CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_AP022618	Mycolicibacterium insubricum strain JCM 16366	14 crisprs	cas3,DEDDh,csa3,c2c9_V-U4,WYL,DinG	0	4	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_AP022618_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022618_1

61425-61559

Orphan

Consensus_repeat	Method
CCGGGACCGCCCCCGACCAGCTGGGGCGGTTCGGGGAGGGTAGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP022618_1

>merge|NZ_AP022618|1|61425-61559|CRISPRCasFinder
CCGGGACCGCCCCCGACCAGCTGGGGCGGTTCGGGGAGGGTAGGCGCAGTTGGCGCGAGCGCAGCGAGTGCCGGCGGAGCCGGACCGACGCCGGGACCGCCCCCGACCAACTGGGGCGGTTCGGGGAGGGTAGGC

>NZ_AP022618|1|1|61425-61559|CRISPRCasFinder
CCGGGACCGCCCCCGACCAGCTGGGGCGGTTCGGGGAGGGTAGGC	GCAGTTGGCGCGAGCGCAGCGAGTGCCGGCGGAGCCGGACCGACG
CCGGGACCGCCCCCGACCAACTGGGGCGGTTCGGGGAGGGTAGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022618.1\|WP_083032220.1\|64557_65715_-\|acyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|173841
NZ_AP022618.1\|WP_083030871.1\|55600_56179_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|184281
NZ_AP022618.1\|WP_110810838.1\|56198_56801_-\|DUF4190-domain-containing-protein	unknown	unknown	gnl\|CDD\|379388
NZ_AP022618.1\|WP_083030865.1\|58867_61375_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236090
NZ_AP022618.1\|WP_163787709.1\|62644_63628_+\|DUF222-domain-containing-protein	unknown	unknown	gnl\|CDD\|367155
NZ_AP022618.1\|WP_083032228.1\|70502_71609_+\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|235596
NZ_AP022618.1\|WP_083032214.1\|69491_70451_+\|acyl-CoA/acyl-ACP-dehydrogenase	unknown	unknown	gnl\|CDD\|224871
NZ_AP022618.1\|WP_083032217.1\|67323_68466_+\|acyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|173841
NZ_AP022618.1\|WP_083030925.1\|40672_41593_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022618.1\|WP_083032222.1\|63766_64555_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|236110
NZ_AP022618.1\|WP_083032219.1\|65785_67324_+\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|236072
NZ_AP022618.1\|WP_083030873.1\|48945_52497_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372732
NZ_AP022618.1\|WP_083032212.1\|71627_72953_-\|MHS-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340927
NZ_AP022618.1\|WP_083030863.1\|61919_62582_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235095
NZ_AP022618.1\|WP_083030879.1\|39497_40676_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022618.1\|WP_083030866.1\|57805_58819_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022618.1\|WP_110810837.1\|56970_57591_-\|DUF4190-domain-containing-protein	unknown	unknown	gnl\|CDD\|379388
NZ_AP022618.1\|WP_083032216.1\|68533_69499_+\|acyl-CoA/acyl-ACP-dehydrogenase	unknown	unknown	gnl\|CDD\|173838
NZ_AP022618.1\|WP_083030877.1\|41592_44076_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022618.1\|WP_163787708.1\|46282_48943_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_AP022618.1\|WP_083032217.1\|67323_68466_+\|acyl-CoA-dehydrogenase-family-protein	gnl\|CDD\|173841	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.	2.35509e-134
NZ_AP022618.1\|WP_083030871.1\|55600_56179_-\|hypothetical-protein	gnl\|CDD\|184281	PRK13729, PRK13729, conjugal transfer pilus assembly protein TraB; Provisional.	0.00467821
NZ_AP022618.1\|WP_110810838.1\|56198_56801_-\|DUF4190-domain-containing-protein	gnl\|CDD\|379388	pfam13828, DUF4190, Domain of unknown function (DUF4190). This integral membrane domain is functionally uncharacterized. One of the membrane helices contains two GXXG motifs that are usually associated with dimerization.	5.67009e-13
NZ_AP022618.1\|WP_083030865.1\|58867_61375_+\|hypothetical-protein	gnl\|CDD\|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	9.25855e-07
NZ_AP022618.1\|WP_163787709.1\|62644_63628_+\|DUF222-domain-containing-protein	gnl\|CDD\|367155	pfam02720, DUF222, Domain of unknown function (DUF222). This family is often found associated to the N-terminus of the HNH endonuclease domain pfam01844. The function of this domain is uncertain. This family has been called the 13E12 repeat family.	4.75843e-27
NZ_AP022618.1\|WP_083032228.1\|70502_71609_+\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|235596	PRK05764, PRK05764, aspartate aminotransferase; Provisional.	3.09356e-152
NZ_AP022618.1\|WP_083032214.1\|69491_70451_+\|acyl-CoA/acyl-ACP-dehydrogenase	gnl\|CDD\|224871	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].	3.29119e-30
NZ_AP022618.1\|WP_083032219.1\|65785_67324_+\|AMP-binding-protein	gnl\|CDD\|236072	PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated.	0
NZ_AP022618.1\|WP_083030873.1\|48945_52497_-\|hypothetical-protein	gnl\|CDD\|372732	pfam13809, Tubulin_2, Tubulin like. Many of the residues conserved in Tubulin, pfam00091, are also highly conserved in this family.	1.39036e-57
NZ_AP022618.1\|WP_083032212.1\|71627_72953_-\|MHS-family-MFS-transporter	gnl\|CDD\|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.59363e-173
NZ_AP022618.1\|WP_083030863.1\|61919_62582_+\|hypothetical-protein	gnl\|CDD\|235095	PRK02983, lysS, bifunctional lysylphosphatidylglycerol synthetase/lysine--tRNA ligase LysX.	0.000381548
NZ_AP022618.1\|WP_083032220.1\|64557_65715_-\|acyl-CoA-dehydrogenase-family-protein	gnl\|CDD\|173841	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.	7.55664e-134
NZ_AP022618.1\|WP_110810837.1\|56970_57591_-\|DUF4190-domain-containing-protein	gnl\|CDD\|379388	pfam13828, DUF4190, Domain of unknown function (DUF4190). This integral membrane domain is functionally uncharacterized. One of the membrane helices contains two GXXG motifs that are usually associated with dimerization.	9.86578e-11
NZ_AP022618.1\|WP_083032216.1\|68533_69499_+\|acyl-CoA/acyl-ACP-dehydrogenase	gnl\|CDD\|173838	cd00567, ACAD, Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isobutyryl-CoA dehydrogenase (IBDH), glutaryl-CoA deydrogenase (GCD) and Crotonobetainyl-CoA dehydrogenase. The mitochondrial ACAD's are generally homotetramers, except for VLCAD, which is a homodimer. Related enzymes include the SOS adaptive reponse proten aidB, Naphthocyclinone hydroxylase (NcnH), and and Dibenzothiophene (DBT) desulfurization enzyme C (DszC).	1.77329e-25
NZ_AP022618.1\|WP_083032222.1\|63766_64555_-\|SDR-family-oxidoreductase	gnl\|CDD\|236110	PRK07831, PRK07831, SDR family oxidoreductase.	2.13722e-166

>NZ_AP022618.1|WP_083030865.1|58867_61375_+|hypothetical-protein
MTLPKIVSAILVLALTLIGLSLPPIAAADSLSTCPQGLDLPGYDSYSGYDPQSSTSTPTEGPNEAYNYKPIDDDARNLPANSDELDDDALNKLAQRLGNTKPESGSKDHMLLRWRDYKNGADPKYDFERWRTAYITILENNRIGAAFEKFIWDKLALGEGTNEGNWKRNAKLPGSVLKNSPRYDITNTYAATRKPKVDARIPPVGDRQIIEAKSGNTLSDHAKKQFLKNLDLMNQADARMIMLFGSTPTAETLAWMKKAIDEWKTNPDNANKTAPEICVRHVNSLPVGQSANSSGNSPSPAGVPTTDQSPDNPADAAEDQRIADTLNAEQDAKLEETAAAEGEETTPAETPAPTTEPDLTPVTTQAPKPTSQPRSTPTGGSPTGGVPTGSPAGTPAGSPAGTPAGTPAGAPAAAPSGAPATAPGYNAPVGAPATIPVVGTVPVNLGGIDFTSLQLRYVTANVDGKTGTQYAFQTGTLANDAPSYGGRRNATMAMDALNVWLALTPDKFWVNLKPTEPDRIIDADFGRTQAGRILLEADLAMKEVSGALQKSDTELGRNFMNALGGENKCFLGRRQWIEPLPASIHVDGDQLYILDAPLTVKLGHDDSDISPGQSCPGQDPAVTTHNGELYDQMIMPAVVKAVNNDPEFADLRRVYASRVAAEWYRTRNKPSQYSAQINSGKIDSWVMDWKPREVFDRYVTSFNNGTTTFTWTTQEGNTTWTHTRSWGGVDFSKVEMTDVGAEKFTQDYPQMAHNAAASLSTIVENNNQVWLGSATITGDPQQLWPMVRTPWTAFLVPTPAPARVIFYLAVITPVAVWGAVGVGFAWRRRRAGKAV
>NZ_AP022618.1|WP_083030866.1|57805_58819_+|hypothetical-protein
MTRDELAADWTGGIPFALETLVDDKDPDPITFDFSAESLTRLLAEVRLVMRDAADVLDTDDPEHRRGVLAYLGETFALVCGGSWDWDDEPGFAERGLPAVTDPVTLASIASTYFGFDDNPAGTPAGIPVVLSDAALGLAPVSPVHLLLAGVTDRDTDLWRDTYQELAGFVAGYSAAHPEWAPKQTDTPNMGEGPSIPGPSPVLNSWLMKWQNEFPSWAQRHPGEWDFSAESMDRLDELILGRVSDAASFAAAENRDLVEGACWYLGEGLIRRGADNGLPSRWVYRGWLKERGSPDLACFEVQSDDNTRNVTPFWSLSYSVKKRVHSAREDFDFWRGN
>NZ_AP022618.1|WP_110810837.1|56970_57591_-|DUF4190-domain-containing-protein
MSTGYPGPGGFPAPTEPQGEVNTLATLSVVFAFVFAPVGALLGHLALNQIKERNQAGRRRAVLGLTLSYVIILLTIIALLVWLLLLRGHGESEPTVPHQSTTTTTRTTTTAPPRTSTSVVTVEPTTRPTVRVEELRVGDCVEIQNLRPNPEEGESAQFIKAYRASCEVRDGVFQVTDVVPTEAQCRTSMLYNHEKTVFACYVKYAG
>NZ_AP022618.1|WP_110810838.1|56198_56801_-|DUF4190-domain-containing-protein
MPGMPGFPPGVPPAQPKLNTYAVLSPIFGVLLPPAGIVLGHLALPQIKRTGERGRPSAIAGLVIGYVLTVALIILLILSSIFGWLFFASDDGPTQPLATTATTSKAGVTVAPSTKTVTATTKAPARRRDKIELSQATVGMCVEIQSRDTGAYALDLFQVDCESMSGVYTVVSIASSGSACNTTYAAEPPDRSFAVCLNKY
>NZ_AP022618.1|WP_083030871.1|55600_56179_-|hypothetical-protein
MPPSNPFDFSDFGQSSAAPPSGGFGAPMAPPAGPQSSGFNPQSSGFNPPPTATRPGGGGFDPFGAGGDVIAPGGSPFGGSEGTPMIGDLTVAGPPTKLMFGALGVAILGVILGLVAIPLDNSVVLALLGWLLAGPAAIGMLAWFSAADTKRRMNSVYSAPAWLSNGYWAVLAVSAVGIALGAWQIALWAGRL
>NZ_AP022618.1|WP_083030873.1|48945_52497_-|hypothetical-protein
MRRFLVVGCGGSGGATLSYMMDQLRSELLAAGVHSLPTGWQFVHIDVPSGAESGPDGLANVPAQGGTYVGTGPQGSSYATLDSALSQRLAAEGALDAIGTWAPRSPEGVTNPISAGAGQYRAIGRMITLSKAGEVRQRLQTAWDQLFRVEAMSEMARLKVPGMGRFDPNEPPLVLVVSSMAGGAGASMALDICRLLTLVQGLDPKLMGVFMVTPDIFDSLPESARIGVRANALAMLGEIVASQSGAARDHDVRILRALGQQHGDGEPIPFARVFPVGRYVGADRTLFGDGSQNAVYRGLGRGLAGLMMSGTASDQFVSYDLGNTASPAGDRDLLGWGNKVWDPLPWGTYGFASLSMGRDRYAEYAAQRLARSAADKLLFGHLQPGNPASGTEQLDSLLDSQWGAICNGIGLPPTTGDENSRIRVLGGWMTNLALPPRQVAGVCNTIIERQLRPYLPNPAGMAGEQWVPIFRQAVANRRGPLAQAVNEAGYALAFAWHREFAERVNTAVTRAVADFSLPYARGMVDLLRRFIDDQLATAMGDLGSMGPKDIVALAPNVEGTLMSLHGVMANADQVLFTALDGFQGNIRRALYASASQKIAEVFKVFGGEVLAPLSAALSEAQVLLENARAEQPSDVGLARLATDQYVAWPSDADELVPGRFAEANNEVLLINSTAFKARYELDLPKALVSGPGSPPFYAAVAESTARVISGLWPTTGGVPAPGGLVDLTSTWVSRAFGSDPETGAALVPAMAQYDVHTRPAELLARARTYIARPGEAFDEFCKVSLRDFIQGVGASESELGSRRHDVVVKFNEALSLARPLASVNDQSLQAVHPGQQLEYRYKFSEIPFLGQAVANELADALKSNPRIDQATRDNYGRAMSDEDSVTHIDIFGSYPNYSPLAFDSVLKPVAQQWSSTAGPARVPFWRLRRSRPLQASLPMGDDERRTMTAGWFLGQVTGRIQIPPSPYTEPVRVYDDEHQQWVPFPNPLLTPPSEFTAQYDWLPAVLEGILLAIAQSLEPPAMRSLRPYRVLRELYDSNSQDPASGIVELAAVSRLADFLRNGSTGKLASRIPEIASATTVSERADAAVKWLETVRDLAAEYLPAGSPGAAEGGVFTTVTTRAKASKTPIFRDLAPDVYWATDTLCAKIREAESLVATPLAGATGSGGADGGGEDLHIPEGGTF
>NZ_AP022618.1|WP_163787708.1|46282_48943_-|hypothetical-protein
MSNPNSMTVLLVPRGESSEIISVLADYSAVELVDPFVWVDPADIGRTSIPATFVHGGRSHADVLQRILTEQRYQRVRVAVLVPADAPADWRAPRAAEQALEQAVRAAVVGTPITLLRILYTRGIPEPRGYDPAMVLEGWHNLLIAPEDSAGPTLGSVVVERLADPLDVATLVSPVVAAAAGLYSGIGRSVFDELPILPGHTVRAVRAYYRQLDALGVEDQLRIQLFDAGGRLPLPRSSAGNVVYVQDTGLAAQTAARALMTKHREVLRGSRMQVGATDVQAISSAEALKAFMSFLGAALRNAPAAWLSGMLGSVQSVLASTVQHAVFGGTDSAYSVVANAQVASWQELGRGADAMSSELGAQPGAGQLVQTDLSGLWNDYVNGALTLADGGRRSAAMEPIAVGAGIGVLPRAADVVPSAADAFTDIPASLAAVVGIPALAGGDVLGTAELRGRLESNFSDPAAGVEARHTFEALHQWDGTVGRSYAAQVGSIMADFMGRARAEVSTLVEQIRVAAARPDVDAQLRERQRIISLIISTAGWTVLVALIVLFCGLIFHWGHTWWTGEFVAWVGGSIVVIYFIAALILFIVGQRHLFAELSLRKSRLGELEAMQFNLRSAVQDLSRLSAAYGQLLAWNRVLGEVLRMPFGPVAPPRPRRPHILDGLPRSTQVGVAAPVETEAEATAHNLQRRLYGVGWLTGPWEQMLATAARQVREDPAALFRMGGVGSGSGLDGWSHAVATHQVQSEGATALWGRVQAMFDDPASGIAEALTAGVFVPTTGRQVSPAEFSAGLLDKRRASVPVPFDAALFTPAAATAGRGAVAVDEGDVARSGLEYRAVVVQVGEGLPSYEFAMFAQAVESHEFEPTTAIRALGTDGEDTPPSESMVF
>NZ_AP022618.1|WP_083030877.1|41592_44076_-|hypothetical-protein
MTDRFAQLTYTSFDTPGSAGGWQVKQTTGSITPAEQHVLVTGVHTTLNPVEPLPQYPTPEQIAALPRRLGYRPIDAGAAYWHTVPAGPDSTGRPGNVFAHVLLDRMPVPSAVRPIERWGSPGWLTPYGPTAVREAELGDRIPETTALVSTQAVVDFACDATVWRLGTACVLLDAVLAAMRSNSSVVLGVSSLEHAALWIGLVSRFMSTGTAAALSFSTFDRPDELTAGNTEFLIAVPESDLDACAERGFFVLGESEPVSLGALGGQPHRTSRGQQVPVTEWSAMAQVALIDPTDATVMFDQIDDAASRLDDTGLHPALPMALSVLAREEFADAVPEARSVVAEWAPPGLAVQPEVVALVEGEVVRRAGTTTEQAGRAAAAATGVLATALTGVYLTRACSDPAWLDRPGTLPLPQTGLSVEALGEPVCTDLVARLTALRGAGPIRLLRAADLLTAAGLGALAEPLLSSDIAPALANPNVGPDLIARLPGPVSPQLRAALAARLVGSPEAANNALRGLHPRLVSWLVDGQPRPTVSAAAAAEPGAAGWTATVLHAVRAVQSGSADPGDRKLAYWWLRRLGTGPDRLTPIAGTEGWTIAELLAAGGTTGPFPDRAAARALAAGAGDADTTELATRVIAAVPGDESVAVAAVWALSPADWVALNYLDSHFAAYVPFWDDVADLAPGAVNRAFLRRVLVLSVLGATVGARPPRLLAGAPIDDTLIAEAIGQVDTLLADGVIDPATLLAAAALSADSGLPSPGVGPVLAAVAPRWAGRVDPGAVAEAAARLAGPDGEGRRVSRMLKKQLSGWQAESANPVPAHPVPAQTQWSQ
>NZ_AP022618.1|WP_083030925.1|40672_41593_-|hypothetical-protein
MPIYLLGARTPRVEIPNEPLAISIAGQVGGAALYIAAEPGQHIVRVNAQLVVLPTVSGPITVGVEPAGIPAFPHGTVVHLGIGPESTSDLDPVQVTFEPVDVSGAGAMELAGLSPAGSVIEVEARAVADTPLGPLANMARTAARRGSGTRQRSRGGSLRIAVDASASMLPAFADGSVAAAVDVIIGVADVAGINQVDAVLVGSAPVGITAPLAELAQAVGRAQVRFSAGARWSAIPDGPRTVAITDGRDFAAGGRFPALRIGDDPRLAAAGPVLVPAPQGVPIDRFLTENTGELEKVAAALLRVLT
>NZ_AP022618.1|WP_083030879.1|39497_40676_-|hypothetical-protein
MIPGLVTKCPRCFSIIDDNAYLWTVSPNVPGQRRYADRVGAAYHGAPVDIGAMHEVRRPPGYHGPLPSSAMEASQALGGPAIEICPVCHFVLPTGWRSGQAICIAMAGARATGKSLYVAVLIKQLEQLCERLGVSMEPATPATANAYATIYERPLFEQRGLIPPTPASHTQASYQREPLVYSIGSWNGLRRFVVLRDVAGEDLEAGDLHAPHFHFFRNADALFFMFDPLRVDMIREQLHDLLPPQSFSGGDPRSVLSNLLLAVGDGRPRLAVILSKFDALRVLADVQGSAWSRVMSNPGAAFMRDSSSSKTYDDADGALLHEEVRSLLQRLHGGSILAAVENPASGVHLPHRFFVVSALGQPPVGNRLNHKGIAPFRCADPLRWVTSSFGAL
>NZ_AP022618.1|WP_083030863.1|61919_62582_+|hypothetical-protein
MLPGKLFAVSQLLGLVAALLVSTAAAALLALPELHYYYRSFSALTTLTVGFAAGAAVWAVVLLALTFGIGRRFRIAWLLTLANGVGLAATASAALVLRPGADVDWFAALSRATAALIVVAAAAILVLAVSPPARAWFATPDVVKPVSSTPHDGKPKTARPKRIRLKALVPNRLRSKGTVAAHTDEVTVVVRTMAPQAGQLSTPFPPHAPTPDPFDFNPFG
>NZ_AP022618.1|WP_163787709.1|62644_63628_+|DUF222-domain-containing-protein
MSSNGASTSVYTPPGNRRDERLRVLFDELSELCGQRNAVKLEPRPDTDPKPGPRPGIHKTGGDDYDNWRITLPHIESAKFAAALASHRDALFAQWTRDHDGRQPDDDERRGQVPDNEAPVPTNLDAFLRLIEHGWDTEATARPHGQHTTVVVHLDLATKIANLHLGPLLPDADRQYLTCDATCEVWFHRDGTLIGAGHRTRTINRRLRRALEHRDHTCVVPGCAATCGLHAHHLIHWDNGGPTELWNLVLVCPYHHRLHHRGVITITGPADRLKVTDAEGEELFGGSLAHPPQNPPPAVARYPGPTGERANWWWYNPFQPQAPPNIN
>NZ_AP022618.1|WP_083032222.1|63766_64555_-|SDR-family-oxidoreductase
MDLTVAPKEIDGHGLLAGKVVVVTAAAGTGIGSATARRALAEGADVVVSDHHERRLAETRDELAALGLGRVEAIVCDVTSTAAVDALIAGAAESMGRIDVLVNNAGLGGETPVIDMTDDEWDRVLNVSLTSVMRATRAALRYFRDAGHGGAIVNNASVLGWRAQHSQSHYAAAKAGVMALTRCSAIEAVEHGVRINAVSPSIARHKFLEKVSSADLLDRLAGGEAFGRAAEPWEVAATIAFLASDYASYLTGEVISVSSQHP
>NZ_AP022618.1|WP_083032220.1|64557_65715_-|acyl-CoA-dehydrogenase-family-protein
MIGVQEFRAEVREWLADNLVGEFAQLKGLGGPGREHEAFEERLAWNRHLAAAGLTCLGWPVEHGGRGLTVAHRVAFYEEYAHANAPDKVNHFGEELLGPTLIAFGTPAHQERFLPRILDVTELWCQGYSEPGAGSDLANVATTAELDGDSWVINGQKVWTSLAHWAQWCFVVARSEKGSKRHAGLSYLLVPLDQPGVDVRPIVQLTGDSEFNEVFFDNARTDASLVVGEPGDGWRVAMGTLTFERGVSTLGQQIRYARELSGIVELARENGTIDDPLTRERLTRAWVGLRGMRAYAMATMDNERPGQDNVSKLLWANWHRGLGELAMDVLGKPGLVLEGGASPDFNEWQRLYLFSRSDTIYGGSNEIQRNILAERVLGLPREVKG
>NZ_AP022618.1|WP_083032219.1|65785_67324_+|AMP-binding-protein
MTTVAQTTPAALDLVARDRPDQLAIISDDRTLTFADVRDEVRRAAAAMIGLGLGAGDRVGIWSPNSWHWVIAALATHWAGGIVVPLNTRYTAAEATDILARVDAPLLITAGTFLGADRSAALDRSELPELRHIVRIPVEANDGDWDAFVARGSDPALLAAADARAAAIRPEDPSDILFTSGTTGRSKGVVCAHRQSLSGAAAWAACGQMTGADRYLCINPFFHNFGYKAGILACLQTGAALIPQLTFEPEAAMAAVARHRVTVLPGPPTIYQMLLDHPRRGDHDLSSLRFAVTGAATVPVVLIERMQTELDIDIVLTAYGLTEASGFGTMCRADDDAVTVATTCGRPIAGFELRIDAPAGAGEVLLRGPCVMLGYLDDPDATAAAIDADGWLHTGDIGTVDAAGNLTITDRLKDMYISGGFNVYPAEVEQVLARLPGVAEVAVIGVPDERLGEIGKAFVVTLPGAELDEAAVVAHARANLANFKTPRTVEFLDTLPRNPGGKVVKPLLRERA
>NZ_AP022618.1|WP_083032217.1|67323_68466_+|acyl-CoA-dehydrogenase-family-protein
MDLAFDEETENFRTEVREFLAAHRDDFPTESYDTAAGFEQHRRWDKILYEAGLSVISWPAEYGGRDATLLQWVVYEEEYFAAGAPGRASANGTSMLAPTLFAHGTPEQLRRVLPKMASGEEIWAQAWSEPESGSDLASLRSTATKVDGGWKLNGQKIWSSRAPFGERGFGLFRSDPTAQRHHGLTYFMFDLHARGITVRPIHQLGGETGFGEIFLDDVFVPDEDVIGEPHQGWRAAMSTSSNERGMSLRSPARFTSAADRLVELWKSQPDGHIRDIFTDRVADAWIKAQAYRLQTFGTLTRLAGGGELGAESSVTKVFWSQLDVDIHQTALDLRGPDAELAGPWTDGYLFALGGPIYAGTNEIQRNIIAERLLGLPREPK
>NZ_AP022618.1|WP_083032216.1|68533_69499_+|acyl-CoA/acyl-ACP-dehydrogenase
MNFELDEQQRDFAASIDAALGAADVPSAVRAAGDGDIAPMAAVWSTLTDLGVPALMVAEEYDGIGAHPVDLAVACERLGYWCVPGPVAESIAVAPILLAKDERSTALAAGELIVTAAIAPDQPRAVNADFAGLTLVGADGRVGEAAVGERHASVDPSRALFDVTPAGKDWSADTERAAAFGALATSACLIGAAQAMLDTSVAYAKQRSQFGRVIGSYQAIKHKLADIHIAVELARPLVYGAALALADDATTTRRDVSAAKTAAADAGLLAARNSLQTHGAIGFTQEHDLSLLLLRTQALRAAWGDPTLHRRRVLEELADHE
>NZ_AP022618.1|WP_083032214.1|69491_70451_+|acyl-CoA/acyl-ACP-dehydrogenase
MSEERALLIQTVRDLVGKHAGPEAVRAAMASPKGYDERLWQLLCEQVGAAALVVPEDLGGAGGALADAAAVLTELGRNLVPTPLLGSTLAELALLAGQPVDADAREKLEALAAGESIGAVVFDPEYVVNGDIADVVIGADSGVLTRWVDFEATAQPTMDATRPLAKLRAIQTTALGADPGLGDLARLLVAAEAVGAATRCLELTVEYTKERVQFGRPIGSFQALKHRMADLYVLVQTAGAVVDSCLDDPSAESAALAFVTATEAFSAVAAEAIQLHGGIAITAECDIQLYFKRAHANSQLFGTVGAALAQLEPVALTTA
>NZ_AP022618.1|WP_083032228.1|70502_71609_+|pyridoxal-phosphate-dependent-aminotransferase
MDVWLAAAERQCTHGDLVNLSAGQPSAGAPEPVRAAAAAAITANELGYTVALGIPELRAAIAGSYRRYGLSVDAEDVVVTTGSSGGFLLAFLACFDAGDRVAFASPGYPCYRNILSALGVEVVELPCGPQTRFQPTVAMLEAAGRLDGVIVASPANPTGTVIAPAELAAIAAWCDANDVRLISDEVYHGLVYDGAPATSCAWETSRSAVVANSFSKYFAMTGWRLGWLLVPEELRRAVDCLTGNFTICPPVLSQIAAVAAFTPEAIAEADGHLRHYGANRERLLTGLREIGIDRIAPPDGAFYVYADVSAFTDDSMAFGARLLAETGLAVAPGIDFDTRNGNRFIRLSFAGPAADIDEALRRLGPWLP
>NZ_AP022618.1|WP_083032212.1|71627_72953_-|MHS-family-MFS-transporter
MTAPNEPTGLRRVVVASMAGTVVEWYEFFLYGTAATLVFAKVFFPQTGSDLDAVLAAFVTYAVGFFARPLGGVVFGHFGDRYGRKNLLQFSLLLVGVATFGMGCLPTFGQIGYWAPALLVVLRFVQGFAVGGEWGGAVLLVAEHSPNRARGFWASWPQAGVPVGNMLATVVLLVLTGVLSESAFLSWGWRVAFWLSAVVVLIGYYIRTKVTDAPIYLAAQREAEQLARSSLGIVEVIRRYPRGVFTAMGMRFAENIMYYLVVTFSITYLKLHAGVATGSILWYLLVAHAAHFIAIPLVGRASDRIGRRPVYFAGAVLTATWGFFAFPMMDSGNYAVITAAVVIGLLFHALMYAPQPALMAEMFPTRMRYSGVSLGYQVTAIVAGSLAPIIAVKLLADFGSSVPIAIYLAGACVVTLIALAFARETAGIDLHDLDRADAATR

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Crispr_ID: NZ_AP022618_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022618_2

356320-356464

Orphan

Consensus_repeat	Method
CCGGCACTCGCTACGCTCGCGCCAACTCCGCCTTCGCTCGCCGAACCACCCGATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP022618_2

>merge|NZ_AP022618|2|356320-356464|CRISPRCasFinder
CCGGCACTCGCTACGCTCGCGCCAACTCCGCCTTCGCTCGCCGAACCACCCGATTCAGTCACGGGTGGTCCCGGTATCGCTCCGGCTCCGCCGGCACTCGCTACGCTCACGCCAACTCCGCCTTCGCTCGCCGAACCACCCGATT

>NZ_AP022618|2|2|356320-356464|CRISPRCasFinder
CCGGCACTCGCTACGCTCGCGCCAACTCCGCCTTCGCTCGCCGAACCACCCGATT	CAGTCACGGGTGGTCCCGGTATCGCTCCGGCTCCG
CCGGCACTCGCTACGCTCACGCCAACTCCGCCTTCGCTCGCCGAACCACCCGATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022618.1\|WP_083031552.1\|343808_344864_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022618.1\|WP_110810881.1\|354951_356169_-\|tRNA-guanosine(34)-transglycosylase-Tgt	unknown	unknown	gnl\|CDD\|234642
NZ_AP022618.1\|WP_163787729.1\|363046_363502_-\|lipoprotein-LpqH	unknown	unknown	gnl\|CDD\|368465
NZ_AP022618.1\|WP_083031562.1\|357641_359027_-\|wax-ester/triacylglycerol-synthase-family-O-acyltransferase	unknown	unknown	gnl\|CDD\|274360
NZ_AP022618.1\|WP_083031563.1\|359131_360373_-\|sulfotransferase	unknown	unknown	gnl\|CDD\|379204
NZ_AP022618.1\|WP_083031565.1\|361527_362184_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_AP022618.1\|WP_083031583.1\|357070_357577_+\|lipoprotein-LpqH	unknown	unknown	gnl\|CDD\|368465
NZ_AP022618.1\|WP_110810879.1\|342346_343749_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_AP022618.1\|WP_083031554.1\|345160_346411_-\|restriction-endonuclease-subunit-S	unknown	unknown	gnl\|CDD\|341158
NZ_AP022618.1\|WP_083031568.1\|364281_364746_-\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|223663
NZ_AP022618.1\|WP_133052949.1\|350246_351293_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|227308
NZ_AP022618.1\|WP_083031566.1\|362312_363011_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|370445
NZ_AP022618.1\|WP_083031556.1\|348370_348943_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022618.1\|WP_083031559.1\|353738_354635_+\|tRNA-glutamyl-Q(34)-synthetase-GluQRS	unknown	unknown	gnl\|CDD\|235573
NZ_AP022618.1\|WP_083031555.1\|346407_348147_-\|SAM-dependent-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|223363
NZ_AP022618.1\|WP_083031561.1\|356498_356951_+\|lipoprotein-LpqH	unknown	unknown	gnl\|CDD\|368465
NZ_AP022618.1\|WP_083031569.1\|364750_365266_-\|tRNA-adenosine-deaminase-associated-protein	unknown	unknown	gnl\|CDD\|274869
NZ_AP022618.1\|WP_083031557.1\|348907_350203_-\|protein-kinase-family-protein	unknown	unknown	gnl\|CDD\|270622
NZ_AP022618.1\|WP_083031564.1\|360369_361464_-\|DUF1214-domain-containing-protein	unknown	unknown	gnl\|CDD\|377698
NZ_AP022618.1\|WP_083031558.1\|352622_353681_-\|ATP-dependent-DNA-ligase	unknown	unknown	gnl\|CDD\|236191

Protein	Function_ID	Function_description	E-value
NZ_AP022618.1\|WP_110810881.1\|354951_356169_-\|tRNA-guanosine(34)-transglycosylase-Tgt	gnl\|CDD\|234642	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional.	1.61209e-174
NZ_AP022618.1\|WP_163787729.1\|363046_363502_-\|lipoprotein-LpqH	gnl\|CDD\|368465	pfam05481, Myco_19_kDa, Mycobacterium 19 kDa lipoprotein antigen. Most of the antigens of Mycobacterium leprae and M. tuberculosis that have been identified are members of stress protein families, which are highly conserved throughout many diverse species. Of the M. leprae and M. tuberculosis antigens identified by monoclonal antibodies, all except the 18-kDa M. leprae antigen and the 19-kDa M. tuberculosis antigen are strongly cross-reactive between these two species and are coded within very similar genes.	3.8448e-06
NZ_AP022618.1\|WP_083031557.1\|348907_350203_-\|protein-kinase-family-protein	gnl\|CDD\|270622	cd00180, PKc, Catalytic domain of Protein Kinases. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. PKs make up a large family of serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and more than 500 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase.	7.76925e-33
NZ_AP022618.1\|WP_083031563.1\|359131_360373_-\|sulfotransferase	gnl\|CDD\|379204	pfam13469, Sulfotransfer_3, Sulfotransferase family.	4.63247e-33
NZ_AP022618.1\|WP_083031565.1\|361527_362184_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	3.16742e-45
NZ_AP022618.1\|WP_083031583.1\|357070_357577_+\|lipoprotein-LpqH	gnl\|CDD\|368465	pfam05481, Myco_19_kDa, Mycobacterium 19 kDa lipoprotein antigen. Most of the antigens of Mycobacterium leprae and M. tuberculosis that have been identified are members of stress protein families, which are highly conserved throughout many diverse species. Of the M. leprae and M. tuberculosis antigens identified by monoclonal antibodies, all except the 18-kDa M. leprae antigen and the 19-kDa M. tuberculosis antigen are strongly cross-reactive between these two species and are coded within very similar genes.	3.6477e-22
NZ_AP022618.1\|WP_110810879.1\|342346_343749_+\|IS3-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	3.07313e-23
NZ_AP022618.1\|WP_083031554.1\|345160_346411_-\|restriction-endonuclease-subunit-S	gnl\|CDD\|341158	cd17269, RMtype1_S_PluTORF4319P-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Photorhabdus luminescens S subunit (S.PluTORF4319P) TRD2-CR2. The recognition sequence of Photorhabdus luminescens S subunit (S.PluTORF4319P) is undetermined. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases.	6.75271e-48
NZ_AP022618.1\|WP_083031568.1\|364281_364746_-\|nucleoside-deaminase	gnl\|CDD\|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	1.06784e-54
NZ_AP022618.1\|WP_133052949.1\|350246_351293_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|227308	COG4974, XerD, Site-specific recombinase XerD [DNA replication, recombination, and repair].	0.00193511
NZ_AP022618.1\|WP_083031566.1\|362312_363011_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|370445	pfam09339, HTH_IclR, IclR helix-turn-helix domain.	1.09013e-08
NZ_AP022618.1\|WP_083031559.1\|353738_354635_+\|tRNA-glutamyl-Q(34)-synthetase-GluQRS	gnl\|CDD\|235573	PRK05710, PRK05710, tRNA glutamyl-Q(34) synthetase GluQRS.	7.08501e-124
NZ_AP022618.1\|WP_083031555.1\|346407_348147_-\|SAM-dependent-DNA-methyltransferase	gnl\|CDD\|223363	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms].	5.4128e-74
NZ_AP022618.1\|WP_083031561.1\|356498_356951_+\|lipoprotein-LpqH	gnl\|CDD\|368465	pfam05481, Myco_19_kDa, Mycobacterium 19 kDa lipoprotein antigen. Most of the antigens of Mycobacterium leprae and M. tuberculosis that have been identified are members of stress protein families, which are highly conserved throughout many diverse species. Of the M. leprae and M. tuberculosis antigens identified by monoclonal antibodies, all except the 18-kDa M. leprae antigen and the 19-kDa M. tuberculosis antigen are strongly cross-reactive between these two species and are coded within very similar genes.	4.62162e-10
NZ_AP022618.1\|WP_083031569.1\|364750_365266_-\|tRNA-adenosine-deaminase-associated-protein	gnl\|CDD\|274869	TIGR03941, conserved_hypothetical_protein, putative tRNA adenosine deaminase-associated protein. This model describes a protein family about 200 amino acids in length with only five invariant residues, including an Arg, a Ser-Asp pair, and two Gly residues. Members always are found exclusively in Actinobacteria, and always adjacent to homologs of TadA, a tRNA-specific adenosine deaminase from Escherichia coli. Homology, phyletic pattern, and gene neighborhood together suggest a housekeeping function in tRNA metabolism. [Unknown function, General].	6.04164e-47
NZ_AP022618.1\|WP_083031562.1\|357641_359027_-\|wax-ester/triacylglycerol-synthase-family-O-acyltransferase	gnl\|CDD\|274360	TIGR02946, Putative_diacyglycerol_O-acyltransferase_Mb3115, acyltransferase, WS/DGAT/MGAT. This bacteria-specific protein family includes a characterized, homodimeric, broad specificity acyltransferase from Acinetobacter sp. strain ADP1, active as wax ester synthase, as acyl coenzyme A:diacylglycerol acyltransferase, and as acyl-CoA:monoacylglycerol acyltransferase. [Unknown function, Enzymes of unknown specificity].	5.85924e-163
NZ_AP022618.1\|WP_083031564.1\|360369_361464_-\|DUF1214-domain-containing-protein	gnl\|CDD\|377698	pfam06742, DUF1214, Protein of unknown function (DUF1214). This family represents the C-terminal region of several hypothetical proteins of unknown function. Family members are mostly bacterial, but a few are also found in eukaryotes and archaea.	0.00363932
NZ_AP022618.1\|WP_083031558.1\|352622_353681_-\|ATP-dependent-DNA-ligase	gnl\|CDD\|236191	PRK08224, ligC, ATP-dependent DNA ligase; Reviewed.	0

>NZ_AP022618.1|WP_110810881.1|354951_356169_-|tRNA-guanosine(34)-transglycosylase-Tgt
MGDRLPGRRGRTGTLRTPHGEIATPAFVPVGTKATVKAMLPETVKSLGAQAVLANAYHLYLQPGADIVDEAGGLGRFMNWPGPTFTDSGGFQVLSLGSGFRKVLAMDTERVRADDVIAKGKDRLARVDDDGVTFTSHLDGSTHRFTPEVSMGIQHQLGADIIFAFDELTTLINTRKYQEDSVARTHAWAIRCLVEHHRLRSAAPQRPAQALFGVIQGAQYEDLRRAATRGLVDIGEQPGPAEGLSFDGYGIGGALEKQNLGTIVGWVVDELPEDKPRHLLGISEPDDLFAAIEAGADTFDCVSPSRVARNAAIYSHAGRYNVTGARYKRDFTPLDPECDCYTCANYTRAYIHHLFKAKEILSATLCTIHNERFTISLVDRIRASITDGTFDELRAEVLGRYYRDR
>NZ_AP022618.1|WP_083031559.1|353738_354635_+|tRNA-glutamyl-Q(34)-synthetase-GluQRS
MTRCTGAGRFAPSPSADLHIGNLRTAVLAWLFARSTGRRFLLRVEDLDDRTLPEVGERQVADLAAIGITWDEPPQYQSSHPERYNTVVEQLLEADMAYECFCSRKEILAAPRAPHAPEGAYPGTCRDLTATERADRRAASGRPPALRLRSQRTEFTVTDLLHGEYSGVVDDFVLRRFDGVPAYNLAVVLDDGASGVDQVVRGDDLLPSAPRQAYLASLLDLPRPVYAHVPLVRGADGKRLAKRDGPVSLGQIGVPVALAEIAGSLGYTAVTLDGMLAEFDPARLPRQPWIYRPATLPG
>NZ_AP022618.1|WP_083031558.1|352622_353681_-|ATP-dependent-DNA-ligase
MQLPVEPPVQPMLAKSAAALPTGGSAMPGGWCYEPKWDGFRALVFRDGAEIELQSRSGKDLGRYFPELLDALRDEIAPRCVLDGEIVVPRQVDGMTRLDWEALSARIHPADSRIHLLAAETPAHFIGFDALADGDRALLEGPFADRRQALTALLPGGQWCHLTRSTGDPELAAQWLSTFEGAGLDGVIAKRRDGHYLPGKRDMVKLKHSRDADCVVIGYRIHKSGMGLGSMLLGLYDEAGDLQMVGGAASFTTAARVELLAELEPLRLAEDLVRDGEPSRWNSAADKRWIPIRPERIAEVGYDQMEGAGPGRRFRHAVTFRRWRPDREPSSCTFGQLDVPNRYDLYDVLESR
>NZ_AP022618.1|WP_133052949.1|350246_351293_-|tyrosine-type-recombinase/integrase
MTWLEGTEDDFVEYKIRRTDHLKFPDSVGGSTWNKAVFALRGLYDWAVNRQIPIGPNGPVITVSPVPPGNGTLRVPGVRATAPYVRRDRDRWIVPGTYRLWRDVGLRGHGVERLGDYHWRATVEENSFRGRTSLRNAAFADFLYGTGLRVQEAGSLLLAELPDPGVIEAKLPATIAKYSKPRMWYGAPTVMRTVRTYVKVARAAAIRRAHREGRYEALEDIVWVRQVRPARKGTLDAVCDDGTVLSLSSLPSSGRRNLFWLRDGRPEPMALWLNEAGTPFHHESWHGVFDDANDRLLAAIGSRDGPLGDPLAVTPHSLRFSFALAMAVQLHQRLTVLLVGLESSDLRR
>NZ_AP022618.1|WP_083031557.1|348907_350203_-|protein-kinase-family-protein
MVTPGERQLARVVRQYDDDYLNDDYLDMYSGSFGFQVPLERAFACIHERLDIEFDFINQKARNGASGHFNAENSRRLIHLIDEVDELRRALAKVGQSMTVAPEYQRVLDGAATWLVDSGGSPIPEGLTPIVVEKYDAVFGLADASIEIADRSTAALTLVGEGSYAIVHKFTDPNYGITFARKKLKQAADGRDLARFRREFEVMKGLDFPYILDVYRHDDADNAYVMEYCGSTLEEYVKRRNNQGQFGFQARRRIALQFLYGLNYLHWNDICHRDLSMRNVLLRVFAEGAVTVKLSDFGLAKPSGSEFTKTETEIRGTFVDPALDTFKDYKQVNDIYAVGFVLSYLFKGSDTCFPRALRSETSSRNARTQTRRGGISRLWTSRRRSKPSTETGSERWCDSCGLSPPLAGLVHGPRRSMILPLLAPCVRGFRF
>NZ_AP022618.1|WP_083031556.1|348370_348943_+|hypothetical-protein
MAEAPGDRDEGLPSSLQEYFYVWCADLIAPLTGGQQQQLLDAIMLGHWGGPWPRRRQIQRLVEQAAGLITSDAIVGEITALYGHSVDKMLEHLDDPDYPASRENLIQQLGRHPYTDELIPKVDAALKAGAVAPSEHQDICDRALRAPLLPALVPAPLQFPDLPRDYPESFDECRRRYPDSEAESPDARRE
>NZ_AP022618.1|WP_083031555.1|346407_348147_-|SAM-dependent-DNA-methyltransferase
MSKLGNFVWGIADQLRGVYKPHQYGGVILPFTILRRLDCVMEPTRDEVRDLAAKYADGALAVQVKRKTGLGFYNTSPFDFTRLLEDPEGLRANLMDYTTGFSANIDVFERFKFENELATLDEKNRLYLVCSQFAKVDLNPDVVSNAEMGDLFEHLIYKFAEASNEEAGEHYTPRDAIRLMVDLLFAEDGDALREPGTVRTIYDPTAGTGGMLSVAEERLLERNPDARLRLYGQEINDQSYAICKSDMIVKGQDADNIRLGDTLSDDMFWDRTFDFCMSNPPYGVDWKAAQEAVKKEALHQGSRFSHGLPAIGDGQMLFLCHLASKMRPAHDGGGRAGIVLNGSPLFNGAAESGPSQIRQWLLESDLVEAIIALPTNMFFNTGIATYIWLLDNTKRPERRGTVQLIDATSFWTKMRKSLGAKSRELDEAARDKILALYDAFDDADPGFSKVFTANDFGYWTISVERPLLTETGKVSTDRKGNPKPDPKKRDTENIPFTYGGNTDGDAGCAATIKAYFDAEVLPHVPDAWVDTAKTKVGYEIPFTRHFYRYVPPRPLAEIDADLEKQVAKIMELLREVEVR
>NZ_AP022618.1|WP_083031554.1|345160_346411_-|restriction-endonuclease-subunit-S
MTPARFIGRHRSVEPLLTDLPPSWEVRRFKALLERSNVRNEDLSAPMMSLKSTGDVVLRSSLGNNQEPDDASLPRYLVAGVNELVVNPMWLVGGAIGVSAARGAVSPDYRVFTPRGEIAPRYLHYVVRSQPYIDQYLLYTRAQTTFDRRVQQPDLDNMPLPVPPIEEQRAIADFLDRETARIGTLIEEQQRLIELLQERRQSLVALTLLRGQAPGVGLRASGDSRLGDIPAHWRLVPTRYLCTITTGSEDSGNAADDGEYPFYVRGREILRIGHYSFDCEAVMTPGDGQGGTGKVFHYFDGKFQAHQRVYVFKDFHGVLGRYFYLFLSTFLRPVALAGSNTVTMESLRRPVLADFVVALPPIDEQRRIAAYLDEQTSKIDTLIAEAERFVELSRERRSALITAAVTGQIDVSTPAA
>NZ_AP022618.1|WP_083031552.1|343808_344864_+|hypothetical-protein
MARDAFYQASANSGVAIRLPCGKDDDFASVWKMLTPHLQSYLDLAPADVTERLQAAVDKYEDIVEMADAVTPDCVARGLKVLANSVPLVVILDEFDRIGAWDDTVLFADLIKMLSDDLVKCTVFIVGVADNVAGLLAGHASIDRALRQVHMPRMRPEELHDVVVGGFDRLETLSGVRITLSPGAINAIVKLSQGFPYYTHLLAGSIGELALRSKKYNVTEYDVFAALVRATSEAAHSIRVAYTDAVASVKPAQFGLTLLACALAEVDELGFFAPANLREPLSELSGKVRTTPSYLAHLKRFADAPLYILDTRGEGRKSRYRFHDPLMKPFVMMKGLNDGIIKFPMPDDSES
>NZ_AP022618.1|WP_110810879.1|342346_343749_+|IS3-family-transposase
MDSTRPRAGGPQRRRSFSPADKLAHLAAYEQACETNDGGGYLRREGLYSSLISEWRKQRDAGVLDGKPAGAKVGRLTAEQVEIARLKRELDKTNKRLTTTEAALEIMGKAHALLESLRERGAGQQADEALMDAWNELRTHGVSTRVAAVLTGMHRSTALRRAKPAPAPRDPVARVPVNKLTTAECARVLDELNSARFVDTTPMQVWATLLDEDTYLCSISTMYRILGAHKQVKERRRLARHRKAVCPELVATAPRQVYSWDITKLAGPVKGVYYDAYVMIDIYSRYIVGVHVHARECGVLAKELMEQIFGTYGIPHVVHADRGTSMTSNSVAGLLAELGVTRSHSRPKVSNDNPYSESWFKTLKYAPTFPDRFESIHHARDFMDSFVAWYNHEHHHSSIGLHTPADVFYGLAAVKDTQRRIVLADARARHPQRFGRDHAPKIIDLPEAAAINPPKPTEQEDQTAAA
>NZ_AP022618.1|WP_083031561.1|356498_356951_+|lipoprotein-LpqH
MKNVVTAAAVCAAGMLTVVGCSNSESGSTGSGTLRLGDTDLGKVTAVTCDTTDNLTTLTIETGDNTGEKAVKKSVVKLSAEGTPTVMSVRIGEVGTTEPALLYSSAAAEDPPTATHQGNQYTVRGTGLGTTAGDPNRPVNTAFDIDVHCP
>NZ_AP022618.1|WP_083031583.1|357070_357577_+|lipoprotein-LpqH
MTLAVGGVAIVALSLTGCSKSNDKESTETTGTSASASSKAETPAAEAPAGKPEAGHASMKIGDGEAKEVSGAAVCTVAGGSMNIAIGGGDTGVAAVVAEDGSAVHSVGLGSTDGLTGLAYQESMPNGGSATATKDDKTYTISGEAIGFDAANPTAPAKRAFVLVVTCP
>NZ_AP022618.1|WP_083031562.1|357641_359027_-|wax-ester/triacylglycerol-synthase-family-O-acyltransferase
MQLISPVDSMFLLAESREHPMHVAGLQLFEPPEGAGPEFLLDIHEQMVAHTHFNPTFRTHPATVLGGVVDLAWSVDDEVDIEYHLRRSALPTPGRVRDLLELTGRLHGSLLDRHRPLWEAHLIEGLNDGRFAVYTKVHHALLDGVSASRTMQRSLSNDPDDTTVRVPWDLPMGRPKPQADDDGGRSLLGMASGAFGAAAGVVGTALGLAPSTLKVARAALLDNQLTLPFQAPKTMLNVKIGGARRFAAQSWSLERIQRIKRAAGVTVNDVVLAMCAGALRAYLIEENALPDTPLIAMVPMSLREDDAAGGNQVGALLCNLGTDIEDPSERLKVVSGSMRDNKSVFAGLPKLETLALSAINIAALGLGAVPGFVSTAPPPFNLVISNVPGPREQMYFNGAKLVGNYPVSIVLDNMALNITLANNADNLEFGFIGCRRSVPHLQRLLTHVEDSLVALEEAIPG
>NZ_AP022618.1|WP_083031563.1|359131_360373_-|sulfotransferase
MSTRPPSITFTDLSAPVYSEDARAIREGLAGYGATLTLTPQALREAAVARTGLDDFGDDDFAERLDVLCESLRTEAGLGDTGTGVVFEQLVGNLVNRLRLEALIGEHPEILDEQIVAPIVICGLPRTGTTHLHNLLAADPGLRHLPYWESLEPFPTGEPGDPGPRRERCAAGVGLIDTVMPEFKRMHEMTVDHAHEEIQLLANDISGMLFETTYHLPGFAAHYRAHDQRPSYRYLKRSLAAMQWLRGGKRWVLKSPQHLEQFPALLDTFGDATFVVTHRDPVEVVRSMITMICYSARMAVDEPDVGKLAARWLDRTDNLLNGCLRDRDVLPADRSVDIRFEDFMADEKGTVAAIYRLARQPLDGTAQQAMADFLTEHPRGRYGGVDYDMAALGLDPEEIAERFRAYRERFVAP
>NZ_AP022618.1|WP_083031564.1|360369_361464_-|DUF1214-domain-containing-protein
MTAGASTPEPAPDLSTAFAELLDEVRAAETRITEAQPPLAEADILDGYRLALSLLRVAVDAYVWGDKDKPILVDVISPYLKWGGDNSDAFYRLAPVDPQRSYVVRGNRGDAIYLSMTVYGGPGGGHYSTRIVGTINDRDLTFDDDGNFEFTIGPAPGPGPRLQTAPDAEFMLTRDYLTDPVGGRRPEWRIETIDPPARRHDDREDLARRFRSAKTWLHEQLSMLPVRVDTTNELCDPYPVPSVTYGWAAGDAAYSMGSYRLEPGQALVIDGTSPPCVFWNLCLWNPFLHTYDYTHERVTINGATVDYNDDGSWRIVIAETDPGHPNWVSTAGRSQGLMWLRWFLPERTPDRPLCRVVDIAEVSR
>NZ_AP022618.1|WP_083031565.1|361527_362184_-|response-regulator-transcription-factor
MRAVLADDSALFREGVARVLADAGLTIVGSAADAPALLELVAEHRPEVVVTDIRMPPTCTTEGIEAALQIRRDHPGTGVLLLSAHVDVVHAMRLLQDTPSGVGYLLKDRVSDLATFVADVRSVAEGGTVIDPEVVEGLLGRRQRSGPGELTPRESEVLSLMAQGRSNGAIATELTLSARTVEANINSIFTKFGLPPDDATNRRVAAVLRYLQGDRVAG
>NZ_AP022618.1|WP_083031566.1|362312_363011_+|helix-turn-helix-domain-containing-protein
MPVVIEEELTQRGSGRGVLETSSLVVDAVAGARRGIGITALAAQTGLPKSTVHRIAGQLTESGLLERVGQRYFIGATVGRWGRSHRPARELHQVAMLPSIRLGQLSRGLVGLVIVSGETPETVLTYSTDALPVSVDLTTDAWRATAVGRVLGFGPGGPVRHDIGPALVTEECESVPGVSCVAGELTLPGLGCPAALCTLFFRPTLPAAAPGQLVSAMRAVERNWRMALEDVG
>NZ_AP022618.1|WP_163787729.1|363046_363502_-|lipoprotein-LpqH
MTIALTGIIVAAVAGCSHGETTATDPVSGESTMGAAAESPSATAESTGSVLVDGVDQHISGPVSCDGVDNIPTITIGTRVPTAVVKLGSFDNPTVTEIQVHAEDYLLGSPMSGASVTKDGKTYHVTATAQRIIVSNVKIEKVPVDITATCP
>NZ_AP022618.1|WP_083031568.1|364281_364746_-|nucleoside-deaminase
MRVLDDEALIRAALDAASAAGADDVPIGAVIVDADGVELARAANARERLGDPTAHAEILALREAAARHGDGWRLEGATLAVTVEPCTMCAGALVAARVGRLVFGAWEPKTGAVGSLWDVVRDRRLSHRPQVRGGVLEAECAAPLVEFFATHRAD
>NZ_AP022618.1|WP_083031569.1|364750_365266_-|tRNA-adenosine-deaminase-associated-protein
MGAQRASAPEADHPELFGISVVQEDGKWRCAALPATASEGLPAAETQLRELRAAGAVFGLLDIDHEFFVIVRPAPAGTRLLLSDATAALDYDLAAEVLERLDADIDDEELEDSEPFEVGDLEVLSDLGLPAGVLGVILTETELYADEQLTRIAREMGFGAEFAAVLDAFDR

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Crispr_ID: NZ_AP022618_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022618_3

821372-821495

Orphan

Consensus_repeat	Method
GCGTCGGCGGCCATCGCCCGGCTCGTGCGTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP022618_3

>merge|NZ_AP022618|3|821372-821495|CRISPRCasFinder
GCGTCGGCGGCCATCGCCCGGCTCGTGCGTTCGTGACGCGCGGAGCCGGCACAGCACGGCCGGGGGATGGCTGTTCGGCGCCCGTTGATCGAGCGTCGGCGGCCATCGCCCGGCTCGTGCGTTC

>NZ_AP022618|3|3|821372-821495|CRISPRCasFinder
GCGTCGGCGGCCATCGCCCGGCTCGTGCGTTC	GTGACGCGCGGAGCCGGCACAGCACGGCCGGGGGATGGCTGTTCGGCGCCCGTTGATCGA
GCGTCGGCGGCCATCGCCCGGCTCGTGCGTTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022618.1\|WP_083033092.1\|818679_820395_-\|dihydroxy-acid-dehydratase	unknown	unknown	gnl\|CDD\|234861
NZ_AP022618.1\|WP_110810946.1\|827485_828046_-\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|274805
NZ_AP022618.1\|WP_083033101.1\|826119_826737_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022618.1\|WP_083033109.1\|831937_833014_-\|UPF0104-family-protein	unknown	unknown	gnl\|CDD\|223469
NZ_AP022618.1\|WP_163787762.1\|814393_816631_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|226951
NZ_AP022618.1\|WP_083033008.1\|813656_814334_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_AP022618.1\|WP_083033099.1\|824041_826072_-\|M13-family-metallopeptidase	unknown	unknown	gnl\|CDD\|226118
NZ_AP022618.1\|WP_083033090.1\|818113_818683_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022618.1\|WP_133052993.1\|812208_812628_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237871
NZ_AP022618.1\|WP_083033087.1\|816812_817382_-\|TIGR00645-family-protein	unknown	unknown	gnl\|CDD\|179964
NZ_AP022618.1\|WP_110810940.1\|813407_813638_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022618.1\|WP_083033098.1\|822849_823911_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022618.1\|WP_083033093.1\|820458_821115_+\|DUF305-domain-containing-protein	unknown	unknown	gnl\|CDD\|367619
NZ_AP022618.1\|WP_083033096.1\|821730_822768_+\|L,D-transpeptidase	unknown	unknown	gnl\|CDD\|240446
NZ_AP022618.1\|WP_110810947.1\|831139_831499_+\|heme-binding-protein	unknown	unknown	gnl\|CDD\|374603
NZ_AP022618.1\|WP_083033102.1\|826733_827429_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022618.1\|WP_083033106.1\|827982_830910_-\|MMPL-family-transporter	unknown	unknown	gnl\|CDD\|225272
NZ_AP022618.1\|WP_083033088.1\|817441_817894_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022618.1\|WP_083033107.1\|831508_831904_-\|DUF3054-domain-containing-protein	unknown	unknown	gnl\|CDD\|378616
NZ_AP022618.1\|WP_083033011.1\|812631_813177_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_AP022618.1\|WP_083033092.1\|818679_820395_-\|dihydroxy-acid-dehydratase	gnl\|CDD\|234861	PRK00911, PRK00911, dihydroxy-acid dehydratase; Provisional.	0
NZ_AP022618.1\|WP_110810946.1\|827485_828046_-\|XRE-family-transcriptional-regulator	gnl\|CDD\|274805	TIGR03830, transcriptional_regulator_XRE_family, putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.	0.00953642
NZ_AP022618.1\|WP_083033109.1\|831937_833014_-\|UPF0104-family-protein	gnl\|CDD\|223469	COG0392, COG0392, Predicted integral membrane protein [Function unknown].	3.35491e-38
NZ_AP022618.1\|WP_110810947.1\|831139_831499_+\|heme-binding-protein	gnl\|CDD\|374603	pfam16525, MHB, Haemophore, haem-binding. MHB is a coiled-coil molecule that binds free haem in mycobacterial cytoplasm to deliver it to membrane proteins for shuttling through the membrane.	2.48086e-38
NZ_AP022618.1\|WP_083033008.1\|813656_814334_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.88125e-25
NZ_AP022618.1\|WP_083033099.1\|824041_826072_-\|M13-family-metallopeptidase	gnl\|CDD\|226118	COG3590, PepO, Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones].	0
NZ_AP022618.1\|WP_133052993.1\|812208_812628_+\|hypothetical-protein	gnl\|CDD\|237871	PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional.	0.00346603
NZ_AP022618.1\|WP_083033087.1\|816812_817382_-\|TIGR00645-family-protein	gnl\|CDD\|179964	PRK05208, PRK05208, hypothetical protein; Provisional.	7.03787e-89
NZ_AP022618.1\|WP_083033093.1\|820458_821115_+\|DUF305-domain-containing-protein	gnl\|CDD\|367619	pfam03713, DUF305, Domain of unknown function (DUF305). Domain found in small family of bacterial secreted proteins with no known function. Also found in Paramecium bursaria chlorella virus 1. This domain is short and found in one or two copies. The domain has a conserved HH motif that may be functionally important. This domain belongs to the ferritin superfamily. It contains two sequence similar repeats each of which is composed of two alpha helices.	1.05287e-49
NZ_AP022618.1\|WP_083033096.1\|821730_822768_+\|L,D-transpeptidase	gnl\|CDD\|240446	cd13431, LDT_IgD_like_1, IgD-like repeat domain of mycobacterial L,D-transpeptidases. Immunoglobulin-like domain found in actinobacterial L,D-transpeptidases, including Mycobacterium tuberculosis LdtMt2, which is a non-classical transpeptidase that generates 3->3 transpeptide linkages. LdtMt2 is associated with virulence and resistance to amoxicillin. This domain may occur in a tandem-repeat arrangement and is found N-terminal to the catalytic L,D-transpeptidase domain; this model represents the first (N-terminal) repeat in LdtMt2 and related proteins.	8.17656e-28
NZ_AP022618.1\|WP_083033106.1\|827982_830910_-\|MMPL-family-transporter	gnl\|CDD\|225272	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only].	8.21139e-131
NZ_AP022618.1\|WP_083033107.1\|831508_831904_-\|DUF3054-domain-containing-protein	gnl\|CDD\|378616	pfam11255, DUF3054, Protein of unknown function (DUF3054). Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.	6.56245e-23
NZ_AP022618.1\|WP_163787762.1\|814393_816631_+\|ATP-binding-protein	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	2.06946e-14

>NZ_AP022618.1|WP_083033093.1|820458_821115_+|DUF305-domain-containing-protein
MRNAPRPLATRITALAGGAALAVALSACGGSAKEPAAGHDGHEHDHSATSVTSSTTAASPFNSADVNFVTMMIPHHAQAIELAGLVDGRSANAELITLAGNVKNAQQPEIDTMKSMLRSWGYADDQADGNGHGGHGTGMAGMVDDATMAKLKTLSGTDFDTLWLQSMIGHHEGAIEMARAEIGETGGGINPPAKQLAQSIITTQQAEIDQMKGMLGHG
>NZ_AP022618.1|WP_083033092.1|818679_820395_-|dihydroxy-acid-dehydratase
MPEQPAQPAAPDMKPRSRDVTDGLEKAAARGMLRAVGMGDEDFAKPQIGVASSWNEITPCNLSLDRLAKAVKEGVFEAGGFPMEFGTISVSDGISMGHEGMHFSLVSREIIADSVETVMQAERLDGSVLLAGCDKSLPGMLMAAARLDLAAVFLYAGSILPGRAKLSDGTEKDVTIIDAFEAVGACARGLMSREDVDTIERAICPGEGACGGMYTANTMASAAEALGMSLPGSAAPPATDRRRDGFARKSGIAVVELLRRGITARDILVKEAFENAIAVVMAFGGSTNAVLHLLAIAYEAGVPLTLADFTRVGAKVPHLADVKPFGAYVMNDVDRIGGVPVVMKALLDAGLLHGDVMTVTGETMAENLRHIAPPDPDGKVLRALNKPIHPTGGITILHGTLAPEGAVVKSAGFDSDVFEGTARVFERERAALDALENGTITAGDVVVIRYEGPKGGPGMREMLAITGAIKGAGLGKDVLLMTDGRFSGGTTGLCVGHVAPEAVDGGPIAFVRDGDRIRLDVSKGTLDVLVDADEFEARKADFEPLPPTYTTGVLAKYTKLVGSAAVGAVCT
>NZ_AP022618.1|WP_083033090.1|818113_818683_+|hypothetical-protein
MEGLGLVLLIFVGLFVIVWVLETVLDGVVSGLIALIAAPFKAYKKKEQENKLDTYVNGVYFETAVPPAQLYDALSAHLREGDFHPTNLVIVQHEEMGRHNVGFAWKPEVKFHVEGGDELQGSGEPVVEAEVSYDVSGPRTVGRMRLTRFSRDRDWTDEALMENALPWCFEPIHKLDPNAKLTRTPPPPL
>NZ_AP022618.1|WP_083033088.1|817441_817894_-|hypothetical-protein
MRSLTFVAAGIATAALAGCSGQADHSSTGSASTVTRSAGSPAAAPATTSAVQGTTGSLVGSWTSSDGEDKMFGSNGACQNFFYDSSTGKALDIGGPSSCQLSSSQDSSGRYTLKVVQGGNRGTYLVEFHGDDAATVYTKSGTELYRLTRF
>NZ_AP022618.1|WP_083033087.1|816812_817382_-|TIGR00645-family-protein
MSASDSAVTEPPYRSFTGFIGTSIFVSRWLQAPLYLGLIVAQAVYVVVFWKELVHLVKDFNHLDEASVMLIVLGLVDVVMIANLLIMVIIGGYETFVSRIRMDSHPDKPEWLSHVNPNVLKVKLAMSIIGISSIHLLKSFINAQNIPPETLKWQTIIHMAFIASALGLAYVDWISARVATINHGTPEDD
>NZ_AP022618.1|WP_163787762.1|814393_816631_+|ATP-binding-protein
MGWGEREPGTGESASLRQLNRRAATVGLLMRNCVGLMVTGVALADPASQASPGGELLLGAVALWSAYRLATRSHRWQPAVVDYLLVVMLSLGLPLLVSGAGFYRYNTAPLAVAGTGVISFAVSVGPAVSLALTVGIAISYACGAAGVVGWEHVAGVSTLYYFGLQWATSAAIRLMVQRVAAAVDRARAARQAAELEREIDDAVRAYEQEQLSLLHDTAASTLMMVGQDSELDPARLAGQARRDLDLLSGTTWTDTSGPVELVAALRHCAQHRITPVRFAGRVELLLDGRTAGPLTAAVAEVLNNVDRHARAASAVITVSDRAVTVADDGVGFDPARVRRGRGVDTSITARMRAAGGAATIVSALGAGTEVTLTWRGWPDEPPAAGPPPAEPPDAVRLIARVRRTFGLALTVYALANLAFAATAGGSGGFDAVLVGISAAATLCALPGILRDDWRLRGPALVVLAAVAVVQPLLLDPAQIGDSTHWTQASIGWCVVPLVLTRSTPVAVGTVVSYWVLGGAVAFLVDPSAAVLVNLGLGTASILGVQFFALVFNGMVREAAVVADAECESHQRLVAGEELARALRAEHQRRFGRLLDNVMALLGELATGEPLTDDLRSRSRAESRRLRALFDQAATFEQPLMRELRTLVDDAEDRGVEVTVDLGGDLDELDAAEVPALVDPIRVIVADARTFVRLVVTGLSGEVSVSAVCDRSAGPETFERSAGAEYVCTDDTVWVAVGRRTAAAVG
>NZ_AP022618.1|WP_083033008.1|813656_814334_-|response-regulator-transcription-factor
MTASQPERLRPVTVTVIDDHDVVHAGIEAWCAQADPPIEVVGCYESPTAYQARPADAPNADVVLLDLQFIGSRPEFAALEKLVDAGQPVIVYSHMLSDEVILTCLDLGAVTYLTKNEGRNHLVAAVHAAHSSHPYVGPRMAKALLADETFGRTGLTEREKEVLTAWFQTENKELVAKRLFISPATVRTHLQRARAKYAAVGRPASTKSALLARAIEDGLLSAADI
>NZ_AP022618.1|WP_110810940.1|813407_813638_-|hypothetical-protein
MTSGRALTAAGTRVSEPAAAPEIPDSARSGSPGIQGRSGSPGDSGIPARSGSRGHSGDPGPAGTPARCWSAWRSGI
>NZ_AP022618.1|WP_083033011.1|812631_813177_+|hypothetical-protein
MEGIVFVIGFFAVLIGISWGYYALKSVAKRKLFFKGQYERQRTMIDNDLVLTTVVPMPVVMDSLSRHIPDDRSAKAAFLGGAMRVNMDGPNRLVYTHLPKFTTGGGGDRFAASITFEQSGPQQLQAVVSIDEWRENDGVTRRAGIDAMERFRNEVVAAFRAVDPNTAIGGRGQQLAQPGSM
>NZ_AP022618.1|WP_133052993.1|812208_812628_+|hypothetical-protein
MGVTFAPNGIYVGIGLGVVAGLASENLVVGIVVAIVGSVAAWWAIVGIEHLIGRGVEAGATAIGNAYQSRKSRQAPQPPPSPYPGAYGSQPGAYGNQAGWPGQQPAAGYLSPAPPPPGPAAAPGYDNAPAPQWPTYGRG
>NZ_AP022618.1|WP_083033096.1|821730_822768_+|L,D-transpeptidase
MRTHSGRSLAGLFGAAVIVASSVFAVAPAYADPDPVDPGVVDAPGVPAPADNPAPVNPAPANPAPAAAPADNPAVPPATPAVPNNYGAPAVIPAGTPAGQNPTPFVGEAPFRPPTFNPVNGSMVGVAKPIYITFAVPIANRKLAEDAVHITSNPPVPGRFYWVSDTQLRWRPQDFWPANTVVNIDAGGTKSSFRTGDYLVATVNDKTKTMEVMRNGKLEKTFPVSMGRPDGKHETKNGTYYVLEKFADMTMDSSTYGVPVNSPEGYKLKVQDAVRIDNSGVFVHSAPWSVAQQGSSNVSHGCINLSPANAKWFYDNFGSGDPVVIKGTGGGWYNQPDGASDWQMF
>NZ_AP022618.1|WP_083033098.1|822849_823911_-|hypothetical-protein
MLGWRIGVGVLAVSAVAACAAPAPEKPTTPEHASCMASLPDGWRTAFDDGARTVAPAEVPLAVGPAGDVVVARDDGTVRDAALIGADGAATTVYTVADPANRDVGFAALDDKWIVVGVRHNPRGANGVLPTLVRVEVINRADHSVRTVAETSADDLRDGGATIDSVALSGDTVYWLTRDSFAGAHGTVRSFDANSGATAEVTSGSLSSLRTGAAGVLWDVADDPAVVGVPAELPAAVADAVGEQRAGVVTDGKAYAWRSDGGLTWWSADAGTVRVTGDLPGASELWVSGPLVFGSHAPTATVVDTRSGASVELPYQVAAVGGGTLAALKAPADKSAPLTPVIVRTEPLPPLTC
>NZ_AP022618.1|WP_083033099.1|824041_826072_-|M13-family-metallopeptidase
MTVETHPSGLDLRYVDEHARPQDDLFGHVNGRWLADYEIPADRATDGAFRTLYDRAEEQVRELILSAADSTSSVVLRGRGRPPSDPAEDASGGDEQRIGDLYASFLDAETVEAIGLAPLLAELGRIDDAGDPDALAGLLGELARTGVGGGVGLYVDTDAKNSERYLLHLSQSGLGLPDESYYRDPAHAEVLAAYPRHIARMLELVYGPGDHQQTATRIVALETKLAAAHWDVVRRRDADLSYNLRVFTELPEQAPGFDWAGWLRALGGSPEIAAELVVRQPSYLSAFAALWADEPLADWQDWARWRVIHSRAGFLTEALVTEDFAFYGHTLSGTEAIRDRWKRGVSLVETLMGDAVGKLYVAKHFPPGHKARMDELVHNLREAYRVSISDLEWMTPETRQRALVKLDKFTAKIGYPARWRDYSAFVVDRGDLYGNYRRGYAVGYDHELAKLGGPVDRDEWFMTPQTVNAYYNPGMNEIVFPAAILQPPFFDADADDAANYGGIGAVIGHEIGHGFDDQGAKYDGDGNLVDWWTDDDRAEFGVRTTALIEQYDAYAPKALGPDHHVNGAFTVGENIGDLGGLSIALLAYRLSLGGAEPPVIDGLTGVQRVFYGWAQVWRTKSRDAEAIRRLATDPHSPPEFRCNGVIRNIDEFYDAFGVTSDDELFLAAEDRVRIWS
>NZ_AP022618.1|WP_083033101.1|826119_826737_+|hypothetical-protein
MPTQDTDGDPADDTAADAATADGDRADGPVFSRYGIVSALLALITVAAIAAGGVIWSTHRHAEDTRAHQSDVLQAAAAWTTVLINMNADNVEASMAQLRDGTVGELNSGFDRNMAPYRELMQKLKTRTSGQIDAVALETVHNAPAQNRGETLVDDAATSNDTVLVAARSVSDSAAGKGNTIGWLLRLGVVDVDGTLMISSLETLR
>NZ_AP022618.1|WP_083033102.1|826733_827429_+|hypothetical-protein
MRNIARLVAFDVLAPLVTVAALAAIGIVLMWPKWWVAVFAALCVLIAQAAALNFFLLRRDGVTVGTDDDGPGLRLAVTALMAVVVIAAATVGYTQWTRPDRTFDADRSQAVQVATQVAEATATFSPSDPLAGIEKAAAMMTADTAKSFRTSYAGTTAELAKNKVSQQGQVESAGIQALVPNAATVLVVLRLTQSTPGKAATQGAAGLLMSMTKDDGRWLVADIAPLQRGAA
>NZ_AP022618.1|WP_110810946.1|827485_828046_-|XRE-family-transcriptional-regulator
MGSGQDPLPVGCGCDAGGDEVTVAASDADAAGPVSDGGRPVEFWSTAAIRAALEDGDISVWQRIVVAIKRDPFGRTSRQVEEILETRADAGEPHGIAKAMREVLNRSRTHLETAERAEVARHVRVLLDRSGLSQREFASRIGTQSTVFADYLTGAVCPPASLMIRMRRLSDRFARMRAQRETPTED
>NZ_AP022618.1|WP_083033106.1|827982_830910_-|MMPL-family-transporter
MMRLSATLRRFRWLVFASWLVALVPAVSLLLTGSNQLTGGGFEVAGSQSLRVQYAIEDHFPTEGASPLALVAAPQATATYADMTGAVDKLERIAAEVPSVTVVPIPSQRPPQPDRPYVVQLRVDFNNTGAVDVAKKLREKVGVNGADPGETANESVRLYVIGQGALGAAAATSTKHDIAAAEKWNLPIVLIVLIAVFGSLAAAAVPMILGLCTVLVTMGIVYLLSQFTTMSVFVSSTVSMFGIALAVDYSLFILMRYREELRQGRTVAQATDAAMATSGLAVVLSGMTVIASLTGIYLINTPVLSSMATGAILAVVVSVLTSVSMTPAILTTFGRTAARRSPLLQLSRSKPDHEPFWSVWVRRVMRRPWLSALLATVLLLILAAPAFSMVLGNSLLRQFPPGHEIRGGVSAAAKALGPGALGPVRVLVTFPDGDASNPQNAAITDAIAGEMHRAINIADVNPPPVYSDDDHSVLVSGVLTVDPEDLAARHTVDWLREQLPKTAGEAASAAGTSAPVVSVGGPTALMKDFDDRVDHTGPRVLLFVSVVAFLMLLLSIRSVFLAFKGIVMTVLSVAAAYGSLVVVFQWGWLRGLGFEPLTSIDSTVPPLVLALTFGLSMDYEIFLLTRIRERFLQTADTRDAVSYGVSTSARTITSAALIMIAVFVGFAFAGMPLVAELGVACAVAIAVDATVVRLVLVPALMVVFEQWNWWLPRWLDRILPSVDFEKPVPVAECAEGVSFADDLPGLPAPNADVRMVVKGAAKLQRLAPDAVTVPDPMAFAGCAGLDGRIRGGDGAELDDTARLRTVQTEQFARLVHPVTVWRRRLGVALEALHDETDRLEPKLVRNSPVETTNVQLPTGDRLRIPTGAETLRLMSYLLMTRNSSQDFADFVELIDTCDAETAAAVLTEIDTYYCGRWSDCQPADRPWVSTHLVRQLADPQPSDTDEDAAPGDDRKWDRVKTRCLSVAVAMLEETR
>NZ_AP022618.1|WP_110810947.1|831139_831499_+|heme-binding-protein
MMRKSLQSAAVAAIGSGAVFGALLASAPSAIADPPPNCTAADFAGVASGVSAASSAYLFTHPDVNDFFTGLHGKPRAEIKTAVADYFKANPQVKDEMTGIRQPLVDIKNRCGFTGVPPS
>NZ_AP022618.1|WP_083033107.1|831508_831904_-|DUF3054-domain-containing-protein
MSDAPTPNTDRRGAVAAATGLDLAAVLLFAATGRNSHDEGITLAGVATTAWPFLVGTALGWLLARAWRRPAALMPTGVVIWISTVVVGMALRLVSGQSTELKPSFLVVASVSTAVLLLGWRAGALALNRRR
>NZ_AP022618.1|WP_083033109.1|831937_833014_-|UPF0104-family-protein
MAHSPGASSRGKYWWLRWVILGAVLVVLAVEATLVRDQLSQAWHSLVDANPAWVLAAVVAAMCSMHSFAQIQRELLRSAGVRVRQWRSEAAFYAGNALSTTLPGGPVLSATFVYRQQRMWGASPLVASWQLVMSGALQVVGLAVLGLAGAVMLGAKNNPFSLLFTVGGFILLLLFAQAVASRPELLDGIGVKVLAWFNQLRGKPADTWVDRWREILRQLEAVKLGRRQLGVAFGWSMFNWIADVTCLLFAAYAAGGHPSLGGVIVAYAAARAVGAIPLMPGGLLVVEAVLVPGLVSSGMTLPDAISAMLIYRLVSWIFISSIGWVVFFFMFRTDNHASPEPDARRSAALGDPDRSHLD

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Crispr_ID: NZ_AP022618_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022618_4

1023770-1023866

Orphan

Consensus_repeat	Method
TTCCTCGCAAGCTCGTCGAATCAGAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP022618_4

>merge|NZ_AP022618|4|1023770-1023866|CRISPRCasFinder
TTCCTCGCAAGCTCGTCGAATCAGACGGGACTGATGCGGTCTGATCGCTTCCTCGCTTCCTCGCTTCCTCGTTCCTCGCAAGCTCGTCGAATCAGAC

>NZ_AP022618|4|4|1023770-1023866|CRISPRCasFinder
TTCCTCGCAAGCTCGTCGAATCAGAC	GGGACTGATGCGGTCTGATCGCTTCCTCGCTTCCTCGCTTCCTCG
TTCCTCGCAAGCTCGTCGAATCAGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022618.1\|WP_083030101.1\|1020479_1021661_+\|molecular-chaperone-DnaJ	unknown	unknown	gnl\|CDD\|237655
NZ_AP022618.1\|WP_083030102.1\|1019820_1020432_+\|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl\|CDD\|237623
NZ_AP022618.1\|WP_083030095.1\|1028749_1029820_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372784
NZ_AP022618.1\|WP_083030106.1\|1013768_1014947_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|366166
NZ_AP022618.1\|WP_133052902.1\|1034598_1035408_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022618.1\|WP_110810783.1\|1025338_1027240_-\|protein-kinase	unknown	unknown	gnl\|CDD\|271322
NZ_AP022618.1\|WP_083030105.1\|1016571_1016940_+\|DUF488-family-protein	unknown	unknown	gnl\|CDD\|225730
NZ_AP022618.1\|WP_083030091.1\|1033062_1034424_-\|PQQ-binding-like-beta-propeller-repeat-protein	unknown	unknown	gnl\|CDD\|271322
NZ_AP022618.1\|WP_083030103.1\|1017973_1019824_+\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
NZ_AP022618.1\|WP_083030089.1\|1035515_1036199_+\|GAP-family-protein	unknown	unknown	gnl\|CDD\|378566
NZ_AP022618.1\|WP_083030120.1\|1015582_1016518_-\|LLM-class-F420-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274648
NZ_AP022618.1\|WP_083030093.1\|1030982_1031984_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378959
NZ_AP022618.1\|WP_165756825.1\|1017099_1017648_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
NZ_AP022618.1\|WP_083030121.1\|1015000_1015564_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379883
NZ_AP022618.1\|WP_083030100.1\|1021667_1022036_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133387
NZ_AP022618.1\|WP_083030096.1\|1027975_1028644_-\|GAP-family-protein	unknown	unknown	gnl\|CDD\|378566
NZ_AP022618.1\|WP_083030099.1\|1022077_1023718_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
NZ_AP022618.1\|WP_083030092.1\|1032092_1033052_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022618.1\|WP_083030119.1\|1027285_1027954_-\|GAP-family-protein	unknown	unknown	gnl\|CDD\|378566
NZ_AP022618.1\|WP_083030094.1\|1029898_1030900_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372950

Protein	Function_ID	Function_description	E-value
NZ_AP022618.1\|WP_083030101.1\|1020479_1021661_+\|molecular-chaperone-DnaJ	gnl\|CDD\|237655	PRK14279, PRK14279, molecular chaperone DnaJ.	0
NZ_AP022618.1\|WP_083030102.1\|1019820_1020432_+\|nucleotide-exchange-factor-GrpE	gnl\|CDD\|237623	PRK14142, PRK14142, heat shock protein GrpE; Provisional.	6.26545e-75
NZ_AP022618.1\|WP_083030095.1\|1028749_1029820_-\|hypothetical-protein	gnl\|CDD\|372784	pfam13886, DUF4203, Domain of unknown function (DUF4203). This is the N-terminal region of 7tm proteins. The function is not known.	0.00161672
NZ_AP022618.1\|WP_083030106.1\|1013768_1014947_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|366166	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	1.89392e-11
NZ_AP022618.1\|WP_110810783.1\|1025338_1027240_-\|protein-kinase	gnl\|CDD\|271322	cd14952, NHL_PKND_like, NHL repeat domain of the protein kinase PknD. PknD is a mycobacterial transmembrane protein with a cytosolic kinase domain and an extracellular sensor domain that contains NHL repeats. It plays a key role in the development of central nervous system tuberculosis, by mediating the invasion of host brain endothelia. The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.	4.19239e-74
NZ_AP022618.1\|WP_083030105.1\|1016571_1016940_+\|DUF488-family-protein	gnl\|CDD\|225730	COG3189, COG3189, Uncharacterized conserved protein [Function unknown].	1.1264e-46
NZ_AP022618.1\|WP_083030091.1\|1033062_1034424_-\|PQQ-binding-like-beta-propeller-repeat-protein	gnl\|CDD\|271322	cd14952, NHL_PKND_like, NHL repeat domain of the protein kinase PknD. PknD is a mycobacterial transmembrane protein with a cytosolic kinase domain and an extracellular sensor domain that contains NHL repeats. It plays a key role in the development of central nervous system tuberculosis, by mediating the invasion of host brain endothelia. The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.	5.16964e-55
NZ_AP022618.1\|WP_083030103.1\|1017973_1019824_+\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
NZ_AP022618.1\|WP_083030089.1\|1035515_1036199_+\|GAP-family-protein	gnl\|CDD\|378566	pfam11139, SfLAP, Sap, sulfolipid-1-addressing protein. SAP is a transmembrane transport protein with six predicted transmembrane helices, with a hydrophilic domain between helices 3 and 4. This hyrodphobic region is highly variable among identified Gap-like (GPL, peptidoglycolipid, addressing protein) proteins and may be involved in substrate recognition. SAP also belongs to the LysE protein superfamily (pfam01810), whose members have been implicated in small molecule transport in bacteria. Other Gap proteins export metabolites across the cell membrane so it is possible that Sap specifically may be involved in transport of sulfolipid-1 across the membrane.	1.90163e-07
NZ_AP022618.1\|WP_083030120.1\|1015582_1016518_-\|LLM-class-F420-dependent-oxidoreductase	gnl\|CDD\|274648	TIGR03560, F420_Rv1855c, probable F420-dependent oxidoreductase, Rv1855c family. Coenzyme F420 has a limited phylogenetic distribution, including methanogenic archaea, Mycobacterium tuberculosis and related species, Colwellia psychrerythraea 34H, Rhodopseudomonas palustris HaA2, and others. Partial phylogenetic profiling identifies protein subfamilies, within the larger family called luciferase-like monooxygenanases (pfam00296), that appear only in F420-positive genomes and are likely to be F420-dependent. This model describes one such subfamily, exemplified by Rv1855c from Mycobacterium tuberculosis. [Unknown function, Enzymes of unknown specificity].	7.6582e-109
NZ_AP022618.1\|WP_083030093.1\|1030982_1031984_-\|hypothetical-protein	gnl\|CDD\|378959	pfam12811, BaxI_1, Bax inhibitor 1 like. The Bax-inhibitor-1 region of the receptor molecules is conserved from bacteria to humans.	0.00290314
NZ_AP022618.1\|WP_165756825.1\|1017099_1017648_-\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	0.00156777
NZ_AP022618.1\|WP_083030121.1\|1015000_1015564_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|379883	pfam16859, TetR_C_11, Bacterial transcriptional repressor C-terminal. This family of bacterial transcriptional repressors is characterized by the short approximately 50 amino acid stretch of residues constituting the helix-turn-helix DNA binding motif, around the YRFhY motif. The target proteins that are repressed are involved in the transcriptional control of multi-drug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. Another target protein is BetI, an osmoprotectant which controls the choline-glycine betaine pathway in E.coli.	1.91251e-19
NZ_AP022618.1\|WP_083030100.1\|1021667_1022036_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|133387	cd01279, HTH_HspR-like, Helix-Turn-Helix DNA binding domain of HspR-like transcription regulators. Helix-turn-helix (HTH) transcription regulator HspR and related proteins, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.	7.02759e-39
NZ_AP022618.1\|WP_083030096.1\|1027975_1028644_-\|GAP-family-protein	gnl\|CDD\|378566	pfam11139, SfLAP, Sap, sulfolipid-1-addressing protein. SAP is a transmembrane transport protein with six predicted transmembrane helices, with a hydrophilic domain between helices 3 and 4. This hyrodphobic region is highly variable among identified Gap-like (GPL, peptidoglycolipid, addressing protein) proteins and may be involved in substrate recognition. SAP also belongs to the LysE protein superfamily (pfam01810), whose members have been implicated in small molecule transport in bacteria. Other Gap proteins export metabolites across the cell membrane so it is possible that Sap specifically may be involved in transport of sulfolipid-1 across the membrane.	5.05001e-33
NZ_AP022618.1\|WP_083030099.1\|1022077_1023718_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	6.53669e-145
NZ_AP022618.1\|WP_083030119.1\|1027285_1027954_-\|GAP-family-protein	gnl\|CDD\|378566	pfam11139, SfLAP, Sap, sulfolipid-1-addressing protein. SAP is a transmembrane transport protein with six predicted transmembrane helices, with a hydrophilic domain between helices 3 and 4. This hyrodphobic region is highly variable among identified Gap-like (GPL, peptidoglycolipid, addressing protein) proteins and may be involved in substrate recognition. SAP also belongs to the LysE protein superfamily (pfam01810), whose members have been implicated in small molecule transport in bacteria. Other Gap proteins export metabolites across the cell membrane so it is possible that Sap specifically may be involved in transport of sulfolipid-1 across the membrane.	2.41205e-30
NZ_AP022618.1\|WP_083030094.1\|1029898_1030900_-\|hypothetical-protein	gnl\|CDD\|372950	pfam14179, YppG, YppG-like protein. The YppG-like protein family includes the B. subtilis YppG protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 115 and 181 amino acids in length. There are two completely conserved residues (F and G) that may be functionally important.	0.00273086

>NZ_AP022618.1|WP_083030099.1|1022077_1023718_+|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MTATLVARDVAGGFAHRTLFEDVDLTVAPGDVIGVVGANGAGKSTLLRILAGDLAPLAGSVGRAPTDAFVGWLPQEHERVVGETVAGYLARRTGCAAATRAMDAAAEALDDDRGADEYAVALEHWLASGAADLDERIPAVLADLGLTDALQPESTPMTALSGGQAARVGLAALLLSRFDVVLLDEPTNDLDLDGLSRLERFVGDLRAGVVLVSHDREFLARTVTRVLELDLAQHTTTVYGGGYESYLAEREVARRHRRQEYEEFATKKADLVARARTQREWSSQGVRNAMRKSPDNDKIRRRAQSESSEKQAQKVRQMESRIARLTEVEEPRKEWQLQFTIGAAPRSSSVVATLNDAVVRRGDFTLGPVSLQVDAGERIGITGPNGSGKSTLLRLLLGQWAPDEGRAALGANVAIGEIDQARAGFTGPERLVDRFEAAVPGFSTVEVRTLLAKFGLGADHAERSVDELSPGERTRAGMALLQAVGTNVLVLDEPTNHLDLPAIEQLEAALDSYDGALLLVTHDRRMLENVRLDRRWLVRDGQVSEL
>NZ_AP022618.1|WP_083030100.1|1021667_1022036_+|helix-turn-helix-transcriptional-regulator
MNEAVGSEGSTFLISVAAELAGMHVQTLRTYDRLGLVTPQRSSGGGRRYSERDVELLREVQRLSQEEGVNLAGIKRIIELTNKVAALQARVRELGEEADAARSGRRPGTAVVVWQPRGRRPQ
>NZ_AP022618.1|WP_083030101.1|1020479_1021661_+|molecular-chaperone-DnaJ
MAQREWVEKDFYSELGVSSDATQDEIKKAARKILAENHPDRNPGNAAAEEKYKAASEAKDVLSDPAKRKEYDETRRMFAGGGFGNRFRGGGGGGFNGYGSDGAEFNLGDLFDAAGETGGANIGDLFGGLFGRGAQPRPSRPRRGKDLETETELDFMEATKGVAVPLRLTSPAPCTNCHGSGARPGTSPRVCASCNGSGVVNRNQGAFGFSEPCSECRGSGSIIEHPCDECRGSGVATRTRTINVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFSRDGDDLTLTIPVGFTELALGTTLSVPTLDGKVGVRVPKGTADGRILRVRGRGVPKRSGGAGDLLVTVKVAVPPKLEGEALEALEAYAAAERASGFDPRAGWAGNRM
>NZ_AP022618.1|WP_083030102.1|1019820_1020432_+|nucleotide-exchange-factor-GrpE
MSENDSHEPVTVTDKRRIDPETGEVREHTSGPAPSGPAPEVPTISEESQNEAAELIADLQRVQADFANYRKRSLRDQQFAVDRAKASVVAQLLPVFDDLDRARAHGDLESGPLKAVADKLAATLESLGLAAFGDEGDAFDPEIHEAVQHEGDGSNPVLGTVMRKGYRLGDQVLRHAMVAVVDAVENIAGDDDTGQRPDAPANS
>NZ_AP022618.1|WP_083030103.1|1017973_1019824_+|molecular-chaperone-DnaK
MARAVGIDLGTTNSCVAVLEGGDPVVVTNSEGSRTTPSVVAFARNGEVLVGQPAKNQAVTNVDRTIRSVKRHMGTDWTVEIDGKNYTAQEISARTLMKLKRDAESYLGEDITDAVITVPAYFNDAQRQATKEAGQIAGLNVLRIVNEPTAAALAYGLDKGSKEQTILVFDLGGGTFDVSLLEIGDGVVEVRATSGDNHLGGDDWDDRIVDWLVEKFKSTSGIDLTKDKMAMQRLREAAEKAKIELSSSQSTSINLPYITVDADKNPLFLDEQLTRAEFQRITQDLLDRTRKPFQQVVKDAGIAVGDIDHVVLVGGSTRMPAVTELVKELTGGKEPNKGVNPDEVVAVGAALQAGVLKGEVKDVLLLDVTPLSLGIETKGGVMTKLIERNTTIPTKRSETFTTADDNQPSVQIQVFQGEREIAAHNKLLGSFELTGIPPAPRGVPQIEVTFDIDANGIVHVTAKDKGTGKENTIKIQEGSGLSKEEIDRMIKDAEAHAEEDKQRREEADVRNQAESLVYQTEKFVGEQRSAEGGSKVPEDTLTKVEAAIADAKTALAGTDIAAIKSAMEKLGEQGQALGQAIYEAAQAEQAAGGADSGSGADDVVDAEVVEDDQENK
>NZ_AP022618.1|WP_165756825.1|1017099_1017648_-|hypothetical-protein
MAVAGAAIAAAALAGCNTVVDGTATCPGCGTGTEPTIPTSRPEVHPPTTPAPSPSAAPPPTATAGPKPGATTLPANESGLVFIETKSGKTRCQLTTASVACESDFANAPMKDGFKANGVSVNGSGTLTWVVGNLGDIPVVKLDYQTYSANGWTIDATSDGTRFTNDTTGHGMQVATQGVQAF
>NZ_AP022618.1|WP_083030105.1|1016571_1016940_+|DUF488-family-protein
MGKVAPKVRIKRIYDDPAPDDGARVLVDRLWPRGISKERAELEEWCKQVAPSTELRKWYSHDPAKFAEFGKRYRAELTDPEHAEALAHLRELARGPQGLTLLTASRALDISEAAVLAELLNK
>NZ_AP022618.1|WP_083030120.1|1015582_1016518_-|LLM-class-F420-dependent-oxidoreductase
MAIVDFRVFVEPQQGASYADQLAVAQAAEALGYSAFFRSDHYVAMSGDGLPGPTDSWVTLGALARETSRIRLGTMVTSATFRHPGPLAISVAQVDDMSDGRVDFGIGAGWFAKEHEAYAIPFPPLGERFDRLEEQLEILTGLWSATGTFSHAGRHYTVTDSPALPKPAQRPHPPIIIGGLGPTRTPRLAARFADEFNVPFCTVEVIAAQFDRVAGAVAAAGRAADSMTYSACFVVAAGRDDAEVTRRADAIGRELDELRTNTPLVGTPNEIVDRLTPFAEAGVARVYLQVLDLADLDHLEVFADGVIRQLR
>NZ_AP022618.1|WP_083030121.1|1015000_1015564_+|TetR/AcrR-family-transcriptional-regulator
MRRLGRRGEALRRAVLDAAIDEIVAGGADAATVLNISRRAGVHETSVYRRWQTRENLILEALLERSGLDIPAPDTGSLRGDLVAIARSVSVFIQSPVGQALQRAGARSAPVDDEGLRAFWRARRVALESVIDRAKARGELEQDADGSLLVEALVAPLHFRILLSREPIEADLPERLADLVLRGAQRG
>NZ_AP022618.1|WP_083030106.1|1013768_1014947_-|alpha/beta-fold-hydrolase
MTPSDNPQARALDWRADAPVIGYHAFHPDTSLNFQCNRWVQWIGPEAIPGVAALAARADGYPEWIDGFLALSEQARDQQRTLAAAYFLRAAEFFMAPTDPRRPGFRARFLTDMRGLYQVQPTDVAYQGGALPAYDLGPAGTPDDTVLIFGGFDSYVEEFLPMITGLAAAGYRVIAFDGPGQGGALEDHGLPMTPEWERPVAAVLDHFGIDHGVTAIGVSLGGGLVVRAAAFEPRLKRVIAFDILDDELEVVARQIGRGAAVGVRVLLALRARALVNAAARVAAAHKPVSAWGLQQGMHITGTASAYDFLTAARGTSTRDISDRVTGDVLLLAGADDHYVPLHQLSRQAENLVGARSVTTRVFTADEDAGNHCQIGNLGLAVRFGLAWLDRLR
>NZ_AP022618.1|WP_110810783.1|1025338_1027240_-|protein-kinase
MTTGGPVAETALGRYRLVEQLDRNESTQVFRGHDTVTDREVTVVRLVDDASRQRFFDGARLLASLDDPHVPAVLDIDDEYFVTRPVAGRSLMADGLLSPQRAVAVLEQVGDAVDAAHAVGLVHGEIRPANITVGKRDFAMLTGFAHGSGPSSVGRFAYLAPERFEAGDATVAGDVYALACVLFECLTGRTPYAGDTLEQQITGHLAKPAPRPSDTGVPAAFDAVIATGLAKDPAVRFGSAGALLDAARAALSGMVAPEPVAPPPPAPAPTEPASAAWLGVDAAKVALARPADVPDAAVPVDQVPPDALVAVEPEPPVTSFDPAAPAAAHHVIEPDDSDAPPVSYGWPTSVDAAALPPSPHPQYATPPAAPPQYAVPAVAGTKVRCAHRTLRVHGLSRPEGVAVDGAGTVFIADWGNDRIIAVATGSAPTTLRVPGLDGPAGVALGDGTLFITDSGNNRVVVRQDRAFRAKALPIALLDNPQGIAADPHGWIYIADWGNDRVLAVTADGRDARTLPFPGLVGPQDVAVDGSGAVYVTDAANNRVLQLSPGASAPVELPLTGLKSPHSIAVDRARTVYVTDRGNNRVVLMTADQTQRTLGLDGLAEPSGIAVDARGVIYIVDDGNDRILQATPLP
>NZ_AP022618.1|WP_083030119.1|1027285_1027954_-|GAP-family-protein
MSASLGSAAVEVLPLALVIALSPISIIPAVLVLQGDRPRESGLAFLAGWVLGIAALTTLFTALPGLLEADSGPPPTWASWVRIVVGAALIVFGIFRWFTRASRPHQLPGLRQLTEARPAKLFGLSALLTVVNVKVLFMCVAAGLVIANSGLGALTPVAAAGFVVVSTSSVALPVLGYIASAGRLDPALLRLNGWLQRHSGALVAITLIVIGILVLHRGIVGL
>NZ_AP022618.1|WP_083030096.1|1027975_1028644_-|GAP-family-protein
MNTNLLSASAEVLPLALVIALSPFTVVLAVLVVQGNRPRASGLAYLAGWLCGITVLIAMFTALPEAMDPDESYTPEWSAWTRILVGGALIAVGIYRWATRGNRSPQLPGVDRLTGTSPVKVFGLRLVLTMVNFKVLFICVAAGLVISNAHLGRWTPVAAATFVVTAASTVAIPILGYLFTGDRFDATLTRMRIRLEKNSPALIAVTLIAIGVLVLQQGVLDA
>NZ_AP022618.1|WP_083030095.1|1028749_1029820_-|hypothetical-protein
MTEPDRLSALSQRVVAVTGRTLTREQLVTLVGQAFEHDLNLDDDGQLRGLVGGLLAADATTATRAGDDEAPPISYAQPQQPYAQPQSSYLQQQPYPVRYPGPMPTPGPMRYPMPPPRPPAPPMRHPAGFIVAGILVAIAAVGIVLTAPAFAVRMARAYHASTPMAGFSVAWLAIGLAFGLIAVAARPAGKGLVGRAVVTALATLPPAVVPWVGLNLTHTHDAQVVFLLLAAAAALTWSIAVIVFGAGARSSFRLFGTITGTGAGITSLGLTLLYGLFAAQMVMGLSRSLVRHLSAPLLGVWLVSMVLLLLLGIAISVGRVPVVATATAAPEPPAVDTESDCAPTDTASDPEPAADP
>NZ_AP022618.1|WP_083030094.1|1029898_1030900_-|hypothetical-protein
MTEPDRLSALSDRIVAVTGRTLTREQLVSLVGRAFEHDLNLDDDGQLRGLVGGMSSDGPADEQVVGPPMSYGQPTAPSYPAPQPGYPQAYPQPSWPGMNPAMAPGYPMMPPPRQPQTTRHPVGFIVGGILIALAALVWGVLTFAGDYFLEDTHLFGYLTPAMLASRVSWLIVAMGFTAIAVGARGATRVFAIIAAASAALAALTGIIFFGFLDYHSIPETSANALLLGPTVTFNIAMLITAITGLRSFGVFGLLTAIADGVLTAVIYISGFTSLYSVNLWASRVEPVVFLLFGIAVSCGKVPVSQATPLVGVEPPSGPVPGTPDGTPAADTAP
>NZ_AP022618.1|WP_083030093.1|1030982_1031984_-|hypothetical-protein
MTEPDRLSALSERITALTGRNLTREELVTVAGRAFEHQIDLDDDGQLRALLGGLTSGGIAGGQVGGPPVSYGQPAAPSYPYPQPGYPQAYPQPGWPGMNPMMAPGYPLIAPPLRAPKAPTRHPAGFIVGGILIALGTPLLVFGGYTYRAGYHHGLSPLLLLSRAGWLLLAVAFVLVAANTRAATRVSAIVAASAAALTIVISIVFQVLLPGLAHGLIALLLTATGLAFAVALLVAGTTGRTYFGAFGLVAGVAYGVFSTLMILSSFFGIGWPTRILSLLDVVSLLLFGIAVSCGKVPVTASPGPMYPSYPDLGPPSAPVRPGTPDGTPAADTP
>NZ_AP022618.1|WP_083030092.1|1032092_1033052_-|hypothetical-protein
MAQPDRLSALSQRVNALTGRTLPRDELVIVVGRAFEHQIDLNDDGQLRALVGGLSSTGLSTEPTGPAAPASTGQQGEPPVSHGQPAHVGYQPGYPQAYPQPGVPARMNPAMVPGHAVMPPPPNRLTRHPAAFIVAGILIVLTTIVSLVHRWAIGYRYGGTYYWHYFGGVGPTSFGVIVVWLLFAVAFALITSNAGATATRTSAAVGTGSALASAAVTLAVGWFIVLPSGLAPLLINGLSVAFAVSVLATGVTGRASFGTFGVVTGAGYSILSVLLSLLPFFGLHAATLILALLSSVFLVLFGIAVSCGRVPVKAVAATP
>NZ_AP022618.1|WP_083030091.1|1033062_1034424_-|PQQ-binding-like-beta-propeller-repeat-protein
MTEPPDPFTEVFEPPVSRFEPPTQQVPPSYQQAPAPGQPWQSGDAFQQAPLPGQTWPSGDAQNGGAWFAPGQPGQPPKRNRNMLRWAIVAAVLAVVSAVGVTIWLVVKPSGPTAEQQAGPAPSIPAGSSPADTPSAGASTPVDASGTTPQPTPSEGAPSEPAGPAPSEPSPGEPAPTEPNPSEPGPSEPTPTPDSPPAVTPVQTRLPLNVTRRALTVDRNGTVYVNNKPGLLVLAPGAAAPSTVPLTGEAASLVRMSTDSAGGVYMTTGDQNGIFKMPAGSTTLQKLPISGGNLYADVAVDSGGTIYVTDFTADDDGKYWIQALAPGATSARRIPFGTTGRPVAIAADSSGGVYVANLNAGQVVKLDPATGKQQTLPFSGIQQANGVGVDASGTVYALDFKNNRVLALPAGSSTQKVLPFQGLSNPYDMAVSPDGTVYVSDDSGVIKLEHPLS
>NZ_AP022618.1|WP_133052902.1|1034598_1035408_+|hypothetical-protein
MLGGALVAVAMLAGCGPGQRDPVATTAATGTTTTTAIASPTATSTQDCGKVYIDYKPPLAEQHIRCTLQPAAGLTLAVSSDPSWSFELQRAGTTVQRFTEITDKIGQSGVAPLLADLDGTGIPSLLVVNGRGGTGGEPMAVWKFNPEETEFVRAGEIFGFRHYYRSTEGLFGLYAHSGAGAGVVTLYRWDGDSLVAVVLLDVQTPDWTVQSTDKRVWLRNKNVMCTLNKDDYPAGSLAAWRAQLTAAGFDPATAAEHFCMQPWVGTLYR
>NZ_AP022618.1|WP_083030089.1|1035515_1036199_+|GAP-family-protein
MTAFLLTLTGLAFLDSLNVLNIGVISAVIYGSRLNRQSVLPGGVSYIAGLLTVTITFGLCVVLGLGLLADLTDFHLTPAVRYWGELVLGVLLIGLAFVPLVAQSTTPGWALGAMRDRPWLLGFLGAAVGLGQAPTAVPYLTALAMIAALHPRPGGWPLMIVGYWIVAMLPCMLILGLSTLKSRRAVRAQRWLVRNVAKYGPIGVRLLFLAVGVALVADALVHRSRWW

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Crispr_ID: NZ_AP022618_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022618_5

1231588-1231716

Orphan

Consensus_repeat	Method
CTGCGCTCGCGCCACCTCCGCCGAGCCTCGCTGAACCGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP022618_5

>merge|NZ_AP022618|5|1231588-1231716|CRISPRCasFinder
CTGCGCTCGCGCCACCTCCGCCGAGCCTCGCTGAACCGCCCAGGCCTATTGCGGCGGTCCCAGCTTCCCCTCGGCTCCGCCGGCACTCGCTGCGCTCGCGCCACCTCCGCCGAGCCTCGCTGAACCGCC

>NZ_AP022618|5|5|1231588-1231716|CRISPRCasFinder
CTGCGCTCGCGCCACCTCCGCCGAGCCTCGCTGAACCGCC	CAGGCCTATTGCGGCGGTCCCAGCTTCCCCTCGGCTCCGCCGGCACTCG
CTGCGCTCGCGCCACCTCCGCCGAGCCTCGCTGAACCGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022618.1\|WP_083033912.1\|1230915_1231203_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022618.1\|WP_083033920.1\|1232976_1233903_-\|1,4-dihydroxy-2-naphthoyl-CoA-synthase	unknown	unknown	gnl\|CDD\|181386
NZ_AP022618.1\|WP_083033841.1\|1224020_1224668_-\|DUF1345-domain-containing-protein	unknown	unknown	gnl\|CDD\|377769
NZ_AP022618.1\|WP_083033910.1\|1229638_1230886_+\|inorganic-phosphate-transporter	unknown	unknown	gnl\|CDD\|376541
NZ_AP022618.1\|WP_083033299.1\|1237267_1238878_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|235731
NZ_AP022618.1\|WP_083033918.1\|1232081_1232954_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235631
NZ_AP022618.1\|WP_083033315.1\|1235933_1236581_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|225136
NZ_AP022618.1\|WP_083033839.1\|1225719_1226460_+\|MspA-family-porin	unknown	unknown	gnl\|CDD\|370360
NZ_AP022618.1\|WP_110810988.1\|1226471_1227182_+\|MspA-family-porin	unknown	unknown	gnl\|CDD\|370360
NZ_AP022618.1\|WP_083033316.1\|1239927_1240719_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_AP022618.1\|WP_083033296.1\|1235399_1235864_-\|nitroreductase-family-deazaflavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|281995
NZ_AP022618.1\|WP_110810963.1\|1236559_1237231_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_AP022618.1\|WP_163787785.1\|1227181_1227823_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236090
NZ_AP022618.1\|WP_163787961.1\|1227819_1229142_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|236108
NZ_AP022618.1\|WP_083033301.1\|1238947_1239922_+\|o-succinylbenzoate-synthase	unknown	unknown	gnl\|CDD\|235084
NZ_AP022618.1\|WP_083033925.1\|1229090_1229405_-\|DUF3349-domain-containing-protein	unknown	unknown	gnl\|CDD\|371747
NZ_AP022618.1\|WP_163787700.1\|1233995_1234838_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237871
NZ_AP022618.1\|WP_083033851.1\|1224698_1225217_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235777
NZ_AP022618.1\|WP_083033914.1\|1231213_1231519_+\|DUF3349-domain-containing-protein	unknown	unknown	gnl\|CDD\|371747
NZ_AP022618.1\|WP_133053003.1\|1234852_1235413_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_AP022618.1\|WP_083033301.1\|1238947_1239922_+\|o-succinylbenzoate-synthase	gnl\|CDD\|235084	PRK02901, PRK02901, O-succinylbenzoate synthase; Provisional.	4.21786e-170
NZ_AP022618.1\|WP_083033920.1\|1232976_1233903_-\|1,4-dihydroxy-2-naphthoyl-CoA-synthase	gnl\|CDD\|181386	PRK08321, PRK08321, 1,4-dihydroxy-2-naphthoyl-CoA synthase.	0
NZ_AP022618.1\|WP_083033841.1\|1224020_1224668_-\|DUF1345-domain-containing-protein	gnl\|CDD\|377769	pfam07077, DUF1345, Protein of unknown function (DUF1345). This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.	2.63465e-51
NZ_AP022618.1\|WP_083033910.1\|1229638_1230886_+\|inorganic-phosphate-transporter	gnl\|CDD\|376541	pfam01384, PHO4, Phosphate transporter family. This family includes PHO-4 from Neurospora crassa which is a is a Na(+)-phosphate symporter. This family also contains the leukaemia virus receptor.	2.36401e-90
NZ_AP022618.1\|WP_083033299.1\|1237267_1238878_-\|AMP-binding-protein	gnl\|CDD\|235731	PRK06188, PRK06188, acyl-CoA synthetase; Validated.	0
NZ_AP022618.1\|WP_083033918.1\|1232081_1232954_-\|SDR-family-oxidoreductase	gnl\|CDD\|235631	PRK05866, PRK05866, SDR family oxidoreductase.	2.37081e-145
NZ_AP022618.1\|WP_083033315.1\|1235933_1236581_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|225136	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism].	2.05786e-24
NZ_AP022618.1\|WP_083033839.1\|1225719_1226460_+\|MspA-family-porin	gnl\|CDD\|370360	pfam09203, MspA, MspA. MspA is a membrane porin produced by Mycobacteria, allowing hydrophilic nutrients to enter the bacterium. The protein forms a tightly interconnected octamer with eightfold rotation symmetry that resembles a goblet and contains a central channel. Each subunit fold contains a beta-sandwich of Ig-like topology and a beta-ribbon arm that forms an oligomeric transmembrane barrel.	2.41505e-52
NZ_AP022618.1\|WP_110810988.1\|1226471_1227182_+\|MspA-family-porin	gnl\|CDD\|370360	pfam09203, MspA, MspA. MspA is a membrane porin produced by Mycobacteria, allowing hydrophilic nutrients to enter the bacterium. The protein forms a tightly interconnected octamer with eightfold rotation symmetry that resembles a goblet and contains a central channel. Each subunit fold contains a beta-sandwich of Ig-like topology and a beta-ribbon arm that forms an oligomeric transmembrane barrel.	1.16896e-47
NZ_AP022618.1\|WP_083033316.1\|1239927_1240719_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	9.19768e-25
NZ_AP022618.1\|WP_083033296.1\|1235399_1235864_-\|nitroreductase-family-deazaflavin-dependent-oxidoreductase	gnl\|CDD\|281995	pfam04075, F420H2_quin_red, F420H(2)-dependent quinone reductase. This family of proteins is found in the genera Mycobacterium and Streptomyces. Member protein Rv3547 has been characterized as a deazaflavin-dependent nitroreductase. Rv1558 is an F420H(2)-dependent quinone reductase involved in oxidative stress protection.	6.44369e-09
NZ_AP022618.1\|WP_110810963.1\|1236559_1237231_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	1.03061e-12
NZ_AP022618.1\|WP_163787785.1\|1227181_1227823_+\|hypothetical-protein	gnl\|CDD\|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	0.00811832
NZ_AP022618.1\|WP_163787961.1\|1227819_1229142_-\|AMP-binding-protein	gnl\|CDD\|236108	PRK07824, PRK07824, o-succinylbenzoate--CoA ligase.	2.69244e-156
NZ_AP022618.1\|WP_083033925.1\|1229090_1229405_-\|DUF3349-domain-containing-protein	gnl\|CDD\|371747	pfam11829, DUF3349, Protein of unknown function (DUF3349). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length.	1.06819e-35
NZ_AP022618.1\|WP_163787700.1\|1233995_1234838_+\|hypothetical-protein	gnl\|CDD\|237871	PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional.	2.97177e-05
NZ_AP022618.1\|WP_083033851.1\|1224698_1225217_-\|hypothetical-protein	gnl\|CDD\|235777	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein.	1.36469e-05
NZ_AP022618.1\|WP_083033914.1\|1231213_1231519_+\|DUF3349-domain-containing-protein	gnl\|CDD\|371747	pfam11829, DUF3349, Protein of unknown function (DUF3349). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length.	5.18005e-38

>NZ_AP022618.1|WP_083033914.1|1231213_1231519_+|DUF3349-domain-containing-protein
MTEHNPLDEVLGWLHQGYPQGVPPKDYFPLLALLKRSLTEDEVVQAAREVLGEAVDQPAVTTGEIRQAIERVTEKEPSVEEVHQVAARLASVGWPLAAPAR
>NZ_AP022618.1|WP_083033912.1|1230915_1231203_+|hypothetical-protein
MAYFESILRVLLVGLVLGAGLPALFAIGLTAFSRGAGDMNADGTSQAANPALKFLGLLLFGFVSFIILIAILWITRSTIMHHFHIDPFFGFGLKK
>NZ_AP022618.1|WP_083033910.1|1229638_1230886_+|inorganic-phosphate-transporter
MSAEMIILVLLIATALAFDFTNGFHDTGNAMATSIATGALKPKVAVLLAGVLNLVGAFLSVEVAVTVTTSVLKVQDGKTGHLVEGIDASMGLTIIFAGLIGGILWNLLTWLFGIPSSSSHALFGGLIGAGLAALGMSGVNWPGVMQKVIIPALAAPLIAGIVAACGTWLVYRLTRTVIKKRREEGFRWGQIATASLVALSHGTNDAQKTMGVIALALITTGHLTGDVKNDGLPIWIITSCALAIGLGTYIGGWRVIRTLGKGLVEIESPQGLAAEASSAAIILSSSAAGMALSTTHVATGSILGSGVGKPGAQVRWAVAGRMAVAWLVTLPAAALVGALSFWLSSAIKDVTNSDLAGDGVIFVLLVALSGYMWWRAQQQKVDHSNVNADWDESTNSVVPAEVRGAAATDATKTAV
>NZ_AP022618.1|WP_083033925.1|1229090_1229405_-|DUF3349-domain-containing-protein
MNDFLNRVVAWLRAGYPDGVPRNDYLPLFALLRRQLTVEEVKFIAEQLASRPGEFDDIDIGSEILAVIDDLPDPVDVERVRERLIARGWPLDEPHNSSVDGNLE
>NZ_AP022618.1|WP_163787961.1|1227819_1229142_-|AMP-binding-protein
MAARRTAQQLGRREPRIAVLRALLPAELTDAALLDRLAGVLAGADDALLPLAGTDEHSRQTAAALRVGEPIDGRIALVVPTSGSTGSPKGAQLSADALLAAAAATHERLGGPGNWLLALPATHIAGLQVLIRALAAGTTPVRIRTPGFDPAALPGAVAALGPGRRYTSLVSNQLATALEDPGAAAALAELDAVLLGGGPAPAALLERAAAIGINVVRTYGMSETAGGCVYDGVPLAGVGLRLDDGRIHLGGPTLASGYRNPPAVSRGSAELAERSRSGNRRIDSAVSRGSAELAERSRSGNRRIDSAPDPFAEPGWFRTDDLGELDATGRLRVLGRVDDAIATGGLKVLPQVVEAALNEDPAVAEAVVFGVPDERLGQRVVAAITLAAGATAPTLAALRHRVAQRLPVTAAPREVHVVTELPRLGVGKPDRRGLARRFSR
>NZ_AP022618.1|WP_163787785.1|1227181_1227823_+|hypothetical-protein
MIRKVLAAGLLTGVALAGAATAAADPDPAAPVVDAQAPAAPDAPAPDAPAAPGLTEHPGTRSGNGLTDAFSHPYELQLGQAPSNAIGYDPSLNNPLSQSDFLNPKRYRVPGAEADNQYALQPGVDGPFARVDGLKGTHAMLHGALGRMPHEQMSQPLPGTAPPPGTNIPVGELGNLDDPEAATVPVYGTAPAPAGSAPRLAQPAPPVEDAPAP
>NZ_AP022618.1|WP_110810988.1|1226471_1227182_+|MspA-family-porin
MKTFATIAATGLLMAVAAAPCAIADPSPDAAPADPAAAVEPVADAGPPPDTGVVASGPDGVAHTPDGRTLTVRAKDETQLPIAPLTTSLSSREWLVGATFTGEGMDSVKGGTLEVGYQIGCGIEMDKVKLNGSIGLGTGNFAYDPTIADPTGRLGTVFTMPIQGQIEVEPRPGTITSVIVDKKSFKGNKTRVTVRDIHIKIDNCVGASTLRSYAVLTSSGTDADDIVAYYGVAKTF
>NZ_AP022618.1|WP_083033839.1|1225719_1226460_+|MspA-family-porin
MMQRIAAVAATVLLVPLVAATPALADPAPDVQPVANSDAPAPEGAVPPPGGPAGPVPSAPPGTLVTPDGWTLNVVGKEESMEPVASLTGAPTSREYIVDGTFTGEVTGKGSTELGGGTLEAGYQIGCGIIQDDIESITTAGITPFISSPIHLFPTPSLDQRGFFPAGIAGAVTQQIKIDLKPGTVNIVPVGKKSFKGTKPRISITGFRIKIDGCAGQSFVRSYATLTSSTDNTDDVITYLGVTKAV
>NZ_AP022618.1|WP_083033851.1|1224698_1225217_-|hypothetical-protein
MAATPVAASAPAESTPAPGPAAPPADAAPALDPAAAPAADAAADSGAVPAVTACKMFSVALNYAAQNYEDFAYNTAGDGNSVDYRDPTVVSSNQTGRTALRQAAGSAMEASNTPGLDPSISSPMRSWSLRATKLVLLMGLHGGGNSLNTTATNMNSDAQDVQWACAAAGTHA
>NZ_AP022618.1|WP_083033841.1|1224020_1224668_-|DUF1345-domain-containing-protein
MTVRLSDGPSIIRLATAVVVGVLAAAVVAATVGWPYAPAGGWMVTAAIYLAWTWLLIGPMDPAEARAHATRHDRDDSTPRMVELIVVLAAIASLAGVGYLLAAQAAGGDIAATAVGIGSVIGSWLTVHTVFTLRYARLYFPDRTIDFNQADIEPTYSDFAYLAFTVGMTYQVADTNLRSSSMRRAVLTQAMVSFVLGVVILGITINLIAGLINLH
>NZ_AP022618.1|WP_083033918.1|1232081_1232954_-|SDR-family-oxidoreductase
MAGKSLRRRLTDTFITAAMRPPLGLPRLGRPDVELRGKKVLLTGASSGIGAAATEKFAAAGAEVIAVARRGDLLDELATRIGAAGGEIRTAVCDVTDMDAVDALVEEVGAVDILVNNAGRSIRRPLAESLERWHDVERTMAVNYYAPMRLMRGFVPGMLERGDGHIINVLTWGVMNEAAPLFGAYNASKSALASVSRVADTEWTARGVHCTGLYYPLVATPMISPTRAYDDLPALSAAEAADWMLTAARTRPIRIAPRMAVTMRAFDVASPSLVTEVLRNQWIQPTPMPE
>NZ_AP022618.1|WP_083033920.1|1232976_1233903_-|1,4-dihydroxy-2-naphthoyl-CoA-synthase
MSNNPFDPTLWEPVANIDSQFADLTDITYHRHVIDGRPQPTVRVAFDRPEVRNAFRPHTVDELYRTLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQYASGETADTVDIARAGRLHILEVQRLIRFMPKPVIALVNGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRAYSGEQMHHMGAVNEVVDHADLETVALEWAQAINGKSPQAQRMLKYAFNLLDDGLVGQQLFAGEATRLAYMTDEAVEGRDAFLQKRDPNFDTFPRYF
>NZ_AP022618.1|WP_163787700.1|1233995_1234838_+|hypothetical-protein
MTDPYQQWGQGMPAGQYPGTPGAPMASGPPPAQAPGWAGYPGQQPPRGSGLDLGRIGAAILAVAGLVVLFGSLASLYSVTVTPSALDVKNNDAPTGAVKVAIGFYDMVPFAPPIVAQAIPVLMLLAALTALPVALGSARATVLPAVCSGAATLLGLVLAISNPLPSVQLSGEMATELSKETGGQTIDKMVDAVVSISPGAGLIVAIIFSLLAWVVGVWLMMRRDPAAAPPAPAAPGYPAPPGYPAAPAYPAPPAAPGYAAPPSAPAAPGMPPGVGGQWSS
>NZ_AP022618.1|WP_133053003.1|1234852_1235413_+|hypothetical-protein
MTRVIGAAAGLIALLGLAATFLPMWTVAIQSSDMIAGGRELRELGIAPMSADVRLKVGFYDWFVSSQPAVAVLPLALAIAAGIGLTALAAGVDRRLWAGAGLTALAALVIVMMTAIQPESRHEVTGRLADEISLDNSYLNQASQVAVTVGPGLIGAGIAALMVAVLAGWQYFAAGWGRPQPGFSPR
>NZ_AP022618.1|WP_083033296.1|1235399_1235864_-|nitroreductase-family-deazaflavin-dependent-oxidoreductase
MAAESIRPPWWLKPMNKVFMGVLRLGIPVGGRSGPVVLTVTGRKSGQPRSTPVTPMTVDGQRYVVGGFPGADWVRNARVNPDATLAQGRHKQQVRMVEMTPAQARPLLRQFPVLVPTGVGFIRNAGLVTEGTPDEFEKLTGTCAVFRLDPATAG
>NZ_AP022618.1|WP_083033315.1|1235933_1236581_+|methyltransferase-domain-containing-protein
MTEPDFTPALGRLAPARFFDAVVALTRERLWRALTAAYAAPRPGEVIVDVGCGTGTLALQLKRVAPAATVIGVDPDPDVLAVARTKVGAPGVHWRAGMGDRLVELLGASSADTVVSSLVLHQCPIPMKEAILAAMYDVLRPGGRLVIADFGLQRTWLMRNLFRIVQLADGKTDTQPNADGVLPELMRAAGFPEVREAEVVPTVNGTISIYVAVKG
>NZ_AP022618.1|WP_110810963.1|1236559_1237231_-|helix-turn-helix-transcriptional-regulator
MRDGYAVYRGPVTDGPIHRHGAFQIAIAIEGEVAMAGPTGIRYRAPTLLVAPMAPHRIEASPDLLTYYVDPQCAFADTLRTRYDSGINPAPELGALREQDIAAVGATASSQLDPRLISALDLLRNRSAAIPDIAAAVDLSPQRLRALARGQLGMPLARWRVWSRLRRAAEAMRDGASVADAAVTAGFSDQAHLSRQMRDMMGLTPAAVAPLLANLGAQPFTAT
>NZ_AP022618.1|WP_083033299.1|1237267_1238878_-|AMP-binding-protein
MPDDLLRHPVHSGHLLIGALKRHRDTPVLHLGDTTLTGGQMADKISQYTQAFEALGAGSGEVSGLLSLNRPEVLMITSAGQTRGYRRLALHPLGSLDDHAYVLADSGATSLIIDPNPAFTERAIGLLGKVPALRQVLTIGPVPPELAATGARVVDLTAEADKYQPRPLEAANLAPDYVNGLSYTGGTTGKPKGVMMTTQATTTMTTIQLAEWEWPEHPKFLMLTPLSHAGAAYFLPTLVKGGEMHVMARFDPGEALRYIEEHRITATFVVPAMLYALMDHPDSRTRDLSSLQTVYYGASAINPVRLAEAISRFGKIFAQNYGQSEAPMAISYLAKDEHDDLRLSSCGRPTLFARCALLDPDGNPVPRGEVGEVCVSGPLLAGGYWKLPEETAKTFSGGWLHTGDMAREDSDGFWFIVDRVKDMIVTGGFNVYPREVEDVVAEHPSVAQVCVVGAPDHKWGETVTAVVVLRPDAGTDEASIAAMSAEIQAAVKERKGSVQVPKQIVVVDALPLTGLGKPDKKAVRARFWEGAGRSIG
>NZ_AP022618.1|WP_083033301.1|1238947_1239922_+|o-succinylbenzoate-synthase
MHLPDLDDLLDRVHVVSLPMRVRFRGVTVREVALIDGPAGWGEFGAFAEYAAPEAAHWLAAGVEAAYRPLPPVRRDRIAINATVPAVPPEQVPAVLARFPGARTAKVKVAEPGQTLADDVARVGAVRAQIPTVRVDANGGWTVEQAVAAAAALTADGPLEYLEQPCATVAELAELRRRTDVPVAADESIRKADDPLRVVRAGAADVAVLKVAPLGGVGPLLRIADQVNVPVVISSALDSAVGIGIGLAAAAALPQLTHACGLGTGRLFVEDVADTPDPVDGFLPVNRAAPDPDRLTALAAPPDRRDWWLDRIRECHGLLDSVAR
>NZ_AP022618.1|WP_083033316.1|1239927_1240719_+|alpha/beta-hydrolase
MAYHDGGTGDPVLFIAGRGGAGRTWHLHQTPEFRRHGYRVITFDNRGIGATANAEAFDINTMVADTAELIDTLVGGPVRIVAVSMGSYIAQELMLARPELVTQAVLMATRGRPDRMREIGAVAERAMIDSGVKLPVEYEARNRMLENFSPKTLCDDRAASDWFDMFTMWPAENTPGVRAQLHVSPETNRLAAYRAITAEVLVIGFSHDVLLPPALSAEVAAAIPRGSYLEIPDTGHLGFIEAPGPVNAAMLEFFGGPGSLKLV

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Crispr_ID: NZ_AP022618_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022618_6

1245561-1245638

Orphan

Consensus_repeat	Method
TCGCGCTCGTCGCCCAGCCGACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP022618_6

>merge|NZ_AP022618|6|1245561-1245638|CRISPRCasFinder
TCGCGCTCGTCGCCCAGCCGACGGTGCTCAATGGCGCGTCTGGTGTCCTCGCGCTTCGCGCTCGTCGCCCAGCCGACG

>NZ_AP022618|6|6|1245561-1245638|CRISPRCasFinder
TCGCGCTCGTCGCCCAGCCGACG	GTGCTCAATGGCGCGTCTGGTGTCCTCGCGCT
TCGCGCTCGTCGCCCAGCCGACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022618.1\|WP_083033319.1\|1242442_1242925_+\|DUF3592-domain-containing-protein	unknown	unknown	gnl\|CDD\|378822
NZ_AP022618.1\|WP_083033301.1\|1238947_1239922_+\|o-succinylbenzoate-synthase	unknown	unknown	gnl\|CDD\|235084
NZ_AP022618.1\|WP_083033358.1\|1257961_1258903_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022618.1\|WP_133053005.1\|1253481_1254681_-\|PE-PPE-domain-containing-protein	unknown	unknown	gnl\|CDD\|369775
NZ_AP022618.1\|WP_083033361.1\|1255393_1256419_-\|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|171500
NZ_AP022618.1\|WP_083033318.1\|1240724_1242362_+\|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylic-acid-synthase	unknown	unknown	gnl\|CDD\|236020
NZ_AP022618.1\|WP_083033299.1\|1237267_1238878_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|235731
NZ_AP022618.1\|WP_110810963.1\|1236559_1237231_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_AP022618.1\|WP_083033312.1\|1252574_1253465_+\|zinc-metalloprotease-HtpX	unknown	unknown	gnl\|CDD\|235102
NZ_AP022618.1\|WP_083033321.1\|1248556_1249546_+\|polyprenyl-synthetase-family-protein	unknown	unknown	gnl\|CDD\|223220
NZ_AP022618.1\|WP_083033302.1\|1242917_1243598_-\|thioredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|372611
NZ_AP022618.1\|WP_083033360.1\|1256424_1257924_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224983
NZ_AP022618.1\|WP_083033367.1\|1254778_1255303_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022618.1\|WP_163787786.1\|1258993_1259485_-\|YajQ-family-cyclic-di-GMP-binding-protein	unknown	unknown	gnl\|CDD\|377366
NZ_AP022618.1\|WP_083033305.1\|1244849_1245536_+\|demethylmenaquinone-methyltransferase	unknown	unknown	gnl\|CDD\|234689
NZ_AP022618.1\|WP_083033304.1\|1243695_1244853_+\|glycosyltransferase-family-1-protein	unknown	unknown	gnl\|CDD\|340842
NZ_AP022618.1\|WP_083033315.1\|1235933_1236581_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|225136
NZ_AP022618.1\|WP_083033316.1\|1239927_1240719_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_AP022618.1\|WP_133053004.1\|1249568_1252370_-\|cadherin-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|380078
NZ_AP022618.1\|WP_083033309.1\|1247297_1248518_-\|geranylgeranyl-reductase-family-protein	unknown	unknown	gnl\|CDD\|273936

Protein	Function_ID	Function_description	E-value
NZ_AP022618.1\|WP_083033319.1\|1242442_1242925_+\|DUF3592-domain-containing-protein	gnl\|CDD\|378822	pfam12158, DUF3592, Protein of unknown function (DUF3592). This family of proteins is functionally uncharacterized.This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 150 and 242 amino acids in length.	0.000203035
NZ_AP022618.1\|WP_083033301.1\|1238947_1239922_+\|o-succinylbenzoate-synthase	gnl\|CDD\|235084	PRK02901, PRK02901, O-succinylbenzoate synthase; Provisional.	4.21786e-170
NZ_AP022618.1\|WP_133053005.1\|1253481_1254681_-\|PE-PPE-domain-containing-protein	gnl\|CDD\|369775	pfam08237, PE-PPE, PE-PPE domain. This domain is found C terminal to the PE (pfam00934) and PPE (pfam00823) domains. The secondary structure of this domain is predicted to be a mixture of alpha helices and beta strands.	3.3995e-15
NZ_AP022618.1\|WP_083033318.1\|1240724_1242362_+\|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylic-acid-synthase	gnl\|CDD\|236020	PRK07449, PRK07449, 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated.	0
NZ_AP022618.1\|WP_083033299.1\|1237267_1238878_-\|AMP-binding-protein	gnl\|CDD\|235731	PRK06188, PRK06188, acyl-CoA synthetase; Validated.	0
NZ_AP022618.1\|WP_110810963.1\|1236559_1237231_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	1.03061e-12
NZ_AP022618.1\|WP_083033312.1\|1252574_1253465_+\|zinc-metalloprotease-HtpX	gnl\|CDD\|235102	PRK03072, PRK03072, heat shock protein HtpX; Provisional.	1.50409e-178
NZ_AP022618.1\|WP_083033321.1\|1248556_1249546_+\|polyprenyl-synthetase-family-protein	gnl\|CDD\|223220	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism].	2.33781e-98
NZ_AP022618.1\|WP_083033302.1\|1242917_1243598_-\|thioredoxin-domain-containing-protein	gnl\|CDD\|372611	pfam13462, Thioredoxin_4, Thioredoxin.	1.5913e-06
NZ_AP022618.1\|WP_083033360.1\|1256424_1257924_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224983	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism].	1.90576e-119
NZ_AP022618.1\|WP_083033361.1\|1255393_1256419_-\|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	gnl\|CDD\|171500	PRK12439, PRK12439, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional.	0
NZ_AP022618.1\|WP_163787786.1\|1258993_1259485_-\|YajQ-family-cyclic-di-GMP-binding-protein	gnl\|CDD\|377366	pfam04461, DUF520, Protein of unknown function (DUF520). Family of uncharacterized proteins.	4.41716e-87
NZ_AP022618.1\|WP_083033305.1\|1244849_1245536_+\|demethylmenaquinone-methyltransferase	gnl\|CDD\|234689	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE.	4.40176e-127
NZ_AP022618.1\|WP_083033304.1\|1243695_1244853_+\|glycosyltransferase-family-1-protein	gnl\|CDD\|340842	cd03814, GT4-like, glycosyltransferase family 4 proteins. This family is most closely related to the GT4 family of glycosyltransferases and includes a sequence annotated as alpha-D-mannose-alpha(1-6)phosphatidyl myo-inositol monomannoside transferase from Bacillus halodurans. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in bacteria and eukaryotes.	9.94086e-118
NZ_AP022618.1\|WP_083033315.1\|1235933_1236581_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|225136	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism].	2.05786e-24
NZ_AP022618.1\|WP_083033316.1\|1239927_1240719_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	9.19768e-25
NZ_AP022618.1\|WP_133053004.1\|1249568_1252370_-\|cadherin-like-domain-containing-protein	gnl\|CDD\|380078	pfam17963, Big_9, Bacterial Ig domain. This entry represents a wide variety of bacterial Ig domains.	4.10757e-09
NZ_AP022618.1\|WP_083033309.1\|1247297_1248518_-\|geranylgeranyl-reductase-family-protein	gnl\|CDD\|273936	TIGR02032, Uncharacterized_protein_MJ1520, geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll].	3.58553e-65

>NZ_AP022618.1|WP_083033305.1|1244849_1245536_+|demethylmenaquinone-methyltransferase
MNRATLDKDPHEVASMFDAVARRYDLTNTVLSLGQDRHWRRATRSALQIGPGDRVLDLAAGTAVSTVELGRSGAWCVAADFSVGMLAAGASRAVPKVGADATRLPFADETFDAVTISFGLRNVVDHTLGLAEMARVTKPGGRLVVCEFSTPVIPVFATVYKEYLMRALPAVATAVSSNPEAYVYLAESIRAWPDQPTLAAQIAEAGWSRVRWRNLTGGIVALHAARKD
>NZ_AP022618.1|WP_083033304.1|1243695_1244853_+|glycosyltransferase-family-1-protein
MRVAIVAESFLPNVNGVTNSVLRVLEHLRAGGHEALVIAPDTPRGEDPAPRLHDGVRVHRAPALMFPGVTSLPLGVPLPRLVRVLRGFDPDVVHLASPASLGMGGVLAARRVGVPTVAVFQTDVAGFAASYGMPAASRAAWAWARRLHSMADRTLAPSTATMEALAVQRIPRVHQWARGVDITGFAPSARSEELRRRWSPQGLPIVGFVGRLAPEKHVERLAVLDRMPGVQVVVVGDGVDRAKLERTLPSAVFTGALYGPELAQAYASMDVFVHTGEHETFCQAVQEAMASGLPVVAPDQGGPRDLVTPMQTGLLLGVAEFEAQLPASVGHLLAERRRYAVAARRSVLHRTWPAICEELLGHYRAVARTPMRGPGPSPQALTSSG
>NZ_AP022618.1|WP_083033302.1|1242917_1243598_-|thioredoxin-domain-containing-protein
MRMPRPRWPLLALCAVLFLLTGCSHAVAGTPKAAPPPGVAVSADGFGIRVGLADAAVQLEIFVEPQCPACAAFEADYGPDFRSKLAMGALAITYRPVTFLDLDKADGYSATVANTLFLAGTGADVTAVGFQLYLEGLMDNQDVAGDDYRNSDFADIAREAGLPDAVVARIGSGAGGVDVATMSKQNREALIAATGATPTVINQATGKVIDIDDDDWFDRLFTHAVT
>NZ_AP022618.1|WP_083033319.1|1242442_1242925_+|DUF3592-domain-containing-protein
MLHGPGGQVSHTRSGRIIRRVRIGVLIATALITLQAVLLVAGAWRNDKQIEGNMGVAAAEVLDAGPRRSTIAFVTPDRVTYRPELGVLYPSELDTGMRIYVEYDRDDPNLVRVQHRDARLAIIPAGSIILLAWLVAGALLIGLAVLEIRLDHRRAVNAVR
>NZ_AP022618.1|WP_083033318.1|1240724_1242362_+|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylic-acid-synthase
MNSSTAQAQIVVDELIRGGVRDVVLCPGSRNAPLAFALSDADADGRLRLHVRIDERTAGYLAIGLAVSAGSPVCVAMTSGTAVANLGPAVLEANYARVPLIVLSANRPYELLGTGANQTMEQFGYFGTQLRAAISLGLAPQTGESAPIEALNAQWRSATCRVLAAATGSRTANAGPVQFDIPLREPLVPDDDEAQPPAGRPDRRPWTYTPPVSFDQPLDIDLTPDTVVIAGHGAGVHPNLAALPTVAEPTAPVPANPLHPLALPLLNPEQVIMIGRPTLHRPVSTLLADPAVPVYALTTGPRWPDVSGNSMATGTRAVTHGHPDPAWLHRCAELHRRTVDTVRDELRRNPATTGLHVAAVVADTLGPGDQLVLGASNPVRDIALAGGVADGVRVRSNRGVAGIDGTVSTAVGAALAHDGHTVALIGDLTFLHDAGGLLIGPTEPVPQRLTLVVSNDNGGGIFELLEQGDPRFSDVSSRVFGTPHDTDIAALCRGYRVEHRSVDVADLGAALTAEFTGMRVLEVTADRAPLRGLHAGIRAALRAAG
>NZ_AP022618.1|WP_083033316.1|1239927_1240719_+|alpha/beta-hydrolase
MAYHDGGTGDPVLFIAGRGGAGRTWHLHQTPEFRRHGYRVITFDNRGIGATANAEAFDINTMVADTAELIDTLVGGPVRIVAVSMGSYIAQELMLARPELVTQAVLMATRGRPDRMREIGAVAERAMIDSGVKLPVEYEARNRMLENFSPKTLCDDRAASDWFDMFTMWPAENTPGVRAQLHVSPETNRLAAYRAITAEVLVIGFSHDVLLPPALSAEVAAAIPRGSYLEIPDTGHLGFIEAPGPVNAAMLEFFGGPGSLKLV
>NZ_AP022618.1|WP_083033301.1|1238947_1239922_+|o-succinylbenzoate-synthase
MHLPDLDDLLDRVHVVSLPMRVRFRGVTVREVALIDGPAGWGEFGAFAEYAAPEAAHWLAAGVEAAYRPLPPVRRDRIAINATVPAVPPEQVPAVLARFPGARTAKVKVAEPGQTLADDVARVGAVRAQIPTVRVDANGGWTVEQAVAAAAALTADGPLEYLEQPCATVAELAELRRRTDVPVAADESIRKADDPLRVVRAGAADVAVLKVAPLGGVGPLLRIADQVNVPVVISSALDSAVGIGIGLAAAAALPQLTHACGLGTGRLFVEDVADTPDPVDGFLPVNRAAPDPDRLTALAAPPDRRDWWLDRIRECHGLLDSVAR
>NZ_AP022618.1|WP_083033299.1|1237267_1238878_-|AMP-binding-protein
MPDDLLRHPVHSGHLLIGALKRHRDTPVLHLGDTTLTGGQMADKISQYTQAFEALGAGSGEVSGLLSLNRPEVLMITSAGQTRGYRRLALHPLGSLDDHAYVLADSGATSLIIDPNPAFTERAIGLLGKVPALRQVLTIGPVPPELAATGARVVDLTAEADKYQPRPLEAANLAPDYVNGLSYTGGTTGKPKGVMMTTQATTTMTTIQLAEWEWPEHPKFLMLTPLSHAGAAYFLPTLVKGGEMHVMARFDPGEALRYIEEHRITATFVVPAMLYALMDHPDSRTRDLSSLQTVYYGASAINPVRLAEAISRFGKIFAQNYGQSEAPMAISYLAKDEHDDLRLSSCGRPTLFARCALLDPDGNPVPRGEVGEVCVSGPLLAGGYWKLPEETAKTFSGGWLHTGDMAREDSDGFWFIVDRVKDMIVTGGFNVYPREVEDVVAEHPSVAQVCVVGAPDHKWGETVTAVVVLRPDAGTDEASIAAMSAEIQAAVKERKGSVQVPKQIVVVDALPLTGLGKPDKKAVRARFWEGAGRSIG
>NZ_AP022618.1|WP_110810963.1|1236559_1237231_-|helix-turn-helix-transcriptional-regulator
MRDGYAVYRGPVTDGPIHRHGAFQIAIAIEGEVAMAGPTGIRYRAPTLLVAPMAPHRIEASPDLLTYYVDPQCAFADTLRTRYDSGINPAPELGALREQDIAAVGATASSQLDPRLISALDLLRNRSAAIPDIAAAVDLSPQRLRALARGQLGMPLARWRVWSRLRRAAEAMRDGASVADAAVTAGFSDQAHLSRQMRDMMGLTPAAVAPLLANLGAQPFTAT
>NZ_AP022618.1|WP_083033315.1|1235933_1236581_+|methyltransferase-domain-containing-protein
MTEPDFTPALGRLAPARFFDAVVALTRERLWRALTAAYAAPRPGEVIVDVGCGTGTLALQLKRVAPAATVIGVDPDPDVLAVARTKVGAPGVHWRAGMGDRLVELLGASSADTVVSSLVLHQCPIPMKEAILAAMYDVLRPGGRLVIADFGLQRTWLMRNLFRIVQLADGKTDTQPNADGVLPELMRAAGFPEVREAEVVPTVNGTISIYVAVKG
>NZ_AP022618.1|WP_083033309.1|1247297_1248518_-|geranylgeranyl-reductase-family-protein
MDTDVEVAVVGAGPAGSAAAAWAARAGRDVLVIDAAEFPRDKTCGDGLTPRAVAELRLLGLGDWLGRHISHTGLRLRGFGSAVEVPWPGPGFPSTSSAVPRTELDDTIRSVAEKDGAAMRLGAKAVDVEYDGAGRLRAVLLADGSRIGCRRLIVADGARSTLGRVLGRTWHRETVYGVAARGYLASPRHDEPWISSDLELRSVDGSVLPGYGWIFPLGNGEVNIGVGALATARRPADIALRPLMEHYTYLRREDWGFQGSPRAVASALLPMGGAVSGVAGPNWMLIGDAAACINPLNGEGIDYGLESGRMAAELLGTEDVSAAWPDTLARHYGRGFSVARRLGLLLTVPRFLPLAGPLGLRSPRMMKIAVRVMGNLVTDEDADAVARLWRIAGAGSRLGDRRKPFH
>NZ_AP022618.1|WP_083033321.1|1248556_1249546_+|polyprenyl-synthetase-family-protein
MVAGVDFGDAELARAVRDGVDRVEVLMRAELGRADDLMAEAVQHLFTAGGKRFRPLFTVLCAQLGPDPDSEQVTVAGAVIEMVHLATLYHDDVMDEAQVRRGAPSANARWGNNIAILAGDYLFATASRLVSQLGPAAVLIIADTFAELVTGQMRETRGATDGNDEIEHYLKVVYEKTACLIAASGRLGATFSGADDQQIERLATLGGIVGTAFQISDDIIDIESEADESGKLPGTDLREGVHTLPVLYALRETGPDADRLRTLLAKPLTDDDEVAEALALLRASGGIAKARETVRDYARRADEQLAALPDLPGRQALASLVEYTVTRHG
>NZ_AP022618.1|WP_133053004.1|1249568_1252370_-|cadherin-like-domain-containing-protein
MNVETNTARIAGLALALGLGAAVAAGGIPSAAADGGTNTEHRDAPDTHRDAADGPRQRDTSRTHRQPLAAIRDIARSVAEQGRTAISHTPLPADRQTRSENVSTTIDSTSETNRPDTLPLGTRLPRQRDVPAAAERPDRPRPQHSLPDLADLSTPRKTSAAPVSIPRISIAQFTGAPERPEQRVPTLAAHIEDTATAFTAKLVGAVTFAAPSAPETATPGVEQRGTLTTTTTPSAPGGVIQRMLGVLGSLMSGDSANPGHTGGTENPIALALVGWVRRELFNAAPQASTPVTMTGNTLTLDATDPDGDPLTYTVTQPAVGSVEQTSPGVFTYTPEAGHTEATSFTVTVSDADSGFHLHGLAGLFAPDGGHTKTVVVNVPPQDVEQHGPEITPVPMDLPVGYSSSGNSFVGSNGTAAQYASHTDTATNQTIYALAVRDSTGITKVVDLEGKPVEGQDPLITDSAVVQNIQRADGTYALVVVPTASPAPAPQSFARLAPAVLTTFDAPPESATYNLNGKPVGDAVAGADGIIYQSVNPTPSTNDGIACSNCQVAVVDTSKIADPGYSPTAVDIPGLFSPGFSTAGGIKQSGLSTDSSGRLYVVQWSPTSNIWVIDPDNVDTAAANDGATVIPLGGTTGGGLKVAFGPDGKGYIGTSTASGGQVEIIDPSSRTVEKTVAMPAAPSAAQAINAGTVFANGTVYQQQVLLLPTGVSSAPYSYQSRMVTFPVGGPTAGVDPQVIAFPGDSNFGYGTPVAGADGTVYQGMVDGVNGTTLRTGIIRPGETTPIVVALGPSSTATYNSPVVTGSGQAYQVTSTKNTDDSGVTTVFRLSDADADQTNHPLQPVVTIDEHSVPAAGVAAPDGTLYFATQKDGTVTVWSLAKDSNQAQQTVFTGQGTPSAFQVGSDGHVYMTTTSADGTQSWVYAIDAADPTVTV
>NZ_AP022618.1|WP_083033312.1|1252574_1253465_+|zinc-metalloprotease-HtpX
MHWHPTENRLKTFVLLVGFTALISFVGYLFSAATGNRIWIWVALVFALATNAYTYFNSDKLALRAMHAQPVTELQAPAMYRIVRELATAAHQPMPRLYISDTANPNAFATGRNPRNAAVCATTGILAILDERELRAVLGHELSHVYNRDILISCVAGAMASVITALANLAFFAGMMGRGDSRGGGNPLALLLIQLLGPLAATVIRLAVSRSREYQADESGAELTGDPLALASALRKISGGVQQAPLPPEPALADQAHLMIASPFRAGEKIGRMFSTHPPIEDRIRRLEKMAGRLGH
>NZ_AP022618.1|WP_133053005.1|1253481_1254681_-|PE-PPE-domain-containing-protein
MRGSVTSITMTIAMAAATVTATLAVTPAGDPVTVPFSQVALIIEGSSTNQGGDGIADFYGGRFKDGDTPVVVNFLTGPLGIWQALQASPGHNTVLSSGWGAANASLLLSALQATGQPVPADSTWVLDNNVTNPNGGFGTRYPVFAAIGVNPLPTALPDGSPVVISTATEYDLNSSAPKYILNPVADLNSLATYLDKRLGQSALTLPVNDDGTPGCGIASACHPNDDGTYTVTVDGKEVDAQVTKVGGVTYVGYRTDHLPLLSPLRNYGGAVGNQLAGAAEPALRAVVNYGYPDNDPLGNPGIYQPAGLVPSASETRTFLKNFRTGVNQGAATLTAGSSATRFTVRGGPAATPTITTPKLPSARAVARQVATNLGVKHGEPSAQHAEPSVRHRPSRAEKD
>NZ_AP022618.1|WP_083033367.1|1254778_1255303_+|hypothetical-protein
MRSTVLIGAVAATVLAAPTAWADPEPTPEPPPVNAQTLTMISPKPYMVNDGVYAFTAPIGVTCVMTKASRSYGCSGTLPGAPGGANVVTGGPSGEPGFASTDRPIYGFSETPKELPEGSRLGMGTVSCGVLAGGVVCSNSYDQTGFVIASGGSYAFGAVNPLLDRPEGTNPYAN
>NZ_AP022618.1|WP_083033361.1|1255393_1256419_-|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase
MSAAQREPKVVVLGGGSWGTTVASICARRGPTLQWMRSAETAADVNENHRNSAYLGDEAVLPDSLRATTDFAEAANCADVIVMAVPSHGFRGVLEELATQLRPWVPVVSLVKGLEQGTNLRMSEIVEEVLPGHPAGILAGPNIAREVAEGYAAAAVLAMPDQHLAANLAKLFRTKRFRTYTTDDVIGVEMAGALKNVYAISVGMGYSLGIGENTRAMVMARAVREMSKLGEAVGGQRDTFAGLAGMGDLIVTCTSQRSRNRHVGEQLGLGKTVEEIIASMNQVAEGVKAASVVMEFADEYGLNMPIAREVDAVINHGASVEQAYRGLIAEKPGHEVYGSGF
>NZ_AP022618.1|WP_083033360.1|1256424_1257924_-|NAD(P)/FAD-dependent-oxidoreductase
MGSGTEVLDVLIIGAGISGLGAAHRITEANPGVDYLILERRERVGGTWDLFRYPGVRSDSSIFSLSFPWEPWTRREGVADGADIRDYLEQTARRHGIYRHIRFSTHVLSVDWDSATDTWTVRCESDGGATTYRARFLFFGSGYYDYDAGYTPDFPGIDEFAGTVVHPQHWPEDLDCAGRQVVVIGSGATAVTLVPALARAGAKVTMLQRSPTYVAAGARVSPSTEVVRKLLPRKASHRFARDKGAVLEGVVWFLCRKAPHSMRRYIRTRAIKKLPEGYPVDVHFNPRYDPWDQRVCLDADGDLFASIRDGATEVVTDTIERFDATGIWLASGTHLRADVVVTATGLALQALGGVRVSLDGTGIDPAERFVYKAHLIEDVPNLAWCVGYTNASWTLRADMTAKSVAKLLSHMSSHGYTHAYPHRGDLPLTEKPSWDINAGYVQRARHTLPKSGTKRPWHVRQNYFADAIDHRFDRIGPEMVFGRSAASSTSPAGAVGTLA
>NZ_AP022618.1|WP_083033358.1|1257961_1258903_-|hypothetical-protein
MNTPTHPTRLAGTAAAALIAAGLVIAPLAHASTEDDLNARVASARAAAGCAPLTWAKPGATVAWYSSWINADYNIAEPGTRGSEYLFPEPPPIDLGVNPQTDPVGSLDKVGAKADRAVVIDQSDSRDRYAVDDLMNKAAGAIADCGYDTFGTGNYRRDGSDLSSVAVALYTAHKEAPSTGPRGGIDGIDKTVTIPPGLTENMTNSTVDYSLVAQGLPLASINISYLGDNNQIVNENNVGVTAGYKWTKTVTAKNTDTPWLKVSVNSAGLAGLKLDCSVAVDSMVQKVNAPDPNKSGTIEFKSGLTPEPAKACG
>NZ_AP022618.1|WP_163787786.1|1258993_1259485_-|YajQ-family-cyclic-di-GMP-binding-protein
MADSSFDIVSKIDRQEVDNALNQAAKELTTRFDFRGTDTTIAWKGEESIELVSSTEERLKAAVDVFKEKLIRRDISMKAFDAGEPAASGKTYKVTGTLKQGIDSENAKKINKLIRDDGPKGVKTQIQGDEIRVSSKKRDDLQAVIALLKGADLDVALQFVNYR

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Crispr_ID: NZ_AP022618_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022618_7

1551461-1551542

Orphan

Consensus_repeat	Method
GACCCGCCGGGTTCGGCGAGCGGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP022618_7

>merge|NZ_AP022618|7|1551461-1551542|CRISPRCasFinder
GACCCGCCGGGTTCGGCGAGCGGCGCTTTTCCGCGAGCACGAGGCCCGGCGGCGACTGGACCGCCGGGTTCGGCGAGCGGCG

>NZ_AP022618|7|7|1551461-1551542|CRISPRCasFinder
GACCCGCCGGGTTCGGCGAGCGGCG	CTTTTCCGCGAGCACGAGGCCCGGCGGCGACT
GGACCGCCGGGTTCGGCGAGCGGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022618.1\|WP_083031148.1\|1549833_1550502_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022618.1\|WP_083031957.1\|1539949_1541089_+\|GuaB3-family-IMP-dehydrogenase-related-protein	unknown	unknown	gnl\|CDD\|236322
NZ_AP022618.1\|WP_083031145.1\|1555093_1557346_+\|phosphoenolpyruvate-synthase	unknown	unknown	gnl\|CDD\|235809
NZ_AP022618.1\|WP_083031140.1\|1548132_1549668_+\|glutamine-hydrolyzing-GMP-synthase	unknown	unknown	gnl\|CDD\|234614
NZ_AP022618.1\|WP_163787815.1\|1552152_1553184_-\|nucleoside-hydrolase	unknown	unknown	gnl\|CDD\|239119
NZ_AP022618.1\|WP_083031952.1\|1543840_1544380_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NZ_AP022618.1\|WP_083031954.1\|1542869_1543772_-\|TauD/TfdA-family-dioxygenase	unknown	unknown	gnl\|CDD\|225086
NZ_AP022618.1\|WP_083031129.1\|1562517_1563159_+\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|380311
NZ_AP022618.1\|WP_083031132.1\|1558824_1562082_+\|error-prone-DNA-polymerase	unknown	unknown	gnl\|CDD\|235553
NZ_AP022618.1\|WP_083031949.1\|1545005_1546169_-\|mycobactin-biosynthesis-acyl-ACP-dehydrogenase-MbtN	unknown	unknown	gnl\|CDD\|224871
NZ_AP022618.1\|WP_083034020.1\|1547747_1548008_-\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|180304
NZ_AP022618.1\|WP_163787816.1\|1553180_1554068_-\|thioesterase-family-protein	unknown	unknown	gnl\|CDD\|224857
NZ_AP022618.1\|WP_083031127.1\|1563168_1563633_-\|tRNA-(cytidine(34)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|223297
NZ_AP022618.1\|WP_083031130.1\|1562083_1562494_-\|TIGR03667-family-PPOX-class-F420-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|132706
NZ_AP022618.1\|WP_083031125.1\|1563651_1564209_+\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NZ_AP022618.1\|WP_163787814.1\|1546165_1547740_-\|long-chain-fatty-acid--ACP-ligase-MbtM	unknown	unknown	gnl\|CDD\|180289
NZ_AP022618.1\|WP_083031135.1\|1554204_1555083_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NZ_AP022618.1\|WP_083031951.1\|1544403_1545003_+\|acetyltransferase	unknown	unknown	gnl\|CDD\|379237
NZ_AP022618.1\|WP_083031955.1\|1541140_1542865_+\|GMC-family-oxidoreductase	unknown	unknown	gnl\|CDD\|225186
NZ_AP022618.1\|WP_083031133.1\|1557342_1558704_-\|wax-ester/triacylglycerol-synthase-family-O-acyltransferase	unknown	unknown	gnl\|CDD\|274360

Protein	Function_ID	Function_description	E-value
NZ_AP022618.1\|WP_083031957.1\|1539949_1541089_+\|GuaB3-family-IMP-dehydrogenase-related-protein	gnl\|CDD\|236322	PRK08649, PRK08649, GuaB3 family IMP dehydrogenase-related protein.	0
NZ_AP022618.1\|WP_083031145.1\|1555093_1557346_+\|phosphoenolpyruvate-synthase	gnl\|CDD\|235809	PRK06464, PRK06464, phosphoenolpyruvate synthase; Validated.	0
NZ_AP022618.1\|WP_083031140.1\|1548132_1549668_+\|glutamine-hydrolyzing-GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
NZ_AP022618.1\|WP_083031954.1\|1542869_1543772_-\|TauD/TfdA-family-dioxygenase	gnl\|CDD\|225086	COG2175, TauD, Probable taurine catabolism dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism].	3.08028e-87
NZ_AP022618.1\|WP_083031952.1\|1543840_1544380_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	8.39917e-15
NZ_AP022618.1\|WP_163787815.1\|1552152_1553184_-\|nucleoside-hydrolase	gnl\|CDD\|239119	cd02653, nuc_hydro_3, NH_3: A subgroup of nucleoside hydrolases. This group contains eukaryotic and bacterial proteins similar to nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. .	3.87921e-135
NZ_AP022618.1\|WP_083031129.1\|1562517_1563159_+\|nitroreductase-family-protein	gnl\|CDD\|380311	cd02062, Nitro_FMN_reductase, nitroreductase family protein. Proteins of this family catalyze the reduction of flavin or nitrocompounds using NAD(P)H as electron donor in a obligatory two-electron transfer, utilizing FMN or FAD as cofactor. They are often found to be homodimers. Enzymes of this family are described as NAD(P)H:FMN oxidoreductases, oxygen-insensitive nitroreductase, flavin reductase P, dihydropteridine reductase, NADH oxidase or NADH dehydrogenase.	8.64593e-27
NZ_AP022618.1\|WP_083031132.1\|1558824_1562082_+\|error-prone-DNA-polymerase	gnl\|CDD\|235553	PRK05672, dnaE2, error-prone DNA polymerase; Validated.	0
NZ_AP022618.1\|WP_083031949.1\|1545005_1546169_-\|mycobactin-biosynthesis-acyl-ACP-dehydrogenase-MbtN	gnl\|CDD\|224871	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].	1.89942e-51
NZ_AP022618.1\|WP_083034020.1\|1547747_1548008_-\|acyl-carrier-protein	gnl\|CDD\|180304	PRK05883, PRK05883, acyl carrier protein; Validated.	1.23394e-37
NZ_AP022618.1\|WP_163787816.1\|1553180_1554068_-\|thioesterase-family-protein	gnl\|CDD\|224857	COG1946, TesB, Acyl-CoA thioesterase [Lipid metabolism].	9.2281e-69
NZ_AP022618.1\|WP_083031127.1\|1563168_1563633_-\|tRNA-(cytidine(34)-2'-O)-methyltransferase	gnl\|CDD\|223297	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis].	6.44575e-75
NZ_AP022618.1\|WP_083031130.1\|1562083_1562494_-\|TIGR03667-family-PPOX-class-F420-dependent-oxidoreductase	gnl\|CDD\|132706	TIGR03667, Rv3369, PPOX class probable F420-dependent enzyme, Rv3369 family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN. [Unknown function, Enzymes of unknown specificity].	1.87032e-43
NZ_AP022618.1\|WP_083031125.1\|1563651_1564209_+\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	2.72677e-24
NZ_AP022618.1\|WP_163787814.1\|1546165_1547740_-\|long-chain-fatty-acid--ACP-ligase-MbtM	gnl\|CDD\|180289	PRK05851, PRK05851, long-chain-fatty acid--ACP ligase MbtM.	0
NZ_AP022618.1\|WP_083031135.1\|1554204_1555083_+\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	4.21943e-25
NZ_AP022618.1\|WP_083031951.1\|1544403_1545003_+\|acetyltransferase	gnl\|CDD\|379237	pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	2.69184e-50
NZ_AP022618.1\|WP_083031955.1\|1541140_1542865_+\|GMC-family-oxidoreductase	gnl\|CDD\|225186	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism].	7.40845e-73
NZ_AP022618.1\|WP_083031133.1\|1557342_1558704_-\|wax-ester/triacylglycerol-synthase-family-O-acyltransferase	gnl\|CDD\|274360	TIGR02946, Putative_diacyglycerol_O-acyltransferase_Mb3115, acyltransferase, WS/DGAT/MGAT. This bacteria-specific protein family includes a characterized, homodimeric, broad specificity acyltransferase from Acinetobacter sp. strain ADP1, active as wax ester synthase, as acyl coenzyme A:diacylglycerol acyltransferase, and as acyl-CoA:monoacylglycerol acyltransferase. [Unknown function, Enzymes of unknown specificity].	2.3728e-121

>NZ_AP022618.1|WP_083031148.1|1549833_1550502_+|hypothetical-protein
MGVSAPENRADQLEQLRKRMAAISGRVGSSHRGPGTATARALPDVAPESLLPVPESLLGVLPGGLPRGSVAVTSGARSLPLGIAAAVTAAGGHAAIVGLPGAGLLAAAEMGADLSRIAMIPDPGPDPVEVAAVLTDGMDLVLLGMTGTAVSPGRARVIGGRLRHRGAVLVVVGGDWPGPALRLDARVRGYETTVAEPGRGRLCRVRLAVRARGRGVGIPRPA
>NZ_AP022618.1|WP_083031140.1|1548132_1549668_+|glutamine-hydrolyzing-GMP-synthase
MLVVDFGAQYAQLIARRVREARVYSEVIPHTATAAEIAARQPLAVVLSGGPASVYADGAPGIDPALFDLGVPVFGICYGFQAMAVALGGTVARTGASEYGRTELNVTGGQLHSGLPGTQPVWMSHGDAVTAAPPGFQVTAASAGAPVAAFEDRARRLAGVQYHPEVLHSPHGQQVLSRFLHEFAGIDAAWTPANIAEGLIEAVRVQIGDGRAICGLSGGVDSAVAAALVQRAIGDRLTCVFVDHGLLRAGERTQVERDFVAATGARLVTVDAQAQFLDALSAVSNPEGKRKIIGREFIRSFEAAVRDTLGSSEAETEFLVQGTLYPDVVESGGGTGTANIKSHHNVGGLPDDLKFTLVEPLRLLFKDEVRAVGRELGLPEEIVARQPFPGPGLAIRIVGEVTAQRLATLRRADAIAREELTMAGLDNQIWQCPVVLLADVRSVGVQGDGRTYGHPIVLRPVSSEDAMTADWTRVPYEVLERISTRITNEVPEVNRVVLDVTSKPPGTIEWE
>NZ_AP022618.1|WP_083034020.1|1547747_1548008_-|acyl-carrier-protein
MESSTPERIDAALEEILRDDLNVDISRVTRESRLVDDVGLDSVAFAVGMVAIEDRLGVVLTEEDLLTCDTVGDLENAILAKVPTAK
>NZ_AP022618.1|WP_163787814.1|1546165_1547740_-|long-chain-fatty-acid--ACP-ligase-MbtM
MNVLASALTRAMTESANDLVVLDSARAEWIRHPWAEVHARGLAVAQRLLDGTRGEVGLVGEPTVEFVAAIHGAWLAGRAVSILPGPVRGADVGEWARATLDRFAGIGVGAVFSHGPTLDPLRGSGALPVLDLPDVAAPGSTTPLTPPATDGPAVLQGTAGSTGTPRTAALPAEAVLNNLSGLLQRTSTDSSVDVGLTWLPLYHDMGLSFLLSGALSGCETWLAPTGAFSASPFRWLNWLSESRATLTAAPNFAYNVLGKYARRISDIDLGALRFALNGGEPIDCDGLALFLTEMARFGLDPGAAAPSYGLAESTCAVTAPVPGSGLRYDEIRDDATGSVRKQATLGHPVPGMELRLAPIDHEQSDIPGRDVGQIEIRGSSMMSGYLGEAPLDPQTWFPTGDLGYLTDDGLVVCGRVKELITVAGRNVFPTEVERVAAQVRGVREGAVVAVGTAADALRPGLVITAEFRGPDEAGARAELVSRVASQCGLVPADVRFVAPGTLPRTSSGKLRRLAVKQELEVTRG
>NZ_AP022618.1|WP_083031949.1|1545005_1546169_-|mycobactin-biosynthesis-acyl-ACP-dehydrogenase-MbtN
MTAATEIGVDEYRQLLGEVFDERVKAWTAEAEKTERFPRALIEYLGSSGVFTAKWGDHQHPDVAKLLELAYRLGHLGSGGIGVGVSLHDSAIAILRRFGKSEHLKDIAERAIRGEAVLCIGASEESGGSDLQIVETEVRSERGGFAISGRKKFVSLSPIADYVLVVARSVDHDPASRHGNVLLIAVPLAQTEVQTPYRKVGAGPLDTAAVHIDTWVPAEALIARAGTGLAAISWGLAHERMSIAGQVASSCQKVLGITHARMVTRRQFGATLFEHQALRMRMADMQARVDLLRHGLNGIAAGGKLDLRTAAAVKVSAARLGEEVLAECMHIFGGAGYLVDETPLGRWWRDMKLARVGGGTDEVLWELVAAAMKPDFDGYREMIGPAE
>NZ_AP022618.1|WP_083031951.1|1544403_1545003_+|acetyltransferase
MSTLPRELTDVSDAVAAVPAPPIPVVAEPYSIRLVEPDRDAGMVSEWMNRPHLVTGWESAWPVDRWHTYLEAQLAGEYSRPLIGGFRGQPHGYIEIYRAAKDSIAPRYDADPHDLGMHAAIAELRMVNRGFAPLLLPRLTAALFDLDPDCRRIMFDPDHRNDGARRLCEWAGCEFLGEHQMSNRRMALYALHRPARRAV
>NZ_AP022618.1|WP_083031952.1|1543840_1544380_+|helix-turn-helix-transcriptional-regulator
MSTDVPSGRDEVSAAVLAAAAELFAERGPSATSIRDVAARAKVNHGLVHRHFGSKEKLVGAVLDHLAAELNTLLDAGAPEADIDRALDRQARVVVRALMDGYPVGELQSSFPNIARLLDRVSPGVDDLSARVAAANLLATQIGWRLVGPYLVTALGLEELSEEQLRAAIKGPWPKVNLP
>NZ_AP022618.1|WP_083031954.1|1542869_1543772_-|TauD/TfdA-family-dioxygenase
MTSPATSPLTITRLGSALGARIDGIALDGDLAPETVAGIRAALLRHRVIFFRGQHHLDDAGQRRFAELFGTPIGHPAGAHLAGAEAPVITPLDSRYGKADRWHTDVTFTVDYPAISVLRPVTLPPYGGSTLWASTAAAYAELPEPLKRLTENLWALHSNRYDYAAAAPLSEEQRLLRAAFEKPDFRTEHPVVRVHPETGEPVLVAGQFVRGFTGLDAVESTTLLELLQRRITAPQNTIRWNWEYGDVAVWDNRSTQHCAVADYDDQHRVMHRVTLMGDVPVDMHGRPSRCVAGSPLAPAA
>NZ_AP022618.1|WP_083031955.1|1541140_1542865_+|GMC-family-oxidoreductase
MEPDFDVLIIGSGFGGSVSALRLTEKGYRVGVLEAGRRFSDAEFANTSWDLRKFLWAPQLGCYGIQRIHLLRNVMILAGAGVGGGSLNYANTLYVPPEPFFADKQWAHITDWKAELMPHYEQAQRMLGVVTNPTITDADKVMKAVADDMGCGDTFVRTPVGVFFGRDGQQEPGKTVPDPYFGGAGPTRTGCIECGECMTGCRHGAKNTLVKNYLGLAESAGAQVFPMTTVTGFSQRGDGIWEVVTVPTGRKVRRKKTTFTARHLIVAAGTYNTQKLLFKVRDAGQLPKLSDQLGVLTRTNSESIVGAGRLEVGSDLDLTHGVAITSSIHPTPDTHVEPVRYGKGSNAMGLLQTLMTDGAGPEGTDVPRWKQLVDQTRENPRRMMRLLNPKQWSERTMIALVMQHLDNSITTFTRKTKAGVRVMDSKQGHGEPNPTWIPAGNEVTRRIAAKIDGVAGGTWGEIANIPLTAHFLGGAVIADDPEHGVIDPYQRVHGYPTLHVMDGTAVSANLGVNPSLTITAQAERATSLWPNKGEDDARPAQGKPYIRMDPVAPAKPVVPLGAPGELRRLPIEPV
>NZ_AP022618.1|WP_083031957.1|1539949_1541089_+|GuaB3-family-IMP-dehydrogenase-related-protein
MRDLVEIGMGRTARRTYELDDINIVPSRRTRSSQDVSTAWQLDAYRFEIPVLAHPTDALVSPEFAIELGRLGGLGVLNGEGLIGRHADVEAALARVLEAAAAEPDEPNAAIRLLQQLHAAPLDLELLGAAVGRIRDAGVTTAVRVSPQNAAALTPTLVAAGIDLLVIQGTIISAERVANDGEPLNLKTFISELDVPVVAGGVLDHRTALHLMRTGAAGVIVGYGSTLGVTTSDEVLGISVPMATAIADAAAARREYLDETGGRYVHVLADGDIHTSGDLAKAIACGADAVVLGTPLASAAEAQGQGWYWPSAAAHPSLPRGALLQVEVDDRPSLQRVLTGPSDDPFGSLNLVGGLRRAMAKAGYCDLKEFQKVGLSVRS
>NZ_AP022618.1|WP_163787815.1|1552152_1553184_-|nucleoside-hydrolase
MSGSVGSRPRLPVFADVDTGVDDAMALVYLLASPEAELVGVASTAGNVGVAQVCENNLALLALCGAPDIPVSTGSAVPLSIPLRTAEDTHGPAGLGYAELAPASSSPTDYDAATAWIRAARDHPGELIGLATGPLTNLALALRAEPELPRLLRRLVIMGGSFEYRGNTTPVAEWNIAVDPEAAAEVFTAWGAAVADGHRGELPIVCGLNITERMALRPPYLAELAAAAGVPGDPSANPLVRVLTDALRFYFEFHESVGEGYLAHVHDPFAAAVALDPSLVITRDATIGVELGGALTRGMTVADWTGHWGRPANARIAVDGPGLPQVFFDRYLVRVAAFARGLS
>NZ_AP022618.1|WP_163787816.1|1553180_1554068_-|thioesterase-family-protein
MAVSLNDILAVLRPLPDGPNVYLGPQPDDGAARTRVYGGQVAAQSALAAADTVGDRRLHSLHVAFLRPGNPRIPLRYEVTVLREGRTLSTRRVTVTQDGVFLMEALASFIAPVDGPEFAAGIPRVPAPESLPRVVEQLEPDDFSVAEAAELAWLNTWDMRYVDPPPLRSAIRRAGPVPADAPAQCRMWLRAATAPPVQLLTDPLLATGLLIYLTDWSVLDPVQLAVGRNWADLEVMASLDHAVWFHRPVDFSDWLLFDHRSPSASGGTGLGCGEVYNRSGALVCTVTQEGFLGRR
>NZ_AP022618.1|WP_083031135.1|1554204_1555083_+|universal-stress-protein
MSTAESTGAVLVGVDGSVSSRVAVDWGARYAKLHNQPLRLVNIISSPVMMAWPEAPLPDGYLQWQEEQSRDLLDAAVATAAEAVTGVEVTTEILSGPTVATMIELTREAGIVVVGCRGRGALARGLLGSVSSTLVRHAHCPVAVVHDEDPLMADPAKAPVLVGIDGSRASEAATAIAFDEASRRGVDLVAVHAMSDADVLSMPGQQFSEFEQRGQEVLAERLAGYSERYPDVAVRRIVVWDKPANTLIEQSDNAQLVVVGSHGRGGFTGMLLGSVSASVVQAVRMPVIVARA
>NZ_AP022618.1|WP_083031145.1|1555093_1557346_+|phosphoenolpyruvate-synthase
MIKGFDELRLTDAEEAGGKGANLGEMAGAGLPVPPGFVLLRDAYLESMRAAGVDRELVKLHREAIAASGDETRLGELSNRCRDLVARAGMTEAVRTELLEHYRRLGADVVVAVRSSATGEDGKDASFAGMNETLTNIAGDEDLLDAVRRCWMSLFGPRVIAYRASRGFTAEPAMAVVVQTMIASQRSGVAFTADPSTGARDHVVVEAALGQGEVVVSGLVQPDTYVLDKNGCKILDVRVGHQDFRIVRGPDGHDRTEDLDPALADARVLDDDELYRVAKLVVAVEAHYGCPQDTEWAIVDGVIWLVQARPITTLGSAAPAAGTVLARGLSAAPGVAGGRVRVLRSPDQGVALVTGEVLVAPMTNPDWLPTLRRAAAIITDTGGMTCHAAIVARELGVPCIVGARTATTDLADGTEVTVDGTHGQVRAGAPAAAPAAVTVTERSGPVVAAEVTATKIYVNLAMPDSAETVAAQDVDGVGLLRAEFILTEALAGRHPRAMMAAGESDALVDALAGAVGRIAAAFGNRPVIYRATDFRSNEFANLVGGAEYEPVEHNPMIGYRGCYRYVKEPELFALECRALARIRETSPNLGLMIPFVRTKWELEECLSLVDASELGRQRGLHRWVMAEVPSVVHWLPQYIGLGIDGVSIGSNDLTQLMLGVDRDSDVCAELFDTADEAVLDAIGQIIAAARRGGITSSLCGQAPSNDPAFAEHLVRMGITSVSVNPDAAAAARRVVAAAERRILLEAARGN
>NZ_AP022618.1|WP_083031133.1|1557342_1558704_-|wax-ester/triacylglycerol-synthase-family-O-acyltransferase
MERLSVLDAGFLQVEDSDPRVSLAIGSVTILEGPAPDFEEFTTVLGGRLAAAPRLRQVVRTHPLDLEPPHWADVDELDLGHHLRRVALPAPGGDAELFDLVSEIIERRLDRNYPLWECWLVEGLADDRWALIVKLHHAVADGVSATAMMAALNDDDGTTGSFATHLHEAHETEHPSLLSRISLNPLDWGKAAWELSAGAADLAIQTVRGSVTIVGDMVRPAPESSLNGPVGSLRRYRAVRVPIADIRAIAHAFDATFNDVALAAVTHGYRQVMLNRGESPRPDSLRTLIPVSVRDTAALDTPDNRVSLMLPLLPVDLQTPLEQLKTLRRRMRRAKSSGQRQAGANVVDVANRFLPFPLTAWTVRAVSRLPQRNIAGLATNVPGPREQVRMLGRTVVAMLPIPPLAVRLRIGVAMLSYADDLTFGILADYDSNPDLDLLAEGIESAVADLARQV
>NZ_AP022618.1|WP_083031132.1|1558824_1562082_+|error-prone-DNA-polymerase
MGWHSGPPSWAEMERVLDGRPRRAGLPLTSAARPEPRAPRCGPAEVAYAELHAHSAYSFLDGASTPEELAAEAARLGLRALALTDHDGLYGVVRLAEAARELELATVFGAELSLDPGPGQRTEVPDPPGPHLLVLARGPEGYRRLSRQLAAAHLVGGRKGKPRYDFDALTEAAGGHWHILTGCRKGHVRTALSDGGPAAAAAALADLVDRFGADRVSVELTHHGGPLDDERNAALAELAPRFGVGLIATTAAHFATPERGRLAAAMGAIRARESVSSAAGWLAPLGGAHLRSGAEMAAIFAHRPEVVTAAAELGEQCAFGLALIAPRLPPFDVPAGHTEDSWLRELVHRGAGRRYGTPDSAPRAYAQLERELGIIAALGFPGYFLVVHDIVAFCRDNDILCQGRGSAANSAVCYALGVTAVDPIVNELLFERFLSPARDGPPDIDIDIESDRREEVIQYVYTRYGREHAAQVANVITYRRRSAVRDMARALGFSQGQQDAWSRQISRWGGARDAPEVEGIPEQVLELAGQIKDLPRHLGIHSGGMVICDRPIADVCPVEWARMENRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAKDLIAEHQGIAVDFATLDLSEPAVYEMLQRADSVGVFQVESRAQMATLPRLKPRNFYDLVVEVALIRPGPIQGGSVHPYIRRRNELEPIHYDHPSMEPALRKTLGVPLFQEQLMQLAVDCAGFTPAEADQLRRAMGSKRSTERMRRLRGRFYQGMERLHGITGELAERIYEKLEAFANFGFPESHALSFASLVFYSSWLKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVLVHGPCVNASSVHADLENAGTEIRLGLGAVRHIGEDLATRILEERNTNGRYHSLLDLTGRVQLSVPQTEALATGGALGCFGTDRRQALWAAGAAAAERPDRLPGIGTAAAAPSLPGMSRLELAAADVWATGVSPDSFPTEFLREALDERGVLAAARLLGVPDGTRVLVAGAVTHRQRPATAGGVTFVNLEDETGMVNVLCSPGVWARYRRLAQTAPALTVRGIVQNASGAVTVIADAMARLELSVGSRSRDFR
>NZ_AP022618.1|WP_083031130.1|1562083_1562494_-|TIGR03667-family-PPOX-class-F420-dependent-oxidoreductase
MPIDLNAEVIQRLTDDTDGWLTTVAKSGQPVPRLVWFLLDGTDVVVYSHPTGAKVRHIGNHPRVSLNLDSDGDGGGVIVVGGVATVEPEPVDPRTDERYWAKYDELAERLGYVEMMGDFNTRIRIAVDKVWTTPVA
>NZ_AP022618.1|WP_083031129.1|1562517_1563159_+|nitroreductase-family-protein
MALELSNDELLTTTRSVRKRLDFDRPVPRELLMECLDIALQAPSGSNAQGWQWIFVDDPDIKKALADIYRSNATGYLQLAPPERGDIRDQQQVAVRDSASYLNENFEKAPVLMIPCLEGRPDGVDAGMSASYWGSLLPAVWSFMLALRARGLGSAWTTLHLIGDGERQAAELLGIPFKDYAQGGLFPIAYTKGTDFKKARRLPAEQLTHWNHW
>NZ_AP022618.1|WP_083031127.1|1563168_1563633_-|tRNA-(cytidine(34)-2'-O)-methyltransferase
MFHLLFHSPRIAPNTGNAIRMVAATGTHLHLVEPLGFDLSEPKLRRAGLDYHDLASVTVHPSLAAAWEALMPARVFAFTAHARTSFTDVAYRPTDVLMFGPEPTGLDDETLADPHISAQLRIPMLAGRRSLNLSNAAAVACYEAWRQHGFTGAV
>NZ_AP022618.1|WP_083031125.1|1563651_1564209_+|pentapeptide-repeat-containing-protein
MAEPSWTDREFTGADFRDEDLTGLCTERTVFDGCDFTGATLSESRHVGSAFRNCVFTRATLWHSSFTGCSLIGSVFGDARLRPITFDEVDLTLATLGGADLRKVDLSGCRLREASLVQADLREANLAGADLTGARTLGARLDGADLRGARVDADLWTTASLRGAKIDVAQALTYAVAHGLNVAGD

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Crispr_ID: NZ_AP022618_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022618_8

1588596-1588694

Orphan

Consensus_repeat	Method
CGCTCGCTTACTCCCGCCTCAGTCGCGAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP022618_8

>merge|NZ_AP022618|8|1588596-1588694|CRISPRCasFinder
CGCTCGCTTACTCCCGCCTCAGTCGCGACGCTGTGGTGGTTGTCGTCGACTCCTTCGGCGGGGCTCGCTGCGCTCGCTTACTCCCGCCTCAGTCGCGAC

>NZ_AP022618|8|8|1588596-1588694|CRISPRCasFinder
CGCTCGCTTACTCCCGCCTCAGTCGCGAC	GCTGTGGTGGTTGTCGTCGACTCCTTCGGCGGGGCTCGCTG
CGCTCGCTTACTCCCGCCTCAGTCGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022618.1\|WP_083031096.1\|1582010_1582793_-\|succinate-dehydrogenase-iron-sulfur-subunit	unknown	unknown	gnl\|CDD\|235652
NZ_AP022618.1\|WP_083031077.1\|1596561_1597452_+\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|211332
NZ_AP022618.1\|WP_083031089.1\|1586130_1587420_+\|thymidine-phosphorylase	unknown	unknown	gnl\|CDD\|180276
NZ_AP022618.1\|WP_083031095.1\|1582795_1584550_-\|succinate-dehydrogenase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|236185
NZ_AP022618.1\|WP_083031141.1\|1591598_1592771_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|349936
NZ_AP022618.1\|WP_083031074.1\|1598950_1599589_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NZ_AP022618.1\|WP_083031078.1\|1594828_1596565_+\|glycerol-3-phosphate-dehydrogenase/oxidase	unknown	unknown	gnl\|CDD\|223651
NZ_AP022618.1\|WP_083031099.1\|1578829_1580080_-\|D-alanyl-D-alanine-carboxypeptidase	unknown	unknown	gnl\|CDD\|224600
NZ_AP022618.1\|WP_083031098.1\|1581199_1581991_-\|3-oxo-5-alpha-steroid-4-dehydrogenase	unknown	unknown	gnl\|CDD\|178015
NZ_AP022618.1\|WP_083031090.1\|1585723_1586134_+\|cytidine-deaminase	unknown	unknown	gnl\|CDD\|180142
NZ_AP022618.1\|WP_083031081.1\|1592823_1593300_-\|gamma-glutamylcyclotransferase	unknown	unknown	gnl\|CDD\|372719
NZ_AP022618.1\|WP_083031075.1\|1598455_1598926_-\|nitroreductase-family-deazaflavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|211538
NZ_AP022618.1\|WP_083031083.1\|1590624_1591422_-\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|236183
NZ_AP022618.1\|WP_163787965.1\|1584568_1584988_-\|succinate-dehydrogenase-hydrophobic-membrane-anchor-subunit	unknown	unknown	gnl\|CDD\|239580
NZ_AP022618.1\|WP_083031143.1\|1580163_1581060_-\|SMP-30/gluconolactonase/LRE-family-protein	unknown	unknown	gnl\|CDD\|225921
NZ_AP022618.1\|WP_083031092.1\|1585035_1585470_-\|succinate-dehydrogenase,-cytochrome-b556-subunit	unknown	unknown	gnl\|CDD\|239581
NZ_AP022618.1\|WP_163787818.1\|1599545_1600391_+\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|211332
NZ_AP022618.1\|WP_083031087.1\|1587483_1588584_+\|adenosine-deaminase	unknown	unknown	gnl\|CDD\|236480
NZ_AP022618.1\|WP_083031084.1\|1589976_1590612_+\|uracil-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234653
NZ_AP022618.1\|WP_083031080.1\|1593374_1594790_+\|NAD(P)H-quinone-dehydrogenase	unknown	unknown	gnl\|CDD\|236112

Protein	Function_ID	Function_description	E-value
NZ_AP022618.1\|WP_083031096.1\|1582010_1582793_-\|succinate-dehydrogenase-iron-sulfur-subunit	gnl\|CDD\|235652	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed.	8.70106e-145
NZ_AP022618.1\|WP_083031077.1\|1596561_1597452_+\|pseudouridine-synthase	gnl\|CDD\|211332	cd02558, PSRA_1, Pseudouridine synthase, a subgroup of the RluA family. This group is comprised of bacterial proteins assigned to the RluA family of pseudouridine synthases. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. The RluA family is comprised of proteins related to Escherichia coli RluA.	3.18755e-124
NZ_AP022618.1\|WP_083031089.1\|1586130_1587420_+\|thymidine-phosphorylase	gnl\|CDD\|180276	PRK05820, deoA, thymidine phosphorylase; Reviewed.	0
NZ_AP022618.1\|WP_083031095.1\|1582795_1584550_-\|succinate-dehydrogenase-flavoprotein-subunit	gnl\|CDD\|236185	PRK08205, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed.	0
NZ_AP022618.1\|WP_083031141.1\|1591598_1592771_+\|amidohydrolase	gnl\|CDD\|349936	cd08014, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily. Peptidase M20 family, uncharacterized subfamily of uncharacterized bacterial proteins predicted as putative amidohydrolases. These are a class of zinc binding homodimeric enzymes involved in hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. Aminoacylase 1 (ACY1) breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine).	0
NZ_AP022618.1\|WP_083031074.1\|1598950_1599589_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	5.30535e-13
NZ_AP022618.1\|WP_083031078.1\|1594828_1596565_+\|glycerol-3-phosphate-dehydrogenase/oxidase	gnl\|CDD\|223651	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion].	0
NZ_AP022618.1\|WP_083031099.1\|1578829_1580080_-\|D-alanyl-D-alanine-carboxypeptidase	gnl\|CDD\|224600	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane].	1.18391e-78
NZ_AP022618.1\|WP_083031098.1\|1581199_1581991_-\|3-oxo-5-alpha-steroid-4-dehydrogenase	gnl\|CDD\|178015	PLN02392, PLN02392, probable steroid reductase DET2.	1.52082e-38
NZ_AP022618.1\|WP_083031090.1\|1585723_1586134_+\|cytidine-deaminase	gnl\|CDD\|180142	PRK05578, PRK05578, cytidine deaminase; Validated.	4.67651e-71
NZ_AP022618.1\|WP_083031081.1\|1592823_1593300_-\|gamma-glutamylcyclotransferase	gnl\|CDD\|372719	pfam13772, AIG2_2, AIG2-like family. This family is found in bacteria and metazoa.	7.40071e-31
NZ_AP022618.1\|WP_083031075.1\|1598455_1598926_-\|nitroreductase-family-deazaflavin-dependent-oxidoreductase	gnl\|CDD\|211538	TIGR00026, Hypothetical_protein_Rv1261c/MT1299/Mb1292c., deazaflavin-dependent oxidoreductase, nitroreductase family. This model represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces. Seven members are in Mycobacterium tuberculosis. Member protein Rv3547 has been characterized as a deazaflavin-dependent nitroreductase. [Unknown function, Enzymes of unknown specificity].	1.04375e-15
NZ_AP022618.1\|WP_083031083.1\|1590624_1591422_-\|purine-nucleoside-phosphorylase	gnl\|CDD\|236183	PRK08202, PRK08202, purine nucleoside phosphorylase; Provisional.	1.27552e-128
NZ_AP022618.1\|WP_163787965.1\|1584568_1584988_-\|succinate-dehydrogenase-hydrophobic-membrane-anchor-subunit	gnl\|CDD\|239580	cd03500, SQR_TypeA_SdhD_like, Succinate:quinone oxidoreductase (SQR) Type A subfamily, Succinate dehydrogenase D (SdhD)-like subunit; SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. Members of this subfamily reduce low potential quinones such as menaquinone and thermoplasmaquinone. SQR is also called succinate dehydrogenase or Complex II, and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are similar to the Thermoplasma acidophilum SQR and are classified as Type A because they contain two transmembrane subunits as well as two heme groups. Although there are no structures available for this subfamily, the presence of two hemes has been proven spectroscopically for T. acidophilum. The two membrane anchor subunits are similar to the SdhD and SdhC subunits of bacterial SQRs, which contain heme and quinone binding sites. The two-electron oxidation of succinate in the flavoprotein active site is coupled to the two-electron reduction of quinone in the membrane anchor subunits via electron transport through FAD and three iron-sulfur centers. The reversible reduction of quinone is an essential feature of respiration, allowing transfer of electrons between respiratory complexes.	2.56899e-35
NZ_AP022618.1\|WP_083031143.1\|1580163_1581060_-\|SMP-30/gluconolactonase/LRE-family-protein	gnl\|CDD\|225921	COG3386, COG3386, Gluconolactonase [Carbohydrate transport and metabolism].	7.17232e-25
NZ_AP022618.1\|WP_083031092.1\|1585035_1585470_-\|succinate-dehydrogenase,-cytochrome-b556-subunit	gnl\|CDD\|239581	cd03501, SQR_TypeA_SdhC_like, Succinate:quinone oxidoreductase (SQR) Type A subfamily, Succinate dehydrogenase C (SdhC)-like subunit; SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. Members of this subfamily reduce low potential quinones such as menaquinone and thermoplasmaquinone. SQR is also called succinate dehydrogenase or Complex II, and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are similar to the Thermoplasma acidophilum SQR and are classified as Type A because they contain two transmembrane subunits as well as two heme groups. Although there are no structures available for this subfamily, the presence of two hemes has been proven spectroscopically for T. acidophilum. The two membrane anchor subunits are similar to the SdhD and SdhC subunits of bacterial SQRs, which contain heme and quinone binding sites. The two-electron oxidation of succinate in the flavoprotein active site is coupled to the two-electron reduction of quinone in the membrane anchor subunits via electron transport through FAD and three iron-sulfur centers. The reversible reduction of quinone is an essential feature of respiration, allowing transfer of electrons between respiratory complexes.	5.67734e-43
NZ_AP022618.1\|WP_163787818.1\|1599545_1600391_+\|pseudouridine-synthase	gnl\|CDD\|211332	cd02558, PSRA_1, Pseudouridine synthase, a subgroup of the RluA family. This group is comprised of bacterial proteins assigned to the RluA family of pseudouridine synthases. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. The RluA family is comprised of proteins related to Escherichia coli RluA.	3.67292e-113
NZ_AP022618.1\|WP_083031087.1\|1587483_1588584_+\|adenosine-deaminase	gnl\|CDD\|236480	PRK09358, PRK09358, adenosine deaminase; Provisional.	3.15615e-152
NZ_AP022618.1\|WP_083031084.1\|1589976_1590612_+\|uracil-phosphoribosyltransferase	gnl\|CDD\|234653	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed.	2.35887e-93
NZ_AP022618.1\|WP_083031080.1\|1593374_1594790_+\|NAD(P)H-quinone-dehydrogenase	gnl\|CDD\|236112	PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed.	0

>NZ_AP022618.1|WP_083031087.1|1587483_1588584_+|adenosine-deaminase
MSTDLLNPPEHALIRLAPKVLLHDHLDGGLRPSTVLEIAAATGYDGLPATNPDELAAWFRTAAHSGSLVRYLEPFAHTVAVMQTADALHRVAYECVQDLAADAVVYAEVRFAPELHLDAGLSLDEVVEAVLAGFADGQRDAAADGTPILVRCLVTAMRHAARSQEIAELAIRFRHRGVVGFDIAGAEAGYPPTRHLDAFEYMRNHNGHFTIHAGEAFGLPSIHDALAFCGANRLGHGVRIVDDITVAADGSYHLGELAALVRDNRVPLELCPSSNVQTGAVPSIAEHPFDLLARLRFRVTVNTDNRLMSDTTMSDEMIRLVDAFGYGWSDLQRFTINAMKSAFLPFDQRLELIDDVIKPRYAVLAG
>NZ_AP022618.1|WP_083031089.1|1586130_1587420_+|thymidine-phosphorylase
MTDAPTVIRTKRDGGRLADAEIDWVVDAYTRGDVGDEQMAALLMAIFLRGMDAAEIARWTAAMIGSGTRFDFTDLRRDGRPLSLVDKHSTGGVGDKITIVLVPVIVACGGAVPQASGRGLGHTGGTLDKLEAIPGFSGELTLDRIRDQLTRVGAAIFAAGELAPADRKLYALRDITATVDSLPLIASSIMSKKLAEGTGSLVLDVKVGSGAFLSDPADAAALAATMVDLGAGYGVPTRALLTDMSNPLGRTAGNALEVAESLDVLAGGGPPDIVELTLALAGEMLTLAGIDGRDPADTLADGSAMDAFRAMVSAQGGDLDAGLPTATVTETVTAAGGGVMGDIDAHAVGMAVWRLGAGRTVAGQRVQAGAGIEIHRRPGEPVTAGQPLFTLHTDTPERLPAALAELDGAWSIGATRPPVRPLILGRVPR
>NZ_AP022618.1|WP_083031090.1|1585723_1586134_+|cytidine-deaminase
MTETGSGIEWKLLRDKAIEISGRAYAPYSRFPVGAAALCDDGRIVTGTNVENVSYGLGLCAECAVVCATVSGGGGRLLALAVVDADGRPLSPCGRCRQLLYEHGGPGMLIDTAAGPRPLAELLPDAFGPDDLERVR
>NZ_AP022618.1|WP_083031092.1|1585035_1585470_-|succinate-dehydrogenase,-cytochrome-b556-subunit
MTTAAPAEPAKAGPRRRRTLYRGDAGMWAWVLHRITGATIFFFLIVHVLDTAMVRVSPEVYNEVVGSYKTPLVGLMEIGLVAAVLFHAFNGVRIILIDFWSEGPRHQRKMLAAVAVIWLLVMVPALVTLGIHMAEHFHWFGMAK
>NZ_AP022618.1|WP_163787965.1|1584568_1584988_-|succinate-dehydrogenase-hydrophobic-membrane-anchor-subunit
MEKEFDRPASLDHPRAPRKPRGIPYFEKYAWLFMRFSGVALIFLVIGHLFIGLMMENGVYRVDFNYVAERWASPFWQIWDMAMLWLAIIHGANGMRTIIGDYARKNVTKFYLNSLLLLVTGFTVVLGSYVLVTFAVPVK
>NZ_AP022618.1|WP_083031095.1|1582795_1584550_-|succinate-dehydrogenase-flavoprotein-subunit
MIQEHRYDVVIVGAGGAGMRAAVEAGPRVRTAVLTKLYPTRSHTGAAQGGMCAALANVEEDNWEWHTFDTVKGGDYLADQDAVEIMCKEAIDAVYDLEKMGMPFNRTPEGRIDQRRFGGHTRDHGKAPVRRACYAADRTGHMILQTLYQNCVKHDVEFFNEFYALDLVLTETPGGPVATGIVAYELASGDIHIFHAKAIVFATGGSGRMYKTTSNAHTLTGDGLGIVFRKGLPLEDMEFHQFHPTGLAGLGILISEAVRGEGGRLLNGEGERFMERYAPTIVDLAPRDIVARSMVLEVLEGRGAGPNKDYVYIDVRHLGADVLEAKLPDITEFARTYLGVDPVTELVPVYPTCHYVMGGIPTNVAGQVLRDNTNVVPGLYAAGECACVSVHGSNRLGTNSLLDINVFGRRAGIAAAEYAASHDFVDMPAEPAAMVIDWVGDILSEHGNERVADIRSALQQSMDNNAAVFRTEETLKQALTDIHALKERYSRITVHDKGKRFNSDLLEAIELGFLLELAEVTVTGALNRKESRGGHAREDYPDRDDVNFMRHTMAYKEGDGLLADIRLDFKPVVQTRYEPKERKY
>NZ_AP022618.1|WP_083031096.1|1582010_1582793_-|succinate-dehydrogenase-iron-sulfur-subunit
MSAPVLSQPEAGDPPLPPIPDGAVMVTLKIARFNPEDPDAAGFASYRVPCLPSDRLLNLLLYVKGYLDGTLTFRRSCAHGVCGSDAMRVNGVNRLACKVLMRDLLPKNGKPLTITIEPIRGLPVEKDLVVDMEPFFDAYRAVKPFLITSGNPPTRERIQSQTDRARYDDTTKCILCACCTTSCPVFWNEGSYFGPAAIVNAHRFIFDSRDEAAAERLDILNEVDGVWRCRTTFNCTEACPRGIEVTKAIQEVKRALMFAR
>NZ_AP022618.1|WP_083031098.1|1581199_1581991_-|3-oxo-5-alpha-steroid-4-dehydrogenase
MHWYTGDTCYDTVLTAAFAFAAFVIIGGFFGQSSYGRFSSAKLGFNLNPKLGWWLMEIPATVVFAVAYLTGPARWEPTSLVLAGIWALHYANRGWFFPLAIRQVPGKRSTFNLSVVVMGMLVTAMHGYLNGALFSHDYFGRYGTDWLTDPRFLLGLAIYLCGFALLVHSESVVRNLRDKNNPGAAEYRIPFGGGFRFVTSPAYLGELTAWTGFAILTWALPGVAILLITAGNLIPRARDTQRWYKERFADYPSDRKALVPFLY
>NZ_AP022618.1|WP_083031143.1|1580163_1581060_-|SMP-30/gluconolactonase/LRE-family-protein
MPGDGPEDVVVDTAGDLWTGLVDGRIVRVHPDGATTVVADTGGRPLGLHVARDHRLLICDSLRGLLALDPATGQLRTLVTEVNGRALKFCSNVTETADGTIYFTESTSRFHFHHYQAAIIEARGTGGLYRLDPDGSVHPVVDGLYFANGLTVTADGSALVFAETQARKLSKYWLTGPDKGTVTELAVHLSGLPDNICTGPDGRIWVAMVSPIVTAAEFLAPRAPVLRKLLWRLPSRLLPTISPMVWAVAFDPDSGAPVAGIEDHRDDFGAVTGVVVAGDRLWLSSLEFPALAHCPIPG
>NZ_AP022618.1|WP_083031099.1|1578829_1580080_-|D-alanyl-D-alanine-carboxypeptidase
MGNSTTPLHSTARRAAGLAASLFLLAGPVLVPGVAAADPAPAPSCPYQVNTPPAVDASEVPAPGEDAPAPLPVPAKPVGGAALGDCGIVTAANTAPVPEDVSAEAWLVADLDTGEIIAARDPHGRHRPASIIKVLVATQAINDLNLNKPVAGTAEDAAAEGTKVGVDVGGTYTVNDLLHGLLMHSGNDAAHALAGQLGGMDAALGKLNTLASKLGARDTRVATPSGLDGPGMSTSAYDIGLFYRYAWTKPEFAQVVATRSYMFPGHSTPEAGDHPAYELENDNKLLTNYDGALGGKTGYTDDAGQTFVGAAERDGRRLVAVLLRGTRLPIAPWEQAARLLDYGFATPRGTSVGTLVDPDPSLIRPAASDAPVNQAAALVPAADATPVRVGVGVVGALVVFSLIMGARSLNRNTVKV
>NZ_AP022618.1|WP_083031084.1|1589976_1590612_+|uracil-phosphoribosyltransferase
MDVRVIDHPLAAVRLSTLRDENTDDATFRAALAELATMLIYEATRDLDRIPYPLTTPVSGTVGHRLAAAPLLVPVLRAGLGMLAPAQVLLPQSRTGFIGVARDEHTHVAHEYLVSLPEDLSGTPVLVLDPMLATGGSMTDALGRLAERGATDVTAVCVVCAPEGIAAVTAIQENSLPGLRLVTAVIDDGLNDAKFIVPGLGDAGDRQFGPR
>NZ_AP022618.1|WP_083031083.1|1590624_1591422_-|purine-nucleoside-phosphorylase
MSTDPLAVAEVAANVIAERTGFARHDVAVVLGSGWAAAADVLGPADVVADMAELPGFTAPTAAGHGGQLRSLAIAGHRVLVLLGRTHAYEGHDLSVVVHPVRAACAAGARTVVLTNAAGGLRPEYRVGAPVLIADHLNLTARSPLVGAQFVDLVDAYSPRLRELARRIDPALAEGVYAGLPGPHYETPAEIRMLRILGADLVGMSTVHETIAARAAGAEVLGVSLVTNLAAGMTGEPLSHAEVLDAGRDSAARLGELLAGVIAEL
>NZ_AP022618.1|WP_083031141.1|1591598_1592771_+|amidohydrolase
MSLADSAESWLAHNFDDVVAWRRHIHAHPELGRAETATTAFVADKLTEAGLTPQLLPGGTGLICDIGPQFRTRIALRADMDALPMAEDTGLPFSSTVPGVAHACGHDAHTAILLGTGLALASVPDLPVAVRLIFQPAEELMPGGALDVVASGALAGVSRIFALHCDPRLAAGKVAITAGPITSAADWLTVTLTSPGGHTSRPHLTGDLVYGLGTLITGLPGVLSRRIDPRDSTVMVWGAVNAGQAANAIPQTGSLSGTVRTASPTAWAHMEELVSEIVAALLAPLNLEHRLHYTRGVPPVVNDEISTRIFTHAIEAIGPDALAETRQSGGGEDFSWYLEEIPGAMARLGVWSGVGPQLDLHQPNFDIDERALGIGVRVLANLVEQSAGFD
>NZ_AP022618.1|WP_083031081.1|1592823_1593300_-|gamma-glutamylcyclotransferase
MPLYAAYGSNMSPDQMRERAPHSPMAGTGWLRGWRLTFGGEDIGWEGALATVVQDPNSQVFVVLFDVTAEDEKSLDRWEGSELGIHKKIRCRVHRESSDTTTDPVLAWLYVVDAWEGGLPSARYLGVMADAAEVAGAPADYVHDIRTRAAKNVGPGSS
>NZ_AP022618.1|WP_083031080.1|1593374_1594790_+|NAD(P)H-quinone-dehydrogenase
MLTRIVIIGGGPAGYEAALVAAARGPEQVQVTVVDSDGMGGACVLWDCVPSKAFIASTGVRTELRRAAGLGYDIGIEDAPITLPQINRRALTLAVSQSVDIGTQLTNAGVTIVRGRGELVDSIPGMAHHRVKVTTAEGQSGVLKADVVLIATGASPRILPAALPDGDRILTWRQLYSLRDLPEHLVIVGSGVTGAEFCNAYTELGVDVTVVASRDLILPHEDADAAAALEQVFAERGVTLVKNGRADSVVRTESGVRVTLSDGRVVDGSHALMSIGSTPNTAGLGLDRVGIELAASGHIPVDRVSRTVAAGIYAAGDCTGLLPLASVAAMQGRIAMYHALGEGVSPIRLRTVATATFTRPEIAAVGIPQRSIDDGSVPARTIMLPLTTNARAKMSLLRHGFIKIFCRPATGVVIGGVVVAPIASELILPIALAVQNRISVADLAQTLSVYPSLSGSIIEAARRLMAHDDLD
>NZ_AP022618.1|WP_083031078.1|1594828_1596565_+|glycerol-3-phosphate-dehydrogenase/oxidase
MTDPLPSSVLDPAQRKQNWDRLTGEQFDVIVIGGGVVGAGAALDAATRGLKVALVEARDLASGTSSRSSKMFHGGLRYLEQLEFGLVREALHERELSLTTLAPHLVKPLPFLFPLTQRWWERPYVAAGIFLYDQLGGAKSVPAQKHLFRAGALRLAPGLKRSSLVGGIRYFDTVVDDARHTMTVARTAAHYGAVVRTSTQVIGMLREGDRVVGVRVRDSEDGAVTEARGHVVINATGVWTDEIQALSHQRGRFRVRASKGVHIVVPRDRIVSEVAIILRTEKSVLFVIPWGTHWIIGTTDTDWNLDLAHPAATKADIDYILGHVNTVLATPLTHDDIDGVYAGLRPLLAGESDETSKLSREHAVAVSAPGLVAIAGGKYTTYRVMAADAIDMAAQFVPTRVAPSITEKVPLLGADGYFALINQTQHVGEPFGLHPYRVRHLLDRYGALISDVLELAAGRPELLEPITEAPVYLKVEAAYAAAAEGALHLEDILARRMRIAIEYPHRGIDCAREVAEIVAPILGWTDADVDREVATYLARVEAEVLSQTQPDDESADALRVAAPEARAEILEPVPLPNS
>NZ_AP022618.1|WP_083031077.1|1596561_1597452_+|pseudouridine-synthase
MTRRRRVAPLPDRDGVSAARVRLHGGCVYDELTRRFGGEAGAKVLSGEVLSSDGTVIAADTVLPEGEVVYLYRELPDEVEVPFDLPVLHRDADILVVDKPHFLATMPRGSHVVQTALVRLRRELDLPELSPAHRLDRLTAGVLLFTVRPEIRGVYQTLFARGEVRKVYLARAGVDPAVDFPLTLRSRIIKERSRLQAFEVPGEPNAETFAEHLGDGLYRLTPRTGQTHQLRVHMSSLGLPILGDPLYPEVIDVAPDDFSTPLQLLSRTLEFDDPLTGERRRFVSGRVLDGASPTSA
>NZ_AP022618.1|WP_083031075.1|1598455_1598926_-|nitroreductase-family-deazaflavin-dependent-oxidoreductase
MTAIGDLGARLLRNRRLVRAPIWLFRARAGALLGSRMLMLEHVGRTTGQLRYVVLEVVDHPSVDTYVVASGFGTKAQWFRNICANPNARVWVKSHRPAAAVARVLDQPAADRALDTFRTRHPRYWDQFRHVVEETLGQPIGDTDIPLPMVELRLER
>NZ_AP022618.1|WP_083031074.1|1598950_1599589_-|TetR/AcrR-family-transcriptional-regulator
MRLPLGDDRTARARIRDEALRLFAERGTDAVTMRDIAAAATVSPALLVRHYGSKDGLVAAVDDHVVTVLEVVIAAITRQPDGVSPAAVPALLEALGAHLPSDSPVPAYLSRLLAGSSPVGSAVFARLFEISRSGLDAMVEAGVAAPGQDTAVRSAVLLANDLAMLTLRPRLTEVLGFDPLSTDGMKRWAAEVFTIYSDGLGSADKPAEDVRG
>NZ_AP022618.1|WP_163787818.1|1599545_1600391_+|pseudouridine-synthase
MRARAVRSSPRGKRMFTNVNICLVICNCADWGRRGDRGGYPVAGGEHVFLYRDLPDEVEVPGDIPIIYRDEKILVVDKPHFLATVPRGSHVVQTAVVRLRRELYLPELSPAHRLNRLTAGVLLFTVRPEVRGAYQTLFARGEVRKVYLARAGVDSSLVFPLTLRSRIIKDRSRLPAFEVSGEPNTETFVEHLGDGLYRLTPRTGRTHQLRVHMASLGLPIHGDPLYPAVTDVTPDDFSTPLQLLARTLEFDDPLTGKCRRFLSRRSSGEGMSSAGKGWWSR

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Crispr_ID: NZ_AP022618_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022618_9

1888862-1888958

Orphan

Consensus_repeat	Method
AAGCCGCCGAGGGCCTCGAAAAATTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP022618_9

>merge|NZ_AP022618|9|1888862-1888958|CRISPRCasFinder
AAGCCGCCGAGGGCCTCGAAAAATTTGGTCATGCGTGGCCTCCCGAAAACATGCGGTGCCCGGTGACCCGAAAGCCGCCGAGGGCCTCGAAAAATTT

>NZ_AP022618|9|9|1888862-1888958|CRISPRCasFinder
AAGCCGCCGAGGGCCTCGAAAAATTT	GGTCATGCGTGGCCTCCCGAAAACATGCGGTGCCCGGTGACCCGA
AAGCCGCCGAGGGCCTCGAAAAATTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022618.1\|WP_083032648.1\|1883821_1885417_-\|NADH-quinone-oxidoreductase-subunit-M	unknown	unknown	gnl\|CDD\|235622
NZ_AP022618.1\|WP_110810929.1\|1879558_1881214_+\|DUF3696-domain-containing-protein	unknown	unknown	gnl\|CDD\|227274
NZ_AP022618.1\|WP_083032651.1\|1887614_1888334_-\|NADH-quinone-oxidoreductase-subunit-J	unknown	unknown	gnl\|CDD\|235844
NZ_AP022618.1\|WP_083029440.1\|1895857_1896532_-\|NADH-quinone-oxidoreductase-subunit-C	unknown	unknown	gnl\|CDD\|181115
NZ_AP022618.1\|WP_083029443.1\|1897624_1898014_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022618.1\|WP_163787838.1\|1892545_1893859_-\|NADH-quinone-oxidoreductase-subunit-NuoF	unknown	unknown	gnl\|CDD\|131014
NZ_AP022618.1\|WP_083032641.1\|1876441_1876768_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022618.1\|WP_083032647.1\|1882238_1883825_-\|NADH-quinone-oxidoreductase-subunit-NuoN	unknown	unknown	gnl\|CDD\|235603
NZ_AP022618.1\|WP_083029439.1\|1894562_1895858_-\|NADH-quinone-oxidoreductase-subunit-D	unknown	unknown	gnl\|CDD\|180385
NZ_AP022618.1\|WP_083032644.1\|1878227_1879370_+\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|368185
NZ_AP022618.1\|WP_163787837.1\|1890176_1892549_-\|NADH-quinone-oxidoreductase-subunit-G	unknown	unknown	gnl\|CDD\|236118
NZ_AP022618.1\|WP_083029444.1\|1898109_1898766_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022618.1\|WP_083029438.1\|1893855_1894566_-\|NADH-quinone-oxidoreductase-subunit-NuoE	unknown	unknown	gnl\|CDD\|181024
NZ_AP022618.1\|WP_083029442.1\|1897073_1897436_-\|NADH-quinone-oxidoreductase-subunit-A	unknown	unknown	gnl\|CDD\|181171
NZ_AP022618.1\|WP_163787836.1\|1875197_1876445_-\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|238624
NZ_AP022618.1\|WP_083029441.1\|1896528_1897083_-\|NADH-quinone-oxidoreductase-subunit-B	unknown	unknown	gnl\|CDD\|235797
NZ_AP022618.1\|WP_083029445.1\|1898779_1899685_-\|hydroxymethylglutaryl-CoA-lyase	unknown	unknown	gnl\|CDD\|163676
NZ_AP022618.1\|WP_083032650.1\|1887318_1887618_-\|NADH-quinone-oxidoreductase-subunit-NuoK	unknown	unknown	gnl\|CDD\|180218
NZ_AP022618.1\|WP_083032658.1\|1885413_1887291_-\|NADH-quinone-oxidoreductase-subunit-L	unknown	unknown	gnl\|CDD\|235836
NZ_AP022618.1\|WP_083032642.1\|1876772_1878038_-\|aromatic-ring-hydroxylating-dioxygenase-subunit-alpha	unknown	unknown	gnl\|CDD\|239551

Protein	Function_ID	Function_description	E-value
NZ_AP022618.1\|WP_083032648.1\|1883821_1885417_-\|NADH-quinone-oxidoreductase-subunit-M	gnl\|CDD\|235622	PRK05846, PRK05846, NADH:ubiquinone oxidoreductase subunit M; Reviewed.	0
NZ_AP022618.1\|WP_110810929.1\|1879558_1881214_+\|DUF3696-domain-containing-protein	gnl\|CDD\|227274	COG4938, COG4938, Uncharacterized conserved protein [Function unknown].	8.28823e-23
NZ_AP022618.1\|WP_083032651.1\|1887614_1888334_-\|NADH-quinone-oxidoreductase-subunit-J	gnl\|CDD\|235844	PRK06638, PRK06638, NADH-quinone oxidoreductase subunit J.	1.11241e-61
NZ_AP022618.1\|WP_083029440.1\|1895857_1896532_-\|NADH-quinone-oxidoreductase-subunit-C	gnl\|CDD\|181115	PRK07785, PRK07785, NADH dehydrogenase subunit C; Provisional.	2.97239e-150
NZ_AP022618.1\|WP_163787838.1\|1892545_1893859_-\|NADH-quinone-oxidoreductase-subunit-NuoF	gnl\|CDD\|131014	TIGR01959, NADH-quinone_oxidoreductase_subunit_F, NADH-quinone oxidoreductase, F subunit. This model describes the F chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. [Energy metabolism, Electron transport].	0
NZ_AP022618.1\|WP_083032647.1\|1882238_1883825_-\|NADH-quinone-oxidoreductase-subunit-NuoN	gnl\|CDD\|235603	PRK05777, PRK05777, NADH-quinone oxidoreductase subunit NuoN.	5.19407e-165
NZ_AP022618.1\|WP_083029439.1\|1894562_1895858_-\|NADH-quinone-oxidoreductase-subunit-D	gnl\|CDD\|180385	PRK06075, PRK06075, NADH-quinone oxidoreductase subunit D.	0
NZ_AP022618.1\|WP_083032644.1\|1878227_1879370_+\|amidohydrolase-family-protein	gnl\|CDD\|368185	pfam04909, Amidohydro_2, Amidohydrolase. These proteins are amidohydrolases that are related to pfam01979.	3.12812e-18
NZ_AP022618.1\|WP_163787837.1\|1890176_1892549_-\|NADH-quinone-oxidoreductase-subunit-G	gnl\|CDD\|236118	PRK07860, PRK07860, NADH dehydrogenase subunit G; Validated.	0
NZ_AP022618.1\|WP_083029438.1\|1893855_1894566_-\|NADH-quinone-oxidoreductase-subunit-NuoE	gnl\|CDD\|181024	PRK07539, PRK07539, NADH-quinone oxidoreductase subunit NuoE.	3.63027e-85
NZ_AP022618.1\|WP_083029442.1\|1897073_1897436_-\|NADH-quinone-oxidoreductase-subunit-A	gnl\|CDD\|181171	PRK07928, PRK07928, NADH dehydrogenase subunit A; Validated.	2.60751e-70
NZ_AP022618.1\|WP_163787836.1\|1875197_1876445_-\|amidohydrolase-family-protein	gnl\|CDD\|238624	cd01299, Met_dep_hydrolase_A, Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.	7.6158e-101
NZ_AP022618.1\|WP_083029441.1\|1896528_1897083_-\|NADH-quinone-oxidoreductase-subunit-B	gnl\|CDD\|235797	PRK06411, PRK06411, NADH-quinone oxidoreductase subunit NuoB.	1.422e-99
NZ_AP022618.1\|WP_083029445.1\|1898779_1899685_-\|hydroxymethylglutaryl-CoA-lyase	gnl\|CDD\|163676	cd07938, DRE_TIM_HMGL, 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".	1.57225e-122
NZ_AP022618.1\|WP_083032650.1\|1887318_1887618_-\|NADH-quinone-oxidoreductase-subunit-NuoK	gnl\|CDD\|180218	PRK05715, PRK05715, NADH-quinone oxidoreductase subunit NuoK.	3.48038e-44
NZ_AP022618.1\|WP_083032658.1\|1885413_1887291_-\|NADH-quinone-oxidoreductase-subunit-L	gnl\|CDD\|235836	PRK06590, PRK06590, NADH:ubiquinone oxidoreductase subunit L; Reviewed.	0
NZ_AP022618.1\|WP_083032642.1\|1876772_1878038_-\|aromatic-ring-hydroxylating-dioxygenase-subunit-alpha	gnl\|CDD\|239551	cd03469, Rieske_RO_Alpha_N, Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The oxygenase component may contain alpha and beta subunits, with the beta subunit having a purely structural function. Some oxygenase components contain only an alpha subunit. The oxygenase alpha subunit has two domains, an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from the reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Reduced pyridine nucleotide is used as the initial source of two electrons for dioxygen activation.	7.87422e-45

>NZ_AP022618.1|WP_083032651.1|1887614_1888334_-|NADH-quinone-oxidoreductase-subunit-J
MSGEQVAFWVLGFVAVIGAIGVVSARKAVYSALFLAATMIALALLYVAQGALFLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLSETLRGQRFTAVATGLGFGVLLIAGIGTAATPMPISLEKANAGGNVEGLAALIFTRYLWAFEVTSALLITAAIGAMVLAHRERLVARLTQRQLAAERFAPGGRATPLPNPGVFARANAVDVAALRPDGSPEPSSVNTLLVPRSGAPARGQEPSS
>NZ_AP022618.1|WP_083032650.1|1887318_1887618_-|NADH-quinone-oxidoreductase-subunit-NuoK
MNPDNYLYLSALLFTIGAAGFLLRRSAIVMFMCVELMLNAANLAFVTFARVHGQLDGQVVAFFTMVVAACEVVIGLAIIMTIFRNRHSTDVDDNHLLRH
>NZ_AP022618.1|WP_083032658.1|1885413_1887291_-|NADH-quinone-oxidoreductase-subunit-L
MTTLWWIPIAAPLAGAAVLLLGGRRTDRWGHLLATAAVSASFAAAVVGFVRMLGRDTAHRAVDGTLFSWVPTAGLHIDFGLRADQLSVCFVLLITGVGALIHVYSIGYMAHDPDRRRFFAYLNLFVAAMLLLVLADNYFGLYVGWEGVGLASYLLIGFWSQKPSAAAAAKKAFVVNRVGDIGLVLGIGWMFAVTGTVSFAGVFAVAPDASQSALTGIGLLLLLAACGKSAQVPLQSWLGDAMEGPTPVSALIHAATMVTAGVYLIVRSGPIFNTAPAAQTAVVTVGAVTLLFGAVIGCAKDDIKKALAASTMSQIGYMVLAAGLGPAGYAVAILHLLTHGFFKAGLFLGAGSVMHAMNDETDIRRFGGLRTVLPITFVTFGIGYLAIIGVPPFAGFFSKDAIIESAFAAGGVRGLVLGTAALVGAGITAFYMTRVMLLTFFGRPRWDEDAHPHESPPVMTTPMIVLALGSVGAGAALAGGRLVSWLEPVVGSHHEHPVLPGWAMTIIILAVVFAGAWAGWRMYAVERVDRSAPHDVSALTRAARRDLYGDAVNEAVFMRPGRGLATGVAVADNRVVDGAARLTAAAVSLASGLLRRAETGYVRSYALSMLVGTVAVAGLIWVVGR
>NZ_AP022618.1|WP_083032648.1|1883821_1885417_-|NADH-quinone-oxidoreductase-subunit-M
MTTTPWLTLLWAVPMIGAAVVIGLPRSAAHLVRPIALTISLAVLWISVVLAVGFDPAGAQYQFVEDHPWIPSFGTGYLLGVDGIALALVLLTTVLVPLLLLAGWRDTPDETELSGRAPHAYVALFLAVESMVLIALVSLDILLFYVFFEAMLIPLYFLIGGFGAGAKPARSAAAVRFLLYNLLGGLVMLAAVIGLYVVTATDSSFAAGTFDLRAIVGVVGSAGLAANPVVLHLLFLGFFCAFAVKAPLWPLHRWLPDAAVESTPATAVLMMAVVDKVGTFGMLRYCLQLFPDSSILFRPLVITLAVIGIIYGALAAIGQRDIMRLISYTSISHFGFIILGIFVMTSVGQSGSALYMVNHGLSTAALFLIAGFLVSQLGTRAIADYGGVAKVAPVLAGTFLVAGLATLSLPGLAPFVSEFLVLVGTFTRYPVAAAFAATALVLSAVYVLWLYQRVMTGPVRDGSNRLRDLRGRELLVVTPLIALLIGLGCYPKPVLDVIDPAVGHTLSIMGVSDPSPSAVSPRTAQGPVRHP
>NZ_AP022618.1|WP_083032647.1|1882238_1883825_-|NADH-quinone-oxidoreductase-subunit-NuoN
MSAALSDPTVLPTPDVAYRLLSPMLIVFGAAVAGVLIEAFAPRRHRFAAQLTLALTASAASLAMLVVSARGVGAQSLVGGAVALDRPALFCQGTIVVIGVLGLLLIAERAQPGDGGGHGLDAFTPQGSAVPGSVAEKQAAAAGVAQTEVFPLTLFSIGGMMLFAAANDLLTLFIGLEVMSLPLYILAGLARRRRLASQEAALKYFLLGAFSSALLLFGVALIYGFAGTLSVPGIGAAIAGHRDDGSLSLVLIGSGLLLVGLLFKVGAVPFGSWVPDVYQGAPTAVTAFMAAAVKIAGFGALLRICYVALPGLADSWRPALWAVAILTMVVATVAAVTQNDVKRLLAYSAVSHTGFILTGVIALNDAGVAATLFYLFAYGFSTLGAFAVLTLVRDGDGDEATSLDRWAGLGRRYPVLGVVFSLFLLAFAGIPLTSGFVAKFAVFKAAASGGAMPLVVVGVLASAVAAYFYVRVIMLMFFTDTPENPPVLVRPSWTTAATVALTAGITFALGALPQPLLDLANSAIQFVR
>NZ_AP022618.1|WP_110810929.1|1879558_1881214_+|DUF3696-domain-containing-protein
MTEWGVSNFKALEYATLPLVNLDVILGPNSSGKSSLLQSLLLLAQSTEDEIILNGPLVRLGDPSDVIRRGNDGLTISYMARGKNASTDEVDDVLFEIILSKFGTTLAVSEFIAVDQVSGSVVIHATSERVPSSAKDSICDRRAHENLLRITLIDGERAPSSTFIVFSGFIPTAIAFRRTRKDILTVLKRSARNREDLYQSERAFDTFFHILEWLSQSKASVPEKFAQLLPSRAVSSALEGMLNLPSSEMRELLECFVNANFKDVDWVRAQTYGYQDPYSPAARIFPPLGSRHRRAASVLSFGAEALRTFQGSIRYLGPLREEPQVVSPTGARYRALPAGIKGEYTADLLARSKDQVVKYHDWNNRSKTEPLPLALTRWVAHLGLGDEVTVEDQGKLGRGLRMHVNGVERDLTTIGVGASQLLPVLAVILTASSGNVILLEQPELHLHPLVQSRLADFLLYARADVKLVVESHSEYLVTRIRRRVVENPGLLDRVAVLFAEQHKGVTELRRLYLDRLGNFSDWPIGFFDTQDSEAAELAQAVRNVLCAENGG
>NZ_AP022618.1|WP_083032644.1|1878227_1879370_+|amidohydrolase-family-protein
MTITASERKPAAERIAVRCVDSDVHPMPKRGQLVEYLPEPWRTKYWGSHTYGELIYYDAPDYAHSYAMRLDTFPSDGEFACSDPDLAFKQLIMEAGSDIAILEPGAYPARLPEADHAMSQALNSWQANHWLDSHNNWHERWRGSICVSIEAPAAAAAEIEKWAGHPYMAQILIKAERRPSWGDPCYDPVWAAATKHDIVVSCHLSRSHHEELPIPPVGFPSYNHDFMCSYSLLAANQVMSLIFDGVFDRFPTLRIVFVEHAFTWILPLMWRMDAIYEARKSWMDIKRKPSEYVKEHIKFTTQPLDYPEDKTELTRAFEWMECEKILLFSSDYPHWTFDDPRWLVKHLPEHAREAVMFRNGIETYHLPDTVPALEGQVRVF
>NZ_AP022618.1|WP_083032642.1|1876772_1878038_-|aromatic-ring-hydroxylating-dioxygenase-subunit-alpha
MPRFPKPAEGSWTEHYPALGTGPVSYEDSINPEIYELERKAIFKRAWLNVGRVELIPRKGSYFTKELKVVNTSIIVVRTKAGEIKAFHNICRHRGNKLVWNDIPTEETSGVCRQFTCKYHAWRFDLDGNLTFVQQEGEFFDLDKNKYGLVPVHCEVWEGFIFVNFAAEPEQSLAEFLGPMVTNLQGYPFDKLTSRFTYRAEVNANWKLYMDAFQEFYHAPILHANQSPTAYSKAAAEAGFEAPHYRLDGPHRLVSTSGVRVWEMSAEMRKPIEDICRSGLFGPWDSPDLGPMPDGLNPAKCDPWGLDSFQLFPNFVILFWGQGWYLTYHYWPTSYRSHIFECTLYFPAPRTARERVAQELAAQSFKEYGLQDANTLEATQSSLETRVVGEFLYCDQEILLRHLHTETANWIADYQTKTAGV
>NZ_AP022618.1|WP_083032641.1|1876441_1876768_-|hypothetical-protein
MTLLPPEFADLEPFADWALPDEAARYAKRLGSTMTQMQAFYDAITPRAEEALSYCDKFPLDDMPADVVNLMHLLYSMITVSFPVECWKQPRVPDSGATSLDCVYEPAP
>NZ_AP022618.1|WP_163787836.1|1875197_1876445_-|amidohydrolase-family-protein
MTEPVTVLKAARWADVVTGEIHAPAVVVVTGNVITAVNPAQPPAEATVIDLGDVTLLPGLMDMELNLLIGGPGNPDGLPTPMHGVQDDPAYRTLRGAVNARTTLEAGFTTVRNLGLMVKTGGYLLDVALQRAIDAGWHVGPRIYPAGHAITPYGGHLDPTVFQRLAPGIMPLSVAEGIANGVPDVIAAVRYQIRHGAKLIKVSASGGVMSHSTAPGAQQFSDAELAAIADEAHRAGVKVAAHAVGDAAVRACIRAGIDCIEHGFLATEDTLAMMVEHDTFLVSTTYLTDAMAIDRIAPELRKKALEVFPRAKTMLPKAIDMGVRIACGTDAPAIPHGQNAKELCALVERGMTPMQAIRAATVTAAELVDAADELGQLATGYLADIIAVPGDPSVDIGRTLDVRFVMKDGQVYKQS
>NZ_AP022618.1|WP_163787837.1|1890176_1892549_-|NADH-quinone-oxidoreductase-subunit-G
MTAEQTTGAPQAVDLVTLTIDDQQVSVPKGTLVIRAAEMIGVVIPRFCDHPLLDPVGACRQCLVEVEGQRKPLASCTTTVTEGMVVRTQQTSPAADKAQHGIMEFLLINHPLDCPVCDKGGECPLQNQAMAHGRTETRFTDVKRTYPKPIHLSAEILLDRERCVLCARCTRFSEQIAGDHFIELLERGALQQVGIADGEPLDSYFAGNTIQICPVGALTSTDYRFRARPFDLVSTPSVCEHCAGGCAQRTDHRRGTVMRRLAGDDPEVNEEWNCDKGRFAFRYPSADDRITTPLVRDGDGLRPASWPEALAVAAAGLAPAIGRTGVLVGGRATLADAYGYAKFARTVLRSNDLDFRARAHSAEETDFLTGCVAGRYDGLTYAQLQDAPVVVLAGFEPEEESPIVFLRLRKAVRTRGQQVITIAPLLSRGAAKLNARLIPTPPGDEAAALRILAGQLRPGSVILLGERLATAAGAFSAAVALAEATGATLAWIPRRAGERGALEAGCLPTLLPGGRPVADDTARAQTAAVWGAAALPEHPGRDTTAMLAAATAGELGALVVGGVEVADLPDPHAARAALAACGFLVSLELRRSEVTAAADVVLPVAAVTEKSGAFLNWEARWRPFGPVFNTGANADLRVLSMLAEYLGADLGLRQPADVTAELTALGPWSGPFAAAPNASGPGSLLAGPGEAVLAGWRMLLDSGRGQDGDAELAATARPTVLHLSAATAAGIGARDGDRVAVATERGALALPLVITEMPDAVVWVPLNSGVSVADRLGVGPGAVVRIGREP
>NZ_AP022618.1|WP_163787838.1|1892545_1893859_-|NADH-quinone-oxidoreductase-subunit-NuoF
MSTPLTPVLSRFWDADSAWTLQTYERHHGYRALRKALAMTPDEVINLVKESGLRGRGGAGFPTGTKWSFIPQNEPNPKPHYLVINADESEPGTCKDIPLLLTTPHFLVEGAIIAAYAIGARHAFVYVRGEVVPVLRRLQAAVAEAYAAGYLGRNILGSGVDVDLVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYACPTVVNNVESIASVPPVLLGGTDWFRSMGTEKSPGFTLYSLSGHVNRPGQYEAPLGITLRELLDYAGGVRTGHTLKFWTPGGSSTPLLTPEHLDVPLDYEGMASVGSMLGTKALQIFDETTCVVRAVRRWTQFYAHESCGKCTPCREGTYWLAQIYQRLETGRGEPDDLDKLDEIADAILGKAFCALGDGAASPIMSSLNWFRAEYEQHLSGGCPFDPVASMLVAPEGVPQ
>NZ_AP022618.1|WP_083029438.1|1893855_1894566_-|NADH-quinone-oxidoreductase-subunit-NuoE
MNPIDLPLGRPSEPVPRIAGPDSFPDDVAAGLAADAATIIARYPQPRSALLPLLHLAQSVDGYLTNAGIRFCAEQLGLTDAEVTAVATFYSMYRRTPTGRYLVGVCTNTLCAIMGGDAILDTLQDHLGIEAGETTPDGAVTLEHIECNAACDYAPVVMVNWEFFDNQSPSGARDLVDDLRAGHPVVPTRGAPLCPFTQTARTLAGLPDPRPDTGPLFTGDATLAGLQVAREQQGRP
>NZ_AP022618.1|WP_083029439.1|1894562_1895858_-|NADH-quinone-oxidoreductase-subunit-D
MTETIIGVAGSDWDDVVAAARAGVAPGERIVVNMGPQHPSTHGVLRLILEIDGETVTEARCGIGYLHTGIEKNLEYRTWTQGVTFVTRMDYLSPFFNETVYCLGVEKLLGITDDIPDRASVIRVMLMELNRISSHLVALATGGMELGAMSAMFFGFREREEILTVFEAITGLRMNHAYIRPGGLAADLPDDGVARVQRLLDILPGRLAEFERLLRENYIWKARTVDVGYLDLTGCMALGITGPVLRATGLPHDLRKAQPYCGYEDYDFTVITGSNCDCYDRFVIRVEEMNESLKIVRQCLDRLEPGPVMIDDKKLAWPADLELGPDGLGNSPAHIARIMGTSMEGLIHHFKLVTEGFRVPAGQCYVAVESPRGELGVQMVSDGGTRPYRVHYRDPSFTNLQAVAAMGEGGMVADLISAVASIDPVMGGVDR
>NZ_AP022618.1|WP_083029440.1|1895857_1896532_-|NADH-quinone-oxidoreductase-subunit-C
MSETDDAGPEVIGVRRGMFGATGTGDTSGYGRLVRTVALPGGSPRPYGGYFDAVVDRLAELLGDGFDDAVVRVVVHRDQLTLDIERTRLPLVARLLRDDEALRFEFCAGVSGVHYPGDTGRELHAVYPLMSITHNRRIQLEVACPDADPHVPSLFSVYPTTDWHERETFDFFGIVFDGHPGLTRIEMPDDWEGHPQRKDYPLGGIPVEYHGAQIPPPDERRAYT
>NZ_AP022618.1|WP_083029441.1|1896528_1897083_-|NADH-quinone-oxidoreductase-subunit-B
MGLEEALPGGILLTTVEKVAGFVRKGSLWPATFGLACCAIEMMATAGPRFDIARFGMERFSATPRQADLMIVAGRVSQKMAPVLRQVYDQMAEPKWVLAMGVCASSGGVFNNYAIVQGVDHVVPVDIYLPGCPPRPEMLLNAILTLHAKIAEMPLGVHRDQVIAAAEAAALNSPTTLELKGLLR
>NZ_AP022618.1|WP_083029442.1|1897073_1897436_-|NADH-quinone-oxidoreductase-subunit-A
MALYTPILILGAIAALFAVGSVGIALLIGPRRYNRAKLEAYECGIEPVEPAGHTGQRFPIKYYLTAMLFIVFDIEIVFLYPWAVAFDRMGIFALVEMMLFMATVFVAYAYVWRRGGLEWD
>NZ_AP022618.1|WP_083029443.1|1897624_1898014_-|hypothetical-protein
MPDTALRVLVYSDNARTREQVLLALGRRIHPDLPELDYLEVATAPVVIQTLDAGGVDLAILDGEATPAGGMGIAKQLKDEIADCPPILVLTGRRDDAWLARWSRAEAAVAHPIDPMVLADTVSDLLRSR
>NZ_AP022618.1|WP_083029444.1|1898109_1898766_+|hypothetical-protein
MHRFSGLAAAGLLIGGLALAGCSREVGGDGVAESPGPSGTTSTTTEADKPQDPAVAGGCAAATTSMLTLQPASSGQPVLAIPQPAGWERNTTLDSQIVRGVIVNQSMRANDFTPNAVVTASQGPQGIDSEQKVIDAELTGLNQHGMTVETAEAGVVCGHASMRVGYTLEGRPVNAVIVGVRNGDTYYSAVVTMQTADPTNADYVRDMNTILGGFQVWF
>NZ_AP022618.1|WP_083029445.1|1898779_1899685_-|hydroxymethylglutaryl-CoA-lyase
MTLPRRVDIREVGLRDGLQLEDPLPLSAKLELLDALVATGVREIEATAFVSPSKVPALADAAELAAALARFDTVEFSALVAGPGGARRAVAAGIGSIEYVVSAADGHSRANVGRDTAEATAAIADIVAIAHDGGARLEVIIATAWDCPFDGPTPARRVLDIVAGAVAAGADRIALADTIGTTTPGRVTALIAAVRPLIGQLPLGAHFHNTRGAGLASAYAAVLAGVTRLDASVGGLGGCPFAPGATGNIATEDLVYLLRDCGVDTGIDLDAAIAAAGLAQRLVGHELPSALLRAGDRWLGS

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Crispr_ID: NZ_AP022618_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022618_10

2040028-2040117

Orphan

Consensus_repeat	Method
GCCCGAAGGGGATCGGGACGGCGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP022618_10

>merge|NZ_AP022618|10|2040028-2040117|CRISPRCasFinder
GCCCGAAGGGGATCGGGACGGCGAAGTGATGGGTGACCACAATGCTTGGTCCCGCGGTGGGATGAGCCCGAAGGGGATCGGGACGGCGAA

>NZ_AP022618|10|10|2040028-2040117|CRISPRCasFinder
GCCCGAAGGGGATCGGGACGGCGAA	GTGATGGGTGACCACAATGCTTGGTCCCGCGGTGGGATGA
GCCCGAAGGGGATCGGGACGGCGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022618.1\|WP_083029891.1\|2037072_2037453_-\|PH-domain-containing-protein	unknown	unknown	gnl\|CDD\|371225
NZ_AP022618.1\|WP_083029882.1\|2049058_2049673_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_AP022618.1\|WP_083029894.1\|2033361_2034873_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB	unknown	unknown	gnl\|CDD\|235489
NZ_AP022618.1\|WP_083029884.1\|2045411_2047136_+\|DUF3556-domain-containing-protein	unknown	unknown	gnl\|CDD\|371888
NZ_AP022618.1\|WP_110810764.1\|2036103_2036961_+\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
NZ_AP022618.1\|WP_083029893.1\|2034877_2036008_-\|PQQ-dependent-sugar-dehydrogenase	unknown	unknown	gnl\|CDD\|225044
NZ_AP022618.1\|WP_083029897.1\|2030926_2032414_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	unknown	unknown	gnl\|CDD\|234572
NZ_AP022618.1\|WP_083029888.1\|2040185_2041199_+\|ketol-acid-reductoisomerase	unknown	unknown	gnl\|CDD\|235491
NZ_AP022618.1\|WP_083029885.1\|2044331_2045342_+\|3-isopropylmalate-dehydrogenase	unknown	unknown	gnl\|CDD\|179579
NZ_AP022618.1\|WP_083029886.1\|2042748_2044332_+\|phosphoglycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|237436
NZ_AP022618.1\|WP_083029896.1\|2032431_2033079_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022618.1\|WP_083029881.1\|2049756_2050959_+\|DUF2236-domain-containing-protein	unknown	unknown	gnl\|CDD\|378343
NZ_AP022618.1\|WP_110810769.1\|2037718_2039524_+\|acetolactate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|236098
NZ_AP022618.1\|WP_083029914.1\|2030630_2030930_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	unknown	unknown	gnl\|CDD\|178810
NZ_AP022618.1\|WP_083029883.1\|2047249_2048998_-\|ubiquinone-dependent-pyruvate-dehydrogenase	unknown	unknown	gnl\|CDD\|181661
NZ_AP022618.1\|WP_083029895.1\|2033170_2033365_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022618.1\|WP_083029887.1\|2041253_2042678_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224154
NZ_AP022618.1\|WP_083029551.1\|2029458_2029980_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022618.1\|WP_083029879.1\|2052224_2053496_-\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|367155
NZ_AP022618.1\|WP_083029880.1\|2051017_2052208_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341028

Protein	Function_ID	Function_description	E-value
NZ_AP022618.1\|WP_083029891.1\|2037072_2037453_-\|PH-domain-containing-protein	gnl\|CDD\|371225	pfam10756, bPH_6, Bacterial PH domain. This domain has a bacterial type PH domain structure. This domain was previously known as DUF2581. This family is conserved in the Actinomycetales. Although several members are annotated as RbiX homologs, RbiX being a putative regulator of riboflavin biosynthesis, the function could not be confirmed.	1.40237e-18
NZ_AP022618.1\|WP_083029894.1\|2033361_2034873_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB	gnl\|CDD\|235489	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB.	0
NZ_AP022618.1\|WP_083029884.1\|2045411_2047136_+\|DUF3556-domain-containing-protein	gnl\|CDD\|371888	pfam12077, DUF3556, Transmembrane protein of unknown function (DUF3556). This family of transmembrane proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 576 to 592 amino acids in length.	0
NZ_AP022618.1\|WP_110810764.1\|2036103_2036961_+\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	1.73059e-18
NZ_AP022618.1\|WP_083029893.1\|2034877_2036008_-\|PQQ-dependent-sugar-dehydrogenase	gnl\|CDD\|225044	COG2133, COG2133, Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism].	9.09738e-61
NZ_AP022618.1\|WP_083029888.1\|2040185_2041199_+\|ketol-acid-reductoisomerase	gnl\|CDD\|235491	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional.	0
NZ_AP022618.1\|WP_083029885.1\|2044331_2045342_+\|3-isopropylmalate-dehydrogenase	gnl\|CDD\|179579	PRK03437, PRK03437, 3-isopropylmalate dehydrogenase; Provisional.	0
NZ_AP022618.1\|WP_083029886.1\|2042748_2044332_+\|phosphoglycerate-dehydrogenase	gnl\|CDD\|237436	PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional.	0
NZ_AP022618.1\|WP_083029882.1\|2049058_2049673_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	2.76589e-07
NZ_AP022618.1\|WP_083029881.1\|2049756_2050959_+\|DUF2236-domain-containing-protein	gnl\|CDD\|378343	pfam09995, DUF2236, Uncharacterized protein conserved in bacteria (DUF2236). This domain, found in various hypothetical bacterial proteins, has no known function. This family contains a highly conserved arginine and histidine that may be active site residues for an as yet unknown catalytic activity.	2.38267e-20
NZ_AP022618.1\|WP_110810769.1\|2037718_2039524_+\|acetolactate-synthase-large-subunit	gnl\|CDD\|236098	PRK07789, PRK07789, acetolactate synthase 1 catalytic subunit; Validated.	0
NZ_AP022618.1\|WP_083029887.1\|2041253_2042678_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224154	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism].	3.04592e-69
NZ_AP022618.1\|WP_083029897.1\|2030926_2032414_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	gnl\|CDD\|234572	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA.	0
NZ_AP022618.1\|WP_083029883.1\|2047249_2048998_-\|ubiquinone-dependent-pyruvate-dehydrogenase	gnl\|CDD\|181661	PRK09124, PRK09124, ubiquinone-dependent pyruvate dehydrogenase.	0
NZ_AP022618.1\|WP_083029879.1\|2052224_2053496_-\|HNH-endonuclease	gnl\|CDD\|367155	pfam02720, DUF222, Domain of unknown function (DUF222). This family is often found associated to the N-terminus of the HNH endonuclease domain pfam01844. The function of this domain is uncertain. This family has been called the 13E12 repeat family.	4.26543e-14
NZ_AP022618.1\|WP_083029880.1\|2051017_2052208_+\|MFS-transporter	gnl\|CDD\|341028	cd17475, MFS_MT3072_like, Mycobacterium tuberculosis uncharacterized MFS-type transporter MT3072 and similar transporters of the Major Facilitator Superfamily. This family includes the Mycobacterium tuberculosis uncharacterized MFS-type transporter MT3072. It belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.64953e-75
NZ_AP022618.1\|WP_083029914.1\|2030630_2030930_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	gnl\|CDD\|178810	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC.	7.82677e-38

>NZ_AP022618.1|WP_110810769.1|2037718_2039524_+|acetolactate-synthase-large-subunit
MPGNGVKPAVTRAPAQTVAPVQLTGAQAVVRSLEEIGVDTIFGIPGGAVLPVYDPLYDSTKLRHVLVRHEQGAGHAASGYAHATGKVGVMMATSGPGATNLVTPLADAQMDSIPVVAITGQVGRGLIGTDAFQEADISGITMPITKHNFLVNNGDDIPRVIAEAFHIAATGRPGAVLVDIPKDVLQAQCTFSWPPTLELPGYKPNTRPHSRQIREAARCIAGSSKPVLYVGGGVIRGEATAELLELAELTGIPVVTTLMARGAFPDSHPQHLGMPGMHGSVAAVAALQRADLLIALGTRFDDRVTGQLDSFAPDAKIIHADIDPAEIGKNRHADVPIVGDVKAVIVELIAALRKAEVPGNLNMESWWEYLGGLRATYPLSYGPQSDGSLSPEFVIEKLGEIAGPEAIYVAGVGQHQMWAAQFIKYEKPKTWLNSGGLGTMGFAIPAAMGAKLARPEAEVWAVDGDGCFQMTNQELATCAIEGAPIKVALINNGNLGMVRQWQTLFYGERYSQTDLATHSQRIPDFVKLAEAMGCVGMRCERAEDVEDVIRAAREINDRPVVIDFIVGADAQVWPMVAAGTSNDQIMAARDIRPLFDNEDQV
>NZ_AP022618.1|WP_083029891.1|2037072_2037453_-|PH-domain-containing-protein
MARVKTPVVIRISPMAHFAVGFFALGLLIPVMIWVWTLPLLLIPVLGSVAIVRLRTTADADGVTARTLTGGRTIPWSDISGLSFKGGNWARAELRDGSSVTLPAVTFATLPLLTAASGGRVPNPYR
>NZ_AP022618.1|WP_110810764.1|2036103_2036961_+|DoxX-family-protein
MMAESAAQIPNSHSRALTLAGVTSSSEDPRWQRPASSSLVDPEDDLPADDYGGDFETTAIPSYQGSPGSSSSGQDVLHEPEPLPYVQPAATRYNTGPVEIEPIDDERVRAAGRRGTQDLGLLLLRVGFGALLIAHGLNKVFGWWGGTGMSGLRDTLTEMGYRHVDILGYVAAGTQITAGVLLVLGLFTPLAAAAALAYQVNTLLAGVNSDGGHNLAFFAPQGHEYDLTLAVIAAVITLVGPGRYGFDAGRGWARRPFIGSFFALLLGIGAGVGVWVLLNGANPLG
>NZ_AP022618.1|WP_083029893.1|2034877_2036008_-|PQQ-dependent-sugar-dehydrogenase
MELHRPGRHLLSAACLTLAVVLASSGCARFDNAQSEPFTPEPKRGGGMTTTTNPPPPLPGTPFPKACPATGVMQGCLEATSGLIMGSDSKTALVAERTTGAVKKIAIAAEPEVKMVIPVDPAGDGGLLDIVQSPSYQQDRLTYAYISTPTDNRVVRIADGDVPKDILTGIPKGATGNAGSLLFTSPTTLLVQTGDAGDPAAANDPNSRAGKVLRIEQPTTVNQAPTTTALSGLGAGGGMCLDPKDGSLYVTDRSPSGDRLQRITKDSKVSTVWNWPDKPGVAGCAALDGTVLVNLVNTKQTVAIRLDTGSGAVTGDPEVVRQDAHGHAWALKVGGDGNIWAATINRAVGDAGQHDDVVFPLFPTGGGFPRANDDKD
>NZ_AP022618.1|WP_083029894.1|2033361_2034873_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB
MSVAATADLLDYDDVIARYDPVMGMEVHVELSTATKMFCGCANRFGAEPNTLVCPTCLGLPGALPVLNEAAVSSAIRIGLALNCEIASWCRFARKNYFYPDQPKNYQISQYDEPIAFNGYLDVPLEDGTTWRVEIERAHMEEDTGKLTHLGSETGRIAGATTSLADFNRAGVPLIEIVTKPIEGAGERAPEIARAYVTALRDLLRGLDVSDVRMDQGSMRCDANVSLKPKGDSEFGTRTETKNVNSLKSVEVAVRYEMRRQAAVLTSGGRVTQETRHFHEDGYTSAGRAKETAEDYRYFPEPDLEPVAPSAELVEQLRTTIPELPWLARKRIQDEWGISDEVMRDLVNAGAVELVAATVAAGSSSESARAWWGSFLMQKANEAGVAVADLPITPVQVAAVVRLVDDGKLSNKLARQVVEGVLAGEGEPEAVMTARGLALVRDDSLIQSAVDEALAANPDVAEKIRGGKIAAAGAIVGAVMKATKGQADAARVRELVLQACGVS
>NZ_AP022618.1|WP_083029895.1|2033170_2033365_+|hypothetical-protein
MILPELFGLPPQVADLQFQLVDPALEVTGFVRHLCNHDAPGRPRSSVIHRHPDAAETVRIRIDA
>NZ_AP022618.1|WP_083029896.1|2032431_2033079_-|hypothetical-protein
MRITTLPAAVLALAGITAAAPAQAAPATAMVNVTAVNAQGQPANGYRVSGSAAQVSDCSNPSPAAVTAGVYSCYPTAASADVCWTATPGSLLCAGDPWARILHRVTYDGTLPAVTPISTPTPFAIELDDGSRCRGYAGGPGGAHVRKDGYELAYSCTGTVNVLRRTSPNRPATINRDQSQWTVLVGATDDPNADYPAPQTRTVTTAWFAAAPGAD
>NZ_AP022618.1|WP_083029897.1|2030926_2032414_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA
MSADDLTRLDAATLAAGIAAGELSSVEVTRAHLDRIAATDADYNAFLHVAPEQALAAAAEVDRTVAAGETLPSSLAGVPLALKDVFTTTDMPTTAGSKILAGWRSPYDATVTARLRAAGIPILGKTNMDEFAMGSSTENSAYGPTRNPWDTDRVPGGSGGGSAAALAAFQAPLAIGTDTGGSIRQPAALTATVGVKPTYGTVSRYGLIACASSLDQGGPCARTVLDTALLHEVIAGHDPRDSTSVPAAVPDVVAAARAGANGDLSGVRVGVVAQLHRGEGYQPGVLESFNAAVEQLRELGAQISEVDCPHIDQSMAAYYLILPSEVSSNLARFDAMRYGLRVGDDGTHSAEEVMALTREAGFGPEVKRRIMIGTYALSAGYYDAYYNQAQKVRTLIADDLNRAYESVDVLISPTTPTTAFRLGEKVDDPLAMYLFDLCTLPLNLAGHAGMSVPSGLSADDGLPVGLQIMAPALADDRLYRVGAAYEAVRAPIALP
>NZ_AP022618.1|WP_083029914.1|2030630_2030930_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC
MSQISRDDVAHLARLARLTLTDDELDSFSGQLDAILDHVGRIQSVDVTGVRPTDNPLKSVNVTRPDVVVPSLTQDQALQEAPASADGRFAVPQILGEGE
>NZ_AP022618.1|WP_083029551.1|2029458_2029980_+|hypothetical-protein
MPRTNRFDRAGRNAQLEREIEMNAGVSNSWQRAIAATVVLASATLGSSILGTGVASATDTTVEKTYSMTALDTIPVVIVCPPEAKYLTRGHLAPGRIVPDGIEVIEDGGIGVNMNSHYGAREEGRARSGATIIVEPINGGEGTATNWNTFGRKVKLIAHCTSDKNKSWLDDGS
>NZ_AP022618.1|WP_083029888.1|2040185_2041199_+|ketol-acid-reductoisomerase
MAVEMFYDDDADLSIIQGRKVGVIGYGSQGHAHALSLRDSGVQVKVGLKEGSKSREKVTEQGLEVDTPAEVAKWADVIMLLAPDTAQAEIFTNDIEPNLKDGDALFFGHGLNIHFGLIKPPANVTIGMVAPKGPGHLVRRQFVDGKGVPCLIAVDQDPKGEGQALALSYAKGIGGARAGVIKTTFKEETETDLFGEQAVLCGGTEELVKTGFEVMVEAGYAPEMAYFEVLHELKLIVDLMYEGGIARMNYSVSDTAEFGGYLSGPRVIDADTKERMRAILSDIQDGTFVKRLVANVEGGNKELEALRKKNAEHPIEVTGKKLRDLMSWVDRPITETA
>NZ_AP022618.1|WP_083029887.1|2041253_2042678_-|NAD(P)/FAD-dependent-oxidoreductase
MDVTVVGSGPNGLAAAVVCARAGLRVRIIEGQTTAGGGVRTLADPEFGGVAHDVCSAIHPMALASPFFREFGLADRIGLTVPALSYANPLSGRPALLAYRDLERTCAELSHPDSWRALFAPLTASPTAAAEVMLSDKRSVPPHPVLAARLGLRVGAQGSPAWRLLRGDDARALFAGVAAHAVSPLPSLPAAGLGTVLAALAHTVGWPVPIGGSQAIADALLDDFARHGGELVLGQPVTTPPPGVVIFDTPARALLDIYGDRLPPRYAAALRRLRYRSGVAKVDFVLSGDIPWADPRLAEVAMFHLGGDRDQMAAAESAVAAGRHAEHPMVLGASPHVGDPGRIDDRGRRPFWTYVHVPHGSPVDQAEAATATVERFAPGFRDVVLAVRSVPAPQMAEHNANLVGGDITGGGNSLWRTFAGPTLRANPWALPMPQAYLCSAATPPNGGVHGMAGFYAARTVLKREFRLRVPTLEP
>NZ_AP022618.1|WP_083029886.1|2042748_2044332_+|phosphoglycerate-dehydrogenase
MTLPVVLIADKLAESTVAALGDQVEVRWVDGPDRPKLLEAVADADALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHAVALLLSAARQVPAADATLRERTWKRSKFSGVELFGKTVGVVGLGRIGQLVAHRLAAFDTHIVAYDPYVPAARAAQLGIELLPLDEVLARADFITVHLPKTPETAGLLNREALAKTKPGVVIVNAARGGLIDEQALADAITSGHVRGAGLDVFSTEPCTDSPLFELEQVVVTPHLGASTAEAQDRAGTDVAESVKLALAGEFVPDAVNVGGGVVGDEVAPWLDLVSKLGVLVGALAPAAPVSLGVHIYGELAAEDADILALAALRGLFSTVVSEQVTFVNTPALAAERGVTAELTKTAESRNHRSAVDVVAVLSDGSTVNVAGTLAGPAAVQKIIQINGRNLDLRASGHNMIVNYRDQPGALGKIGTLLGAADVNIEAAQLSQDAEGDGATIMLRLDRDVPEDVRTQIADAVGATLLKVVAL
>NZ_AP022618.1|WP_083029885.1|2044331_2045342_+|3-isopropylmalate-dehydrogenase
MKLAIIAGDGIGPEVIGQAVRVLDVVLPGVEATEYDLGARRYHATGELLTDEIIEELRGYDAILLGAIGDPSVPSGVLERGLLLKLRFALDHHINLRPSKLQTGVDSPLAGNPDIDFVVVREGTEGPYTGTGGAIRVGTEHEVATEVSLNTAFGIERVVRDAFARAQTRRKHLTLVHKTNVLTFAGALWLRIVEQVGKEYPDVEVAYQHIDAATIHLVTDPGRFDVIVTDNLFGDIITDLAAAVSGGIGLAASGNIDGSRRNPSMFEPVHGSAPDIAGQGIADPTAAVMSVALLLSHLGEDEAAARVDRAVEAHLASRGDAKLSTSEVGDRILANL
>NZ_AP022618.1|WP_083029884.1|2045411_2047136_+|DUF3556-domain-containing-protein
MGFTSPDLPKVDPDEWRRGSRAQRLRPMARHIAERGMGYPDVFYVLYAIKIVVYILGGLGFALTTKGIDGWGNIGTWWSEPIVFQKVVLWSLLFEVLGLGCGFGPLTGKVMPPLGSPLYWLRTGTIRLPPWPGRIPGTAGDRRTVGDVVAYAGLLIAVLYALCSDGTGPVAGLDSAVGQLPAWKPAVVVGLLALIGLRDKTIFLAARGEVYGTLTLMFVIPGVTMIVGAKFVLLAIWLGAAVSKMNRHFPYVIATMMANNPFIRVKALRRSFFRRYPDDLQPSWIPRLLAHIGTAIELLVPPVLFFSHGGVVTYVGAAILILLHVIILFSIPLGVPLEWNVFMIFSVATLFVDKAAIGPADMVFPWAALVIAVMSVVVVTVVIGNLFPKRVSFLPGMRYYAGNWDVSVWCVTESACDKIADARIGLGLLPHKQIEKFYGAEDAEVPKELALAFRVMFANGRALLTLLGRALPAGRERDYAILEGEQFCAYAVGWNFGDGHLHNEQLIDALQSRCGFAPGEVRVILVDGQPIHRQSHEYRLVDAATGEFERGTFRVADTCARQPWQDDVPVQVAN
>NZ_AP022618.1|WP_083029883.1|2047249_2048998_-|ubiquinone-dependent-pyruvate-dehydrogenase
MARTVSQLILDTVKAAGVQRIYGLPGDSLNALTDALRGDGSLAWVHVRHEEAAAFAAGAEAALTGNLAVCVASCGPGNLHLINGLFDAQRSRVPVLAIASHIPGAEIGSGYFQETHPQNLFAECSVYSELVSSVDQLPYLLDIAVRAALDQRGVAVLTIPGEILAARTDIPAPAEPITAGIGIRLPDTAGLRRAAELLDSARAVTILAGAGCQGAHAELLAVAGLLQAPVVHTMRGKEFVEYDNPFDVGMTGLLGFRSGYQAMEDADVLLMLGTDFPYRQFYPTGAKIIQVDIRGEHIGRRARVDVALVGSVKDTLTQLGSTLRQHTDTHHLDASRGTYARTRAQLDSLATGDRNRTPVLPEFLTRRIDALSADDAVFIADVGTPVIWAARYLTMNGHRRLLGSFNHGSMANAVPQAIGAQASHPGRQVVTLSGDGGLSMMLGDLLTLTQSELPVKMIVFNNGALSFVEIEMKAAGIVNFGTGLDNPVFADVAQAMGIHADRVERPSEIDGALSAAFAHPGPALVEVLTARQELSIPPTINAAQVAGFSLWATKTLLSGRGDELIDLAKTNLGARLHRRKPQ
>NZ_AP022618.1|WP_083029882.1|2049058_2049673_-|TetR/AcrR-family-transcriptional-regulator
MSGRARTYAGATAGERATRRRAALLDAALDVIAESGVAGVTVRGVCAAARLNDRYFYESFANTDDLMVATFEAQMTASAAEMVAAIAASPPDPLLRARAAIGTGLGYLTADPRRGRLLVESQATEALRARRRDVITMLAQIMAEQGRTLLPIENPLDADMDLAAHTLVAGGLDLVTGWLRGEVDVSREHLEDFLVAMVTARRRA
>NZ_AP022618.1|WP_083029881.1|2049756_2050959_+|DUF2236-domain-containing-protein
MGSTAPKLPNPAALSDFPFNVFVRLLADGDVRATAAQRGSFRRFADMGDPLADDVVAMIASMPPRVGRSMFETAVERGIDAVDDPPPELVAFFAQVDDQPYWLDYDKLDLAARVSMRTGIVGIGLALPGLALTGGYLASKADKPLVGTGDLYRMAPRRLNETANWYIDVTSPGGLQRFARGFTGTLRVRLMHAQVRAAMRRRDDWDYDNWDMPINQVQLAGTLMLFSLANLAGCQAMGMRFSDRERDAVYHFWRYVGLLMGLDPELVPTCEADTWRLFWLEADTEFLPDDDSARLARALHDHRDDGWQTEAARAYLSAYSRLVLGRTNADRLGLADNKPLQAAVLVTALANRVFDYHRVVPGMTRLAEEMGQRARRGFISRGIKETGGDRTYGRHDKLAG
>NZ_AP022618.1|WP_083029880.1|2051017_2052208_+|MFS-transporter
MDTIGTARRWSILLVALCATLFSNVFINGVAFLIPTLHRDLGLDLARAGLVSAMPSFGMVLTLIAWGAVVDRIGERTVLALGSALTAAAAFGAAAADSLIAVQVFLLLGGMAAASSNAASARMVVGWFPPEQRGLAMGIRQTAQPLGVGLGALVIPQLAAAHGVSVALMFPGVVCAIAAVLSVMCLVDPPRPARADAHPDDLANPYRGSDTLWRIHLVSVLLVVPQCLVWTFTLVWLMTDRGWSASAAGAIVTVAQLLGAAGRIAAGRWSDRIGSRLRPIRSIALAAAVSMALLAVTEVFDSPISVLLMLVASVVTVSDNGLAFTAIAEIAGPFWSGRALGAQNTSQLFTCGVVPPAFGALIGTAGYAVAFGVCAVFPLIALPLIPVRDDPLAKAL
>NZ_AP022618.1|WP_083029879.1|2052224_2053496_-|HNH-endonuclease
MFGLVGSGVDLQDEAALVAGIAELERLKSQAAATQARLAAQLATVRHDAEVAAGVPVARRGRGLAAEIALARHDSPNRGNRHLGFAQALVHEMPHTLAALEAGALSEWRATLIVRESACLNVDDRATLDAELCADPAALEGLGDGRIAAAAKAIAYRLDPHAVVDRAVKAEADRCVTIRPAPENMIYLTALLPMVKGVSVYAALRRAADTCGDGRGRGQAMADTLIERITGRPAATPEPIAVNLVLSDETLTGGNDPAVMPGFGPVPADIARRLIGAALDCPEVRATLRRLYARPDSGALVTMESKARLFPKGLATLIRLRDHTCRTPYCDAPIRHTDHIDPAVHGGPTSEHNGQGLCEACNHNKQADGWNITPIDHARHTTDIATPTGHHYRSTAPPILSGRKPFSPMEKSLSKTLREQHAA

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Crispr_ID: NZ_AP022618_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022618_11

2211149-2211228

Orphan

Consensus_repeat	Method
CCTCGCGGACCGCCTGCGCCGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP022618_11

>merge|NZ_AP022618|11|2211149-2211228|CRISPRCasFinder
CCTCGCGGACCGCCTGCGCCGCTACGGCTGTCACGCGCTACGGCGTCACGCTCGTTCCTCGCGCACCGCCTGCGCCGCTA

>NZ_AP022618|11|11|2211149-2211228|CRISPRCasFinder
CCTCGCGGACCGCCTGCGCCGCTA	CGGCTGTCACGCGCTACGGCGTCACGCTCGTT
CCTCGCGCACCGCCTGCGCCGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022618.1\|WP_083030788.1\|2207583_2209176_+\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|180854
NZ_AP022618.1\|WP_133052928.1\|2206985_2207501_+\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|378915
NZ_AP022618.1\|WP_163787853.1\|2220075_2222805_+\|translation-initiation-factor-IF-2	unknown	unknown	gnl\|CDD\|235401
NZ_AP022618.1\|WP_083030796.1\|2198679_2200182_+\|MmgE/PrpD-family-protein	unknown	unknown	gnl\|CDD\|224990
NZ_AP022618.1\|WP_133052929.1\|2205676_2206639_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022618.1\|WP_083029564.1\|2222829_2223336_+\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787
NZ_AP022618.1\|WP_170312530.1\|2223268_2224309_+\|DHH-family-phosphoesterase	unknown	unknown	gnl\|CDD\|223691
NZ_AP022618.1\|WP_163787968.1\|2217434_2219189_-\|protein-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_AP022618.1\|WP_083030791.1\|2202226_2205610_+\|pyruvate-carboxylase	unknown	unknown	gnl\|CDD\|237263
NZ_AP022618.1\|WP_083030787.1\|2209364_2210111_+\|glucose-1-dehydrogenase	unknown	unknown	gnl\|CDD\|187620
NZ_AP022618.1\|WP_083030782.1\|2215105_2215699_+\|ribosome-maturation-factor-RimP	unknown	unknown	gnl\|CDD\|234627
NZ_AP022618.1\|WP_083030852.1\|2219701_2220013_+\|YlxR-family-protein	unknown	unknown	gnl\|CDD\|377288
NZ_AP022618.1\|WP_083030783.1\|2214471_2214978_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022618.1\|WP_083030794.1\|2200181_2201099_+\|methylisocitrate-lyase	unknown	unknown	gnl\|CDD\|131370
NZ_AP022618.1\|WP_083030781.1\|2215695_2216694_+\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|237061
NZ_AP022618.1\|WP_083030792.1\|2201095_2202220_+\|bifunctional-2-methylcitrate-synthase/citrate-synthase	unknown	unknown	gnl\|CDD\|237590
NZ_AP022618.1\|WP_083030784.1\|2213881_2214475_-\|ferritin-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|373114
NZ_AP022618.1\|WP_083030798.1\|2197148_2198600_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226322
NZ_AP022618.1\|WP_133052927.1\|2216859_2217360_-\|LytR-C-terminal-domain-containing-protein	unknown	unknown	unknown
NZ_AP022618.1\|WP_083030786.1\|2210126_2211020_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_AP022618.1\|WP_083030788.1\|2207583_2209176_+\|FAD-binding-protein	gnl\|CDD\|180854	PRK07121, PRK07121, FAD-binding protein.	0
NZ_AP022618.1\|WP_133052928.1\|2206985_2207501_+\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|378915	pfam12680, SnoaL_2, SnoaL-like domain. This family contains a large number of proteins that share the SnoaL fold.	0.00565272
NZ_AP022618.1\|WP_163787853.1\|2220075_2222805_+\|translation-initiation-factor-IF-2	gnl\|CDD\|235401	PRK05306, infB, translation initiation factor IF-2; Validated.	0
NZ_AP022618.1\|WP_083030796.1\|2198679_2200182_+\|MmgE/PrpD-family-protein	gnl\|CDD\|224990	COG2079, PrpD, Uncharacterized protein involved in propionate catabolism [General function prediction only].	4.06409e-149
NZ_AP022618.1\|WP_083029564.1\|2222829_2223336_+\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	4.67794e-43
NZ_AP022618.1\|WP_170312530.1\|2223268_2224309_+\|DHH-family-phosphoesterase	gnl\|CDD\|223691	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only].	1.11654e-65
NZ_AP022618.1\|WP_163787968.1\|2217434_2219189_-\|protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	6.17129e-106
NZ_AP022618.1\|WP_083030791.1\|2202226_2205610_+\|pyruvate-carboxylase	gnl\|CDD\|237263	PRK12999, PRK12999, pyruvate carboxylase; Reviewed.	0
NZ_AP022618.1\|WP_083030787.1\|2209364_2210111_+\|glucose-1-dehydrogenase	gnl\|CDD\|187620	cd05362, THN_reductase-like_SDR_c, tetrahydroxynaphthalene/trihydroxynaphthalene reductase-like, classical (c) SDRs. 1,3,6,8-tetrahydroxynaphthalene reductase (4HNR) of Magnaporthe grisea and the related 1,3,8-trihydroxynaphthalene reductase (3HNR) are typical members of the SDR family containing the canonical glycine rich NAD(P)-binding site and active site tetrad, and function in fungal melanin biosynthesis. This subgroup also includes an SDR from Norway spruce that may function to protect against both biotic and abitoic stress. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	4.19265e-85
NZ_AP022618.1\|WP_083030781.1\|2215695_2216694_+\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|237061	PRK12327, nusA, transcription elongation factor NusA; Provisional.	0
NZ_AP022618.1\|WP_083030852.1\|2219701_2220013_+\|YlxR-family-protein	gnl\|CDD\|377288	pfam04296, DUF448, Protein of unknown function (DUF448).	2.22594e-23
NZ_AP022618.1\|WP_083030794.1\|2200181_2201099_+\|methylisocitrate-lyase	gnl\|CDD\|131370	TIGR02317, Methylisocitrate_lyase, methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.	2.58003e-145
NZ_AP022618.1\|WP_083030782.1\|2215105_2215699_+\|ribosome-maturation-factor-RimP	gnl\|CDD\|234627	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed.	1.17439e-39
NZ_AP022618.1\|WP_083030792.1\|2201095_2202220_+\|bifunctional-2-methylcitrate-synthase/citrate-synthase	gnl\|CDD\|237590	PRK14033, PRK14033, bifunctional 2-methylcitrate synthase/citrate synthase.	0
NZ_AP022618.1\|WP_083030784.1\|2213881_2214475_-\|ferritin-like-domain-containing-protein	gnl\|CDD\|373114	pfam14530, DUF4439, Domain of unknown function (DUF4439). This domain has a ferritin-like fold.	1.3964e-31
NZ_AP022618.1\|WP_083030798.1\|2197148_2198600_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|226322	COG3800, COG3800, Predicted transcriptional regulator [General function prediction only].	3.13089e-156

>NZ_AP022618.1|WP_083030786.1|2210126_2211020_-|hypothetical-protein
MQLNTVALELVAPNVEHGVERAHEDAEKVLRHSAQSGIAGRIGHIMIPGMIPEDNDRPMPMKPKLDVLDFWSILGPELPGVKGLCTQVTSFTDKAALGERLTVLNNAGFDGIIFVGVPRTMSDGEGGGVAPTDALSMFADQVDNRGAILIPTRDGEQGRFEFKCAQGATFGMTQLLYSDAIVGFLRDFARESDHRPELLLSFGFVPKLEGKVGLINWLIQDPGNEAVAREQEFVRRLAGDEPAGKRRDLVDLYKRVIDGVVDLGFPLSVHFEAPYGVSAPAFDTFAEMLAYWSPDAG
>NZ_AP022618.1|WP_083030787.1|2209364_2210111_+|glucose-1-dehydrogenase
MSNLEGRVAIVTGSSRGIGAATARRLAADGATVVVNYVASADKAEGVVESIRQAGGKAIAIQADMGDWKQAQGLVEQTVKELGRLDILVNNAVQEVGREPIEDVTEEFTHKQFNVNIIGPIAAIQAAAPLFPAEGGRIINISSCVTVHPVPWSAVYSGTKAGLEGTTRSLAVELGPRNVTVNTIGVGFTATELIGTNTPEQNAALIARTPLGRIGQPEDIADAVSLLASSDARWITGQLVLATGGIVP
>NZ_AP022618.1|WP_083030788.1|2207583_2209176_+|FAD-binding-protein
MSGPVVSTEVLVVGFGAAGACAALEARAAGADVLVVDRFNGGGATAISGGIIYAGGGTSVQRTAGVHDTADGMLTYLRAEVGDAVRPETLERFVATSPAMIDWLSGHGVPFDASVCPYKTSYPNNRYYLYYSGSECAGAFRDLTPPVQRGHRAKGRGASGKQVYDPLAASVRRSGARIQLHTRVTGLIIEGGRVIGADAVTLAGAPDRVRRRFARMAAIAAKPGIYYPPLRRVLESRMALLEKRFGQQIRIAASKGVILCAGGYIANTEMIATHAPQFTSGLALGTTGDDGAGIAMAVAAGGVTDHLDDVSAWRFITPPSTFFGAIVVDENGRRMIDESRYGAALGRQLVREHDGRGWILADAATMREATRQLPRESLWFQLVLAVGLSASGRVRGHTLAEVARKAGIDPAGLAVTVAAHNDAIAAGQPDPMGKPADFTRVIGDGPYTLLDISVRPSVIYPCPMFTLGGVRVDEQTGEVTRADGTPIRGLYAAGRTAVGICANSYVSGLSIADCVFSGRRAGAHAATAGD
>NZ_AP022618.1|WP_133052928.1|2206985_2207501_+|nuclear-transport-factor-2-family-protein
MATTLTLEEMEALLAEHEAAEFNLDIDRTMATLIDVPVFELPGLNLRIEGYDAVAEMYRRLLAGGDARNFWAEKITHAIAENSLVREAYIYFDTADGERKTGRYNVVMEFEGDKIKGERFFMDATYTEVIREVMGEDFLDVPGVFPLDQKSPPPLARIVDRAAAHAANSNH
>NZ_AP022618.1|WP_133052929.1|2205676_2206639_+|hypothetical-protein
MPEPMDARDGGALAIVRYFDGLSRKGATLDELVRAAARLAGVPAGVRYDGLTVRFAPNGRRLPETVGVGVANPEIAAHAGPVWLERRGMTQPNDELIAERLAVAAEVIGAYRAPAGLLTAIDAAHSYDMRATGLADLNIETDARVRLIATPPSVALADTLSAVVPTRYGLLRATLVTSDSDVPTGRAGLGLWVRADHAPQSWLAAVIAYRLAEPDNPIIDAVDLGALLVLAQAYDPDNPHPDVTALSRLDVRTAMILRALVEADSIRSAASALQMHHSTVQVRHEALTRELGYDPRTPVGRMRYSSAEMLRRLTIDWPTA
>NZ_AP022618.1|WP_083030791.1|2202226_2205610_+|pyruvate-carboxylase
MISKVLVANRGEIAIRAFRAAYELGLSTVAVFPYEDRNSVHRLKSDESYQIGEQGHPVRAYLSVDEIVSTALASGADAIYPGYGFLSENPQLAAECARNGITFVGPSADVLELTGNKATAIAAARAAGLPVLRSSEPSSDIAELQAAAPEVGFPLFVKAVAGGGGRGMRRVTEPGELAEAIEAASREAESAFGDPMVFLEQAVINPRHIEVQILADTYGNVMHLFERDCSVQRRHQKVIELAPAPNLDPALRERMCADAVAFARHIGYSCAGTVEFLLDERGEYVFIEMNPRIQVEHTVTEEITDVDLVSSQLRIAAGESLADLGLSQDEIAIRGTALQCRITTEDPGNGFRPDTGRITGYRSPGGAGIRLDGGATLGAEVGAHFDSMLVKLTCRGRDFATAVRRARRALAEFRIRGVSTNIGFLQAVLDDPDFLAGRVTTSFIDERPALLTARTSADRGTKILSFLADVTVNRPHGERPSALYPRDKLPGVDLDLNPQPGSKQLLDELGPAGFAKWLRDSPGVKVTDTTFRDAHQSLLATRLRTSGLARVAPYVARLMPELLSVECWGGATYDVALRFLKQDPWERLAALREGMPNLCLQMLLRGRNTVGYTPYPVAVTDAFVDEAARTGVDIFRIFDALNNVESMRPAIDAVLATGTTVAEVAMSYTGDLSDPDEKLYTLDYYLRLAEQIVDAGAHVLAIKDMAGLLRAPAAHTLVSALRSRFDLPVHVHTHDTPGGQLATYVAAWQAGASAVDGAAAPLSGTTSQPSLSSIVAAAAHTEYDTGLSLDAVCSLEPYWEGVRRVYAPFEAGLPSPTGRVYTHEIPGGQLSNLRTQAIALGLGDRFEDIENAYAGADRILGHLVKVTPSSKVVGDLALALVGTGATAEEFAADPGRYDIPESVIGFFRGELGDPPGGWPEPLRTKVLAGRGPARAETPLSDGDRAVLERPGVERQARLNALLFPGPTAEFEAHRAEFGDTSQLSANQFFYGLRQGEEHRVKIDKGVELLIGIQAISEPDEKGMRTVMCLLNGQMRPIRVRDRSIAADVPAAEKADKANPNQVAAPFSGAVTLTVTQGDTVEAGQTIATIEAMKMEANITAPKSGTITRTAISATTHVDGGDLLVVIG
>NZ_AP022618.1|WP_083030792.1|2201095_2202220_+|bifunctional-2-methylcitrate-synthase/citrate-synthase
MTVTDEPRKIFKGLAGVVVDTTAISKVVPETNTLTYRGYAVQDLAANCSFEQVAWLLWHGELPTDEQLASFTERERAARALTPGLSALLSGLSETCHPMDVVRTAISYLGAQDPAEDDPSEQANLAKSERMFAVLPTIVAADMRRRRGLAPIEPRSDLGYSENFLNMCFGEVPEPEIVAAFGASMVLYAEHSFNASTFAARVVTSTTSDIYSAVTAGIGALKGALHGGANEAVMHDMIEIGTPDKAAEWLHGKLSRKDKVMGFGHRVYKNGDSRVPTMKESLLAVAAVRDGQNWVDIYNVLESAMYAATKIKPNLDFPTGPAYYLMGFDIGSFTPIFVMSRITGWTAHIMEQAASNALIRPLSDYVGPPQRPLG
>NZ_AP022618.1|WP_083030794.1|2200181_2201099_+|methylisocitrate-lyase
MTGLLGAPSAPADKRRRFRQGLESGKLQRFPGAFSPLVAKLIAELGFEGVYVSGAVLSADLGLPDIGLTTLTEVTGRGAQIASVTDLPTFIDADTGFGEPMSAARTVTVMEDAGLAGLHLEDQVNPKRCGHLDGKAVVPTSEMIKRIRAAVTARRDPNFIICARTDAAGIEGIPAAIERAKAYADAGADLIFTEALHTPADFEQFRAAVVTPLLANMTEFGKSELLTAAQLSDIGYNIVIYPVTTLRIAMGAVERGLREIDSTGTQAGLLDQMQHRSRLYELLRYTEYNQFDSDIYNFALQGVQR
>NZ_AP022618.1|WP_083030796.1|2198679_2200182_+|MmgE/PrpD-family-protein
MQIHDVRTHRSAEDFPRHEHLAAKIAKVAADPVAVPADTQEMVLNRIIDNASVSAASVIRRPVTVARVQAQAHPATTGSGVFGITGSYSPEWAAWANGVAVRELDFHDTFLAAEYSHPGDNIPPLVAVAQRLGATGADLIRGLATAYEIQIDLVKGICLHKHKIDHVAHLGASAAAGIGTMLHLDEDTIYNAIGQALHLTTSTRQSRKGLISSWKAYAPAYAGKVAIEAVDRAMRGEGSPSPIWEGEDGVIAWLLDGPEHTYQVPLPAPGEPKRAILDSYTKEHSAEYQSQAPIDLARRMREKISNLDDIESIVLHTSNHTHVVIGTGSGDPQKFDPDASRETLDHSVMYIFAVALQDGTWHHERSYAPERAHRPDTVELWRKISTVEDPEWTRRYHSLDPAEKAFGARAVITLKNGEVITDELAVADAHPLGARPFARQQYINKFLELSEGVVESAEQQRFLAVVDGLADAPAGGADALNIVVDPIVLDKAPTIGAGIF
>NZ_AP022618.1|WP_083030798.1|2197148_2198600_-|helix-turn-helix-transcriptional-regulator
MQTLCKPRGVSSANVAKSFAGARLRRLREERGLTQVALARALGLSTSYVNQLENDQRPMTVSVLLSVTERFDLPPQYFATDSDARLIADLREILVDERVTPGQIEELVARMPEVGQTLVNLHRRLHDTNVELEALHGQAAPGATGSPEVGQPMPFEEVRDFFYDRKNYIGELDMAAEALFTEHNMRVGELDVRLAELLESTLGIRVILDDTLAPNAKRIFDKENRTLRLARWLYPGQRAFQLATQIALLEYSPAITALLAADDQLSADARGVARIGLANYFAGALLLPYRQFLETAEALRYDIDALARRFNVGFETICHRLSTLQRPDARGVPFIFVRTDSAGNISKRQSATAFHFSRVGGNCPLWVVHRAFAQPGQFLTQVAQMPDDRSYFWLARTVTSEPSHYLGARKRFAIGLGCELAHADRLVYAAGIDLSDAEAMVPIGAGCKICDRPACPQRAFPYLGRPVLVHPDWSTDLPYPPGR
>NZ_AP022618.1|WP_083030784.1|2213881_2214475_-|ferritin-like-domain-containing-protein
MTSVEPRPSTPATTTPAPSATPRPSSTTPSTTASTPSSTTTEPPTTSSAPDRPTDPGPAALYDAIATEHGVIYGYGMVSAHSSPELNPLVSEALSSHRERREHAIALAGELKTTAPLPAVGYQLPITVENPTDAATLAVRMEEDSATAWRAVLEQTNSEEARKLAVTSLTDAAVLAARWRAESNRSPVTVAFPGGTE
>NZ_AP022618.1|WP_083030783.1|2214471_2214978_-|hypothetical-protein
MWAVPADTPLSRRSVLRAAVGAAAIGVLVSACGHDEHNEPDTLLPQLEAARSDAALATAAAAAPGLSPATVAAYTEVATERGKHADALAAEITRAIGSSPTSSTTAAGGTAAAPAPARRDVVAALTRSAESASGRAVTESGYRAGLLGSIAASCTALYLVGLPEEPKP
>NZ_AP022618.1|WP_083030782.1|2215105_2215699_+|ribosome-maturation-factor-RimP
MPGTDRPWTTQDEELAVTQQFAGLPSPPQVIELLAADFAEAGYDVEDVLVVTGTSPRITVIADGDTPLDLDVIADLSRRASALLDEALPEDTPAYLLEVSSAGLDRPLTAEKHFRRARGRKAELALADGATVTGRLGRVDDGALDLVVRAGRDVAVRRIPLADIEKAVVQVEFSTPNPRELELAGVPGPQTGTEAAE
>NZ_AP022618.1|WP_083030781.1|2215695_2216694_+|transcription-termination/antitermination-protein-NusA
MNIDMAALHAIESERGIPEGELLETIKTALLTAYRHTEGHQAEARIDIDRKTGEVRVMAAEHDDDGRLISEWDDTPDGFGRVAATTARQVMLQRLRDAENEKMYGEFSAREGDIVAGVVQRDARANARGDVVLRMGSDTKFSEGVIPSSEQVPGESYAHGDRLRCFVLGVTRGNREPQIRLSRTHPNLVRQLFALEVPEIADKSVDIVAVAREAGHRSKIAVASKVSGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDWDPDPARFVANALSPAKVVSVTVIDAATKSARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDAEEAPE
>NZ_AP022618.1|WP_133052927.1|2216859_2217360_-|LytR-C-terminal-domain-containing-protein
MAQSQHEDDSAFVPITAPTPLEAEASKKLLLVGAAAILLIVAFVVVVAMTSRNKFSVAPNHADSAASSSLPAAETARPAVHVYNVSRVDAADARVAGRLRDAYWNATSDGRLEMPEVTVTTIYYDGRVQGEQDAAGEAALLIGAAVQPRTPALAGQPHGLIVLVTG
>NZ_AP022618.1|WP_163787968.1|2217434_2219189_-|protein-kinase
MGEVWRAYDTGTDRIVALKLLPAHLAEDPSFEQRFRREAHSAARLNNAHIVPIHDYGEIDGRLYVDMALIDGHDLAGEIAGGPLAPARAAAIVEQIALALQAAHKTGLVHRDIKPSNILIGDDDTAYLIDFGIARSAVDARLTGTDNTIGTWAYMAPERFTTDDVDPRSDTYALACVLYEALTGTKPFPGDSMERQVTGHLHNPPPRPSATRADLPPAFDAVVAVGMAKDPQQRFQTAPELAAAVRGALGGAAPSAARVASAVGDVPPTRVVAPSPQHSRRKPLLIVGAVIAVAAVITAVALLWPNSSAHKQNSAPPSETATTTQAATTTYGEPVALPFTGLDFPTGVAIEDDGSVLVADAGSNQILRLRSGTEVAEELPFTGLNKPAAVAVGADGAVYVTDTGNNRVLKLDANSEAPKELSFGLDSTASALGIAVGADGTVYVTDFNNDRVLELSPGETAATERLSQSPLSSPSDIALDGNGNLFIANSGPNQVLELTPRAVVPTELAVSQLSVPTGLAVDSTGTVYVSDDFNRVVKFNPQTAEQFDLPFTGLSSPGGVAVDADGNVYVADGDNKRVVKLPAA
>NZ_AP022618.1|WP_083030852.1|2219701_2220013_+|YlxR-family-protein
MRTCVGCRKRELAAELIKMSARPDGDDGYVVVVDTAGNLPGRGAWLHPDQDCLATAIRRRAIARALRIAGSPDTTGVAEQLELLDGPSNRTGSNEHEHTVKSR
>NZ_AP022618.1|WP_163787853.1|2220075_2222805_+|translation-initiation-factor-IF-2
MAGKARVHELAKELGVTSKEVLARLSEQGEFVKSASSTVEAPVARRLRESFGGGKAAPEAAPAAAKAPAKSPTPGPVPGPKPAPKPPAPEAPAAPAPPAPAPAAQAPAPAAPAAPAAPAAGPTPGAAPGPRPAAPGPKPGAPRPPRVGNNPFSSQQPVERAIPRPAPRPAPGPGGPRPGPRATPGNMPARPGASMPRPPRPGGPRPGPGGGGGRPGGPRPAPGGAGGGGNYRGGAPGAGPGGAAGGGGFRGRPGGAPAGGGGGGRPGQRGGAAGAFGRPGGAPKRGRKSKRAKRAEYENMQAPIVGGVRLPHGNGETIRLARGASLSDFAEKINANPAALVQALFNLGEMVTATQSVGDDTLELLGSEMNYVVQVVSPEDEDRELLESFDLTYGEDAGDEEDLEQRPPVVTVMGHVDHGKTRLLDTIRKANVHEGEAGGITQHIGAYQVSVEHDGVERLITFIDTPGHEAFTAMRARGAKATDIAILVVAADDGVMPQTVEAINHAQAADVPIVVAVNKIDKEGADPQKIRAQLTEYNLVAEDFGGDTMFVDISAKNGTNIQALEEAVLLTADASLDLRANPDMEAQGVAIEAHLDRGRGPVATVLIQRGTLRVGDSIVAGDAYGRVRRMVDEHGEDVEEALPSRPVQVIGFTSVPGAGDNLLVVDEDRIARQIADRRSARKRNALAARSRKRISLEDLDSALKETSQLNLILKGDNAGTVEALEEALMGIQVDDEVQLRVIDRGVGGITETNVNLASASDAIIIGFNVRAEGKATELANREGVEIRYYSIIYQAIDEVEAALKGMLKPVYEEKELGRAEIRAIFRSSKVGNIAGCLVTSGIMRRNAKARLLRDNVVVAENLTISSLKREKDDATEVRDGYECGLTLTYNDIKEGDVIETYELVEKARS
>NZ_AP022618.1|WP_083029564.1|2222829_2223336_+|30S-ribosome-binding-factor-RbfA
MADPARAKRLAKRIATIVASAIEYEIKDPRLAGVTITDAKVTGDLHDATLYYTVLGTSLNEEPDYAGAAAALESAKGVLRSKVGAGTGVRFTPTLAFFRDTVPEAADRMEQLLEAARAADAEVARAREGAVPAGDPDPYRTPADREDEDDELGDEDAEVTGDRDRTVG
>NZ_AP022618.1|WP_170312530.1|2223268_2224309_+|DHH-family-phosphoesterase
MRTTNWGTRTRRSPVTAIEPSAEAPGRRVDAHGAIAVLNAADDIVIVAHVFPDADTIGAGLALAQVLERLGKRVAVSFARPAALPDSLRSLPGGHLLAHPDEVSPNPDLVVTVDIPSRSRLGALGQLAEPDCGRPVLVIDHHASNPMFGSANYVDRSADSTTMLVAELLDAWEQPIDVAVAHCLYAGLITDTGSFRWASARAHRLAARLIDVGVDNGAVSRTLLDTHPFSWLPMLSRVLSSARLLPDEVDGRGLAYAVIEHREVAAARIEEVESVVDIVRTTEQADVSAVFKEVEPGKWSVSLRAKSVDLTPVASGFGGGGHRFAAGYSASGPVELLVDQLRAALG

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Crispr_ID: NZ_AP022618_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022618_12

2394353-2394452

Orphan

Consensus_repeat	Method
CCTGATCGGTGCCCTCGGCACGTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP022618_12

>merge|NZ_AP022618|12|2394353-2394452|CRISPRCasFinder
CCGGGCCGCCGCCTCCGGCACGTACCCTGATCGGTGCCCTCGGCACGTACTTTGATCGGTGCGCCGCGGCACCCGTCCTGACCGGTGCCCTCGGCACGTA

>NZ_AP022618|12|12|2394353-2394452|CRISPRCasFinder
CCGGGCCGCCGCCTCCGGCACGTA	CCCTGATCGGTGCCCTCGGCACGTACTTTGATCGGTGCGCCGCGGCACCCGT
CCTGACCGGTGCCCTCGGCACGTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022618.1\|WP_083033881.1\|2397779_2399426_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|173866
NZ_AP022618.1\|WP_083030577.1\|2404689_2405598_-\|class-A-beta-lactamase	unknown	unknown	gnl\|CDD\|185339
NZ_AP022618.1\|WP_083032584.1\|2385412_2385766_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022618.1\|WP_083032595.1\|2389334_2390270_+\|lytic-transglycosylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|381602
NZ_AP022618.1\|WP_083032593.1\|2388951_2389338_+\|DUF1304-domain-containing-protein	unknown	unknown	gnl\|CDD\|377753
NZ_AP022618.1\|WP_083030578.1\|2405594_2406869_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273456
NZ_AP022618.1\|WP_083032590.1\|2387286_2387880_+\|Holliday-junction-branch-migration-protein-RuvA	unknown	unknown	gnl\|CDD\|234645
NZ_AP022618.1\|WP_163787857.1\|2385740_2385842_+\|pentapeptide-repeat-containing-protein	unknown	unknown	unknown
NZ_AP022618.1\|WP_163787858.1\|2394517_2396341_+\|protein-translocase-subunit-SecD	unknown	unknown	gnl\|CDD\|235615
NZ_AP022618.1\|WP_110810993.1\|2400037_2402401_+\|RelA/SpoT-family-protein	unknown	unknown	gnl\|CDD\|213552
NZ_AP022618.1\|WP_083032587.1\|2385885_2386641_+\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|234640
NZ_AP022618.1\|WP_083030579.1\|2406934_2407828_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|223725
NZ_AP022618.1\|WP_083032596.1\|2390276_2393798_-\|carboxylic-acid-reductase	unknown	unknown	gnl\|CDD\|341287
NZ_AP022618.1\|WP_110810992.1\|2399380_2399947_+\|adenine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235028
NZ_AP022618.1\|WP_163787859.1\|2402844_2404440_+\|DUF222-domain-containing-protein	unknown	unknown	gnl\|CDD\|367155
NZ_AP022618.1\|WP_083032592.1\|2387887_2388955_+\|Holliday-junction-branch-migration-DNA-helicase-RuvB	unknown	unknown	gnl\|CDD\|234619
NZ_AP022618.1\|WP_083032598.1\|2394013_2394337_+\|preprotein-translocase-subunit-YajC	unknown	unknown	gnl\|CDD\|235636
NZ_AP022618.1\|WP_083032588.1\|2386726_2387290_+\|crossover-junction-endodeoxyribonuclease-RuvC	unknown	unknown	gnl\|CDD\|234587
NZ_AP022618.1\|WP_083033890.1\|2396477_2397776_+\|protein-translocase-subunit-SecF	unknown	unknown	gnl\|CDD\|237275
NZ_AP022618.1\|WP_083030580.1\|2407886_2408525_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293877

Protein	Function_ID	Function_description	E-value
NZ_AP022618.1\|WP_083030577.1\|2404689_2405598_-\|class-A-beta-lactamase	gnl\|CDD\|185339	PRK15442, PRK15442, beta-lactamase TEM; Provisional.	2.64243e-57
NZ_AP022618.1\|WP_110810992.1\|2399380_2399947_+\|adenine-phosphoribosyltransferase	gnl\|CDD\|235028	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional.	6.0783e-71
NZ_AP022618.1\|WP_083032595.1\|2389334_2390270_+\|lytic-transglycosylase-domain-containing-protein	gnl\|CDD\|381602	cd13399, Slt35-like, Slt35-like lytic transglycosylase. Lytic transglycosylase similar to Escherichia coli lytic transglycosylase Slt35 and Pseudomonas aeruginosa Sltb1. Lytic transglycosylase (LT) catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc) as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this this family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL).	5.97892e-23
NZ_AP022618.1\|WP_083032593.1\|2388951_2389338_+\|DUF1304-domain-containing-protein	gnl\|CDD\|377753	pfam06993, DUF1304, Protein of unknown function (DUF1304). This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.	3.5256e-27
NZ_AP022618.1\|WP_083030578.1\|2405594_2406869_-\|hypothetical-protein	gnl\|CDD\|273456	TIGR01129, Protein_translocase_subunit_SecD, protein-export membrane protein SecD. Members of this family are highly variable in length immediately after the well-conserved motif LGLGLXGG at the amino-terminal end of this model. Archaeal homologs are not included in the seed and score between the trusted and noise cutoffs. SecD from Mycobacterium tuberculosis has a long Pro-rich insert. [Protein fate, Protein and peptide secretion and trafficking].	7.89337e-34
NZ_AP022618.1\|WP_083032590.1\|2387286_2387880_+\|Holliday-junction-branch-migration-protein-RuvA	gnl\|CDD\|234645	PRK00116, ruvA, Holliday junction branch migration protein RuvA.	1.7348e-76
NZ_AP022618.1\|WP_083030579.1\|2406934_2407828_-\|peptidylprolyl-isomerase	gnl\|CDD\|223725	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones].	2.57319e-47
NZ_AP022618.1\|WP_163787858.1\|2394517_2396341_+\|protein-translocase-subunit-SecD	gnl\|CDD\|235615	PRK05812, secD, preprotein translocase subunit SecD; Reviewed.	1.03366e-126
NZ_AP022618.1\|WP_110810993.1\|2400037_2402401_+\|RelA/SpoT-family-protein	gnl\|CDD\|213552	TIGR00691, PppGpp_synthetase., (p)ppGpp synthetase, RelA/SpoT family. The functions of E. coli RelA and SpoT differ somewhat. RelA (EC 2.7.6.5) produces pppGpp (or ppGpp) from ATP and GTP (or GDP). SpoT (EC 3.1.7.2) degrades ppGpp, but may also act as a secondary ppGpp synthetase. The two proteins are strongly similar. In many species, a single homolog to SpoT and RelA appears reponsible for both ppGpp synthesis and ppGpp degradation. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species. [Cellular processes, Adaptations to atypical conditions].	0
NZ_AP022618.1\|WP_083032587.1\|2385885_2386641_+\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|234640	PRK00110, PRK00110, YebC/PmpR family DNA-binding transcriptional regulator.	6.93837e-150
NZ_AP022618.1\|WP_083032596.1\|2390276_2393798_-\|carboxylic-acid-reductase	gnl\|CDD\|341287	cd17632, AFD_CAR-like, adenylation domain of carboxylic acid reductase (CAR). This family contains the adenylation domain of carboxylic acid reductase enzymes (CARs), and performs an equivalent function to that of the ANL superfamily of adenylating enzymes. It takes a carboxylic acid substrate and ATP, and produces an AMP-acyl phosphoester intermediate, releasing pyrophosphate. Kinetic analysis using various substrates shows that this enzyme has a broad but similar substrate specificity, preferring electron-rich acids. This suggests that attack by the carboxylate on the alpha-phosphate of adenosine triphosphate (ATP) is the step that determines the substrate specificity and reaction kinetics. CAR is an important enzyme for use as a biocatalyst providing regiospecific route to aldehydes from their respective carboxylic acids.	0
NZ_AP022618.1\|WP_163787859.1\|2402844_2404440_+\|DUF222-domain-containing-protein	gnl\|CDD\|367155	pfam02720, DUF222, Domain of unknown function (DUF222). This family is often found associated to the N-terminus of the HNH endonuclease domain pfam01844. The function of this domain is uncertain. This family has been called the 13E12 repeat family.	7.42337e-19
NZ_AP022618.1\|WP_083032592.1\|2387887_2388955_+\|Holliday-junction-branch-migration-DNA-helicase-RuvB	gnl\|CDD\|234619	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB.	0
NZ_AP022618.1\|WP_083032598.1\|2394013_2394337_+\|preprotein-translocase-subunit-YajC	gnl\|CDD\|235636	PRK05886, yajC, preprotein translocase subunit YajC; Validated.	8.01075e-55
NZ_AP022618.1\|WP_083033881.1\|2397779_2399426_+\|hypothetical-protein	gnl\|CDD\|173866	cd08501, PBP2_Lpqw, The substrate-binding domain of mycobacterial lipoprotein Lpqw contains type 2 periplasmic binding fold. LpqW is one of key players in synthesis and transport of the unique components of the mycobacterial cell wall which is a complex structure rich in two related lipoglycans, the phosphatidylinositol mannosides (PIMs) and lipoarabinomannans (LAMs). Lpqw is a highly conserved lipoprotein that transport intermediates from a pathway for mature PIMs production into a pathway for LAMs biosynthesis, thus controlling the relative abundance of these two essential components of cell wall. LpqW is thought to have been adapted by the cell-wall biosynthesis machinery of mycobacteria and other closely related pathogens, evolving to play an important role in PIMs/LAMs biosynthesis. Most of periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the LpqW protein. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	2.81576e-66
NZ_AP022618.1\|WP_083032588.1\|2386726_2387290_+\|crossover-junction-endodeoxyribonuclease-RuvC	gnl\|CDD\|234587	PRK00039, ruvC, Holliday junction resolvase; Reviewed.	1.76016e-79
NZ_AP022618.1\|WP_083033890.1\|2396477_2397776_+\|protein-translocase-subunit-SecF	gnl\|CDD\|237275	PRK13022, secF, protein translocase subunit SecF.	1.31736e-108
NZ_AP022618.1\|WP_083030580.1\|2407886_2408525_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293877	cd16322, TTHA1623-like_MBL-fold, uncharacterized Thermus thermophilus TTHA1623 and related proteins; MBL-fold metallo hydrolase domain. Includes the MBL-fold metallo hydrolase domain of uncharacterized Thermus thermophilus TTHA1623 and related proteins. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. This family includes homologs present in a wide range of bacteria and archaea and some eukaryota. Members of the MBL-fold metallo-hydrolase superfamily exhibit a variety of active site metallo-chemistry, TTHA1623 exhibiting a uniquely shaped putative substrate-binding pocket with a glyoxalase II-type metal-coordination mode.	1.56106e-30

>NZ_AP022618.1|WP_083032598.1|2394013_2394337_+|preprotein-translocase-subunit-YajC
MESIGVFLPLIVVMGAFMFFASRRQRKAMQATIDLHESLRVGDRVHTTAGLQATIVGIADDTVDLEIAPGVVTTWMKLAIRDKITPEDLNEDADTPREISESDAIPD
>NZ_AP022618.1|WP_083032596.1|2390276_2393798_-|carboxylic-acid-reductase
MPVASSPNEPAGTARLNRRISELYATDPQFAAARPDPEVAAAVDAPGLDLATIVNTVLTGYGDRPAVGERARRVVTDPATGRSTTTPAPHFDTLTYRELHDRVRAVTDALADTVAPGDRVAILGFTSVDYATVDLALIQLAAVSVPLQTSASAAALTPIIAETEPRVLAASVVDVAHAVDLIEAGPGPSRLVVFDIHDGDDDHRDALAAARARLHDSGVVVETLAEVIRRGRTAAPAEARTPAVGEDPLALLVYTSGSTGAPKGAMYPQSRAANMWRSNNSWQWDDLQATAPSIVLCFLPMSHVMGRGILYGALSAGGTAYFAARPDLSTLIEDLSLVRPTQLNFVPRIWDMLHQEWASERDRAGRLSPEAEAALMRTVSDRLIGNRYVLAITGSAPISPELRAWVETFLDLHLVEGYGSTEAGAVMVDGVLRRPPVTDYKLVDVPELGYLGTDRPYPRGELLLKSAQLFPGYYHRPEVSAGVLDDDGFYRTGDIFAETAPATLVYVDRRNNVLKLSQGEFVTLSKLEAAYLTSPLISQIYLYGNSARPYLLAVIVPTAEALAGDPSDLRGRLSESLKRVAAATELQSYEIPRDFLVETEPFTQANGLLTGIRKLAWPKLKERYGDALEALYAELSDGQAAELARLRTDGAAGPVAETVGRAAAALLGTAAADIAPDAHFTDLGGDSLSALTYSNLLHDIFGVDVPVGLIVSPATDLAAIAAHIEAARAGATRPSYDGVHGRDATVVRAADLTLDKFLPAETLSAAPGLPGPRSEVRTVLLTGATGFLGRYLALEWLERMDLVDGKLICLVRARSYTEAAARLDATFDSGDPELLAHYRELAADHLEVLAGDKGEENLGLDPTTWARLAADVDLIVDPAALVNHVLPYRQLFAPNALGTAELIRIALSTRIKPYLYVSTIGVGDGMAPGTFVEDADIRATSPTRAVDDSYANGYGNSKWAGEVLLREAHDLCGLPTAVFRCDMILADTSWAGQLNLPDMFTRMMLSLVATGIAPESFTELDPGGHRQPSHYDGLPVEFIAEAVSTLGTRLEPGEFVTYHVMNPYDDGIGMDEFVDWLIEAGYPISRVPDYQGWLDRFDTALRGLPDRQRQASLLPLLHNYTKPGVPQHGSLAPTEVFRAAVQDAKIGPDKDIPHVSREVIVKYATDLELLGLL
>NZ_AP022618.1|WP_083032595.1|2389334_2390270_+|lytic-transglycosylase-domain-containing-protein
MTSVRRRAPLVFAAAVAGLVGCTGPTAAAPATEIAAAPAPAAPVPAAPAVPVPVGIQPTLASDPAQLADDLVADERAVRDPSTPGPDRVVAARRQQAAYRAIVAHPDWDAVIRPRIPAELSEAYGRNLNAAQQLVALASVRDTLPAWIIRQPAPAEELLGYYREAEAASGVGWNYLAAVNLVETRFGRVNGASTAGAQGPMQFLPSTFAAYGNGGDIHAPRDAILAAGRYLAANGFVGDPDHALYRYNHSDHYVRAIGDYAAVLAADPAAFAGYYEWEVYCKTTAGDVLLPVGYAETAPVSAAEYVAAHPQ
>NZ_AP022618.1|WP_083032593.1|2388951_2389338_+|DUF1304-domain-containing-protein
MITAGLILAALAALLHVYIFVMESLTWTSPRTRATFGTTADEAQTTKALAFNQGFYNLFLAIVATVGIVAVASGHTAVGAALVFAGIGSMAAAALVLLLSSPERARAAITQGTLPVLGIAALLIGLLR
>NZ_AP022618.1|WP_083032592.1|2387887_2388955_+|Holliday-junction-branch-migration-DNA-helicase-RuvB
MSRFESEDPDESVERDVSPALTVGEGDIDAGLRPRSLAEFIGQPRVREQLQLVLEGAKNRGGTPDHILLSGPPGLGKTSLAMIIAAELGTSLRVTSGPALERAGDLAAMLSNLVEGDVLFIDEIHRIARPAEEMLYLAMEDFRVDVVVGKGPGATSIPLEVAPFTLVGATTRSGALTGPLRDRFGFTAHMDFYEPAELERVLARSAGILGIELGAEAGAEVARRSRGTPRIANRLLRRVRDYAEVRADGVITRDVAKAALAVYDVDELGLDRLDRAVLTALTRSFGGGPVGVSTLAVAVGEESSTVEEVCEPFLVRAGMIARTPRGRVATALAWTHLGLAPPPHAAGFSQAGLFE
>NZ_AP022618.1|WP_083032590.1|2387286_2387880_+|Holliday-junction-branch-migration-protein-RuvA
MIASVRGEIIDIALDHAIVEAAGVGYKVMATPSTLATLRRGEQARMVTAMIVREDSQTLYGFADAEARDLFSTLLSVSGVGPKIALATLAVYDVPTLRRALADGDVTALTRVPGIGKRGAERLILELKDKIGAAPVAAGAGPSGPVGVRGPVVEALTGLGFPAKQAEEACEKVLAETPDATTSLALRSALNLLGKNR
>NZ_AP022618.1|WP_083032588.1|2386726_2387290_+|crossover-junction-endodeoxyribonuclease-RuvC
MRVMGVDPGLTRCGLSVIEGGSGRQVTALDVDVVRTPSDAPLQTRLLRISDTVEHWMDTHRPDVIAIERVFANQNANTAMGTAQAGGVIALAAARRGIDVHFHTPSEVKAAVTGNGRADKAQVTTMITKILALQQKPTPADAADALALAICHCWRAPMIARMAEAEAEAKAAQAKRTYTARLKAARA
>NZ_AP022618.1|WP_083032587.1|2385885_2386641_+|YebC/PmpR-family-DNA-binding-transcriptional-regulator
MSGHSKWATTKHKKAVIDAKRGKMFAKLIKNIEVAARTGGGDPAGNPTLYDAIQKAKKSSVPNDNIERARKRGGGEEAGGADWQTITYEGYGPNGVAVLIECLTDNRNRAAGEVRVAMTRNGGNMADPGSVAYLFTRKGVVTCEKNDLSEDDVLMAVLDAGAEEVNDLGDVFEVISEPTDLVAVRTALQDAGIDYDSAEASFLPSVTVQADLETARKVLKLVDALEDSDDVQDVYTNIDIPDDVAAALDEE
>NZ_AP022618.1|WP_163787857.1|2385740_2385842_+|pentapeptide-repeat-containing-protein
MRTTIFSNISLNNAMLTGSSCSGARFRGGPART
>NZ_AP022618.1|WP_083032584.1|2385412_2385766_-|hypothetical-protein
MFEKMVVRKDAGAARRYYHPDFVMYSDGLRQDFAEFAASHDGVYATEISYAIEYDDEAWVEAPDRVAGRLWITTARPGEEPTRIEVVLIAAYRDGLIHRIWETTWPSWRSLGAFENY
>NZ_AP022618.1|WP_163787858.1|2394517_2396341_+|protein-translocase-subunit-SecD
MATAKTTVHPYRWLALFLVLLIGLYLLVFLTGDKQGKPKLGIDLQGGTRVTLTARTADGSKPSPDALKQAQQIIETRVNGLGVSGSEVVIDGENLVITVPGPDGREAQNLGQTAKLYIRPVVQSYPVTPQEQPQGEGAPAGTPSGEPAAPAGQPAAPAAPAEQPTAPAAPVAPAEQPAAPAAPAAPSAQPRPYPLDPAPTPTPNPEPAAPAPAAPAAGAPTAAPAPGAPATPEMPDPRKSRAELIQQYKQLRQSTNPLTLYLAAQVTAQLCGHDDPLAGNDDPALPLVTCSQDGKTVYVLKPSIISGEDIADASSGLDQQSSQYVVNLKFKGAAVDVWGDFTAANPGTQTAFVLDSQVVSAPAIREAIRGGNTQISGSFTATTAKELANVLKYGSLPLSFEASQAENVSASLGMYALRAGLIAGAVGLALVLLYSLLYYRALGLLVAVSLVASGAMVYAILVLLGRHIGYTLDLAGIAGLIIGIGMTADSFVVFFERIKDEIREGRSFRSAVPRGWARARKTIVSGNAVTFIAAAVLYVLAIGQVKGFAFTLGLTTILDVLVVFLVTWPLVYLASKTQIFAKPAFNGLGALQQVARERRADAATGRR
>NZ_AP022618.1|WP_083033890.1|2396477_2397776_+|protein-translocase-subunit-SecF
MDTSAVADEDATADADEADDADDGKDAPAKSKPAKPDADSPHHGFLSRLYTGTGGFEVIGKRRMWFMIGGAMVLIAIASIAIRGFTFGIDFAGGTKVSMPQGAGADQISTSQVADVFTRSVGSAPQSVVVAGSGNSATVQIRAEALDTQQTQKLTQDLFDAFHPKNPDGQVSKDAISTSDVSATWGGQITKKALLALVVFVAIVTAYITLRYERYMAAAAMATMFFDLIVTAGVYSMVGFEVTPATVIGLLTILGFSLYDTVIVFDKVEENTEGFEHSTRRTYAELANLAVNQTFMRSINTSLISVLPILALMVVAVWLLGVGTLQDLALVQLVGVVVGTYSSIFFATPLLVAMRERTDLVRTHTRRVLNRRAKAAGKGSAKSAADSGDTDDESGDADAGEKTPVGAGTGTSRPSRPSRPGRPTGKRNPRRA
>NZ_AP022618.1|WP_083033881.1|2397779_2399426_+|hypothetical-protein
MLLGRTRRRAVATALALTLVAAVLGGCGRNAGEIEYVVGGPLDTYNTNTVAGAASAGPQAFARVLTGFGYHGPDGQIIADHDFGTVSVVGRAPLVLDYQIAENAVYSDGVPVTCDDLVLAWAAQSGRFPDFDAASRAGYGDVASVDCQPGQKKARVAFINDRNFVDYMQLFSATSMMPSHILADTLGYGIVEAVQSGDVTRMGEVARAWNTTWALHPGVDLKAFPSSGPYRIDAVRDDGSVVLVANDRWWGLKPVTNQITVWPRAAEIQDRLDAGTVDVIDVPAGSSGTLTVPDGYTQLKSASAGIQQLIFAPVGVLSVIPARRALALCTPRDEIARDAETPVSNARLDAATDDALAAMENVPEAAPFGGSDPAAARASIGGQPLPVRIGYRTPNARLAAVVGDIAKACQPAGITVEDAAGDDIGPQSLSEGRIDALLAGTGGSTGGGSTGSSVFDAYQFHSANGNNLPRYINPKIDGIVAALAVSSDPKEQSRLLHDGAVALWTDMPTLPLYRLQRLLITSPKMSAVTPNPTRWSAGWNMDRWQRTK
>NZ_AP022618.1|WP_110810992.1|2399380_2399947_+|adenine-phosphoribosyltransferase
MERGLEHGPLAAHQVSDVGELIVELTRTVEDFPQPGVQFCDLSPLLADRHGLAAVTDALAEIGAGADLIAGIDARGFLLGAAVATRLGVGILAVRKGGKLPPPVFREEYRLEYGNAVLEIPAEGIDLTGRRVWIIDDVLATGGTVAATVRLLQTCGAAVAGAAVVLELTALDGRAAVAPLPVHSLARV
>NZ_AP022618.1|WP_110810993.1|2400037_2402401_+|RelA/SpoT-family-protein
MSDTDSSAVPPDVLDQPVPATAATPAEPTEPLRAATSASRRVRARLARRMTAQRNAFNPALEPLVTVHRTIYPKADVAILQRAYNIAEERHASQLRKSGDPYITHPLAVANILAELGMDTTTLVAALLHDTVEDTGYSLEQLTAEFGEEIGHLVDGVTKLDKVVLGSAAEGETIRKMIIAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMATVKWELEDLSFAILHPKRYDEIVRLVADRAPSRDTYLAKVRAEIVATLAASRITATVEARPKHYWSIYQKMIVKGRDFDDIHDLVGVRILCDEIRDCYAAVGVVHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVIGPDGKPLEVQIRTRDMHHTAEYGIAAHWRYKEAKGRNNVLHPHASAEIDDMAWMRQLLDWQREAADPGEFLESLRYDLAVAEIFVFSPKGDVFNLPAGSTPVDFAYAVHTEVGHRCIGARVNGRLVALERKLENGEVVEVFTSKAPNAGPSRDWQGFVVSPRAKAKIRQWFAKERREEALEAGKEAIAREVRRGGLPLQRLLNGESMATLARELRYTDVSALYTAVGEGHISARHVVQRLVALLGGDDAAADEIAERSTPSNYPVRQRSNDDTGVAVPGAPGTLTKLAKCCTPVPGDAILGFVTRGGGVSVHRTDCTNAAALQQQAERIIDVKWAPGPGSVFLVAIQVEALDRHRLLSDVTRVLADEKVNILSASVTTSDDRVAISRFTFEMGDPKHLGHVLNVVRNVEGVYDVYRVTSAA
>NZ_AP022618.1|WP_163787859.1|2402844_2404440_+|DUF222-domain-containing-protein
MTAAVCEVTGSAVGLDVFLDEFDGFVDRLIDQLAPVPVSVPAGAAGSVGLAPPVCIPVPAATAAGADIDRDATESHHGGGRTLFHLLDAPAGVVDEPRLLAVLKTGVAAVNLLHHLLATATVAAERAGIPTRRHLRCGADLLTGLGMAPAAAYRLARVGRAVPELPALTRAARVGGVGVEFADAVGKGLSHIRSRIELTDADAAEVIRKLMVQSTPAEVNRRARGIAIARVRAQQAAGATGTDPDADAGVPVAENADLNTMTLTHNDEGRVTATLDLDVVTGEELLAALDPLCRPVAEPDGSRDARPPSRRRADGFGQLLRDYLSGSTRPLSGGVLPHVSLIRPIPAVTPVAAGDGGQLCGHRPADPYVGPDPSAGWSDEFVDMLGYTGPISAATADLITCDCTLDVIHVDGNGAPLDVGRSQRLFPPHIRRALIARDRGCAFPGCGRHPSWCDGHHIRPWDPDGVTSLDNGVLLCRRHHTMIHHYGWQVYLGTDRHPWFIPPPDPAHPNRPREHLRSHTRRTLTALPAAA
>NZ_AP022618.1|WP_083030577.1|2404689_2405598_-|class-A-beta-lactamase
MTTSRRAVLTGVLAGIGGAVLACTPSRPDSPGSDAGAADRATAELGALERRFGGKLGLFALDTANGSTVSHRGDERFLMCSTVKTFIAATVLHRRLTEAGLLDRTIHYTPADILEWAPVTATHLYDGMTVAQLCEAMITQSDNTAANLLIATLGGPAVTQEFVRTLGDNISRMDRNETALNYPDGDKDTSTPAQLVSTLTRVALDDGLDPHGRELLTGWLKANTTGGETIRAGVPARWTVGDKTGSGFAGQANDIAVLWPPDRAPIVIAALTAPDDRASDQGKPTIAEATRIALRALGTEPA
>NZ_AP022618.1|WP_083030578.1|2405594_2406869_-|hypothetical-protein
MTDERPDPPAGYPPPGFSPPAPVPPGYPGAGHPGAGYPPAAHGGTEYGGDPIYPLSTRPSWLRRYLGTVAIIALAALYATVVLATADRWAGTPGQPGVQLTFSTATADGSAPTEDALQQTATTLGRRIADLELPHSDVRVDGTTLTVIAPDGSAEAIARVIPTGRLYIRPVVHTYPVTDDSRAPADQIGSGSGIDRVELIQQYKKLRQSTNPLTLYLAAQVTAQLCGHDDPLAGNDDPALPLVACAKDGKTVYILKPSIISGTDVVAATSGFDQQSGEYVVNLKFNGNAAVVWGDFTAANPGIQTAFVLDSQVVTAPMIREAIRGGTTLVSGSFTATDAKELASTLSTGALPLMLIEQSTQPTTLAGQPASAPLRYTLVGAGVLIALIAVGVLVTIVRRRPRLPADGPVAMADNWFPAPGPSSG
>NZ_AP022618.1|WP_083030579.1|2406934_2407828_-|peptidylprolyl-isomerase
MPTNEQRRAAAKRKLDRQLERREAKAKRQRTLAIGAAVLAVVVAAVASGTFWWLHREDNPGNSAEVDPTTVAEATANAEPENAGTGSLPKFTPSANLGGNCQYPATVKESAAKANKPPRTGKVPTDPAQVSVSMSTTAGNVGLMLDNAKSPCTVNSFVSLAQQGYFDDTPCHRLTTSPSLSVLQCGDPGGTGSGGPGYKFGNEYPTDQYPAGSPNLDKPVTYPRGTLAMANAGPNTNGSQFFLVYKDSQLPPQYTVFGTIDETGLATLDKIGAEGTANGTPDGKPKTDVKIKSVRVD
>NZ_AP022618.1|WP_083030580.1|2407886_2408525_+|MBL-fold-metallo-hydrolase
MSHVLISGFATGLFDTNCYLVAQAASGPVLVVDPGDDAVGTCEYYFAANDWAPAAVLLTNARPGHAAAAYDLAAGWDIPVYLHRGDRDLLAEGDYGEPDDVREVADGQQLDIGGVEVSVAHLGSPTPGSVAYRVTADTDEGPVPVVFSGDTLLLRAVGHDCDGAGDPDPDLVAAVAAKLMVLDEKTVVMPGHGSSTSIGAERRVNPHLKDLL

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Crispr_ID: NZ_AP022618_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022618_13

2738809-2738893

Orphan

Consensus_repeat	Method
GGCTCGTTGCTCGCCGCTCGACTTGTCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP022618_13

>merge|NZ_AP022618|13|2738809-2738893|CRISPRCasFinder
GGCTCGTTGCTCGCCGCTCGACTTGTCGGTGTCCTCCGGCCCGCCAAGCTCTTCGTGGCTCGTTCCTCGCCGCTCGACTTGTCGG

>NZ_AP022618|13|13|2738809-2738893|CRISPRCasFinder
GGCTCGTTGCTCGCCGCTCGACTTGTCGG	TGTCCTCCGGCCCGCCAAGCTCTTCGT
GGCTCGTTCCTCGCCGCTCGACTTGTCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022618.1\|WP_083030989.1\|2736016_2736400_-\|phage-holin-family-protein	unknown	unknown	gnl\|CDD\|224861
NZ_AP022618.1\|WP_083031009.1\|2734501_2734996_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|213767
NZ_AP022618.1\|WP_083031006.1\|2748880_2749903_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NZ_AP022618.1\|WP_083030972.1\|2750238_2751078_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|180300
NZ_AP022618.1\|WP_083030987.1\|2736662_2737109_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NZ_AP022618.1\|WP_083030975.1\|2746794_2747673_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224097
NZ_AP022618.1\|WP_163787702.1\|2731206_2732421_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022618.1\|WP_083030981.1\|2741998_2743063_-\|prenyltransferase	unknown	unknown	gnl\|CDD\|273702
NZ_AP022618.1\|WP_083030994.1\|2733475_2734378_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022618.1\|WP_083030978.1\|2745145_2745943_+\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|366932
NZ_AP022618.1\|WP_083030973.1\|2747674_2748847_-\|spermidine/putrescine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270308
NZ_AP022618.1\|WP_083030980.1\|2743052_2743790_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369777
NZ_AP022618.1\|WP_083031008.1\|2743783_2745022_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NZ_AP022618.1\|WP_083030992.1\|2734988_2735678_+\|nucleotidyl-transferase-AbiEii/AbiGii-toxin-family-protein	unknown	unknown	gnl\|CDD\|378065
NZ_AP022618.1\|WP_083030995.1\|2732433_2733195_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022618.1\|WP_083030983.1\|2738954_2741984_+\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NZ_AP022618.1\|WP_083030984.1\|2737969_2738800_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022618.1\|WP_083030990.1\|2735710_2735980_-\|YdeI/OmpD-associated-family-protein	unknown	unknown	gnl\|CDD\|379149
NZ_AP022618.1\|WP_083030986.1\|2737209_2737887_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293792
NZ_AP022618.1\|WP_083030977.1\|2746018_2746798_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224098

Protein	Function_ID	Function_description	E-value
NZ_AP022618.1\|WP_083030989.1\|2736016_2736400_-\|phage-holin-family-protein	gnl\|CDD\|224861	COG1950, COG1950, Predicted membrane protein [Function unknown].	5.52112e-20
NZ_AP022618.1\|WP_083031009.1\|2734501_2734996_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|213767	TIGR03070, couple_hipB, transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems. [Regulatory functions, DNA interactions].	4.48063e-06
NZ_AP022618.1\|WP_083031006.1\|2748880_2749903_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	2.87337e-157
NZ_AP022618.1\|WP_083030987.1\|2736662_2737109_+\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	3.61773e-26
NZ_AP022618.1\|WP_083030975.1\|2746794_2747673_-\|ABC-transporter-permease	gnl\|CDD\|224097	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism].	5.83024e-74
NZ_AP022618.1\|WP_083030981.1\|2741998_2743063_-\|prenyltransferase	gnl\|CDD\|273702	TIGR01577, Uncharacterized_glycosyl_hydrolase_MJ1610, oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (1), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.	3.87306e-11
NZ_AP022618.1\|WP_083030977.1\|2746018_2746798_-\|ABC-transporter-permease	gnl\|CDD\|224098	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism].	8.33059e-66
NZ_AP022618.1\|WP_083030978.1\|2745145_2745943_+\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|366932	pfam02136, NTF2, Nuclear transport factor 2 (NTF2) domain. This family includes the NTF2-like Delta-5-3-ketosteroid isomerase proteins.	4.39502e-12
NZ_AP022618.1\|WP_083030973.1\|2747674_2748847_-\|spermidine/putrescine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270308	cd13590, PBP2_PotD_PotF_like, The periplasmic-binding component of ABC transporters involved in uptake of polyamines; possess the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding domain that functions as the primary high-affinity receptors of ABC-type polyamine transport systems. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.17096e-89
NZ_AP022618.1\|WP_083031008.1\|2743783_2745022_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	3.97465e-60
NZ_AP022618.1\|WP_083030992.1\|2734988_2735678_+\|nucleotidyl-transferase-AbiEii/AbiGii-toxin-family-protein	gnl\|CDD\|378065	pfam08843, AbiEii, Nucleotidyl transferase AbiEii toxin, Type IV TA system. This family was recently identified as belonging to the nucleotidyltransferase superfamily. AbiEii is the cognate toxin of the type IV toxin-antitoxin 'innate immunity' bacterial abortive infection (Abi) system that protects bacteria from the spread of a phage infection. The Abi system is activated upon infection with phage to abort the cell thus preventing the spread of phage through viral replication. There are some 20 or more Abis, and they are predominantly plasmid-encoded lactococcal systems. TA, toxin-antitoxin, systems on plasmids function by killing cells that lose the plasmid upon division. AbiE phage resistance systems function as novel Type IV TAs and are widespread in bacteria and archaea. The cognate antitoxin is pfam13338.	3.11313e-12
NZ_AP022618.1\|WP_083030983.1\|2738954_2741984_+\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NZ_AP022618.1\|WP_083030980.1\|2743052_2743790_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	8.50266e-22
NZ_AP022618.1\|WP_083030972.1\|2750238_2751078_+\|SDR-family-oxidoreductase	gnl\|CDD\|180300	PRK05875, PRK05875, short chain dehydrogenase; Provisional.	5.77885e-157
NZ_AP022618.1\|WP_083030990.1\|2735710_2735980_-\|YdeI/OmpD-associated-family-protein	gnl\|CDD\|379149	pfam13376, OmdA, Bacteriocin-protection, YdeI or OmpD-Associated. This is a family of archaeal and bacterial proteins predicted to be periplasmic. YdeI is important for resistance to polymyxin B in broth and for bacterial survival in mice upon oral, but not intraperitoneal inoculation, suggesting a role for YdeI in the gastrointestinal tract of mice. Production of the ydeI gene is regulated by the Rcs (regulator of capsule synthesis) phospho-relay system pathway independently of RcsA, and additionally transcription of the protein is regulated by the stationary-phase sigma factor, RpoS (sigma-S). YdeI confers protection against cationic AMPs (Antimicrobial peptides) or bacteriocins in conjunction with the general porin Omp, thus justifying its name of OmdA, for OmpD-Associated protein.	3.83564e-18
NZ_AP022618.1\|WP_083030986.1\|2737209_2737887_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293792	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) for which this fold was named perform only a small fraction of the activities included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases which can catalyze the hydrolysis of a wide range of beta-lactam antibiotics, hydroxyacylglutathione hydrolases (also called glyoxalase II) which hydrolyze S-d-lactoylglutathione to d-lactate in the second step of the glycoxlase system, AHL lactonases which catalyze the hydrolysis and opening of the homoserine lactone rings of acyl homoserine lactones (AHLs), persulfide dioxygenase which catalyze the oxidation of glutathione persulfide to glutathione and persulfite in the mitochondria, flavodiiron proteins which catalyze the reduction of oxygen and/or nitric oxide to water or nitrous oxide respectively, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J which has both 5'-3' exoribonucleolytic and endonucleolytic activity and ribonuclease Z which catalyzes the endonucleolytic removal of the 3' extension of the majority of tRNA precursors, cyclic nucleotide phosphodiesterases which decompose cyclic adenosine and guanosine 3', 5'-monophosphate (cAMP and cGMP) respectively, insecticide hydrolases, and proteins required for natural transformation competence. The diversity of biological roles is reflected in variations in the active site metallo-chemistry, for example classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, human persulfide dioxygenase ETHE1 is a mono-iron binding member of the superfamily; Arabidopsis thaliana hydroxyacylglutathione hydrolases incorporates iron, manganese, and zinc in its dinuclear metal binding site, and flavodiiron proteins contains a diiron site.	5.09661e-41

>NZ_AP022618.1|WP_083030984.1|2737969_2738800_+|hypothetical-protein
MPSSLHEVVVALMRQVPGFAMGLARRGGSSAAQNLTAREGAPDLSLATPTEQRADAVITLHDETGATALGIVAEVQLARDIRKPTRWLSYLASLHVRLGCPVILLIICTDDATARWAAGCGDLGGSVLLRPAVVGPSDIPVITDPDIARADLEMAMLSAFVHADEHRTLDAVFAALTPDDDRSPLYTDFLQSALPPAALTHLEHLMTATDWQYKGEFARTYFDQGKAEALLAVLTARGITVPDDERDRVRRCTDPNLLDTWLVKAATATTLTEVFG
>NZ_AP022618.1|WP_083030986.1|2737209_2737887_-|MBL-fold-metallo-hydrolase
MTVVSESYTGHVESGTAAVRRLPGATIIKASVGPMDNNAYLVTCTNTGKTLLIDAANDADTLAQLITEHTPDVALILTSHQHLDHWQALVPIAEMTGAPTASHELDADPLPVRPDRLIADGDTIDIGDLHFTAIHLRGHTEGSIALALDGDATGGVTQIFSGDCLFPGGVGKTWADGDFERLLGDVSTKLFDRYDDDAVIYPGHGDDTTLGAERPHLAEWRARGW
>NZ_AP022618.1|WP_083030987.1|2736662_2737109_+|universal-stress-protein
MSGYKTVLVGTDGSDSSLKAVDRAGSLASGPDAKVVVATAYFPSHEDSRAADILKDEGYKMAGNAPIYAILQEASERAKAAGATNVVERAIVGAPVDALVELSEEIDADLLIIGNVGLSTIAGRLLGSVPANVARKAKCDVLIVHTTN
>NZ_AP022618.1|WP_083030989.1|2736016_2736400_-|phage-holin-family-protein
MTAFLIRTSLVGFALWVVTLIVPGVKIVGGEGDTLKRIGIIFVVAVLFGLVNAVIKPIVQVLAIPLYILTLGLVHVVINALMLWITSWITDNTTHWGLHVYPFWWQAIWGAIVLSLVSWAISELIRG
>NZ_AP022618.1|WP_083030990.1|2735710_2735980_-|YdeI/OmpD-associated-family-protein
MTGEQVPGGVVHELPEDLRAELLTDPAVLAAWCDITVLARNEFICWVEDAKQPATRARRIRRTREELEEGKRRPCCWPGCKHREHTGKP
>NZ_AP022618.1|WP_083030992.1|2734988_2735678_+|nucleotidyl-transferase-AbiEii/AbiGii-toxin-family-protein
MFKRAHHLQIAVVLDALDSDLLAESSCYFGGGTAIALRYGEYRESVDIDFLVSDKSGYGQLRELVRRPKGFNALTRKPISAIRPVVADRYGIRTLLDVEGAPIRFEIVAEGRIELEPPSPGDNICGVATLTNLDMATTKLLANSDRWADQSVFSRDIIDLAMMAPDSTVMTRAIGKAETAYRSAVVGDLRNAIEYLRDNPHRLDDCIRELHMSGISKAELWNRIKRLNP
>NZ_AP022618.1|WP_083031009.1|2734501_2734996_+|helix-turn-helix-domain-containing-protein
MPARNPQVAERTQAWLSELGGQLRDRRRALGLSAATTAESAGMSRVTLHRIEAGSAAVTIGAYLNAAVALGLRLTLEDGLTNRVHAGPQTPDEQPPPETVRVGDFPQLRAIAWQLRAETTLSGVEALQLYERNWRHVDQSAMADAERALVRQLAHAYSRGTLLV
>NZ_AP022618.1|WP_083030994.1|2733475_2734378_+|hypothetical-protein
MESDFSDDQDGSTGDRFETVRRLAIEVLAQRGITVAPGDNDARGDDHLVDRDGYEYWLYNVQKKCALLQPHEWAHAVHEHFDHILQGRNAAPVTMLSDNDLQRQIRTRLNPPIPPEKMTSTYARPAFDGLVVELNRDLPTSVQTIVDQQLDGHDVDLLFQIGQRNTDAEPMDIERMDHGVVVLMGDSFFIASKVLNMPALIDTVFGGSAPLGVIFSVPQRSLVLLHAVGPQVMEALQWIVPVTIGQASEAAGPISPDTYYWHNGRVQRITQRNVDGDATGILIEGPFADAIDRVAAQAQG
>NZ_AP022618.1|WP_083030995.1|2732433_2733195_-|hypothetical-protein
MLWPASESWPTCENPWFYWDLDDSAAQPDEARPHTHPNPLVPVLQLFARDAPNLTYPPRADLLQVLWCPVTHAQLPGEEDAYSPAVLVKWRDSTTLLGAATDHPLPFDAEDELVAAPCALHPEQVDEYPIDLPQELWNRIDVAEDQGWNCGDDGVAYLSDLSVAPGTKAGGWPRWHSFDPYPMPCVACGRQLDLLIAFGTYERDDGVGHWDPPDISDLGLDDTTGLILGRGGDLQIFYCTTNPLHPVHSHVQG
>NZ_AP022618.1|WP_163787702.1|2731206_2732421_+|hypothetical-protein
MLIALATVFRDSDNLRAIAACDSFSDRCSRRISAQSSTVITLQTLKGAHFSTGTTCSLFDRSRQFYELAVAEDRVDTPANRMLRWVQLCAACRRGLGYWHAMTMSASHGVAQARYELGDLFGAANEALTVCNHRTTALGERHIDTLTSRLCAVMWQAEAAGLQAHTLENLDFLIGALDSVVGPDHPSTLVARFARVAWAPGDDIGDIDLLSEWEVLPEDLALVRGPDDPLTLTAEEQREVARGKWRNNVAEIRQIAYDLYIDMESEDDDYEEEDEDEGGVWTPGNLDEDTLEMVADNADEQASLVNDRFRTVVAVKRAYLRSARSSGAESLEALQWRYYLAWLLYGGQEWESAARRATALANDCGRLLEDGHPLAASCRELAQYAESHSRDPLPAYWQGDPGED
>NZ_AP022618.1|WP_083030983.1|2738954_2741984_+|excinuclease-ABC-subunit-UvrA
MADRLIVKGAREHNLRSVDLDLPRDALIVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSAYARQFLGQMDKPDVDFIEGLSPAVSIDQKSTNRNPRSTVGTITEVYDYLRLLYARAGSPHCPVCGEKIARQTPQQIVDQVLAMDEGLRFQVLAPVVRTRKGEFVDLFDKLNSQGYSRARVDGVVYPLTDPPKLKKQEKHDIEVVVDRLTVKASSKQRLTDSVETALNLADGIVVLEFVDREDDHPHREQRFSEKLACPNGHPLAVDDLEPRSFSFNSPYGACPECTGLGIRKEVDPDLVVPDPELTLAEGAVAPWSMGHTAEYFTRMMAGLGESMGFDVDTPWRKLPAKARNAILNGCDEQVHVRYKNRYGRTRSYYADFEGVLAYLQRRMEQTESEQMKERLEGFMRDVPCPECNGTRLKPEILAVTLAAGDLGAMSIAEVCALSIADCSNFLNALTLGPREQAIAGQVLKEVQSRLGFLLDVGLEYLSLERAAGTLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIASSDWVVDIGPAAGEHGGTVVHSGPYDELLTNPASITGAYLAGRESIEVPMVRRPVDHSRVLTVVGAREHNLRDIDVSFPLGVLTAVTGVSGSGKSTLVNDILATVLANKLNGARMVPGRHTRINGLNEVDKLVRVDQSPIGRTPRSNAATYTGVFDKIRTLFAATTEAKVRGYQPGRFSFNVKGGRCEACSGDGTLKIEMNFLPDVYVPCEVCHGARYNRETLEVHYKGKTIAEVLDLSIEEATEFFEPISSIHRYLKTLLDVGLGYVRLGQPAPTLSGGEAQRVKLAAELQKRSTGRTVYILDEPTTGLHFEDIRKLLKVINGLVDKGNTVIVIEHNLDVIKTADWLIDMGPEGGSGGGMVVAQGTPEDVAAVPESYTGKFLAEVLDGRGAPAQLTRAPAKKAPARKAPAKKAAAQKPAAQKAAAQKTTAKKAAPARAKKVTARG
>NZ_AP022618.1|WP_083030981.1|2741998_2743063_-|prenyltransferase
MLPDTPSVPGILSAQQCRDTADSIVAVQHRSGAIPWSAGGHTDPWDHVECAMALTAAGRLDAARAAYEWSRRTQRPDGSWPIQLRGDVVEDPHSDTNFCAYIAAGVWHHLLVTGDRDFAATMWPTVRRAIDFVLDLQRPGGEICWAHSVSGPIPEALVTGSASIQHSLRCALALADTLGESQPDWELAAGRLGHALTDHPELFTEKPHHSMDWYYPVLGGALRGAAAEERITDRWSEFVVEGLGIRCVDDRPWVTGAETCELALTLQAIGDVDRATELLANMQHLRERDGSYWTGLVYADGKRWPVERTTWTAAAVILAADALSDATGGAGLFRCDELPTVPVDGCDCARARAR
>NZ_AP022618.1|WP_083030980.1|2743052_2743790_-|class-I-SAM-dependent-methyltransferase
MLTVDFDRLGIGPGMRVIDVGCGAGRHSFEAYRRGADIVAFDQDEAELAGVATMFGAMADVGEAPASAQAQAVAGDALALPYPDGHFDVVIASEILEHVPADDAAIDELVRVLRPGGLLAVTVPRWLPERLCWLLSDDYHANEGGHVRIYRADALRDKITARGLACTHTHHAHALHSPYWWLKCAVGVENNEHPAVTAYHRLLVWDMMSAPLATRVAETALNPLIGKSVALYFRKPAAPGTDGAS
>NZ_AP022618.1|WP_083031008.1|2743783_2745022_-|glycosyltransferase-family-4-protein
MRIALLSYRSKTHCGGQGVYVRHLSRGLVDLGHHVEVFSGPPYPEGLDPRVRLTTVASLDLYREPDPFRTPRPSEIRTPIDALELATMWTAGFPEPRTFSLRAARLLADRRADFDVVHDNQCLGTGLLRIARAGLPVVATVHHPITRDRVVDLAAARWWRKPLVHRWYGFAEMQKKVARQIPDLLTVSTASADDIAEDFGVGRDQLQVVPLGVDTRLFAPGDQPRVRGRIIAIASADVPLKGVSNLLHAVAKLRSHRQVELQLVAKLENGGPTEKLIAELGISDVVRISSGLSDDELAGLLSSAEIACIPSLYEGFSLPAVEAMASGTPIVASRAGALPEVLGTPGDCAVLVAPGDIEELTYNLGELLDSPARRQRMGAAGRKRAVEVFSWPAVAAATAAVYRRAMDRCAPC
>NZ_AP022618.1|WP_083030978.1|2745145_2745943_+|nuclear-transport-factor-2-family-protein
MSVPAPAELLAVVEQSPAFAAAHDRSGWVNLFSDDGSVEDPVGSRRHTGHAAIGRFYDTFIGPRDIVFHRDLDIVAGSTVLRSLTLQVGMGGGVTMEIPAYLRYVVVESTGEPKIAELQAFWELPAMVWQFASNGIAALGPGLRLTRALLTNQNPVGALGFAAGARRPGARQRAALNTLTTALTRGDELAVRRILGRGVAVNLGDDTAVSADGIGALLRGATWTKHIAAGRYIAVAVRTDTARGVLIAEFGAGAQVVGLRYFTPS
>NZ_AP022618.1|WP_083030977.1|2746018_2746798_-|ABC-transporter-permease
MRGLGTLALRVSAALVLLFIFTPIFVIVAFSFNAPSGKFNYTWQGFTLDNWADPFKYPALTEALKMSLLVAGISTAIALVLGSLMAIAMARRRFRGSSLVETLLVLPLTAPEVVMGASLLTLFLDLGWASGPVTIVIAHVAFEISFIAMTVRARARGIDWSLEDAALDLGAGPVRTFATVTLPMVVPGVVAAAMLSFALSLDDFIITYFVSGSTVTYPLYVNAAVKAAVPPQINVLATAILVVSLVLLALGTLYRRKRL
>NZ_AP022618.1|WP_083030975.1|2746794_2747673_-|ABC-transporter-permease
MAGIATGTARRGSRFAPYLMIAPALIYLTVFFAVPMFSLLRTSLSTSSGSVFLPTLTFSWQFDNYTRALDTYSEQIMRSLGYALAATVISLLLSYPLAYTIAFKAGRYKNLLLGLVVLPFFVTFLIRTLAWKTILADDGFVVGALGSVGLLPSEGRLLSTSWAVIGGLVYNSMTFMVLPLYASLEKIDVRLLDAARDLYSTGPRVFGKVVLPLSMPGIVAGSLLVFIPAVGDFINADYLGSPRTTMIGNVIQKQFLVVKDYPVAAALSFVLMASILAGVLLYTRALGTKDLV
>NZ_AP022618.1|WP_083030973.1|2747674_2748847_-|spermidine/putrescine-ABC-transporter-substrate-binding-protein
MVDQSSRRPASRRSFLGGGAAAIAAAALGPSLLSACSSDNKTPAGTANTVVPDDGTPAAGLLRVSNWPNYMPAGFVDAFQHATGLQVQYREDFNDNEVWFSKYKADLAAHRDIGADLVVPTEFMALRLMNLGWLNQINRERVPNLANLRADLINSPADPGRTHIAPYLTGMVGLAYNKAATKRPITSVSDLWDPAFRGRVTMLADMQDGVGMVMQSQGNSPANPSTVTVQQAVDAIREQKDNGQIRRFTGNDYLDDLASGNVVVAQAYSGDIAGLGGDNPNLEFIIPDTGGMWYTDTMVIPYTTANQKAAEVWINYIYDRDNYAKIIEMNPSVPVLSDMTGALDKVDPKLSANPLINPSQQVRDRLVSWAALTDEQTQEYNTAYAAVTGG
>NZ_AP022618.1|WP_083031006.1|2748880_2749903_-|ABC-transporter-ATP-binding-protein
MSKRFGQRLAVDDVTASIGPGEFFSLLGPSGCGKTTTLRMIAGFDSPTGGSVRLDGRDVSHVPPHRRNVNTVFQHYALFPHMTVWKNVAYGPRSQGLDKAQIRRRVDEMLDVVQLTEYAGHRPGHLSGGQQQRVALARALVNYPTALLLDEPLGALDLKLRHEMQFELKRIQRELGITFVYVTHDQEEALTMSDRIAVMNGGRIEQIGTPTDIYERPASVFVAGFIGQANLWPAPWGTALAATVAGRAVPDGPATLMVRPERVRVSESGDPAHPVPATVVDLAFQGPVVRLALAAGDRSPVVAHVGPDQQLPLLRPGDPVHIGWAPEAALILPGVPEAPR
>NZ_AP022618.1|WP_083030972.1|2750238_2751078_+|SDR-family-oxidoreductase
MDISLTDRNYLVTGAGSGIGAGVAEAIAAAGGNVILLGRNAEKLAAAAEGVAAVSPRGAAATLVHPADVTDEDQVAAAVAAATGWHGRLDGVVNCAGGSETIGPITQIDSQLWRNTIDLNINGTMYLVKHAGREMVRGGGGSFVGISSIAATNTHRWFGAYGVAKLAMDHLMQLAADELGPSRVRFNSIRPGLTRTEMVAAIFAMPELSEDYRVNTPLPRVGEVVDIANLAVFLLSDQAGWITGQAINVDGGQMLRRGPDFSPLVSLMFSEDALRGVVE

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Crispr_ID: NZ_AP022618_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022618_14

4183126-4183225

Orphan

Consensus_repeat	Method
GGGACATGGAGATCTGGCTGCCGTCCTGGCAGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP022618_14

>merge|NZ_AP022618|14|4183126-4183225|CRISPRCasFinder
GGGACATGGAGATCTGGCTGCCGTCCTGGCAGTAACCCCGCTGGTCACCGAAAGCCCAGCACACCACGGGACATGGAGATCTGGCTGCCGTCCTGGCAGT

>NZ_AP022618|14|14|4183126-4183225|CRISPRCasFinder
GGGACATGGAGATCTGGCTGCCGTCCTGGCAGT	AACCCCGCTGGTCACCGAAAGCCCAGCACACCAC
GGGACATGGAGATCTGGCTGCCGTCCTGGCAGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022618.1\|WP_083029381.1\|4177698_4178631_+\|RNA-polymerase-sigma-70-factor	unknown	unknown	gnl\|CDD\|132002
NZ_AP022618.1\|WP_110810727.1\|4170261_4171188_-\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_AP022618.1\|WP_083029382.1\|4178765_4180037_+\|aminodeoxychorismate-synthase-component-I	unknown	unknown	gnl\|CDD\|235634
NZ_AP022618.1\|WP_083029378.1\|4173021_4174836_+\|methionine--tRNA-ligase	unknown	unknown	gnl\|CDD\|237012
NZ_AP022618.1\|WP_083029391.1\|4187344_4187575_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022618.1\|WP_083029379.1\|4174950_4176303_+\|NADP-specific-glutamate-dehydrogenase	unknown	unknown	gnl\|CDD\|181834
NZ_AP022618.1\|WP_083029431.1\|4180732_4181569_-\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|223390
NZ_AP022618.1\|WP_083029389.1\|4185901_4186552_-\|DUF5642-family-protein	unknown	unknown	gnl\|CDD\|376126
NZ_AP022618.1\|WP_083029385.1\|4183291_4183666_+\|heme-binding-protein	unknown	unknown	gnl\|CDD\|374603
NZ_AP022618.1\|WP_110810728.1\|4188283_4189117_-\|shikimate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|183587
NZ_AP022618.1\|WP_083029386.1\|4183668_4183977_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022618.1\|WP_083029376.1\|4171142_4172270_-\|resuscitation-promoting-factor	unknown	unknown	gnl\|CDD\|226111
NZ_AP022618.1\|WP_083029380.1\|4176523_4177702_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224172
NZ_AP022618.1\|WP_083029394.1\|4189127_4190114_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|237999
NZ_AP022618.1\|WP_083029377.1\|4172430_4173045_-\|YchF/TatD-family-DNA-exonuclease	unknown	unknown	gnl\|CDD\|272852
NZ_AP022618.1\|WP_083029390.1\|4186563_4187271_-\|DUF5642-family-protein	unknown	unknown	gnl\|CDD\|376126
NZ_AP022618.1\|WP_083029388.1\|4185301_4185898_+\|alpha-ketoglutarate-dependent-dioxygenase-AlkB	unknown	unknown	gnl\|CDD\|225687
NZ_AP022618.1\|WP_083029383.1\|4179978_4180716_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_AP022618.1\|WP_083029387.1\|4184003_4185221_-\|arginine-deiminase	unknown	unknown	gnl\|CDD\|234949
NZ_AP022618.1\|WP_110810720.1\|4187585_4188278_+\|LpqN/LpqT-family-lipoprotein	unknown	unknown	gnl\|CDD\|378485

Protein	Function_ID	Function_description	E-value
NZ_AP022618.1\|WP_083029381.1\|4177698_4178631_+\|RNA-polymerase-sigma-70-factor	gnl\|CDD\|132002	TIGR02957, putative_sigma_factor, RNA polymerase sigma-70 factor, TIGR02957 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building and bidirectional best hits, to represent a conserved family. This family is found in a limited number of bacterial lineages. This family includes apparent paralogous expansion in Streptomyces coelicolor A3(2), and multiple copies in Mycobacterium smegmatis MC2, Streptomyces avermitilis MA-4680 and Nocardia farcinica IFM10152.	9.35079e-113
NZ_AP022618.1\|WP_110810727.1\|4170261_4171188_-\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	6.70651e-127
NZ_AP022618.1\|WP_083029382.1\|4178765_4180037_+\|aminodeoxychorismate-synthase-component-I	gnl\|CDD\|235634	PRK05877, PRK05877, aminodeoxychorismate synthase component I; Provisional.	0
NZ_AP022618.1\|WP_083029378.1\|4173021_4174836_+\|methionine--tRNA-ligase	gnl\|CDD\|237012	PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed.	0
NZ_AP022618.1\|WP_083029379.1\|4174950_4176303_+\|NADP-specific-glutamate-dehydrogenase	gnl\|CDD\|181834	PRK09414, PRK09414, NADP-specific glutamate dehydrogenase.	0
NZ_AP022618.1\|WP_083029431.1\|4180732_4181569_-\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	gnl\|CDD\|223390	COG0313, COG0313, Predicted methyltransferases [General function prediction only].	2.02512e-115
NZ_AP022618.1\|WP_083029389.1\|4185901_4186552_-\|DUF5642-family-protein	gnl\|CDD\|376126	pfam18702, DUF5642, Domain of unknown function (DUF5642). This is a domain of unknown function found in actinobacteria.	3.59195e-60
NZ_AP022618.1\|WP_083029385.1\|4183291_4183666_+\|heme-binding-protein	gnl\|CDD\|374603	pfam16525, MHB, Haemophore, haem-binding. MHB is a coiled-coil molecule that binds free haem in mycobacterial cytoplasm to deliver it to membrane proteins for shuttling through the membrane.	1.13506e-39
NZ_AP022618.1\|WP_110810728.1\|4188283_4189117_-\|shikimate-5-dehydrogenase	gnl\|CDD\|183587	PRK12550, PRK12550, shikimate 5-dehydrogenase; Reviewed.	2.92117e-162
NZ_AP022618.1\|WP_083029376.1\|4171142_4172270_-\|resuscitation-promoting-factor	gnl\|CDD\|226111	COG3583, COG3583, Uncharacterized protein conserved in bacteria [Function unknown].	2.63809e-104
NZ_AP022618.1\|WP_083029380.1\|4176523_4177702_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|224172	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion].	2.31762e-70
NZ_AP022618.1\|WP_083029394.1\|4189127_4190114_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|237999	cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels.	1.2816e-14
NZ_AP022618.1\|WP_083029377.1\|4172430_4173045_-\|YchF/TatD-family-DNA-exonuclease	gnl\|CDD\|272852	TIGR00010, Uncharacterized_deoxyribonuclease_MG009, hydrolase, TatD family. PSI-BLAST, starting with a urease alpha subunit, finds a large superfamily of proteins, including a number of different enzymes that act as hydrolases at C-N bonds other than peptide bonds (EC 3.5.-.-), many uncharacterized proteins, and the members of this family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity. [Unknown function, Enzymes of unknown specificity].	1.06966e-83
NZ_AP022618.1\|WP_083029390.1\|4186563_4187271_-\|DUF5642-family-protein	gnl\|CDD\|376126	pfam18702, DUF5642, Domain of unknown function (DUF5642). This is a domain of unknown function found in actinobacteria.	3.37766e-35
NZ_AP022618.1\|WP_083029388.1\|4185301_4185898_+\|alpha-ketoglutarate-dependent-dioxygenase-AlkB	gnl\|CDD\|225687	COG3145, AlkB, Alkylated DNA repair protein [DNA replication, recombination, and repair].	2.11832e-36
NZ_AP022618.1\|WP_083029383.1\|4179978_4180716_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	6.7417e-13
NZ_AP022618.1\|WP_083029387.1\|4184003_4185221_-\|arginine-deiminase	gnl\|CDD\|234949	PRK01388, PRK01388, arginine deiminase; Provisional.	0
NZ_AP022618.1\|WP_110810720.1\|4187585_4188278_+\|LpqN/LpqT-family-lipoprotein	gnl\|CDD\|378485	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN. This family is conserved in Mycobacteriaceae and is likely to be a lipoprotein.	1.28523e-27

>NZ_AP022618.1|WP_083029431.1|4180732_4181569_-|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase
MTGGRLILGATPLGRPEDASARLCELLGSADVVAAEDTRRLRTLAAALGVTVTGRVISLFDANEAARVPALLAEISAGATVLTVSDAGMPLISDPGYRLVAAAVEAGMPVTCLPGPSAVTTALAVSGLPADRFCFEGFAPRRDGARRSWLAQLAAEPRTVVFFESPRRLPELLAVAAEVLGPDRRAVVCRELTKTHEEVVRGTLAELVDWAADGVLGEITVVLAGATPAADPDALVAEVNALVDDGMRVKDACAQVVAAHPGAPSRRALYQAVLQSRE
>NZ_AP022618.1|WP_083029383.1|4179978_4180716_-|alpha/beta-hydrolase
MSMPGLVLVHGGGFSADCWDPTIDAIRQAAPELGVLAVNLPGRAGRPAPPPGSVIDGWVDAVCIDIDTAGLDRVVVVGHSMAGLTVPRVVSRLGGSRVPETILAGAFVPPAGCTLADTLTGPFRFIARRYARTGRSRDVPVALARFGFTNGMTAAQRSFTLERMCTEPPSVLIEKAVNPGAPDGTISTWILTRRDRALSVRAQQRGIAALGGVDAVIPIDTGHMLMISAPDRLAQILLDSCRRYT
>NZ_AP022618.1|WP_083029382.1|4178765_4180037_+|aminodeoxychorismate-synthase-component-I
MHIERLADLGPAPAVLRRLSVATARRGLPGPAALTGDWFGSRALIAPSLATAECAPAAVFEAGPTIDGPPGAVGGGWLGYLSYPDPGADARGPRIPVAAGGWTDSLLRRDADGTWWYECLSGALMPGWLSGALAADEPDGDWHIDWHAPDPRAHRAGVLACLEAIAAGEVYQACVCTQFTGRLTGSAWAFFADAVAATDPARGAFLAGPWGAVASLSPELFLSRRGELLTSSPIKGTVAAAADPAALRASVKDVAENVMIVDLVRNDLSRVARTGSVTVTELLAIKPAPGVWHLVSTVTAQVAAAVPMRDVLEATFPPASVTGTPKRRARELLTGWEPHRRGIYCGTVGIASPLAGTELNVAIRTVEFDAVGRAVLGVGGGITADSDPDAEWDECLHKAAPTLELTCSDGSCRAESAPAGRAR
>NZ_AP022618.1|WP_083029381.1|4177698_4178631_+|RNA-polymerase-sigma-70-factor
MTGPDHPRRIDAEDQHAERFTLLRPLLFTIAYEILGSATDADDVLQDSYLRWAEVDLAQVRDTKSYLAQLVTRQALNALRAAGRRREDYVGPWLPEPLLVDRQQTAADAAEDVLLAESVSMAMLVVLETLSPDERAVFVLHDVFGFEHAEIASAIGKSAAAVRQLAHRARSHVQSRRRRFEPVDAAMSAELVTSFFAAAATGDVQTLMAMLAPDVVWTADSDGKASAARRPVRGAEQVARLVVGLVRLGGPGARVEPAMYNGAPAFVLYLDDRLEGVVTVELTDGLITNFYVMRNPEKLGGVLVPRPIGR
>NZ_AP022618.1|WP_083029380.1|4176523_4177702_+|FAD-dependent-oxidoreductase
MTAHTSIVVIGGGYAGVLAANRLQAHPDVTVTLINPRPEFVERIRLHQLAAGSDDAVAGFEQVLHPDIRLVVDTAVRIDAETARVSLASGGELDYDYLVYAVGSSFTAPQSVPGVDEFACSVAEFEQARRLRARLQALPAGAPIVVVGAGLTGIETAAELAELGRPVTLIGDTLAPSLGEGARAAVGRRLGKLGVALRLGPEVRRVDGHGVSLSDGSRIPAAITVWTAGFAVPQLAAESGLATDRIGRLLTDETLTSIDDERIVACGDAVNPSGVPLRMSCQAAIPLGAQAANTILARLAGTAPAPVDQAFTGQCISLGRRFGTVSIHHRDDSPRRAYIGGRTAAVIKELVCRTTITALRREARKPGSAFYFRGGEPIRAQRAATAAQLVTP
>NZ_AP022618.1|WP_083029379.1|4174950_4176303_+|NADP-specific-glutamate-dehydrogenase
MSNVLHEKLANLYEEVIRRNAGEREFHQAVHEVLDSLGPVVAKHPEYADTAVIRRLCEPERQIIFRVPWVDDAGVVQINRGFRVEFNSALGPFKGGLRFHPSVYLGIVKFLGFEQIFKNSLTGLPIGGGKGGSDFDPKGRSDGEIMRFCQSFMTELYRHLGEYTDVPAGDIGVGTREIGFLFGQYKRITNRYESGVLTGKGLTWGGSQVRTEATGYGTVFFIDEMLRAKGESFEGKRVLVSGSGNVAIYAIEKIHQLGGTVVGCSDSSGHVLDEKGIDVDVLREVKEVRRGRISDYVELRAGGASFIADNSIWDLGCDIAVPCATQNELTGAHAAALIRSGCKVVAEGANMPCTPEAVKLFNEAGVLFAPGKAANAGGVATSALEMQQNASRDSWTFEETEERLAEIMRRIHDRCLSTAEEYGQPGNYAFGANIAGFIRVADAMSALGLV
>NZ_AP022618.1|WP_083029378.1|4173021_4174836_+|methionine--tRNA-ligase
MQRDGGVHPLVPAGGGHRPARRVQVVGDGHDGLHADRGGPVADGADVVGVLRAAGVEVGVRVDQWCQRFRQRRWWTFGAHSRHHKVIPDMTEPFYVTTAITYPNGAPHIGHAYEYIATDAIARFRRLDGFDVRYLTGTDEHGLKMAQTAEAEGIPTAELARRNSDVFEALQRKLNISFDRFIRTTDSDHRAASQALWRKMADAGDIYLGSYAGWYSVRDEAYFAESETRLADDGTRVAISSGAAVTWTEEQTYFFRLSAYTDRLLAHYREHPEFIGPDARRNEIVSFVSGGLNDFSISRSSFDWGVPVPDDPSHVMYVWVDALTNYLTGVGYPDTSSELFRRYWPAALHMIGKDIIRFHAVYWPAFLMSAGVELPKRVFAHGFLLNSGEKMSKSIGNVVSPDALVDTFGVDPVRYFLLREVPFGQDGSYSEDAIIGRINSDLANEFGNLAQRCLSMVAKNLDGIVPEPGEFDADDLALLAEADGLLDRVRRHFDAPAMHLALEAIWLMLGSANRYFSAQEPWVLRRSDDPADQQRFNTVLYTTMEVVRIAALLVQPVMPTAADRLLDLLSQPADRRDFGALAVRLAPGTALPPPAAVFPRYQVD
>NZ_AP022618.1|WP_083029377.1|4172430_4173045_-|YchF/TatD-family-DNA-exonuclease
MYAAVALHPTRADALDDSARTELQRLADDERVVAVGETGMDLYWPGKLDGCADPDVQREAFAWHIELAKRIGKPLMIHNRDADDAVLEVLAAEGPPDNVIFHCFSSGPEMARRCVEAGWYISLSGSVSFRNARDLHAAVPLIPPELLLVETDAPFLTPHPYRGSGNEPYCLPYTVRALAHLLNRPASELAAESSANARRVYRIA
>NZ_AP022618.1|WP_083029376.1|4171142_4172270_-|resuscitation-promoting-factor
MNIVTKLHHSKSPALRGITGAALLTLGLAGGYAVAAHKTVTLTVDGTSTTVTTMRSTVADIISENGFTVGERDDVYPAADATVGDHGTIELRRSRPVQISLDGHDGGQQWTTAATVDGALAQLKMTDTAPVAANRAARVPLGGMALPVVSAKDVVLNDGGVSRTVHLAAPNVAGLLVAAGVPLEQNDRVTPAVSAPVTEGMQIQVTRIRMEKRVERAPLVPNAQRIEDPTMNMSRSVVQDPGTPGVQDVTYAVSTVNGVETGRLPVANAVITPARDSVLRVGAKPGTEVPPVTNGAAWDALASCESGGNWAINTGNGFYGGVQFDAGTWLAHGGGKYAPRADLATREEQIAIASKTQAVQGWGAWPVCSSRIGAR
>NZ_AP022618.1|WP_110810727.1|4170261_4171188_-|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MGRLAGVQLADRRALTIRLLGPAEIRALAAELGLRPRKSWGQNFVHDANTVRRIVAAAGVGPCDTVIEVGPGLGSLTLALLDAGANVLAVEVDPVLAGRLPQTLAERSPLPAPLTVVNTDVLTLRRGDLPASPEPTALVANLPYNIAVPALMTVLAEFPTVATVLIMVQLEVADRLAAEPGGRDYGVPSVKARFYGDVRRAGTVSPSVFWPVPRVDSGLVRIDRYDDPPWPTDPVFRDRLFRLIDVAFAQRRKTVRNALSGLAGSGEAAATLLREAGIDPSARAETLSVADFARLATLLPDDAVGDRA
>NZ_AP022618.1|WP_083029385.1|4183291_4183666_+|heme-binding-protein
MKKTPIRPAIVGALVLGAAGLFGTAAAGADPAGEPERPPNCTAADFAGIASGVAASTSAYLFTHPEVNDFYTGLHGRSSEEMPTAVREFFDAHPQEHAELRGIRQPLTDFRARCGYTGIEQSGE
>NZ_AP022618.1|WP_083029386.1|4183668_4183977_+|hypothetical-protein
MSNSSTRRARVAALLAMVSFAALPGVVLMPAGTANADVCASAGRRITVGGCANIADAVAPYAPAPSAYAPLPEDQPPPPPPAPNVRGCVGYNGRFVSANGCN
>NZ_AP022618.1|WP_083029387.1|4184003_4185221_-|arginine-deiminase
MAAVTAENGVPGADSEVGRLRAVMLHRPGAELLRLTPRNNDRLLFDGLPWVSRAQEEHDAFADLLRSRGVEVLLLGDLLTEAMSSGAARMHGISAAVDARRLGLPLAQELSAYLRTLDATELADVLMAGMTFTELPIDHSQSLVVRMHHGGDFVIDPLPNLLFTRDSSFWIGARVAITSLAMPARMRETSLTDLIYAHHPRFLGVRRAYESRSAPVEGGDVLLLGPGVVAVGVGERTTPAGAEALARSLFDDNLAHTVLAVPIAQERAQMHLDTVCTMVDVDAVVMYPNIVDTLAAYTIVRTGDGLRIGQARPFVEAAAEAMGIEKLRVIDTGLDAVTAEREQWDDGNNTLALAPGVVVGYERNSQTNARLADAGIEVLPIEASELGTGRGGPRCMSCPISRDPV
>NZ_AP022618.1|WP_083029388.1|4185301_4185898_+|alpha-ketoglutarate-dependent-dioxygenase-AlkB
MSVAVQGALFDSEHRRPLAGGAWIDVRPGWFDAPAALFDELLAAVDWRAERRRMYERTLDVPRLCSFVDLTTSEAPHPVLKGLRRRLNDAYAGELGEPFTTAGLCLYRDGDDSVAWHGDTIGRGRTADTMVAIVGLGAGRTFALRPRGGGSSLRIRHGHGDLLVMGGSCQRTWEHAIPKTSRAVGPRISIQFRPRGVR
>NZ_AP022618.1|WP_083029389.1|4185901_4186552_-|DUF5642-family-protein
MRTYAVVLLGAGLLAGCTTSSDTHADISKIAGVKASFGPEYKVNVVPVTGIDPARIGSGQKLPDGMVFDPPACAKLSENPSAPADLNGNMSSVIAEGGGVRYIVIATETSQPLPSNDPGPDCQKVNFAGNGVRGTVQVVDAPQIDNATTLGKHVVMQITNNGKPQTGETYTYTADFGDYRVLVTANPTVVPDKPTVPVDTERAKGLLTAGVAAITG
>NZ_AP022618.1|WP_083029390.1|4186563_4187271_-|DUF5642-family-protein
MRIVVIGVLMMALVGCGSPGPAPDAPTSSTATVAPTGIDPVRIKRIRAELPEGFEVADVAPDANLAGLAGYGRDWVADPPACAGLLGPRETAETRGLSASGTGGTVYVTVMPVSGDPVEAEPTDGGPPARGTAPLAEPAGDCSAWTMSYQHSTARVQPAEAPQIDGATTAGLRADSVTAVESAARTESTIRWLTAEHDDQLVAVTVITTPGNEEGPLTDDYAAGLLVKAVAVLHR
>NZ_AP022618.1|WP_083029391.1|4187344_4187575_+|hypothetical-protein
MATFKKYLIFQAMTLTFGIVGPIFLIVYFAAQPEPELRWMYFAGLTITTIDVLVALVLAGAEKDDAPVTHLDVIEL
>NZ_AP022618.1|WP_110810720.1|4187585_4188278_+|LpqN/LpqT-family-lipoprotein
MLTLSRIAATGFTAVAVLAASVACDKHPDTESPSSSTTSPASTAPVQTSTPVTTSPAVTAPSAGSLAAYAKANNLTLTELRHGDPGPKVDLPVPQGWKLVYDEPDAPFGALVLQKPTDPKIPGRIVMLMTKLGGKIDRDAIFAASNAEIIALPDFHGPQSPQTDTLAGFVTSQIGGLYQPDQQLIAQKTVVIPTDGGAYVLRLRASGNQEDAAAMMLATSEIDKKATITA
>NZ_AP022618.1|WP_110810728.1|4188283_4189117_-|shikimate-5-dehydrogenase
MRPTLNKDTVLCISLAARPSNIGTRFHNYLYDRLGLDFLYKACTTTDLPAAIGGVRALNIRGCSVSMPFKQDALSLVDRIEPSAAAIGAVNTIVNDGGELTAANTDYLAIEALIAEYGLDPDRSVLIRGSGGMAAAVATAFRDSGFHHGVLVARNTVAGPELAERLGYHWRHHPGGASGSIIVNVTPIGMAGGPEESESAFGPGTIAAADTVFDVVALAAGPAGETPLIAAARAAGKQVITGTEVIARQAAEQFERYTGVRPSPELIAEASAYSRQT
>NZ_AP022618.1|WP_083029394.1|4189127_4190114_-|GNAT-family-N-acetyltransferase
MSESENGRAEALARLDVFADCTASDLVPLARLLRPLRAAAGEVLMVQGEPADEFLIIAEGSVAITREPRDESDPPLIADAGRILGELALLRHSPRSATVTAITALAGWSGDDAAFDLLIELPGVLERLERTARQRLAAFITPVPVRLSDGRELLLRPVLPGDRARTEHSHITFSSDTFYRRFQTVRQPGQKLMRYLFVVDYVDHFVWVVVTPDGDLVADARFVRDEDDRTRAEIAFLVGDDYQGQGIGTFLMGALAIAARVAGVTRFHARVLTDNLPMRAILDRAGAQWKRDDLHMVTTEIAVPQEVPIDDDTARGIEAMAVRVLREL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_AP022618_13	13.1\|2738838\|27\|NZ_AP022618\|CRISPRCasFinder	2738838-2738864	27	MK301532	Escherichia phage vB_EcoP-Ro45lw, complete genome	27791-27817	5	0.815
NZ_AP022618_2	2.1\|356375\|35\|NZ_AP022618\|CRISPRCasFinder	356375-356409	35	NC_049473	Arthrobacter phage Kuleana, complete genome	35433-35467	7	0.8
NZ_AP022618_11	11.1\|2211173\|32\|NZ_AP022618\|CRISPRCasFinder	2211173-2211204	32	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	1226193-1226224	7	0.781
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP040819	Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence	372523-372554	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP016613	Ralstonia solanacearum FJAT-91 plasmid unnamed1, complete sequence	1903982-1904013	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP021449	Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence	691890-691921	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	CP023013	Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence	737576-737607	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP049790	Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence	1286514-1286545	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP049794	Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence	1385333-1385364	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP049788	Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence	1090914-1090945	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP022766	Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence	810606-810637	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP039340	Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence	299712-299743	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP021763	Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence	833757-833788	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	835876-835907	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP015116	Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence	990418-990449	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP016555	Ralstonia solanacearum FJAT-1458 plasmid plas1, complete sequence	565584-565615	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP049792	Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence	1160494-1160525	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP052069	Ralstonia solanacearum strain FJAT91.F50 plasmid Plas1, complete sequence	726931-726962	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP016915	Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence	1883196-1883227	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP016905	Ralstonia solanacearum strain KACC 10709 plasmid unnamed1	297385-297416	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP022769	Ralstonia solanacearum strain T60 plasmid unnamed, complete sequence	816143-816174	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP015851	Ralstonia solanacearum strain YC40-M plasmid, complete sequence	1140427-1140458	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP022783	Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence	740983-741014	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP022791	Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence	642310-642341	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP022795	Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence	739582-739613	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP052071	Ralstonia solanacearum strain FJAT454.F1 plasmid Plas1, complete sequence	927508-927539	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP022482	Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence	338001-338032	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP009763	Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence	724726-724757	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP022779	Ralstonia solanacearum strain SL3882 plasmid unnamed, complete sequence	816132-816163	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP052075	Ralstonia solanacearum strain FJAT448.F1 plasmid Plas1, complete sequence	927475-927506	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP052085	Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence	789419-789450	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP052095	Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence	833810-833841	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP052105	Ralstonia solanacearum strain FJAT15252.F1 plasmid Plas1, complete sequence	927476-927507	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP021765	Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence	833796-833827	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP052077	Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence	711291-711322	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP052087	Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence	789419-789450	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP052097	Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence	833810-833841	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP052115	Ralstonia solanacearum strain FJAT1463.F50 plasmid Plas1, complete sequence	927489-927520	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP052127	Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence	789419-789450	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP052079	Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence	711319-711350	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP052089	Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence	789423-789454	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP052093	Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence	833810-833841	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP052101	Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence	833810-833841	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP052099	Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence	833810-833841	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP052107	Ralstonia solanacearum strain FJAT15249.F50 plasmid Plas1, complete sequence	927489-927520	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP022781	Ralstonia solanacearum strain SL3822 plasmid unnamed, complete sequence	1221781-1221812	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP052117	Ralstonia solanacearum strain FJAT1463.F1 plasmid Plas1, complete sequence	927478-927509	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP052125	Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence	711319-711350	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP022793	Ralstonia solanacearum strain SL2729 plasmid unnamed, complete sequence	744106-744137	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP022785	Ralstonia solanacearum strain SL3730 plasmid unnamed, complete sequence	724802-724833	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP022787	Ralstonia solanacearum strain SL3300 plasmid unnamed, complete sequence	779929-779960	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP022756	Ralstonia solanacearum strain T117 plasmid unnamed, complete sequence	815318-815349	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP052129	Ralstonia solanacearum strain FJAT1303.F1 plasmid Plas1, complete sequence	1351350-1351381	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP052121	Ralstonia solanacearum strain FJAT1458.F1 plasmid Plas1, complete sequence	927478-927509	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP052123	Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence	711319-711350	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP052131	Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence	789419-789450	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	CP011998	Ralstonia solanacearum strain YC45 plasmid, complete sequence	874621-874652	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP052073	Ralstonia solanacearum strain FJAT448.F50 plasmid Plas1, complete sequence	927472-927503	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP052081	Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence	711319-711350	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP052083	Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence	711319-711350	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP052109	Ralstonia solanacearum strain FJAT15249.F1 plasmid Plas1, complete sequence	927489-927520	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP052091	Ralstonia solanacearum strain FJAT15340.F6 plasmid Plas1, complete sequence	833812-833843	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP052111	Ralstonia solanacearum strain FJAT15244.F50 plasmid Plas1, complete sequence	1249468-1249499	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP052103	Ralstonia solanacearum strain FJAT15252.F50 plasmid Plas1, complete sequence	927500-927531	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP052119	Ralstonia solanacearum strain FJAT1458.F50 plasmid Plas1, complete sequence	927478-927509	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP052113	Ralstonia solanacearum strain FJAT15244.F1 plasmid Plas1, complete sequence	1249468-1249499	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_LR536451	Methylocella tundrae isolate MTUNDRAET4 annotated genome plasmid 2	87408-87439	8	0.75
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP040819	Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence	421288-421319	9	0.719
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP013110	Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence	1270559-1270590	9	0.719
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP021355	Rhodococcus sp. S2-17 plasmid pRB98, complete sequence	139234-139265	9	0.719
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP013054	Sinorhizobium americanum CCGM7 plasmid C, complete sequence	1140562-1140593	9	0.719
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NZ_CP029232	Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence	673546-673577	9	0.719
NZ_AP022618_7	7.1\|1551486\|32\|NZ_AP022618\|CRISPRCasFinder	1551486-1551517	32	NC_011879	Pseudarthrobacter chlorophenolicus A6 plasmid pACHL01, complete sequence	256010-256041	10	0.688
NZ_AP022618_11	11.1\|2211173\|32\|NZ_AP022618\|CRISPRCasFinder	2211173-2211204	32	NZ_CP006990	Rhizobium sp. IE4771 plasmid pRetIE4771d, complete sequence	490591-490622	10	0.688
NZ_AP022618_11	11.1\|2211173\|32\|NZ_AP022618\|CRISPRCasFinder	2211173-2211204	32	NZ_CP021127	Rhizobium sp. Kim5 plasmid pRetKim5c, complete sequence	455420-455451	10	0.688
NZ_AP022618_11	11.1\|2211173\|32\|NZ_AP022618\|CRISPRCasFinder	2211173-2211204	32	CP007644	Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803c, complete sequence	473018-473049	10	0.688
NZ_AP022618_11	11.1\|2211173\|32\|NZ_AP022618\|CRISPRCasFinder	2211173-2211204	32	MN033632	Leviviridae sp. isolate H2_Rhizo_Litter_49_scaffold_1384 RNA-dependent RNA polymerase (H2RhizoLitter491384_000001), hypothetical protein (H2RhizoLitter491384_000002), and hypothetical protein (H2RhizoLitter491384_000003) genes, complete cds	95-126	10	0.688

1. spacer 13.1|2738838|27|NZ_AP022618|CRISPRCasFinder matches to MK301532 (Escherichia phage vB_EcoP-Ro45lw, complete genome) position: , mismatch: 5, identity: 0.815

tgtcctccggcccgccaagctcttcgt	CRISPR spacer
agacctccggcccgacaagctcctcga	Protospacer
 * *********** *******.***

2. spacer 2.1|356375|35|NZ_AP022618|CRISPRCasFinder matches to NC_049473 (Arthrobacter phage Kuleana, complete genome) position: , mismatch: 7, identity: 0.8

---cagtcacgggtggtcccggtatcgctccggctccg	CRISPR spacer
gcggggtcac---tggtccgggtatcgctccggttccg	Protospacer
    .*****   ****** *************.****

3. spacer 11.1|2211173|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 7, identity: 0.781

cggctgtcacgcgctacggcgtcacgctcgtt	CRISPR spacer
ccgcgatgacgggcaacggcgtcacgctcgtc	Protospacer
* ** .* *** ** ****************.

4. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP040819 (Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
ggcgtccgcgaggacgaggcccggcagcgcca	Protospacer
  . ******** ************.*** *

5. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP016613 (Ralstonia solanacearum FJAT-91 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

6. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP021449 (Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

7. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to CP023013 (Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

8. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP049790 (Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

9. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP049794 (Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

10. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP049788 (Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

11. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP022766 (Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

12. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP039340 (Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

13. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP021763 (Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

14. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cagggccgcgatcacgaggcccgccggcggcg	Protospacer
*    ****** *********** *****.*

15. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP015116 (Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

16. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP016555 (Ralstonia solanacearum FJAT-1458 plasmid plas1, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

17. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP049792 (Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

18. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP052069 (Ralstonia solanacearum strain FJAT91.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

19. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP016915 (Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

20. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP016905 (Ralstonia solanacearum strain KACC 10709 plasmid unnamed1) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

21. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP022769 (Ralstonia solanacearum strain T60 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

22. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP015851 (Ralstonia solanacearum strain YC40-M plasmid, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

23. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP022783 (Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

24. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP022791 (Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

25. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP022795 (Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

26. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP052071 (Ralstonia solanacearum strain FJAT454.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

27. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP022482 (Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

28. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP009763 (Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

29. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP022779 (Ralstonia solanacearum strain SL3882 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

30. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP052075 (Ralstonia solanacearum strain FJAT448.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

31. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP052085 (Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

32. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP052095 (Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

33. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP052105 (Ralstonia solanacearum strain FJAT15252.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

34. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP021765 (Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

35. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP052077 (Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

36. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP052087 (Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

37. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP052097 (Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

38. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP052115 (Ralstonia solanacearum strain FJAT1463.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

39. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP052127 (Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

40. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP052079 (Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

41. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP052089 (Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

42. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP052093 (Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

43. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP052101 (Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

44. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP052099 (Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

45. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP052107 (Ralstonia solanacearum strain FJAT15249.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

46. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP022781 (Ralstonia solanacearum strain SL3822 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

47. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP052117 (Ralstonia solanacearum strain FJAT1463.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

48. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP052125 (Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

49. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP022793 (Ralstonia solanacearum strain SL2729 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

50. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP022785 (Ralstonia solanacearum strain SL3730 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

51. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP022787 (Ralstonia solanacearum strain SL3300 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

52. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP022756 (Ralstonia solanacearum strain T117 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

53. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP052129 (Ralstonia solanacearum strain FJAT1303.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

54. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP052121 (Ralstonia solanacearum strain FJAT1458.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

55. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP052123 (Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

56. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP052131 (Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

57. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to CP011998 (Ralstonia solanacearum strain YC45 plasmid, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

58. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP052073 (Ralstonia solanacearum strain FJAT448.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

59. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP052081 (Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

60. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP052083 (Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

61. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP052109 (Ralstonia solanacearum strain FJAT15249.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

62. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP052091 (Ralstonia solanacearum strain FJAT15340.F6 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

63. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP052111 (Ralstonia solanacearum strain FJAT15244.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

64. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP052103 (Ralstonia solanacearum strain FJAT15252.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

65. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP052119 (Ralstonia solanacearum strain FJAT1458.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

66. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP052113 (Ralstonia solanacearum strain FJAT15244.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cgctgccccgagcgcgaggcccggcggcgggc	Protospacer
* .* ** *****.***************. .

67. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_LR536451 (Methylocella tundrae isolate MTUNDRAET4 annotated genome plasmid 2) position: , mismatch: 8, identity: 0.75

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
attccccgcgatcacgaggcgcggcggcagcg	Protospacer
 **..****** ******** *******..*

68. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP040819 (Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence) position: , mismatch: 9, identity: 0.719

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
ggccgcggcgagcacgatgcccggcggcgaga	Protospacer
  .. * ********** ************

69. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP013110 (Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence) position: , mismatch: 9, identity: 0.719

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cttttccgcgagcgcgaagcccgcttcctgat	Protospacer
*************.***.***** .  * . *

70. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP021355 (Rhodococcus sp. S2-17 plasmid pRB98, complete sequence) position: , mismatch: 9, identity: 0.719

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
gaagttcgcgagcacggggcccggcgccgggt	Protospacer
    *.**********.********* **. *

71. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP013054 (Sinorhizobium americanum CCGM7 plasmid C, complete sequence) position: , mismatch: 9, identity: 0.719

cttttccgcgagcacgaggcccg----gcggcgact	CRISPR spacer
cttttccgcgagcgcgaagcccgcttcgtgat----	Protospacer
*************.***.*****    *.*..

72. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP029232 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence) position: , mismatch: 9, identity: 0.719

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
cttttccgcgagcgtgaggcccgcttcctgat	Protospacer
*************..******** .  * . *

73. spacer 7.1|1551486|32|NZ_AP022618|CRISPRCasFinder matches to NC_011879 (Pseudarthrobacter chlorophenolicus A6 plasmid pACHL01, complete sequence) position: , mismatch: 10, identity: 0.688

cttttccgcgagcacgaggcccggcggcgact	CRISPR spacer
agcaggcgcaagcacgatgcccggcggcgcca	Protospacer
  .   ***.******* *********** *

74. spacer 11.1|2211173|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP006990 (Rhizobium sp. IE4771 plasmid pRetIE4771d, complete sequence) position: , mismatch: 10, identity: 0.688

cggctgtcacgcgctacggcgtcacgctcgtt	CRISPR spacer
atctcgcagcgcgctacggcgacacgctggtt	Protospacer
   ..*. .************ ****** ***

75. spacer 11.1|2211173|32|NZ_AP022618|CRISPRCasFinder matches to NZ_CP021127 (Rhizobium sp. Kim5 plasmid pRetKim5c, complete sequence) position: , mismatch: 10, identity: 0.688

cggctgtcacgcgctacggcgtcacgctcgtt	CRISPR spacer
atctcgcagcgcgctacggcgacacgctggtt	Protospacer
   ..*. .************ ****** ***

76. spacer 11.1|2211173|32|NZ_AP022618|CRISPRCasFinder matches to CP007644 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803c, complete sequence) position: , mismatch: 10, identity: 0.688

cggctgtcacgcgctacggcgtcacgctcgtt	CRISPR spacer
atctcgcagcgcgctacggcgacacgctggtt	Protospacer
   ..*. .************ ****** ***

77. spacer 11.1|2211173|32|NZ_AP022618|CRISPRCasFinder matches to MN033632 (Leviviridae sp. isolate H2_Rhizo_Litter_49_scaffold_1384 RNA-dependent RNA polymerase (H2RhizoLitter491384_000001), hypothetical protein (H2RhizoLitter491384_000002), and hypothetical protein (H2RhizoLitter491384_000003) genes, complete cds) position: , mismatch: 10, identity: 0.688

cggctgtcacgcgctacggcgtcacgctcgtt	CRISPR spacer
gctcagtcacgccctacggcgtcacactgaaa	Protospacer
   * ******* ************.** .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

188527 : 231310

uncultured_Mediterranean_phage(14.29%)

protease,transposase,integrase,holin

attL 193886:193902|attR 222665:222681

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_083029246.1\|188527_189223_-\|protease	serine protease	NA	NA	NA	NA
WP_083029245.1\|189424_189934_+\|holin	phage holin family protein	NA	NA	NA	NA
WP_083029244.1\|189938_190892_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_083029243.1\|190894_192082_-\|protease	acid resistance serine protease MarP	A0A1B1IRD3	uncultured_Mediterranean_phage	1.1e-06	25.5
WP_083029242.1\|192078_192849_-	CoA pyrophosphatase	NA	NA	NA	NA
WP_083029241.1\|192895_193507_-	TlpA family protein disulfide reductase	NA	NA	NA	NA
WP_083029240.1\|193511_194246_-	endonuclease III	NA	NA	NA	NA
193886:193902	attL	NA	NA	NA	NA
WP_083029239.1\|194386_194680_+	hypothetical protein	NA	NA	NA	NA
WP_083029238.1\|194812_195487_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_083029237.1\|195483_196293_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_083029236.1\|196296_196752_-	RidA family protein	M1I5B0	Acanthocystis_turfacea_Chlorella_virus	5.8e-14	32.9
WP_110810711.1\|196759_196921_-	DUF4177 domain-containing protein	NA	NA	NA	NA
WP_083029235.1\|196968_197976_+	ArsA family ATPase	NA	NA	NA	NA
WP_083029234.1\|197978_199106_+	ArsA family ATPase	NA	NA	NA	NA
WP_083029233.1\|199158_199512_-	WhiB family transcriptional regulator	A0A0K1Y796	Mycobacterium_phage	9.7e-09	45.9
WP_083029232.1\|199784_202214_+	transglycosylase/D,D-transpeptidase PonA2	NA	NA	NA	NA
WP_083029231.1\|202252_203212_+	metallophosphoesterase	NA	NA	NA	NA
WP_163787717.1\|203226_203373_-	hypothetical protein	NA	NA	NA	NA
WP_067992226.1\|203719_204889_-\|integrase	site-specific integrase	A0A0E3XBN7	Gordonia_phage	3.5e-55	39.3
WP_062657835.1\|205057_205255_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_131805338.1\|207050_207518_+\|transposase	transposase	NA	NA	NA	NA
WP_133052865.1\|207523_208321_-	hypothetical protein	NA	NA	NA	NA
WP_062655116.1\|208863_209559_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_062655126.1\|209660_210173_+	PaaI family thioesterase	NA	NA	NA	NA
WP_062655117.1\|210169_210841_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_062655118.1\|210916_211381_+	hypothetical protein	NA	NA	NA	NA
WP_062655119.1\|211428_212478_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_078281697.1\|212659_213043_-	PaaI family thioesterase	NA	NA	NA	NA
WP_162291742.1\|213010_213244_+	hypothetical protein	NA	NA	NA	NA
WP_043985051.1\|213468_214137_-	transglutaminase domain-containing protein	NA	NA	NA	NA
WP_043985049.1\|214133_215234_-	BtrH N-terminal domain-containing protein	NA	NA	NA	NA
WP_043985048.1\|215505_216612_-	NDMA-dependent alcohol dehydrogenase	E3SJ82	Synechococcus_phage	5.0e-35	29.6
WP_078281965.1\|216658_218275_-	fatty acid--CoA ligase	NA	NA	NA	NA
WP_043985046.1\|218323_218734_-	SCP2 sterol-binding domain-containing protein	NA	NA	NA	NA
WP_043985045.1\|218933_220136_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_062655120.1\|220132_221521_-	cytochrome P450	NA	NA	NA	NA
WP_043985043.1\|221547_221868_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_165605269.1\|221990_223004_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
222665:222681	attR	NA	NA	NA	NA
WP_043985041.1\|223225_224734_+	carboxylesterase/lipase family protein	A0A0M4JT58	Mollivirus	7.8e-23	31.2
WP_011895438.1\|225120_225888_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_062655121.1\|225890_226703_+	TIGR03084 family protein	NA	NA	NA	NA
WP_011895440.1\|226699_228436_+	DUF1446 domain-containing protein	NA	NA	NA	NA
WP_062655122.1\|228849_229512_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_163787718.1\|229525_230089_+	hypothetical protein	NA	NA	NA	NA
WP_110810710.1\|230172_231310_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	4.4e-34	34.8

DBSCAN-SWA_2

1271667 : 1315668

Mycobacterium_phage(43.59%)

tail,transposase,capsid,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_083033363.1\|1271667_1271892_+	hypothetical protein	W8ECG1	Mycobacterium_phage	1.3e-11	64.0
WP_083033329.1\|1271884_1272466_+	3'-5' exonuclease	G1FGK6	Mycobacterium_phage	3.2e-33	46.9
WP_083033327.1\|1272462_1272726_+	hypothetical protein	NA	NA	NA	NA
WP_083033326.1\|1272725_1272959_+	hypothetical protein	NA	NA	NA	NA
WP_083033324.1\|1273237_1273570_+	hypothetical protein	A0A142K8T9	Gordonia_phage	2.7e-16	49.5
WP_083033323.1\|1273599_1274454_+	DUF2303 family protein	A0A076G8A4	Mycobacterium_phage	6.8e-64	51.4
WP_163787789.1\|1274450_1275326_+	hypothetical protein	A0A2P1A0S7	Gordonia_phage	1.5e-50	50.7
WP_083033981.1\|1275322_1275685_+	hypothetical protein	NA	NA	NA	NA
WP_083033980.1\|1275681_1276434_+	DUF2637 domain-containing protein	A0A0M4RSE0	Mycobacterium_phage	2.9e-50	48.4
WP_083033979.1\|1276430_1276697_+	hypothetical protein	NA	NA	NA	NA
WP_083033978.1\|1276693_1277272_+	phage Gp37/Gp68 family protein	A0A088F7U1	Mycobacterium_phage	2.8e-77	74.2
WP_163787790.1\|1277315_1278509_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	1.1e-35	34.3
WP_163787791.1\|1278551_1278755_-	hypothetical protein	NA	NA	NA	NA
WP_083033996.1\|1278894_1279296_+	DUF5131 family protein	A0A142K7I8	Mycobacterium_phage	4.9e-49	65.4
WP_083033998.1\|1279292_1279568_+	hypothetical protein	NA	NA	NA	NA
WP_083034000.1\|1279591_1279972_+	hypothetical protein	NA	NA	NA	NA
WP_110811002.1\|1280009_1280633_+	hypothetical protein	W0LJ01	Mycobacterium_phage	5.8e-65	59.3
WP_083034003.1\|1280569_1280995_+	DUF4326 domain-containing protein	A0A076G7F2	Mycobacterium_phage	1.5e-27	49.2
WP_163787792.1\|1280991_1281894_+	hypothetical protein	W8EHE1	Mycobacterium_phage	5.4e-11	43.3
WP_163787793.1\|1281886_1282111_+	hypothetical protein	NA	NA	NA	NA
WP_133053049.1\|1282107_1282425_+	hypothetical protein	A0A1B3B021	Gordonia_phage	7.9e-18	51.0
WP_163787794.1\|1282592_1283246_+	hypothetical protein	A0A088FRN2	Mycobacterium_phage	3.0e-27	39.9
WP_083033749.1\|1283637_1284051_+	hypothetical protein	NA	NA	NA	NA
WP_083033747.1\|1284052_1284358_+	HNH endonuclease	A0A1D8EQ93	Mycobacterium_phage	1.8e-27	65.9
WP_083033745.1\|1284360_1284705_+	hypothetical protein	NA	NA	NA	NA
WP_083033743.1\|1284676_1286107_+	DEAD/DEAH box helicase family protein	A0A142KAW2	Gordonia_phage	7.1e-175	66.3
WP_083033742.1\|1286103_1287561_+\|portal	phage portal protein	A0A159B6N0	Tsukamurella_phage	1.1e-167	65.3
WP_083033741.1\|1287565_1289224_+	hypothetical protein	A0A088FUW7	Mycobacterium_phage	2.9e-63	48.8
WP_083033740.1\|1290733_1291315_+	hypothetical protein	A0A159B6M6	Tsukamurella_phage	3.5e-11	55.9
WP_083033739.1\|1291365_1291740_+	potassium transporter	A0A159B6N5	Tsukamurella_phage	2.6e-44	70.2
WP_083033738.1\|1291743_1292766_+\|capsid	major capsid protein	A0A162E1S5	Tsukamurella_phage	2.0e-134	71.3
WP_083033737.1\|1292762_1293062_+	hypothetical protein	NA	NA	NA	NA
WP_163787795.1\|1293015_1293402_+	hypothetical protein	A0A159B6N2	Tsukamurella_phage	8.1e-25	50.8
WP_133053023.1\|1293398_1293752_+	hypothetical protein	NA	NA	NA	NA
WP_083033714.1\|1293753_1294014_+	hypothetical protein	A0A162E1T1	Tsukamurella_phage	2.7e-16	53.3
WP_083033712.1\|1294010_1294406_+	hypothetical protein	NA	NA	NA	NA
WP_083033710.1\|1294494_1295361_+	hypothetical protein	A0A159B6N7	Tsukamurella_phage	5.1e-67	48.8
WP_083033708.1\|1295456_1296020_+	hypothetical protein	A0A159B6N4	Tsukamurella_phage	7.7e-16	50.0
WP_083033707.1\|1296193_1296391_+	hypothetical protein	NA	NA	NA	NA
WP_133053022.1\|1296394_1296742_-	hypothetical protein	NA	NA	NA	NA
WP_083033705.1\|1296771_1301142_+	hypothetical protein	A0A159B6P7	Tsukamurella_phage	7.4e-106	30.8
WP_083033703.1\|1301141_1302251_+	hypothetical protein	A0A161BYL5	Tsukamurella_phage	1.2e-134	62.4
WP_083033702.1\|1302250_1303963_+	hypothetical protein	A0A159B6N9	Tsukamurella_phage	2.8e-274	78.8
WP_083033700.1\|1303959_1304334_+	hypothetical protein	A0A161C2F9	Tsukamurella_phage	1.9e-31	53.6
WP_163787796.1\|1304330_1305392_+\|tail	phage tail protein	A0A159B6N6	Tsukamurella_phage	1.5e-105	52.5
WP_083031833.1\|1305391_1305676_+	hypothetical protein	A0A159B6P6	Tsukamurella_phage	9.8e-20	51.7
WP_083031835.1\|1305659_1308254_+	hypothetical protein	A0A0F7DDA1	Mycobacterium_phage	7.0e-120	59.7
WP_110810890.1\|1308253_1309561_+	hypothetical protein	B3VM61	Mycobacterium_phage	7.0e-20	55.6
WP_083031841.1\|1309562_1310774_+	hypothetical protein	NA	NA	NA	NA
WP_083031843.1\|1310808_1311195_+	hypothetical protein	Q856D4	Mycobacterium_phage	2.1e-33	59.4
WP_083031844.1\|1311295_1312762_+	C39 family peptidase	A0A023W6V3	Mycobacterium_phage	1.2e-153	67.5
WP_083031845.1\|1312765_1313179_+	hypothetical protein	A0A097EYP2	Mycobacterium_phage	1.3e-15	40.6
WP_163787797.1\|1313175_1313343_+	hypothetical protein	NA	NA	NA	NA
WP_083031846.1\|1313339_1313783_+	hypothetical protein	F1B2P6	Tsukamurella_phage	2.2e-18	37.0
WP_083031847.1\|1313779_1314259_+	hypothetical protein	NA	NA	NA	NA
WP_083031883.1\|1314590_1315475_+	hypothetical protein	A0A142KCK8	Gordonia_phage	1.4e-99	64.9
WP_083031848.1\|1315458_1315668_+	hypothetical protein	A0A142KCK9	Gordonia_phage	2.6e-17	65.7

DBSCAN-SWA_3

3549496 : 3608886

Streptomyces_phage(11.76%)

tRNA,terminase,protease,capsid,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_083028792.1\|3549496_3552145_-\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	2.1e-140	38.1
WP_083028791.1\|3552227_3552830_-	DUF937 domain-containing protein	NA	NA	NA	NA
WP_083028914.1\|3552942_3554211_-	saccharopine dehydrogenase NADP-binding domain-containing protein	NA	NA	NA	NA
WP_083028790.1\|3554265_3555414_+	FAD-dependent monooxygenase	NA	NA	NA	NA
WP_083028789.1\|3555474_3555771_-	transglycosylase family protein	A0A1J0GVU2	Streptomyces_phage	1.1e-29	68.8
WP_083028788.1\|3556545_3557634_-	2-oxoacid:ferredoxin oxidoreductase subunit beta	NA	NA	NA	NA
WP_083028787.1\|3557679_3559617_-	2-oxoacid:acceptor oxidoreductase subunit alpha	NA	NA	NA	NA
WP_163787905.1\|3560064_3560337_-	hypothetical protein	NA	NA	NA	NA
WP_133052847.1\|3560405_3560696_-	hypothetical protein	NA	NA	NA	NA
WP_083028784.1\|3560823_3561783_+	2-hydroxyacid dehydrogenase	A0A1B1IVB5	uncultured_Mediterranean_phage	2.7e-13	27.9
WP_083028783.1\|3561863_3563138_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.7e-143	60.0
WP_083028782.1\|3563356_3564001_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A2H4JEX1	uncultured_Caudovirales_phage	5.2e-08	31.8
WP_083028781.1\|3563997_3564591_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	8.1e-40	50.3
WP_163787906.1\|3564693_3566088_-	trigger factor	NA	NA	NA	NA
WP_083028779.1\|3567049_3567271_-	DUF2945 domain-containing protein	NA	NA	NA	NA
WP_083028778.1\|3567663_3568218_-	PIN domain-containing protein	NA	NA	NA	NA
WP_163787907.1\|3568381_3568774_-	DUF4345 family protein	NA	NA	NA	NA
WP_163787908.1\|3568896_3570015_+	hypothetical protein	NA	NA	NA	NA
WP_133052845.1\|3570018_3570795_-	hypothetical protein	NA	NA	NA	NA
WP_083028773.1\|3570897_3571740_-	CDP-diacylglycerol diphosphatase	NA	NA	NA	NA
WP_083028772.1\|3571867_3573526_-	cation:proton antiporter	A0A2H4J178	uncultured_Caudovirales_phage	2.2e-10	28.1
WP_110810677.1\|3573596_3575162_-	AAE family transporter	NA	NA	NA	NA
WP_083028771.1\|3575243_3576047_-	Fpg/Nei family DNA glycosylase	A0A1V0CNR6	Kaumoebavirus	6.7e-13	25.8
WP_083028770.1\|3576055_3576535_-	ribose-5-phosphate isomerase	NA	NA	NA	NA
WP_083028769.1\|3576560_3577172_-	DsbA family protein	NA	NA	NA	NA
WP_083028768.1\|3577435_3577828_+	DUF732 domain-containing protein	NA	NA	NA	NA
WP_163787909.1\|3577855_3580453_+	aminopeptidase N	A0A2K9L1R3	Tupanvirus	4.9e-41	32.2
WP_083031402.1\|3580546_3581053_-	DUF5130 family protein	NA	NA	NA	NA
WP_083031404.1\|3581003_3581222_-	hypothetical protein	NA	NA	NA	NA
WP_083031459.1\|3581299_3581935_-	HNH endonuclease	H6WG01	Cyanophage	1.5e-20	37.7
WP_083031461.1\|3582109_3582505_+	globin	NA	NA	NA	NA
WP_083031464.1\|3582509_3583172_-	hypothetical protein	NA	NA	NA	NA
WP_083031462.1\|3583159_3583522_-	thioesterase	NA	NA	NA	NA
WP_110810870.1\|3583598_3588455_-	NAD-glutamate dehydrogenase	NA	NA	NA	NA
WP_083031405.1\|3588591_3590265_-	energy-dependent translational throttle protein EttA	A0A2K9L3Z8	Tupanvirus	7.1e-49	28.5
WP_083031466.1\|3590406_3590943_-	single-stranded DNA-binding protein	A0A1J0MCD2	Streptomyces_phage	1.3e-17	42.5
WP_083031407.1\|3591096_3591966_-	hypothetical protein	NA	NA	NA	NA
WP_083031408.1\|3591962_3594314_-	glycerol-3-phosphate 1-O-acyltransferase	NA	NA	NA	NA
WP_163787910.1\|3594310_3595999_-	HAD-IB family hydrolase	NA	NA	NA	NA
WP_083031410.1\|3595995_3597456_-	wax ester/triacylglycerol synthase family O-acyltransferase	NA	NA	NA	NA
WP_083031412.1\|3597610_3598756_-	alpha/beta hydrolase	A0A088FQA2	Mycobacterium_phage	6.1e-44	41.1
WP_083031413.1\|3599064_3600408_+	citrate:proton symporter	NA	NA	NA	NA
WP_083031414.1\|3600442_3602077_+	sensor histidine kinase	NA	NA	NA	NA
WP_083031415.1\|3602066_3602738_+	response regulator	NA	NA	NA	NA
WP_083031417.1\|3602969_3603179_-	hypothetical protein	NA	NA	NA	NA
WP_083031418.1\|3603175_3603523_-	Bro-N domain-containing protein	Q1A0E0	Mycobacterium_virus	3.9e-26	63.0
WP_083031421.1\|3604296_3605154_-\|capsid	phage major capsid protein	NA	NA	NA	NA
WP_083031423.1\|3605241_3605565_-	hypothetical protein	A0A222ZML1	Mycobacterium_phage	2.5e-19	49.0
WP_083031424.1\|3605561_3606017_-	hypothetical protein	NA	NA	NA	NA
WP_083031426.1\|3606013_3607396_-\|portal	phage portal protein	A0A161HSN6	Gordonia_phage	3.3e-28	28.8
WP_083031427.1\|3607422_3608886_-\|terminase	terminase	C7BGG7	Burkholderia_phage	3.1e-16	25.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_AP022618

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection