDIARFCRQNNILCQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDIDMDIESDQREKVIQYVYDRYGRDYAAQVANVITYRGRIAVRDMARALGFSQGQQDAWSKQLGHWDGLADSPDVEGIPPPVVDLANQIRNLPRHMGIHSGGMVICDRPIADVCPVEWARMENRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAIDLVAEHKGIDVDLARLDLSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRIFYDLVVEVALIRPGPIQGGSVHPYIRRRNGLDPVVYDHPSMEPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSKRSTERMRRLRGRFYDGMRALHGAPDEVIDRTYEKLEAFANFGFPESHALSFASLVFYSSWFKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVTVHGPDVNASLAHATLENAGTEVRLGLGTVRHIGDDLAERLVEERNTNGPFASLLDLTTRLQLSVPQTEALATAGAFACFGMSRREALWAAGAAATQRPDRLPGVGSSSHVPALPGMSELELAAADVWATGVSPDSYPTQFLRADLDAMGVVPAEKLLSVPDGDRVLIAGAVTHRQRPGTAQGVTFLNLEDETGMVNVLCTPAVWARHRKLANTAPAMLVRGQVQNASGAVTVVAERLGRITLAVGSRSRDFR
>NZ_AP022582.1|WP_163684075.1|5329271_5330615_-|DUF1298-domain-containing-protein
MAQVKALDTAFLTARDPDQHAGLAIGAVAIVDGAPDYLRLSRLLAERIRTIPRCTQLPRAHPPHQDWVDCPEFDLAQHVHRVAIPRPGDDAELAGAISHALERPLRPDRPPWECWVIEGLKGNRWAILMKTHHRLLGGSSPAHLLTRLCDDADDDAFVNTPVDKQLSRPSRRREGWADALWRASWTATGAVLAAVWPALRTQDRAAVLRRYATVRVPIADVDRVCRRFGVTINDVALAATTEGFRTVLLGRGEEPRADSLRALVPTPARSPYLPVEHDDPVQRLRAVQTRWNDKTTPPPHTGGIVESALNSLPTVVRDNVIELLSRLPQRAIVTLTTNVPGPRYRLRLMGQTMERVLPIPPTAVQLSTGVAVLSYGDELVFGITAEPGAAFDVKQLAAGIELGMARLVALSQDSVLLFSGRRRKRSPRAFPGRAPGPRPPFPGQARH
>NZ_AP022582.1|WP_163684074.1|5328096_5329230_-|trehalose-phosphatase
MPQPGPVVIDPRRHDAVLFDASEPTLDGRLREVGVATAVFSSPESLSGAADDLGARPGRCVVVTTDEAAVEAARAGGFALVIGVDTGHGDALRGAGADAVVADPREVTVRTGDRRMSQLPDALTALDDLAARRPAVFFDFDGTLSDIVNDPDAATPVAGATEALQQLAARCPVAVLSGRDLADVTKRVGVQGIWYAGSHGFELTAPDGAHHQNDAAATAVPVLERAAGELRERLGSVPGVVVEHKRFGVAVHYRNAARDRVGEVAAAVRAAGRRDGLRVTTGREVIELRPDLDWDKGKTLRWVLDHLTEAEAGLRTPVYLGDDITDEDAFDAIHDGGVPILVRHYDDGDRATAAEFALDSPARASEFTARLAGQLSR
>NZ_AP022582.1|WP_163685485.1|5340743_5343266_-|ATP-binding-cassette-domain-containing-protein
MLTVRSDRSKGSFAAGRDVVVGSDLRADLRVAHPLVARAHLLLRFDRGKWVALDNKSLNGLYVNGQRVPLVDIEDGQTINIGKPDGPRITFEIGHHTGSVGMLPPTTESIPVIAPPGDAGRAQRPPAPPRQPPARPPRPQPWQGPSRTTAVPIVRPDAATRSVPQSGGPPEVNQPTEIGVSGQAAEFPTTRVKNLGPDAERLTDRPGRPAWIGRALDNDIVIHDVLASRHHAFLTPTPAGPEIRDANSSNGTFVNGVKAASAVLSEGDVVTIGNVDLVFSGGILVRRQEAATRTGGLEVRGVDFAVNGKNLLEKISMTARPGTLTALIGGSGAGKTTLSRLIAGYATPTSGLVTFEGHNIHTEYASLRTRIGMVPQDDVVHRQLTVNQALGYAAELRLPPDTTKADREEVVAQVLDELGLTQHADTRVDKLSGGQRKRASVALELLTGPSLLILDEPTSGLDPALDLQVMTMLRQLADAGRVVLVVTHSLTYLDVCDQVLLMAPGGKTAFLGPPNQIGTVMGTTNWAQIFAKVGADPDEANRRFLAQNKPPPPVETEAPADLGVAPRTGMRRQFSTVARRQVRLVVSDRAYFVFLALLPFIMGALSLTVPGHTGFGYADPTSDSAGEAGTILTLLTMAAAFMGTALTIRDLIGERPIFRREQAVGLSTTAYLLAKIAVFCVFAVVQAAIATAIVVAGKGTPKRPAVLLGNATLELFVAVAATCVAAAMLGLLLSALARSNEQIMPLLVVSLMGQMVLSGGMVPVTNRIFLDQLSWVVPSRWGYAAQASTVDLWTVAPGPQNPRDSHFQHTPGAWLFDMGMLAALSVAYAGLVRWRIRLKH
>NZ_AP022582.1|WP_163684092.1|5343315_5345961_-|ATP-binding-cassette-domain-containing-protein
MSAPAPPVLTVRHDGSERTFAAGHDVVVGRDLRADMRITHPLISRAHLLLRFDQGRWLAIDNGSLNGTFVNGRRVPVVEIHDGQCLNIGNPDGPQLTFEVGRHQGMAGRPPQTESMGIPMAAQQSGMAWSAAPAGPPVAAPPGPPPGPAGRPPGWASPPRRPHPGAPGPRPAPPPQPTYAGAGRAPAPPPPPPNFPPQPKISGLASPQTEMSRGAAKQPEVANLATKMFQALRPSRSGALQKPSGALTIGRATDNDVVIQDVLASRHHAFLTQTPLGTEIRDAHSVNGTFVNGVRVGSAVLTEGDVVTIGNVDLVFTRGELLRRTEAATRTGGLEVNSVCFAVDHGKQLIDHISLTARPGTLTAIIGGSGAGKTTLSRLIVGYTSPTSGSVTFEGHDIHAEYASMRSRIGMVPQDDVVHRQLTVNQALNYAAELRLPPDTSKAERAQVVAQVLEELDMTKHAETRVDKLSGGQRKRASVALELLTQPSLLLLDEPTSGLDPALDRQVMLMLRQLADAGRVVLVVTHSVSYLDVCDQILLVAPGGKTAFCGPPDQVEAAMGTRNWADIFAKVGADPDEANRRFKERSQHSAKPPSPESPADLGEPPKTDFWRQLSTIARRQVRLVVSDRGYTIFLAVLPFLIGALSLTVKGPKPGLGPADPLGVAPTQPQYIMVLLNIGAVFMGTALTIRDLIGERPIFRREQAVGLSTTAYLMAKIAVFCVFATAQAAVATIIVRLGKGAPTAHPQFFGNSTFSLFVTVAGTCVASAMLGLLLSALAQSNEQIMPLLVVSIMSQLVFSSGMIPVYQRFGLEELAWLTPARWGYAAGASSIDFPSLVKVKQIPTNDPIWQHSKHIFVFDMAMLLLLSAAYTGFVRWHIRLKR
>NZ_AP022582.1|WP_163684093.1|5346039_5347257_-|NADH:flavin-oxidoreductase
MSTPPDVFSPAKLGPITLRNRTIKSATFEARTPDTLVTDDLIEYHRQPAAGGVGMTTVAYCAISPGGRTEGNGIWLRPEAVPGFRRLTDAIHAEGAAVSAQIGHAGPVANAKSNKAKALAPVRFFNPIGMRFAKKATRDDINDVIEGHANAARLAIEAGFDAVEIHLGHNYLASSFLSPLINRRDDEFGGSLENRAKVARGIVMAVRRAVEKEGTPIAVTAKLNMADGVRGGISTEESLTTAKWLQDDGGLDAIELTAGSSLVNPMYLFRGDAPLKEFAGAFKPPLSWGMRMTGKKFLREYPYREAYLLRDAKLFRAELTMPLILLGGITNRETMDLAMAEGFDFVAMARALLAEPDLINRIAADGAQHSVRSACTHCNQCMPTIYTRTRCVVTGAPDVLTGNRT
>NZ_AP022582.1|WP_163684095.1|5347296_5348142_+|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase
MGAITLDGKATRDEIFVDLKQRVAALTASGRTPGLGTILVGDDPGSQAYVRGKHADCAKVGITSIRRDLPADISTAALEDTIDELNANPDCTGYIVQLPLPKHLDENAALERVDPDKDADGLHPTNLGRLVLSVPAPLPCTARGIVHLLRRYDVEIAGAHVVIIGRGVTVGRPLGLLLTRRSENATVTLCHTGTRDLAAYTRQADIVVAAVGVPHMLTAEMVRPGAAVVDVGVSRTDNGLVGDVHPDVWEVAGHVSPNPGGVGPLTRAFLLSNVVELAERE
>NZ_AP022582.1|WP_163684098.1|5348138_5348420_+|DUF3017-domain-containing-protein
MNARSVVRAQWPILLVGLTFAAALVLVGANFWRRGSLLIGIGVGLAAALRLVLPDERSGLLVVRSKGIDFVTTATVATAMVYIAWTIDPLGTG
>NZ_AP022582.1|WP_163684100.1|5348441_5348945_-|DUF732-domain-containing-protein
MKAAARTHHWVWLFRNQPLTVRLLAVAAGLLTVASAFAAPAGADNPDDNFIDALNHAGIDFGEPGNAMSVGQSICPMLAQPGGNFAAAASSVSGRGMSPMMARMFTTIAIQTYCPEQMANLANGNLSVPQVPGMPGMAGQIPGMTGQIPGMTGQIPGMAGQIPSLPR
>NZ_AP022582.1|WP_167527443.1|5349240_5350665_+|FAD-binding-protein
MQRAISRQAFLRGAVGMLATGAVLGTARAAADPVTGWGGLASSIGGSVVLPTNSAQFATSKKVFNSFYDSSSPAAVVTVSSQADVQKALAFAAANNLKVAPRGGGHSYVGASSANGTLVLDLRGLPGGANFDGNNVTVTPATTLYAIQQALSGRAIPTGTCPTVGVAGLALGGGIGPDSRRAGLTCDALQSATVVLPSGDVVTASANDNPDLFWALRGGGGGNFGVTTSMTLSTFATADSDVVRLDFPPASATQVLVGWQSWLSAADRNTWGIVDLMVGSAPNCHVLATCPAGAGSGVVDALKSAVGVAPTSVSNKTMSRTDLMMFLAGGTSTPPARSFVAGSDVIGPVDSTAAHAIATAIGQWPSGAGQASVLVDPLGGAVADVAAGDTAFPWRNQSAVLQWYVEPAGNQVTAANAWLSSAHQAVQQISVGGYVNYLEAGGAPARYFGSNLSRLTTVRQKYDPNRIMFSGLNF
>NZ_AP022582.1|WP_163684103.1|5350795_5351248_+|hypothetical-protein
MFTQVLKRLAGAAVVAAGLCAVGTPGTAGADYPGVPEWYSQAQEHLANTANYMQAVVDAIKANDLGALRSACSAVHDEQTIGLQAHLPTPDPALTKALQSEINDFHTATHLCMSLGPNSTLADLDQADLFTQRAIDDLKTVNDILVEDLG
>NZ_AP022582.1|WP_163684105.1|5351352_5352087_-|methyltransferase-domain-containing-protein
MTRSRHDRSLSFGSAAAAYERGRPSYPPEAIDWLLPRGARHVLDLGAGTGKLTTRLVERGLDVVAVDPIPDMLEVLRTSLPETRALLGTAEGIPLPDDSVDVVLVAQAWHWVDPERAIPEVARVLRPGGRLGLVWNTRDERLGWVRELGEIIGSDGDRDRFDVALSDAFTEPERHQVEWTNYLTPQALIDLVASRSYCITSPTEVRTRTLDQVRELLATHPALANSTGLALPYVTVCIRATLAG
>NZ_AP022582.1|WP_163684107.1|5352083_5353235_-|homoserine-O-acetyltransferase
MTISDVPTQTLPAEGEIGLVHIGSLTTESGSVIDDVCIAVQRWGELSPTRDNVVVVLHALTGDSHITGPAGPGHPTGGWWDGVAGPGAPIDTDRWCAVATNVLGGCRGSTGPSSLARNGKPWGSRFPMISVRDQVEADIAALTALGIEQVAAVVGGSMGGARALEWMVGHPSRVRAGLLLAVGARATADQIGTQTTQIAAIKADPNWQGGDYHGTGRTPDTGLTIARRFAHLTYRGEAELDTRFGNDAQAGEDPASGGRYAVQSYLEHQGDKLLARFDAGSYVTLTEALNSHDVGRGRGGVRKALRGCPVPAVVGGITSDRLYPLRLQQELADLLPGCGGLQVVESICGHDGFLVESEAVGDLIRKTLDLALLTSEAEGTCRR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_AP022582_2	2.1\|1934250\|27\|NZ_AP022582\|CRISPRCasFinder	1934250-1934276	27	NZ_AP022582.1	2887849-2887875	2	0.926

1. spacer 2.1|1934250|27|NZ_AP022582|CRISPRCasFinder matches to position: 2887849-2887875, mismatch: 2, identity: 0.926

gatggtggcgacccgccgcgcccggcc	CRISPR spacer
gatggtggcgacccgcgtcgcccggcc	Protospacer
****************  *********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_AP022582_2	2.1\|1934250\|27\|NZ_AP022582\|CRISPRCasFinder	1934250-1934276	27	MK967377	Gordonia phage MagicMan, complete genome	21786-21812	2	0.926
NZ_AP022582_2	2.1\|1934250\|27\|NZ_AP022582\|CRISPRCasFinder	1934250-1934276	27	NC_031255	Gordonia phage Schwabeltier, complete genome	21787-21813	2	0.926
NZ_AP022582_2	2.1\|1934250\|27\|NZ_AP022582\|CRISPRCasFinder	1934250-1934276	27	KU998235	Gordonia phage Bowser, complete genome	21372-21398	3	0.889
NZ_AP022582_2	2.1\|1934250\|27\|NZ_AP022582\|CRISPRCasFinder	1934250-1934276	27	NZ_AP022607	Mycobacterium branderi strain JCM 12687 plasmid pJCM12687	492075-492101	3	0.889
NZ_AP022582_2	2.1\|1934250\|27\|NZ_AP022582\|CRISPRCasFinder	1934250-1934276	27	NZ_AP022607	Mycobacterium branderi strain JCM 12687 plasmid pJCM12687	509616-509642	3	0.889
NZ_AP022582_2	2.1\|1934250\|27\|NZ_AP022582\|CRISPRCasFinder	1934250-1934276	27	NZ_CP013744	Streptomyces sp. CdTB01 plasmid unnamed, complete sequence	156422-156448	4	0.852
NZ_AP022582_2	2.1\|1934250\|27\|NZ_AP022582\|CRISPRCasFinder	1934250-1934276	27	CP054927	Streptomyces fulvissimus strain NA06532 plasmid unnamed1, complete sequence	283437-283463	4	0.852
NZ_AP022582_2	2.1\|1934250\|27\|NZ_AP022582\|CRISPRCasFinder	1934250-1934276	27	MK061410	Gordonia phage Eyes, complete genome	21465-21491	4	0.852
NZ_AP022582_4	4.2\|5340584\|27\|NZ_AP022582\|PILER-CR	5340584-5340610	27	NZ_CP030864	Streptomyces globosus strain LZH-48 plasmid unnamed2, complete sequence	62904-62930	4	0.852
NZ_AP022582_4	4.2\|5340584\|27\|NZ_AP022582\|PILER-CR	5340584-5340610	27	MN234216	Streptomyces phage Gilgamesh, complete genome	101463-101489	4	0.852
NZ_AP022582_4	4.2\|5340584\|27\|NZ_AP022582\|PILER-CR	5340584-5340610	27	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	1202766-1202792	4	0.852
NZ_AP022582_2	2.1\|1934250\|27\|NZ_AP022582\|CRISPRCasFinder	1934250-1934276	27	NZ_CP012940	Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence	780366-780392	5	0.815
NZ_AP022582_2	2.1\|1934250\|27\|NZ_AP022582\|CRISPRCasFinder	1934250-1934276	27	NZ_CP012944	Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence	1114074-1114100	5	0.815
NZ_AP022582_2	2.1\|1934250\|27\|NZ_AP022582\|CRISPRCasFinder	1934250-1934276	27	NC_017575	Ralstonia solanacearum Po82 megaplasmid, complete sequence	1283754-1283780	5	0.815
NZ_AP022582_2	2.1\|1934250\|27\|NZ_AP022582\|CRISPRCasFinder	1934250-1934276	27	NZ_CP026308	Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence	1283698-1283724	5	0.815
NZ_AP022582_2	2.1\|1934250\|27\|NZ_AP022582\|CRISPRCasFinder	1934250-1934276	27	NZ_CP051295	Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence	772108-772134	5	0.815
NZ_AP022582_2	2.1\|1934250\|27\|NZ_AP022582\|CRISPRCasFinder	1934250-1934276	27	NC_016972	Streptomyces hygroscopicus subsp. jinggangensis 5008 plasmid pSHJG2, complete sequence	64423-64449	5	0.815
NZ_AP022582_2	2.1\|1934250\|27\|NZ_AP022582\|CRISPRCasFinder	1934250-1934276	27	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	2214441-2214467	5	0.815
NZ_AP022582_4	4.2\|5340584\|27\|NZ_AP022582\|PILER-CR	5340584-5340610	27	NZ_CP029209	Nitratireductor sp. OM-1 plasmid pOM-1, complete sequence	827504-827530	5	0.815
NZ_AP022582_4	4.2\|5340584\|27\|NZ_AP022582\|PILER-CR	5340584-5340610	27	NZ_CP022363	Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence	826451-826477	5	0.815
NZ_AP022582_4	4.2\|5340584\|27\|NZ_AP022582\|PILER-CR	5340584-5340610	27	NC_024970	Streptomyces aureofaciens strain CCM3239 plasmid pSA3239, complete sequence	53162-53188	5	0.815
NZ_AP022582_4	4.2\|5340584\|27\|NZ_AP022582\|PILER-CR	5340584-5340610	27	NZ_KJ396772	Streptomyces lavendulae subsp. lavendulae strain CCM3239 plasmid pSA3239, complete sequence	53162-53188	5	0.815
NZ_AP022582_4	4.2\|5340584\|27\|NZ_AP022582\|PILER-CR	5340584-5340610	27	NZ_CP027859	Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence	282305-282331	5	0.815
NZ_AP022582_4	4.2\|5340584\|27\|NZ_AP022582\|PILER-CR	5340584-5340610	27	NC_010510	Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, complete sequence	238404-238430	5	0.815
NZ_AP022582_4	4.2\|5340584\|27\|NZ_AP022582\|PILER-CR	5340584-5340610	27	NZ_CP024986	Streptomyces lavendulae subsp. lavendulae strain CCM 3239 plasmid pSA3239, complete sequence	187889-187915	5	0.815
NZ_AP022582_4	4.2\|5340584\|27\|NZ_AP022582\|PILER-CR	5340584-5340610	27	NZ_CP013054	Sinorhizobium americanum CCGM7 plasmid C, complete sequence	230974-231000	5	0.815
NZ_AP022582_2	2.1\|1934250\|27\|NZ_AP022582\|CRISPRCasFinder	1934250-1934276	27	NZ_CP015372	Pandoraea pnomenusa strain MCB032 plasmid unnamed 1, complete sequence	2005-2031	6	0.778
NZ_AP022582_2	2.1\|1934250\|27\|NZ_AP022582\|CRISPRCasFinder	1934250-1934276	27	NZ_CP015372	Pandoraea pnomenusa strain MCB032 plasmid unnamed 1, complete sequence	113386-113412	6	0.778
NZ_AP022582_2	2.1\|1934250\|27\|NZ_AP022582\|CRISPRCasFinder	1934250-1934276	27	NC_008765	Acidovorax sp. JS42 plasmid pAOVO01, complete sequence	55500-55526	6	0.778
NZ_AP022582_2	2.1\|1934250\|27\|NZ_AP022582\|CRISPRCasFinder	1934250-1934276	27	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	29255-29281	6	0.778
NZ_AP022582_4	4.2\|5340584\|27\|NZ_AP022582\|PILER-CR	5340584-5340610	27	NZ_AP014705	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence	677626-677652	6	0.778
NZ_AP022582_4	4.2\|5340584\|27\|NZ_AP022582\|PILER-CR	5340584-5340610	27	NZ_CP051543	Paracoccus sanguinis strain OM2164 plasmid pPspOM122, complete sequence	65478-65504	6	0.778
NZ_AP022582_2	2.1\|1934250\|27\|NZ_AP022582\|CRISPRCasFinder	1934250-1934276	27	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	1308562-1308588	7	0.741
NZ_AP022582_2	2.1\|1934250\|27\|NZ_AP022582\|CRISPRCasFinder	1934250-1934276	27	NC_013856	Azospirillum sp. B510 plasmid pAB510b, complete sequence	414620-414646	7	0.741
NZ_AP022582_2	2.1\|1934250\|27\|NZ_AP022582\|CRISPRCasFinder	1934250-1934276	27	NZ_CP032924	Agrobacterium tumefaciens strain 1D1108 plasmid pAt1D1108b, complete sequence	113554-113580	7	0.741
NZ_AP022582_2	2.1\|1934250\|27\|NZ_AP022582\|CRISPRCasFinder	1934250-1934276	27	NZ_CP024892	Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence	140940-140966	7	0.741
NZ_AP022582_4	4.2\|5340584\|27\|NZ_AP022582\|PILER-CR	5340584-5340610	27	NZ_CP044989	Deinococcus sp. AJ005 plasmid p380k, complete sequence	90638-90664	7	0.741
NZ_AP022582_4	4.2\|5340584\|27\|NZ_AP022582\|PILER-CR	5340584-5340610	27	NZ_CP016083	Streptomyces sp. SAT1 plasmid unnamed3, complete sequence	419075-419101	7	0.741

1. spacer 2.1|1934250|27|NZ_AP022582|CRISPRCasFinder matches to MK967377 (Gordonia phage MagicMan, complete genome) position: , mismatch: 2, identity: 0.926

gatggtggcgacccgccgcgcccggcc	CRISPR spacer
gatgccggcgacccgccgcgcccggcc	Protospacer
**** .*********************

2. spacer 2.1|1934250|27|NZ_AP022582|CRISPRCasFinder matches to NC_031255 (Gordonia phage Schwabeltier, complete genome) position: , mismatch: 2, identity: 0.926

gatggtggcgacccgccgcgcccggcc	CRISPR spacer
gatgccggcgacccgccgcgcccggcc	Protospacer
**** .*********************

3. spacer 2.1|1934250|27|NZ_AP022582|CRISPRCasFinder matches to KU998235 (Gordonia phage Bowser, complete genome) position: , mismatch: 3, identity: 0.889

gatggtggcgacccgccgcgcccggcc	CRISPR spacer
gacgcgggcgacccgccgcgcccggcc	Protospacer
**.*  *********************

4. spacer 2.1|1934250|27|NZ_AP022582|CRISPRCasFinder matches to NZ_AP022607 (Mycobacterium branderi strain JCM 12687 plasmid pJCM12687) position: , mismatch: 3, identity: 0.889

gatggt-ggcgacccgccgcgcccggcc	CRISPR spacer
-ctggtcggcgacccgccgcgcccggct	Protospacer
  **** ********************.

5. spacer 2.1|1934250|27|NZ_AP022582|CRISPRCasFinder matches to NZ_AP022607 (Mycobacterium branderi strain JCM 12687 plasmid pJCM12687) position: , mismatch: 3, identity: 0.889

gatggt-ggcgacccgccgcgcccggcc	CRISPR spacer
-ctggtcggcgacccgccgcgcccggct	Protospacer
  **** ********************.

6. spacer 2.1|1934250|27|NZ_AP022582|CRISPRCasFinder matches to NZ_CP013744 (Streptomyces sp. CdTB01 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.852

gatggtggcgacccgccgcgcccggcc	CRISPR spacer
gtaggtggcgaccagccgctcccggcc	Protospacer
*  ********** ***** *******

7. spacer 2.1|1934250|27|NZ_AP022582|CRISPRCasFinder matches to CP054927 (Streptomyces fulvissimus strain NA06532 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.852

gatggt-ggcgacccgccgcgcccggcc	CRISPR spacer
-ctgctcggcgacccgccgagcccggcc	Protospacer
  ** * ************ ********

8. spacer 2.1|1934250|27|NZ_AP022582|CRISPRCasFinder matches to MK061410 (Gordonia phage Eyes, complete genome) position: , mismatch: 4, identity: 0.852

gatggtggcgacccgccgcgcccggcc	CRISPR spacer
gacgccggcgacccgccgcgccccgcc	Protospacer
**.* .***************** ***

9. spacer 4.2|5340584|27|NZ_AP022582|PILER-CR matches to NZ_CP030864 (Streptomyces globosus strain LZH-48 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.852

tccggggcgcgggcgacgggcgcccgg	CRISPR spacer
gccggggcgggggcgacgggctcccag	Protospacer
 ******** *********** ***.*

10. spacer 4.2|5340584|27|NZ_AP022582|PILER-CR matches to MN234216 (Streptomyces phage Gilgamesh, complete genome) position: , mismatch: 4, identity: 0.852

tccggggcgcgggcgacgggcgcccgg	CRISPR spacer
cccggggcgcgcgcgaggggcgccccg	Protospacer
.********** **** ******** *

11. spacer 4.2|5340584|27|NZ_AP022582|PILER-CR matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 4, identity: 0.852

tccggggcgcgggcgacgggcgcccgg	CRISPR spacer
tcgtggacgcgggcgacgggcgcgcgg	Protospacer
**  **.**************** ***

12. spacer 2.1|1934250|27|NZ_AP022582|CRISPRCasFinder matches to NZ_CP012940 (Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.815

gatggtggcgacccgccgcgcccggcc	CRISPR spacer
gccggtggcgacccgccgcgccgtggc	Protospacer
* .*******************  * *

13. spacer 2.1|1934250|27|NZ_AP022582|CRISPRCasFinder matches to NZ_CP012944 (Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.815

gatggtggcgacccgccgcgcccggcc	CRISPR spacer
gccggtggcgacccgccgcgccgtggc	Protospacer
* .*******************  * *

14. spacer 2.1|1934250|27|NZ_AP022582|CRISPRCasFinder matches to NC_017575 (Ralstonia solanacearum Po82 megaplasmid, complete sequence) position: , mismatch: 5, identity: 0.815

gatggtggcgacccgccgcgcccggcc	CRISPR spacer
gccggtggcgacccgccgcgccgtggc	Protospacer
* .*******************  * *

15. spacer 2.1|1934250|27|NZ_AP022582|CRISPRCasFinder matches to NZ_CP026308 (Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.815

gatggtggcgacccgccgcgcccggcc	CRISPR spacer
gccggtggcgacccgccgcgccgtggc	Protospacer
* .*******************  * *

16. spacer 2.1|1934250|27|NZ_AP022582|CRISPRCasFinder matches to NZ_CP051295 (Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence) position: , mismatch: 5, identity: 0.815

gatggtggcgacccgccgcgcccggcc	CRISPR spacer
gccggtggcgacccgccgcgccgtggc	Protospacer
* .*******************  * *

17. spacer 2.1|1934250|27|NZ_AP022582|CRISPRCasFinder matches to NC_016972 (Streptomyces hygroscopicus subsp. jinggangensis 5008 plasmid pSHJG2, complete sequence) position: , mismatch: 5, identity: 0.815

gatggtggcgacccgccgcgcccggcc	CRISPR spacer
cagggtggcggcccgccgcacccggcg	Protospacer
 * *******.********.******

18. spacer 2.1|1934250|27|NZ_AP022582|CRISPRCasFinder matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.815

gatggtggcgacccgccgcgcccggcc	CRISPR spacer
gatgctgccgacccgccgcgcccagga	Protospacer
**** ** ***************.*

19. spacer 4.2|5340584|27|NZ_AP022582|PILER-CR matches to NZ_CP029209 (Nitratireductor sp. OM-1 plasmid pOM-1, complete sequence) position: , mismatch: 5, identity: 0.815

tccggggcgcgggcgacgggcgcccgg	CRISPR spacer
ccgccggcgcgggcgacggacgcccgg	Protospacer
.*   **************.*******

20. spacer 4.2|5340584|27|NZ_AP022582|PILER-CR matches to NZ_CP022363 (Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence) position: , mismatch: 5, identity: 0.815

tccggggcgcgggcgacgggcgcccgg	CRISPR spacer
cacggggcgcgggcgatggacgcccgc	Protospacer
. **************.**.******

21. spacer 4.2|5340584|27|NZ_AP022582|PILER-CR matches to NC_024970 (Streptomyces aureofaciens strain CCM3239 plasmid pSA3239, complete sequence) position: , mismatch: 5, identity: 0.815

tccggggcgcgggcgacgggcgcccgg	CRISPR spacer
gcgcgggcgcgggcggcgggcgcgcgg	Protospacer
 *  ***********.******* ***

22. spacer 4.2|5340584|27|NZ_AP022582|PILER-CR matches to NZ_KJ396772 (Streptomyces lavendulae subsp. lavendulae strain CCM3239 plasmid pSA3239, complete sequence) position: , mismatch: 5, identity: 0.815

tccggggcgcgggcgacgggcgcccgg	CRISPR spacer
gcgcgggcgcgggcggcgggcgcgcgg	Protospacer
 *  ***********.******* ***

23. spacer 4.2|5340584|27|NZ_AP022582|PILER-CR matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 5, identity: 0.815

tccggggcgcgggcgacgggcgcccgg	CRISPR spacer
cgcggggcgcgggcgccgggcgcgggg	Protospacer
. ************* *******  **

24. spacer 4.2|5340584|27|NZ_AP022582|PILER-CR matches to NC_010510 (Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, complete sequence) position: , mismatch: 5, identity: 0.815

tccggggcgcgggcgacgggcgcccgg	CRISPR spacer
gccggggcgcgggcgaggagcgccgga	Protospacer
 *************** *.***** *.

25. spacer 4.2|5340584|27|NZ_AP022582|PILER-CR matches to NZ_CP024986 (Streptomyces lavendulae subsp. lavendulae strain CCM 3239 plasmid pSA3239, complete sequence) position: , mismatch: 5, identity: 0.815

tccggggcgcgggcgacgggcgcccgg	CRISPR spacer
gcgcgggcgcgggcggcgggcgcgcgg	Protospacer
 *  ***********.******* ***

26. spacer 4.2|5340584|27|NZ_AP022582|PILER-CR matches to NZ_CP013054 (Sinorhizobium americanum CCGM7 plasmid C, complete sequence) position: , mismatch: 5, identity: 0.815

tccggggcgcgggcgacgggcgcccgg	CRISPR spacer
gccggggcgcgggcgacagccgcctcg	Protospacer
 ****************.* ****. *

27. spacer 2.1|1934250|27|NZ_AP022582|CRISPRCasFinder matches to NZ_CP015372 (Pandoraea pnomenusa strain MCB032 plasmid unnamed 1, complete sequence) position: , mismatch: 6, identity: 0.778

gatggtggcgacccgccgcgcccggcc	CRISPR spacer
agccgtggccaccagccgcgcccggcc	Protospacer
... ***** *** *************

28. spacer 2.1|1934250|27|NZ_AP022582|CRISPRCasFinder matches to NZ_CP015372 (Pandoraea pnomenusa strain MCB032 plasmid unnamed 1, complete sequence) position: , mismatch: 6, identity: 0.778

gatggtggcgacccgccgcgcccggcc	CRISPR spacer
agccgtggccaccagccgcgcccggcc	Protospacer
... ***** *** *************

29. spacer 2.1|1934250|27|NZ_AP022582|CRISPRCasFinder matches to NC_008765 (Acidovorax sp. JS42 plasmid pAOVO01, complete sequence) position: , mismatch: 6, identity: 0.778

gatggtggcgacccgccgcgcccggcc	CRISPR spacer
agccgtggccaccagccgcgcccggcc	Protospacer
... ***** *** *************

30. spacer 2.1|1934250|27|NZ_AP022582|CRISPRCasFinder matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.778

gatggtggcgacccgccgcgcccggcc	CRISPR spacer
tccgccggcgacccgccgcgcccgggc	Protospacer
  .* .******************* *

31. spacer 4.2|5340584|27|NZ_AP022582|PILER-CR matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 6, identity: 0.778

tccggggcgcgggcgacgggcgcccgg	CRISPR spacer
ggcggggcgcgggcgacggccgcgctc	Protospacer
  ***************** *** *

32. spacer 4.2|5340584|27|NZ_AP022582|PILER-CR matches to NZ_CP051543 (Paracoccus sanguinis strain OM2164 plasmid pPspOM122, complete sequence) position: , mismatch: 6, identity: 0.778

tccggggcgcgggcgacgggcgcccgg	CRISPR spacer
cccggggcgcgggcgacgatcgccacc	Protospacer
.*****************. ****

33. spacer 2.1|1934250|27|NZ_AP022582|CRISPRCasFinder matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.741

gatggtggcgacccgccgcgcccggcc	CRISPR spacer
ccaggaggcgacccgccgcgcccgcgt	Protospacer
   ** ******************  .

34. spacer 2.1|1934250|27|NZ_AP022582|CRISPRCasFinder matches to NC_013856 (Azospirillum sp. B510 plasmid pAB510b, complete sequence) position: , mismatch: 7, identity: 0.741

gatggtggcgacccgccgcgcccggcc	CRISPR spacer
ccacatggcgacccgccgcgcccagcg	Protospacer
    .******************.**

35. spacer 2.1|1934250|27|NZ_AP022582|CRISPRCasFinder matches to NZ_CP032924 (Agrobacterium tumefaciens strain 1D1108 plasmid pAt1D1108b, complete sequence) position: , mismatch: 7, identity: 0.741

gatggtggcgacccgccgcgcccggcc	CRISPR spacer
cggtctggcgacccgccgcgcccgaac	Protospacer
 .   *******************. *

36. spacer 2.1|1934250|27|NZ_AP022582|CRISPRCasFinder matches to NZ_CP024892 (Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence) position: , mismatch: 7, identity: 0.741

gatggtggcgacccgccgcgcccggcc	CRISPR spacer
cgcggaggcgacccgccgcgcccgaga	Protospacer
 ..** ******************.

37. spacer 4.2|5340584|27|NZ_AP022582|PILER-CR matches to NZ_CP044989 (Deinococcus sp. AJ005 plasmid p380k, complete sequence) position: , mismatch: 7, identity: 0.741

tccggggcgcgggcgacgggcgcccgg	CRISPR spacer
gacggggcgcgggcgacgggcgtggaa	Protospacer
  ********************.  ..

38. spacer 4.2|5340584|27|NZ_AP022582|PILER-CR matches to NZ_CP016083 (Streptomyces sp. SAT1 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.741

tccggggcgcgggcgacgggcgcccgg	CRISPR spacer
ggggcggcgcgggcgacgggcgccgcc	Protospacer
   * *******************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

308156 : 314743

Bacillus_phage(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_163674970.1\|308156_309080_+	SDR family oxidoreductase	W8CYX9	Bacillus_phage	4.1e-06	34.0
WP_163674973.1\|309014_310058_-	DNA polymerase IV	F1C5A5	Cronobacter_phage	9.6e-20	29.2
WP_163674975.1\|310065_310674_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_163684435.1\|310790_311321_+	NAD(P)H-dependent oxidoreductase	A0A2P0ZL77	Lactobacillus_phage	1.2e-05	34.5
WP_163674978.1\|311826_312066_+	glutaredoxin-like protein NrdH	V5UN81	Mycobacterium_phage	7.5e-21	65.8
WP_163684437.1\|312164_312608_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	Q4Z9B0	Staphylococcus_phage	4.3e-06	27.0
WP_163674981.1\|312577_314743_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	4.3e-208	51.2

DBSCAN-SWA_2

766937 : 776386

Indivirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_163676160.1\|766937_768212_+	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.1e-20	28.6
WP_163676164.1\|768217_769867_+	hypothetical protein	NA	NA	NA	NA
WP_163676167.1\|769848_770406_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	6.4e-15	32.5
WP_163684569.1\|770449_772840_+	RelA/SpoT family protein	A0A2I2L310	Orpheovirus	2.0e-12	37.9
WP_163676170.1\|772859_774629_-	protein kinase	A0A1V0SDC3	Indivirus	9.5e-12	27.6
WP_163676173.1\|774706_775606_-	peptidylprolyl isomerase	A0A1V0SCU1	Indivirus	6.5e-09	34.0
WP_163676176.1\|775723_776386_+	MBL fold metallo-hydrolase	A0A1X9I5D3	Streptococcus_phage	6.7e-19	32.0

DBSCAN-SWA_3

3063072 : 3070274

Acanthamoeba_polyphaga_moumouvirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_163681328.1\|3063072_3064026_+	NAD-dependent epimerase/dehydratase family protein	L7RCI0	Acanthamoeba_polyphaga_moumouvirus	5.9e-16	27.1
WP_163681330.1\|3064030_3065218_+	glycosyltransferase	A0A2P0VNG4	Tetraselmis_virus	3.1e-14	29.8
WP_163681332.1\|3065192_3066146_-	NAD-dependent epimerase/dehydratase family protein	A0A2K9KZK0	Tupanvirus	4.6e-69	43.1
WP_163681333.1\|3066155_3067472_-	nucleotide sugar dehydrogenase	A0A127AXI2	Bacillus_phage	1.7e-85	38.7
WP_163681336.1\|3067695_3068472_+	class I SAM-dependent methyltransferase	A0A2D1GAF7	Mycobacterium_phage	8.7e-26	46.0
WP_163681338.1\|3068546_3070274_-	FAD-dependent oxidoreductase	A0A1V0S9J5	Catovirus	4.8e-08	33.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_AP022582

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection