CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_AP022588	Mycolicibacterium sediminis strain JCM 17899	5 crisprs	csa3,DEDDh,casR,WYL,cas3,PD-DExK,cas4,DinG	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_AP022588_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022588_1

511125-511256

Orphan

Consensus_repeat	Method
GAAAGTGCGAGTGGACGCCTACGAAAAGCGACTCTCGTCG	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_AP022588_1

>merge|NZ_AP022588|1|511125-511256|CRISPRCasFinder
GAAAGTGCGAGTGGACGCCTACGAAAAGCGACTCTCGTCGACCGCCGCGCGCCCCCTCCACGACCGCCGCCGCGAGAGTTGCGTTTTGGCGGGAAAGTGCGAGTGGACGCCTACAAAAAGCGACTCTCGTCG

>NZ_AP022588|1|1|511125-511256|CRISPRCasFinder
GAAAGTGCGAGTGGACGCCTACGAAAAGCGACTCTCGTCG	ACCGCCGCGCGCCCCCTCCACGACCGCCGCCGCGAGAGTTGCGTTTTGGCGG
GAAAGTGCGAGTGGACGCCTACAAAAAGCGACTCTCGTCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022588.1\|WP_163795459.1\|500990_501956_-\|galactose-1-epimerase	unknown	unknown	gnl\|CDD\|185696
NZ_AP022588.1\|WP_163795463.1\|504911_506009_+\|galactose-1-phosphate-uridylyltransferase	unknown	unknown	gnl\|CDD\|238341
NZ_AP022588.1\|WP_163795473.1\|515577_516888_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|367049
NZ_AP022588.1\|WP_174266915.1\|508168_509434_+\|Mur-ligase-family-protein	unknown	unknown	gnl\|CDD\|223840
NZ_AP022588.1\|WP_163795467.1\|510194_511070_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380141
NZ_AP022588.1\|WP_163795475.1\|518954_520241_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|372371
NZ_AP022588.1\|WP_163795472.1\|514169_515549_+\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|223354
NZ_AP022588.1\|WP_163795476.1\|520683_521514_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227880
NZ_AP022588.1\|WP_163795460.1\|501963_502269_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022588.1\|WP_163795470.1\|512334_512667_-\|YbaB/EbfC-family-nucleoid-associated-protein	unknown	unknown	gnl\|CDD\|234669
NZ_AP022588.1\|WP_163795465.1\|507077_508067_-\|DEDDh-family-exonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|180377
NZ_AP022588.1\|WP_163795474.1\|516884_518906_-\|DNA-polymerase-III-subunits-gamma/tau	unknown	unknown	gnl\|CDD\|236090
NZ_AP022588.1\|WP_174266916.1\|512823_513642_+\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|223929
NZ_AP022588.1\|WP_163795466.1\|509484_510186_+\|glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|225974
NZ_AP022588.1\|WP_163795469.1\|511708_512320_-\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|234616
NZ_AP022588.1\|WP_163795462.1\|504129_504915_+\|DeoR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NZ_AP022588.1\|WP_163795471.1\|513638_514079_-\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|378454
NZ_AP022588.1\|WP_163795461.1\|502284_503991_-\|sodium/solute-symporter	unknown	unknown	gnl\|CDD\|271372
NZ_AP022588.1\|WP_163795468.1\|511299_511698_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022588.1\|WP_163795464.1\|506005_507091_+\|galactokinase	unknown	unknown	gnl\|CDD\|179063

Protein	Function_ID	Function_description	E-value
NZ_AP022588.1\|WP_163795459.1\|500990_501956_-\|galactose-1-epimerase	gnl\|CDD\|185696	cd09019, galactose_mutarotase_like, galactose mutarotase_like. Galactose mutarotase catalyzes the conversion of beta-D-galactose to alpha-D-galactose. Beta-D-galactose is produced by the degradation of lactose, a disaccharide composed of beta-D-glucose and beta-D-galactose. This epimerization reaction is the first step in the four-step Leloir pathway, which converts galactose into metabolically important glucose. This epimerization step is followed by the phosophorylation of alpha-D-galactose by galactokinase, an enzyme which can only act on the alpha anomer. A glutamate and a histidine residue of the galactose mutarotase have been shown to be critical for catalysis, the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. Galactose mutarotase is a member of the aldose-1-epimerase superfamily.	8.20571e-141
NZ_AP022588.1\|WP_163795463.1\|504911_506009_+\|galactose-1-phosphate-uridylyltransferase	gnl\|CDD\|238341	cd00608, GalT, Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.	3.10214e-129
NZ_AP022588.1\|WP_163795469.1\|511708_512320_-\|recombination-protein-RecR	gnl\|CDD\|234616	PRK00076, recR, recombination protein RecR; Reviewed.	5.76701e-112
NZ_AP022588.1\|WP_163795467.1\|510194_511070_-\|hypothetical-protein	gnl\|CDD\|380141	pfam18741, MTES_1575, REase_MTES_1575. Vsr REase Fold. Fused to HEPN (SWT1/Abi2 family), along with Transglutaminase and wHTH.	0.000164654
NZ_AP022588.1\|WP_163795475.1\|518954_520241_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|372371	pfam12897, Aminotran_MocR, Alanine-glyoxylate amino-transferase. These proteins catalyze the reversible transfer of an amino group from the amino acid substrate to an acceptor alpha-keto acid. They require pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze this reaction. Trans-amination reactions are of central importance in amino acid metabolism and in links to carbohydrate and fat metabolism. This class of aminotransferases acts as dimers in a head-to-tail configuration.	0
NZ_AP022588.1\|WP_163795472.1\|514169_515549_+\|FAD-binding-protein	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	3.42971e-34
NZ_AP022588.1\|WP_163795476.1\|520683_521514_+\|hypothetical-protein	gnl\|CDD\|227880	COG5593, COG5593, Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis].	0.000440008
NZ_AP022588.1\|WP_163795473.1\|515577_516888_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|367049	pfam02353, CMAS, Mycolic acid cyclopropane synthetase. This family consist of Cyclopropane-fatty-acyl-phospholipid synthase or CFA synthase EC:2.1.1.79 this enzyme catalyze the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid <=> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid.	6.06856e-128
NZ_AP022588.1\|WP_163795470.1\|512334_512667_-\|YbaB/EbfC-family-nucleoid-associated-protein	gnl\|CDD\|234669	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein.	2.6364e-38
NZ_AP022588.1\|WP_163795465.1\|507077_508067_-\|DEDDh-family-exonuclease	gnl\|CDD\|180377	PRK06063, PRK06063, DEDDh family exonuclease.	5.40838e-179
NZ_AP022588.1\|WP_163795474.1\|516884_518906_-\|DNA-polymerase-III-subunits-gamma/tau	gnl\|CDD\|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	0
NZ_AP022588.1\|WP_174266916.1\|512823_513642_+\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|223929	COG0860, AmiC, N-acetylmuramoyl-L-alanine amidase [Cell envelope biogenesis, outer membrane].	2.04428e-42
NZ_AP022588.1\|WP_163795466.1\|509484_510186_+\|glutamine-amidotransferase	gnl\|CDD\|225974	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only].	1.68868e-107
NZ_AP022588.1\|WP_163795462.1\|504129_504915_+\|DeoR-family-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	2.64963e-75
NZ_AP022588.1\|WP_163795471.1\|513638_514079_-\|SRPBCC-family-protein	gnl\|CDD\|378454	pfam10604, Polyketide_cyc2, Polyketide cyclase / dehydrase and lipid transport. This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily.	2.72065e-10
NZ_AP022588.1\|WP_163795461.1\|502284_503991_-\|sodium/solute-symporter	gnl\|CDD\|271372	cd11478, SLC5sbd_u2, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain. SLC5 (also called the sodium/glucose cotransporter family or solute sodium symporter family) is a family of proteins that co-transports Na+ with sugars, amino acids, inorganic ions or vitamins. Prokaryotic members of this family include Vibrio parahaemolyticus glucose/galactose (vSGLT), and Escherichia coli proline (PutP) and pantothenate (PutF) cotransporters. One member of the SLC5 family, human SGLT3, has been characterized as a glucose sensor and not a transporter. This subfamily belongs to the solute carrier 5 (SLC5) transporter family.	0
NZ_AP022588.1\|WP_174266915.1\|508168_509434_+\|Mur-ligase-family-protein	gnl\|CDD\|223840	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane].	1.35305e-64
NZ_AP022588.1\|WP_163795464.1\|506005_507091_+\|galactokinase	gnl\|CDD\|179063	PRK00555, PRK00555, galactokinase; Provisional.	3.98805e-167

>NZ_AP022588.1|WP_163795467.1|510194_511070_-|hypothetical-protein
MAEVFLGAEAVAAGRVTRHELRRWYRPMFRGVYLPTDEEPTLADRAVGAWLTTGRRGVIGGVAASALHGAPWVDPSHPIEVSGVVGRPQAGLVTRREHIADDEVTRRAGVPVTTRVRTAFDLGRHLSRAQAIARLDALMWNQKFSLDEVLALAERYPRTRGLRQLRELLPLVDGGSASPRESQTRLLLIDAGMPKPETQIPVVLGRNAVVFLDMGWEEFGVAVEYDGDHHRTDRRQYVKDVARLRKLEELGWIVIRVIAEDRPEDWLARVASALRSRGCHVDMYVAAALAA
>NZ_AP022588.1|WP_163795466.1|509484_510186_+|glutamine-amidotransferase
MRIGLVLPDVMGTYGDGGNSVVLRKRLQLRGIDAEVVEITLDDPVPAELDLYTLGGAEDFAQRLATKHLIRHPGLQQAAARGAPVLAICAAIQVLGHWYETSSGERVDGVGLLDVTTSPQPKRTIGEVVSQPLLPGLSDRLTGFENHRGGTDLGADASPLARVITGAGNRDGVGFDGVVQGSVIATYLHGPCLARNPQLADHMLAQVVGELPPLELSEVDRLRRERLAAPRRV
>NZ_AP022588.1|WP_174266915.1|508168_509434_+|Mur-ligase-family-protein
MERRSVSARGRLALGAGATARWASRLSGRGAGAMIGGLVAMTLDKSILAQLGANRRSVIVTGTNGKSTTTRMTAAALATIGPVATNAEGANMDAGLIAALAGSRDAGLAALEVDEMHVPHVADAVDPEVVVLLNLSRDQLDRVGEINHIERTLRGGLARHPNTVVIANCDDVLMTSAAYDSPNVVWVAAGGGWANDSVSCPRSGEVIVRDGAHWYSTGTMPQVGPGSPRTFERPTPQWWYDETHVHGPDGLCLPMALALPGTVNRGNATQAIAAAVTLGADPAAAVAAAEGVDEVAGRYSTIQVGGHTVRMLLAKNPAGWQEALSMVDTDAGSVVISVNGQVPDGEDLSWLWDVNFEHFVDHPVVAAGERATDLAVRLGYGGVAHTLVHDPLAAIASCPPGHVEVVANYTAFSQLSRAVKR
>NZ_AP022588.1|WP_163795465.1|507077_508067_-|DEDDh-family-exonuclease
MSIACGRPATEPGAGWAVVDVETTGFRPGQARIVSVAALAVGDDGNVEGSFSSLLNPGVDPGPTHVHGLTSEMLAGQPTFGDVVDDLKSVLQGRTMVAHNVAFDYSFLAAEAELIDAELPIDTVMCTVELARRLRLGSENLRLETLAAHCGVTQMRPHDALDDALVLAQILKPFLANAHERRTWLPVRSVSRRTWPNGHVTHEELHSLRTVAARLPCPHQNPGRFVRGRPLVQGMRVAMSTEVSHTYDELIERILHAGLAYTDSVDQQTSLVICDRPEPDQGKGYQAGEMGIPLVTDDDFMGLLNRVVGGRDVEPFVEPTSAGEQFTLF
>NZ_AP022588.1|WP_163795464.1|506005_507091_+|galactokinase
MISWAAPGRINLIGEHTDYNLGFALPIALPERTIARFAPADTDVLTVHSDHLDGAVDIRLDTRPGDVEGWAAYVAGVVWALRAAGHPVTGGTLRLTSTVLIGAGLSSSAALECATLGALTASGPELDRITSARIAQRAENEYVGAPTGLLDQLSSLFGEPRRALLIDFRDVTVEPVPFDPEAAGVTLLVINSHAVHEHAGGEYAARRTSCERAARDLGVASLREVCADDSLDPVRDPVDARRARHIVTENARVHDFVAAVRASDFAAAGRLMTESHASMRDDFEITTPHLDAIAASAVAAGAFGARMTGGGFGGCVIVLVPTDRAGSVTDAVEVAMRDGGYRAPTVTATHAAAGAGRVRTA
>NZ_AP022588.1|WP_163795463.1|504911_506009_+|galactose-1-phosphate-uridylyltransferase
MTEPLHWTLADGRDEFFFALPGHSASPVPDRRPLPPRVEKSSQVRFDRQTGQWVIIAALRQDRTYKPPPDQCPLCPGPSGDRSEIPAPAYDVVVFENRFPSLSGADAHTPFALPDEDGGGFIAAPGHGRCEVICFSSDHDASFAQLSPSHARLVVDAWQHRTADMLSRNGIEQVFCFENRGEDIGVTLTHPHGQIYGYPFLTPRTATVLRQADAHHRRTGGNMFADILATEVADGSRVIARNDWFTAFVPFAARWPVEVHVYPNRLVPNLIGLTDAERDAFAEIYLDVLGRFDRLYPTPLPYISALHQYTGVGAQREGYFHVELMSIRRSATKLKFLAGSESAMDAYISDVTPEAVAQRLREVAP
>NZ_AP022588.1|WP_163795462.1|504129_504915_+|DeoR-family-transcriptional-regulator
MLAAERRAAILRTLQAGGSVRVADLAFDLDVSEMTVRRDLDSLDAQSLLRKVHGGAVPRHNRGEEPWSSVKASQQRAEKAAIARAAAGTVEDGMTIALSAGTTTTELARLLRHRPSITVITNSLSVFAALTDPAGGDTATPQTYLSGGVRTPSDALVGPVADTTIASFRVDATYLGVHGFDPRVGLTSPNVSEAQVNRTLIDIGARLVVLADHTKYGEIGTNVFARLNRVDTLIVDDGLAETDRAVVAAEVGELRVADVVS
>NZ_AP022588.1|WP_163795461.1|502284_503991_-|sodium/solute-symporter
MTSTLVAESVLRLNVGFLDYSLIAIYFVFVLGIGYIARTQISTSLDFFLSGRKLPAWVTGLAFVSANLGAVEIMGMAANGAQIGLSTMHYYWIGAVPAMLFLGVVMMPFYYGSKVRSVPEFMRRRFGPGAHLVNAISFAVAQVLIAGVNLFLLATVINVLLGWNRWLSLIVAAVIVLTYTALGGLSAAIYNEVLQFFVIVAALVPLTIFGLIKVGGWNGLKDKLIDTVSDGTVTASVNEQLNTWPGEALSGFDSPVWSVVGIVFGLGFVLSFGYWTTNFVEVQRAMASDSMSSARRAPIIAAFPKMFIPFVVVLPGMIAAAAIGDMIDFKSAGTGDITYNDAMLLMIRDILPNGLLGVAIAGLLASFMAGMAANISAFNTVFSYDIWQTYLVKDRPDGYYIGVGRIATVAATVLAIFTALIAAGYSNLMDYLQTLFGFFNAPLFATFILGMFWKRMTPTAGWMGLVAGTLSAIGVFLLGEAGVINLPGQGVPFVAASAAFVVDIVVSVAVTMVTQPKPVAELAGLVYSQTDVDIFRDPDGAGKAWYQKAVPLASVALVLVIALNLLFH
>NZ_AP022588.1|WP_163795460.1|501963_502269_-|hypothetical-protein
MSDPSTPQSRFRLFDIRNIIGALLGIYGLLLTLAGVFPQLLSEHSDPAAERNRTDLYIGTDANWWVGLVLLAVAGLFFAWALLRPVVPDEPDTAEEHTQTT
>NZ_AP022588.1|WP_163795459.1|500990_501956_-|galactose-1-epimerase
MTDARRITLTSSSCTAVLTDLGARLLELHVPDANGVLADVVLARPAADVATDDTYMGAMVGRCANRIRDGVVEIDGRSIQLSRNEGDNHLHGGSRGFDRMVWETSREDVGEVTFSRVSPDGEEGYPGTLTVSATYRLAGTTLSVDVHATTDAPTIVNVVHHTYVNLAGHDAGTVADHSLQVRGSSYLPVDEAVLPTGEVRAVAGTPFDFRTPAPIGGRGVDIDHTWVLDGVGTREVAVLVDPRSGRRMAVTTDQPGLQVYAGGHLGGATAKGAGGAYRAGAGVALEAQHFPDAPNHRHFPSVELRPGEDYTSTVRFDFTAC
>NZ_AP022588.1|WP_163795468.1|511299_511698_-|hypothetical-protein
MADEEFKVEVELGSDEHGLSFWEKLRTLDLDDDARDRLGSKVTVTRDGDRVQIYTHTLADAQEAERTIRGLVADDHVGAEYAVTRWDGAAQEWVDPVDGDVVPDDAPETPAPDPSYVILEAYKPEFLRDLGL
>NZ_AP022588.1|WP_163795469.1|511708_512320_-|recombination-protein-RecR
MFEGPVQDLIDELGKLPGIGPKSAQRIAFHLLSVEPPDIDRLTAVLARVREGVTFCSVCGNVSDNERCRICSDPRRDAALICVVEEPKDVQAVERTREFRGRYHVLGGALDPLSGIGPDQLRIRELLNRIGERVDGVDVGEVIIATDPNTEGEATATYLVRMLRDIPGLSVTRIASGLPMGGDLEFADELTLGRALAGRRAMA
>NZ_AP022588.1|WP_163795470.1|512334_512667_-|YbaB/EbfC-family-nucleoid-associated-protein
MQPGQQPDMSALLAQAQQVQQQLMEAQESLANTEVHGQGGGGLVQVTMKGSGEVIGVAIDPKVVDPDDVETLQDLVVGAIKDASQQVTLMAQSKLGPLAGGLGGLGLPGA
>NZ_AP022588.1|WP_174266916.1|512823_513642_+|N-acetylmuramoyl-L-alanine-amidase
MRVGATASTRGRPVDPEPGRAAGRTRALTALAASVLAAASLVATPVATAAPSNIAGMIVFLDPGHNGSNDASISRQVPTGRGGTKDCQASGTSAGDGYPEHSFTWETTLRIRQQLTALGVRTAMSRGDDTGLGPCVDERAAMANALKPDAIVSIHADGGPATGRGFHVNYSAPPLNDAQAGPSVQFARVMRDQLQASGLVPATYIGQGGLLPRSDIAGLNLAQYPSVLVELGNMKNPADTALIESPDGRQKYAEAVVRGIAGFLATRPQRTI
>NZ_AP022588.1|WP_163795471.1|513638_514079_-|SRPBCC-family-protein
MGQVSASSTVLINAQPDAVFAAVADYRTVRPKILSSHYSGYQVLEGGQGAGTVAAWKLQATKSRSRDVKATVDVAGHAVIEKDANSTMVTNYTVAPAGTGSTVTVKTSWQGAGGIGGFFEKTFAPLGLRKIQAEVLENLKSELEKN
>NZ_AP022588.1|WP_163795472.1|514169_515549_+|FAD-binding-protein
MTVASIDAQSAHARGVERLLKSYRAIPRDATVRLAKSTSNLFRARAKATVKGLDTSGLTGVISVDPGARTADVAGMCTYEDLVAATLPYGLCPLVVPQLKTITLGGAVTGLGIESASFRNGLPHESVLEMDVLTGTGEIVTASREQNSDLFRAFPNSYGTLGYSVRLKIELEEVRPFVALRHLRFSSLVEMVATMDGIVETGAIDGTPVDYLDGVVFSADESYLTLGFRTGTTGPVSDYTGQDVYYRSIQHDSGVTHDRLTIHDYLWRWDTDWFWCSRAFGAQNPTIRRLWPRRYRRSAFYWKLIGYDQRFGIADRIEKRNGRPIRERVVQDVEVPIGRTVEFLDWFLANVPIEPIWLCPLRLRDDAGWPLYPIRPHHTYVNIGFWSSVPVGPDEGHTNKLIERAVSDLEGHKSLYSDAYYSKEEFDVLYGGERYRTVKKAYDPDSRLLDLYAKAVQRR
>NZ_AP022588.1|WP_163795473.1|515577_516888_+|class-I-SAM-dependent-methyltransferase
MTTYKDRLGAGTGKLTLAEILEIMAGDDLPVKFTAYDGSSAGPDGAAISIDLLTPRGTTYIATAPGELGLVRAYVSGDVEMLGAHPGDPYDLLVTLADKLNFKRPSPRVLANVVRSIGFEHLKPIAPPPQETVPRWRRIAEGLRHSKSRDADAIEHHYDVSNAFYEMVLGPSMTYTCACYSDADTSLEEAQENKYRLVFEKLRLQPGDRLLDVGCGWGGMVRYAARQGVNVIGVTLSKQQAEWAQKAIAEQGLSALAEVRHCDYRDVRESGFDAVSSIGLTEHIGVGNYPSYFTFLKSRLRTGGLLLNHSITRPDNRSGAAAKGFIDRYVFPDGELTGSGRLITEAQDAGLEVVHEENLRHHYAMTLRDWCRNLVENWDAAVAEVGLPTAKVWGLYMAGSRLGFEVNVIQLHQILAVKVDEKGGDGGLPLRPWWTA
>NZ_AP022588.1|WP_163795474.1|516884_518906_-|DNA-polymerase-III-subunits-gamma/tau
MALYRKYRPSSLAEVVGQEHVTEPLSNALTAGRINHAYLFSGPRGCGKTSSARIMARSLNCEKGPTPTPCGVCGSCVALAPNGPGNLDVTELDAASHNGVDDARELRDRAFYAPAESRYRIFIIDEAHMVTPQAFNALLKIVEEPPDHLIFVFATTEPEKVLTTIRSRTHHYPFRLLAPKTMRGLVEKICAQEDVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGARGNRVDYASALSLLGATDMALIDEAVDALAAGDAAALFGAVEAVIDAGHDPRRFATDLLDRFRDLIILQAVPDAAARGVVDAPADALERMRSQADRLGAATLARYAEVVHAGLGEMRGATAPRLLLEVVCARLLLPSASDTESALLQRIERLEMRLDVSIPAGEAAQSGATSAPAPSKQFARRSQVEPAAPESAPAAAPPPAAAIPPLPPVPVPVSQVAAAPAPAEPVAAPPPRPEPVERPAPVERPAPVERAPEPAVRPVERAPEPTPPVERPRVDPAPPSRPEPVAPAAAHVPAAGQPDAATVRSLWTTVREKVRERRRPTDVMLDGAIVVAVEKDTLVLSHVSGPLAKRLNEQRNVEIIRDALKDALGVNWNIRCEAGTPVGNPDPRAQRAGDVPMAPPPDVEDEESMLAEAQREDPAPRRDPEEVALELLQNELGARPIENR
>NZ_AP022588.1|WP_163795475.1|518954_520241_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MSFESLGRDDLQAQHDLQRRNYDDLQAKRLSLDLTRGKPSPAQLDLANDLLSLPGSGKDAYRDGDGTDTRNYGGLHGLPELRAIFGELLGIPVPNLIAGNNASLEMMHDIIVFSLLHGGVDSPRPWRDEPVVKFLCPSPGYDRHFAITESYGIEMIPVTMHEDGPDVDSIEELVAQDPAIKGMWCVPMYSNPTGTTYSWEVVRRLVQMETAATDFRLFWDNAYAVHTLTHEFLRQVDVLGLANAAGHPHRPLVFASTSKITFAGAGVSFFGGSLGNIAWYLQHAAKKTIGPDKLNHLRHLRFFGDADGVRLQMQRHQQLLAPKFALVAELLEDRLGESKIASWTEPKGGYFVSLDVLPGTAKRTVSLAKDAGIALTEAGASFPYRKDPEDKNIRIAPTFPSLPDLREAIDGLATCALLAATESLLARD
>NZ_AP022588.1|WP_163795476.1|520683_521514_+|hypothetical-protein
MRRWIAILWHASFLLIAGGLYFFFVLPRWFELLGDWSTTLGTSMRIVCGLLVALAALPVVFTWLRTRKPEYGTPQLALNLRTASIGLHVLAGVLIVGTAVSEIWLNLDDVGQWLFGIYGAAAAVALLGAFAFYLAFAAELPPPPPKPLKSSTQTRRRGRGKATETETDDADESQVDAADTVEVIEADGVAVDETTTETVHASQTATADETEPASDVTAASDEVTTVSDGNAEETADDKDSEENDSEENGKLRNRRPAGKSSSRLFRRSRGGVALDD

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Crispr_ID: NZ_AP022588_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022588_2

3748489-3748580

Orphan

Consensus_repeat	Method
CCGTCGGGGTTGGAGCCGCCGTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP022588_2

>merge|NZ_AP022588|2|3748489-3748580|CRISPRCasFinder
CCGTCGGGGTTGGAGCCGCCGTCGGCGGGGCCTTCGCCACCGGCCGAGCCGTCGGCGCCGCCGTCGTGGCCGCCGGGGTTGGAGCCGCCGTC

>NZ_AP022588|2|2|3748489-3748580|CRISPRCasFinder
CCGTCGGGGTTGGAGCCGCCGTC	GGCGGGGCCTTCGCCACCGGCCGAGCCGTCGGCGCCGCCGTCGTGG
CCGCCGGGGTTGGAGCCGCCGTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022588.1\|WP_163801908.1\|3740880_3741276_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022588.1\|WP_163798385.1\|3746283_3747165_-\|sucrase-ferredoxin	unknown	unknown	gnl\|CDD\|227101
NZ_AP022588.1\|WP_163798376.1\|3742067_3744053_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|366180
NZ_AP022588.1\|WP_163798373.1\|3741638_3742022_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022588.1\|WP_163798397.1\|3754824_3755148_-\|antibiotic-biosynthesis-monooxygenase	unknown	unknown	gnl\|CDD\|224278
NZ_AP022588.1\|WP_163798378.1\|3744155_3744386_-\|deoxyribodipyrimidine-photolyase	unknown	unknown	unknown
NZ_AP022588.1\|WP_163798401.1\|3759639_3760596_+\|TIGR03557-family-F420-dependent-LLM-class-oxidoreductase	unknown	unknown	gnl\|CDD\|274645
NZ_AP022588.1\|WP_163798390.1\|3748916_3750482_+\|phospholipase	unknown	unknown	gnl\|CDD\|197241
NZ_AP022588.1\|WP_163798394.1\|3753599_3754808_+\|cytochrome-P450	unknown	unknown	gnl\|CDD\|225035
NZ_AP022588.1\|WP_163798382.1\|3745094_3746279_+\|FAD-dependent-monooxygenase	unknown	unknown	gnl\|CDD\|236046
NZ_AP022588.1\|WP_163798386.1\|3747161_3748379_-\|cupin-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|369647
NZ_AP022588.1\|WP_163798371.1\|3740235_3740439_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235440
NZ_AP022588.1\|WP_163798370.1\|3739818_3740127_+\|DUF732-domain-containing-protein	unknown	unknown	gnl\|CDD\|368380
NZ_AP022588.1\|WP_163798391.1\|3750483_3752370_-\|Stk1-family-PASTA-domain-containing-Ser/Thr-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_AP022588.1\|WP_163801910.1\|3755156_3756182_-\|alcohol-dehydrogenase-catalytic-domain-containing-protein	unknown	unknown	gnl\|CDD\|176187
NZ_AP022588.1\|WP_163801911.1\|3756187_3756871_-\|DUF59-domain-containing-protein	unknown	unknown	gnl\|CDD\|366850
NZ_AP022588.1\|WP_163801912.1\|3758145_3759603_+\|Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_AP022588.1\|WP_174266836.1\|3744426_3745155_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_AP022588.1\|WP_163798399.1\|3756912_3757950_-\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|368185
NZ_AP022588.1\|WP_163801909.1\|3752463_3753495_-\|trypsin-like-peptidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|273938

Protein	Function_ID	Function_description	E-value
NZ_AP022588.1\|WP_163798399.1\|3756912_3757950_-\|amidohydrolase-family-protein	gnl\|CDD\|368185	pfam04909, Amidohydro_2, Amidohydrolase. These proteins are amidohydrolases that are related to pfam01979.	2.17311e-38
NZ_AP022588.1\|WP_163798376.1\|3742067_3744053_-\|MFS-transporter	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	6.31122e-17
NZ_AP022588.1\|WP_163798385.1\|3746283_3747165_-\|sucrase-ferredoxin	gnl\|CDD\|227101	COG4759, COG4759, Uncharacterized protein conserved in bacteria containing thioredoxin-like domain [Posttranslational modification, protein turnover, chaperones].	8.79704e-23
NZ_AP022588.1\|WP_163798394.1\|3753599_3754808_+\|cytochrome-P450	gnl\|CDD\|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	1.35307e-81
NZ_AP022588.1\|WP_163798397.1\|3754824_3755148_-\|antibiotic-biosynthesis-monooxygenase	gnl\|CDD\|224278	COG1359, COG1359, Uncharacterized conserved protein [Function unknown].	1.48127e-24
NZ_AP022588.1\|WP_163801910.1\|3755156_3756182_-\|alcohol-dehydrogenase-catalytic-domain-containing-protein	gnl\|CDD\|176187	cd05284, arabinose_DH_like, D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	3.86954e-155
NZ_AP022588.1\|WP_163798401.1\|3759639_3760596_+\|TIGR03557-family-F420-dependent-LLM-class-oxidoreductase	gnl\|CDD\|274645	TIGR03557, F420_G6P_family, F420-dependent oxidoreductase, G6PDH family. Members of this protein family include F420-dependent glucose-6-phosphate dehydrogenases (TIGR03554) and related proteins. All members of this family come from species that synthesize coenzyme F420, with the exception of those that belong to TIGR03885, a clade within this family in which cofactor binding may instead be directed to FMN. [Unknown function, Enzymes of unknown specificity].	0
NZ_AP022588.1\|WP_163798390.1\|3748916_3750482_+\|phospholipase	gnl\|CDD\|197241	cd09143, PLDc_vPLD1_2_like_bac_2, Catalytic domain, repeat 2, of uncharacterized bacterial proteins with similarity to vertebrate phospholipases, PLD1 and PLD2. Catalytic domain, repeat 2, of uncharacterized bacterial counterparts of vertebrate, yeast and plant phospholipase D (PLD, EC 3.1.4.4). PLDs hydrolyze the terminal phosphodiester bond of phospholipids with the formation of phosphatidic acid and alcohols. They also catalyze the transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. Instead of the regulatory C2 (calcium-activated lipid binding) domain in plants and the adjacent Phox (PX) and the Pleckstrin homology (PH) N-terminal domains in most mammalian and yeast PLDs, many members in this subfamily contain a SNARE associated C-terminal domain, whose functional role is unclear. Like other PLD enzymes, members in this subfamily contain two copies of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue), that may play an important role in the catalysis.	4.9195e-80
NZ_AP022588.1\|WP_163798382.1\|3745094_3746279_+\|FAD-dependent-monooxygenase	gnl\|CDD\|236046	PRK07538, PRK07538, hypothetical protein; Provisional.	2.56138e-66
NZ_AP022588.1\|WP_163798386.1\|3747161_3748379_-\|cupin-like-domain-containing-protein	gnl\|CDD\|369647	pfam08007, Cupin_4, Cupin superfamily protein. This family contains many hypothetical proteins that belong to the cupin superfamily.	5.06272e-32
NZ_AP022588.1\|WP_163798371.1\|3740235_3740439_+\|hypothetical-protein	gnl\|CDD\|235440	PRK05387, PRK05387, histidinol-phosphate aminotransferase; Provisional.	0.00501537
NZ_AP022588.1\|WP_163798370.1\|3739818_3740127_+\|DUF732-domain-containing-protein	gnl\|CDD\|368380	pfam05305, DUF732, Protein of unknown function (DUF732). This family consists of several uncharacterized Mycobacterium tuberculosis and leprae proteins of unknown function.	1.68507e-21
NZ_AP022588.1\|WP_163798391.1\|3750483_3752370_-\|Stk1-family-PASTA-domain-containing-Ser/Thr-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.81388e-125
NZ_AP022588.1\|WP_163801911.1\|3756187_3756871_-\|DUF59-domain-containing-protein	gnl\|CDD\|366850	pfam01883, FeS_assembly_P, Iron-sulfur cluster assembly protein. This family has an alpha/beta topology, with 13 conserved hydrophobic residues at its core and a putative active site containing a highly conserved cysteine. Members of this family are involved in a range of physiological functions. The family includes PaaJ (PhaH) from Pseudomonas putida. PaaJ forms a complex with PaaG (PhaF), PaaI (PhaG) and PaaK (PhaI), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid. It also includes PaaD from Escherichia coli, a member of a multicomponent oxygenase involved in phenylacetyl-CoA hydroxylation. Furthermore, several members of this family are shown to be involved in iron-sulfur (FeS) cluster assembly. Iron-sulfur (FeS) clusters are inorganic co-factors that are are able to transfer electrons and act as catalysts. They are involved in diverse cellular processes including cellular respiration, DNA replication and repair, antibiotic resistance, and dinitrogen fixation. The biogenesis of such clusters from elemental iron and sulfur is an enzymatic process that requires a set of specialized proteins. Proteins containing this domain include the chloroplast protein HCF101 (high chlorophyll fluorescence 101), which has been described as an essential and specific factor for assembly of [4Fe-4S]-cluster-containing protein complexes such as the membrane complex Photosystem I (PSI) and the heterodimeric FTR (ferredoxin-thioredoxin reductase) complex and is involved in the assembly of [4Fe-4S] clusters and their transfer to apoproteins. The mature HCF101 protein contains an N-terminal DUF59 domain as well as eight cysteine residues along the sequence. All cysteine residues are conserved among higher plants, but of the two cysteine residues located in the DUF59 domain only Cys128 is highly conserved and is present in the highly conserved P-loop domain of the plant HCF101 (CKGGVGKS). SufT protein from Staphylococcus aureus is composed of DUF59 solely and is shown to be involved in the maturation of FeS proteins. Given all this data, it is hypothesized that DUF59 might play a role in FeS cluster assembly.	1.08089e-06
NZ_AP022588.1\|WP_163801912.1\|3758145_3759603_+\|Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	1.58555e-21
NZ_AP022588.1\|WP_174266836.1\|3744426_3745155_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.09948e-07
NZ_AP022588.1\|WP_163801909.1\|3752463_3753495_-\|trypsin-like-peptidase-domain-containing-protein	gnl\|CDD\|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	9.84932e-45

>NZ_AP022588.1|WP_163798386.1|3747161_3748379_-|cupin-like-domain-containing-protein
MLSRCIAADPRDFAVQHWGRRPLLSRSGALPRDFADLLSPAAVDELIAERGVRAPFIRMAKAGQLLARDCYLGPAGFGAEMPDQVDSAGVLAQFAAGSTIVLQGLHRLWPPVIDFVRGMVDDLGHPVQANAYVTPRGSRGFDPHYDVHDVFVLQVSGQKRWIVHEPVHHDPLPSEPWTDHREAIEARAAEDPIIDAVLSAGDALYLPRGWLHSAEALDATSIHLTIGVSAVTGLDVIRAVVDSLASVDDLRRSLPMGIDLTDRDEMVATASKVMAELVDVLRDHGTELSEGAAGRLSRRHADRTRPVAVRPLATLDAIDEVSFGTFRWRHGLIAVVEEHGGRVELRLPDRTIRFPAYCAPAVRALHSGSAAAAASLPGLDTADATVLLRRLLREAVVVPDRSSQG
>NZ_AP022588.1|WP_163798385.1|3746283_3747165_-|sucrase-ferredoxin
MTPARRPPCSDQSLLRNDPMYGTASAGHSWVMLELSGGWGHSALLDSPAIVDPNLGRAIARHFETAGMRIAAIRRPGRRPAAPRWRWFIAHSDEGREALYTGEVSGPDDYLRLAPDGSDGAPSPDPLVAICAHGRHDQCCAVRGRAACAAIADEYPEITWECSHLGGDRFAATMLVLPEGLCYGRVDSADSADLVRLYFDGRVNDAFLRGRTSLPHAVQAAQHFVREATGEDRIHALSPLDVVHDEGRIRVRLRGPSGPIDVVLTEKMTDPLLSMCSAKVEGSVRTFVFESMS
>NZ_AP022588.1|WP_163798382.1|3745094_3746279_+|FAD-dependent-monooxygenase
MSLRVAIVGAGIGGLTAAIALRRRGIDATVYEQAHELKALGAGVAIATNGSRVLTDLGLGDAIEALAGRVRGYAYRTSTGAALPIDPAALSLGDPERTWFLHRGEFQTALARALPDGALQMGRRCVGVTETPEGARVDFADGSVVEADVLVGADGIHSRLQGTVTDPADPVSEGIMAYRGLLPAERVRGVVDLDVSAMWLGPRQSFLLYPVSSGRLMNLVAFVPTTLDVEESWTAPGDVAELARAYQGWDERVLQVIGAMDETFRWGIYDREPLDRWSTGRITLLGDSAHAVTPHLGQGANQAVEDAITLAATLADASTGDVPDRLALYESLRRGRTRLVRNQAREAGRLYRSTEVSPAEQAERLRGIYDSIHINDHDAEHVATEALSRVGASR
>NZ_AP022588.1|WP_174266836.1|3744426_3745155_-|TetR/AcrR-family-transcriptional-regulator
MRSRPSGRRFPHRRLLPVATCWRLHDRRSCTDRHTIDRTCTDRYGQGVPRPPDPDRRAQLLRAIVDHLERTGIDDLSLAPLAEAVGTSKRMLLYYFGDRGGLIAAAMEFSRPDVGQIFANVDTPERLAAASTDLWHALTRGAQRHRVRLLLQVLALSTTAPDTYGPYGRRAVEVVLDPITTAFRDAGFPADEAAVGATLVVSGLRGLCQDLLVTTERERVDAAAALLVHSAVFVDAAPAIDR
>NZ_AP022588.1|WP_163798378.1|3744155_3744386_-|deoxyribodipyrimidine-photolyase
MIHDVVLAATQQPEAAGFILRGIKGIFVAIGSVIAAVICAIVAGTKGRSALGWGLLGLFFSIITLIVVIVIPSKRK
>NZ_AP022588.1|WP_163798376.1|3742067_3744053_-|MFS-transporter
MRQGPLAGRYPAVAAMVTFALIPYLALSAAVDPLVPIITESLHMSEQTMTLSSGLGNAAYAVGTVLAVQFAQHLPQRRMLLSYAAVLVVGSVTAAAAPNAPAFITGHILQGLATSMLLIAAAPPLTIGFPRDKLKITAVIMNMCVFGAVALGPFIGGVQAESNAWRPLFWIVAGIAVVALVLAVLTFEDAPPADRDAPRDLPAIVLAAVGCTAAFVGAAQLTSHDFSDLAVTVPMLGGLALIVVLIVYQFRARRPLLTVRTMLTSAIPVAGVGVALFAAAASVAATVLTAAVFLKTYSPVHVGLLYLPELGGAVIMAFVFGFVISRRAIHYLPLVGMFLLAAGIVVFRFALPANQPLALLGSTLTGLALGATVAPALFVAGFSLKSNSLQRVFAIIELLRAVAAFMVAPIFVHFATRVSSDLVEGTEIALWVGFGLAIMGAVFGVAVYALSGARPQTPDLDEFLDGDEPAWYSPPLLARLRSNVSVEPPVHHPHVDSGPSVDRSVHAGAGPVLLAYDGSDLAAHAIAEAAGRVPQSVAIVVCVWQPVDLGFTPVDDQHVDADRASDVRRAAERTAAHGAALARDAGFEASSVAVEATPTWRGIVAAADEHDARLIVLGPHRRAGLLGHLEGSVASAVAAHTDVPVLLVPEPEESEAPAAHR
>NZ_AP022588.1|WP_163798373.1|3741638_3742022_-|hypothetical-protein
MTVDTLVEAPSTAPVANTPAEPLAPAADKKAPAKKAAARTKTVELTLTVTGTADGEWRAQLKQGSTFLARDVAVAAAAVSRAARELHDDLAEPIDAIIGEARSQQAAKVAALEAELDAARQALANLD
>NZ_AP022588.1|WP_163801908.1|3740880_3741276_-|hypothetical-protein
MAPAGTTAVPTAEDDETLDELIAFSSPSGNVGCYVDPSAVRCDIAERDWTPPARPADCEFDYGQGLSLAPGGTPAFVCAGDTTLGGGAPLPYGESISAGALQCDSSESAITCRDSLTGHGFAIAREFYDVF
>NZ_AP022588.1|WP_163798371.1|3740235_3740439_+|hypothetical-protein
MPAESPTSRTTFEESLSAALARGEWPTQMAGLGPLARSAIEAVAREHPDATVHHIAEAYDAFGRESA
>NZ_AP022588.1|WP_163798370.1|3739818_3740127_+|DUF732-domain-containing-protein
MRGKFVVSVAAVGFALATTFAPPALADENDEIFLSVLDDEGITYPSAVDAVKVGMAVCDYLQEGNSLLDATQEVSNETSLNIEDSGFFVGAAAATYCPSESP
>NZ_AP022588.1|WP_163798390.1|3748916_3750482_+|phospholipase
MRADPILTPGETCWRVDRADQFACIIDAADYFRHAKAAMLRAQHRIVLVGWDFDARTPFERGAATLPGPNQLGAFLQWIVWKRPALEIYLLKSNLKLLPAFDDFWFGVTPVSLMNRISSKRLHLAIDPAHPVGSVHHQKIVVVDDSFALCGGLDFTLDRWDTPEHADDDDTRKIAGRTHGPRHEVGLGVDGAAARALGEHARDRWEWATGQKLTEIEARHVAWPRDLSPTLPDVDVAIARTLPTFEDRDEVREVEALNLAAIAAARDTIYLENQYLASRRLAEALAERLKEPDGPEVVVVLPRSSESRLEQESMDSARQLLLHLLWEADEHGRFGVYWPVTDGGTPVYVHSKVMVIDDRLLRIGSSNLNNRSMGFDSECDIALEVPTGGDRADDVRREITTLRDRLVTEHLGVPVEEFRDELALNGSFLTTVETLRGSGRTLRPFTGRTVADEGSPLAENDLMDPDHVPKSLTRSFARLIEGLTERRFRPASVGVELAKGGLEPVPGSDDVKQADGDEDDA
>NZ_AP022588.1|WP_163798391.1|3750483_3752370_-|Stk1-family-PASTA-domain-containing-Ser/Thr-kinase
MSTPQRLSDRYELGDIIGLGGMAEVHLARDLRLHRDVAVKVLRVDLARDPQFQLRFKREAKNAAALNHPAIVAVHDTGDAETSHGLLPYIVMEYVDGVTLRDIVRTDGPLAPRRAIEIIADVCQALNFSHQHGIVHRDVKPANVMISKTGAVKVMDFGIARALSDAGNSLTATATVIGTAQYLSPEQASGETVDARSDVYSLGCVLYELLTGDPPFIGDSPISVAYQHVRVEPTPPSRRQAGISPALDAVVLKSLAKKPDERYQSAAEMRSDLIRVHGGEAPKALGDTPPRATPTGRHAAAPPPRDPHPAADHDTQPATRQPDAPPRRSSTRRWSIVAVALLSVVAVIAAVSITVFGGGKDLRVPDVGGRTEAAAVAELRSRGFETRSQEQTDSNVPSGTVIDTSPAADAEAATGDEIVVNVSSGPPQSQIPDVENLTPEDAESRLRQAGFENLTRTADQSAPELKDRVLSTSPPAGSSTGNTTRVEIVVGSGPDSKPVPDVKRRPAEVAEDILRADGFTSPFRVTVDSPLPAGEVVDTSPSAGQVAAVDSVIQVQVSLANQFVMPDLKNQFWDEAQQRLQSMGWTGGMDRGPDVPGGDAGRARVVAQDPPAGAGVAFGGRVTLSFGS
>NZ_AP022588.1|WP_163801909.1|3752463_3753495_-|trypsin-like-peptidase-domain-containing-protein
MVFAPRILTPIVAFLGVLALAAPPSATAAPSTQVPTAPVDQGLLDTQVEPGVARIDTTIPFQGALGAGTGIVLSPGGEVLTNFHVVQGAETITATVDGRRFDADLAGYDRSNDIALLRLRGARDLRAVPIGSVNDLARGESVVALGNANGTGSPVTREQGTVTGFGREITARDELTGNAEQLTGLVEFGAPVRAGDSGGPLVDDAGRVVGITTAASQTFEMQAGGEGFAIPIDRAIGIAGQIRSGAPTATVHIGPPALLGVGVSAAAGRPGTGVIAGEVLRGGPADAAGLRPGDLITSVDGQAVDSGSALTSVLDRRVPGDTVDVTFVDTDGNRQVTRATLAA
>NZ_AP022588.1|WP_163798394.1|3753599_3754808_+|cytochrome-P450
MTTPTARGADVYYDPYDTDIVADPYPVYARLRDEAPIYHNGRYDFWAISRHADVERALADWQTYSNDRSDILELINSDFDMPEGVMMFEDPPVHTMLRGLVSRVFTPRRMAAIEDQIRAYCVRCLDPHVGTDGFDVIAELAAMMPMRVIGMLLGIPETEQIAVRDANDAGLRTKPGAPMRVSNPDAIADGRIYAEYVEWRSKNPSDDLMTSLLNVEFTDGDGVTRKLTRGEVLHYTQVVAGAGNETTGRLIGWLAKVLADHPEQRRLVHEDRSLLNRAIDETLRFEPTGPHVGRFVARDVVCHGRTIPAGSAVLLLFGAANRDPRRYADPDVFDLRRTDISHLTFGKGVHYCLGANLARLEGRVALDEMLNRWPDWGIDESTARLAPTSTVRGWERLRIVLG
>NZ_AP022588.1|WP_163798397.1|3754824_3755148_-|antibiotic-biosynthesis-monooxygenase
MIFIVVKWTPKPEFVETFPDVVADFTAATRNEPGNLFFEWSRSIDDPSEYVLVEGFRDGDAGGEHVGSEHFKTFVAAAPDVLASTPLIISHSIDAEGWSEMGEIRVD
>NZ_AP022588.1|WP_163801910.1|3755156_3756182_-|alcohol-dehydrogenase-catalytic-domain-containing-protein
MRAVRVVGYHQNLEMADVEKPTPTGPFDVVVKIGGAGVCRTDLHILEGQWAEKSQVELPYTIGHENAGWVEAVGSAVTNVVEGDKVIVHPLITCGLCRACRSGDDVHCEANQFPGIDTNGGYAEYLKTSARSVVKIDDSLEPSDVAALADAGLTAYHAAAKAAKRLTPRDRVVMIGAGGLGHIGIQVMKSLSPAELIVVDRNPEALKLAEAIGADCGVMADGTQVQQVLDLTGGHGAEAVVDFVGEGGATAEGVAMLRGAGDYYVVGYGENIDVPTIDVVSNEINFIGNLVGSYNDLCDLMALAARGKVNLHTQKYQLDDFQSAITDLDNGNVRGRAILIP
>NZ_AP022588.1|WP_163801911.1|3756187_3756871_-|DUF59-domain-containing-protein
MDPELDEPITSLGFVRSLTLSPGGNVKVHLRLPTSFCSPNFAYLMASDSKDVLNGLDWTHVVTVELDDHHDSLIINAGLAADAGYRGTFGHEADVGLDELRETFRRKAHTAAMERCLTALLRAGFPSESIGSATLADLPADDASRALLHRRAALGLPTGGDSAVLVDHEGRPPEDPELALRRARSTRISIDGNAHFCRGLLGTRYGDETPALPTTFTPLTILEGVHP
>NZ_AP022588.1|WP_163798399.1|3756912_3757950_-|amidohydrolase-family-protein
MYRKDDTSYFIVDAHIALWDARPENQRNIHGKQFIDCFYDYHRNLSPESELWTYDEYLYQGGERLMKDLFTDGYVDHAIFQPAHLGEFYYKGFGQTDEASELAAKHPDKLTYNHHFDPRNGEQGLDQLRLDAEKYHLKGVKLYTAEWHGDSRGYKLDDPWAYRYFEACRELGIRNIHVHKGPTIRPLDRDAFDVADVDHVASDFTDLNFVVEHCGLPRLEDFCWIATQEPNVHAGLAVAMPFIHTRPKYFAQIMGELLYWIGEDRIQFSSDYALWTPRWLVEAFVDFQIPDDLGEYAPITTDQKKKVLGLNAAKMYDIPVPAELQIPDAAETETGPRGADNLVDA
>NZ_AP022588.1|WP_163801912.1|3758145_3759603_+|Fis-family-transcriptional-regulator
MHRAQRRESGDVAVTAEAVPRRLLASWQRSEEYGISLDAVEPVFTGTDDLGSLFFECGNEVLADLHRTLANEPVSMMLTDAEGVVLSRLSGDRSLLEALDDVHLAPGFAYSEREVGTNGLGLALADRVPTLVRAEQHYSMSLCSFTCAAVPVLDPQTGRLEGSVNLTTWSRSSSDLLLALARSAASNTSALMLARTSGRPRRQPPRGQVFRVEVPRLEPGSGTLHDLSTQWNDVVAAAERGMASGGIVAAVGELGSGRATSLAQAARHVHPRDRILSATAPAPTDVQTWLGLWTPELGKSHTAVIVRNVDMLPTWVAERLRALVLRGSTEAAVPFAVTAERFADIPPALAELVDTVVDVPPLRDRCDDVLPLALHVARRVRGRDVDVTPAAARALRNHDWPGNVDELTRVVTHAAGRADVIDVGGLPPEVLAGSTRHLSRIEAFERGEIIRVLGLQDSTMADAARELGMSRATLYRKIAQYDIHQ
>NZ_AP022588.1|WP_163798401.1|3759639_3760596_+|TIGR03557-family-F420-dependent-LLM-class-oxidoreductase
MAKIGYFLSCEQFGPKELIDQAKRAEAAGFEALWISDHFHPWNDEQGQSPFVWGVIGALSEVTSLPVTTAVTCPTIRIHPAIIAQAVATAAVQLDGRFVFGVGSGEALNEHVLGDPWPSVGVRLEMLEESLEIIRKLHEGREISYHGLHYEVQEARIYTLPEQPVPIYVSGFGTQAAELAGRIGDGFCTTMPDAELIKAFRESGGGDKPVQAGTKVSWDRDADAGLDAAHRLWANESLPGQLAQILPRPKDFEDAMSLVPREKVGESVTCGPDADEHAQQIRPYLEAGVDEVYVQQIGPDMEGFFAAWEKDVLPQLRG

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Crispr_ID: NZ_AP022588_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022588_3

5136909-5136994

Orphan

Consensus_repeat	Method
CCCACGTTGGTGTTGTTGGACCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP022588_3

>merge|NZ_AP022588|3|5136909-5136994|CRISPRCasFinder
CCCACGTTGGTGTTGTTGGACCCAGCGAGGGTGGCCAGGGTCAGGCCATTCCCATAGTTGTTCACCACGTTGGTGTTGTTGGACCC

>NZ_AP022588|3|3|5136909-5136994|CRISPRCasFinder
CCCACGTTGGTGTTGTTGGACCC	AGCGAGGGTGGCCAGGGTCAGGCCATTCCCATAGTTGTTC
ACCACGTTGGTGTTGTTGGACCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022588.1\|WP_174266875.1\|5149941_5150430_-\|ribose-5-phosphate-isomerase	unknown	unknown	gnl\|CDD\|235509
NZ_AP022588.1\|WP_163800414.1\|5132035_5133316_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX	unknown	unknown	gnl\|CDD\|235422
NZ_AP022588.1\|WP_163800420.1\|5139853_5141233_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_AP022588.1\|WP_163800413.1\|5130208_5131987_+\|FUSC-family-protein	unknown	unknown	gnl\|CDD\|379231
NZ_AP022588.1\|WP_163802090.1\|5143916_5144549_+\|cutinase-family-protein	unknown	unknown	gnl\|CDD\|366455
NZ_AP022588.1\|WP_163800423.1\|5147404_5149126_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379114
NZ_AP022588.1\|WP_174266997.1\|5134231_5134816_-\|ATP-dependent-Clp-protease-proteolytic-subunit	unknown	unknown	gnl\|CDD\|178955
NZ_AP022588.1\|WP_163800412.1\|5129365_5130190_+\|formate-dehydrogenase-accessory-sulfurtransferase-FdhD	unknown	unknown	gnl\|CDD\|234823
NZ_AP022588.1\|WP_163800410.1\|5123622_5125797_-\|glutamine-synthetase-III	unknown	unknown	gnl\|CDD\|226477
NZ_AP022588.1\|WP_163800409.1\|5122656_5123505_+\|TIM-barrel-protein	unknown	unknown	gnl\|CDD\|224007
NZ_AP022588.1\|WP_163800426.1\|5150491_5152180_-\|LpqN/LpqT-family-lipoprotein	unknown	unknown	gnl\|CDD\|270916
NZ_AP022588.1\|WP_163800421.1\|5144635_5145469_+\|DUF1542-domain-containing-protein	unknown	unknown	gnl\|CDD\|215598
NZ_AP022588.1\|WP_163800422.1\|5145479_5147171_-\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|223104
NZ_AP022588.1\|WP_163802089.1\|5142244_5143696_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237537
NZ_AP022588.1\|WP_163800417.1\|5134954_5136385_-\|trigger-factor	unknown	unknown	gnl\|CDD\|234956
NZ_AP022588.1\|WP_163802088.1\|5127045_5129373_+\|FdhF/YdeP-family-oxidoreductase	unknown	unknown	gnl\|CDD\|273765
NZ_AP022588.1\|WP_163800424.1\|5149143_5149938_-\|Fpg/Nei-family-DNA-glycosylase	unknown	unknown	gnl\|CDD\|223344
NZ_AP022588.1\|WP_163800415.1\|5133587_5134235_-\|ATP-dependent-Clp-protease-proteolytic-subunit	unknown	unknown	gnl\|CDD\|237133
NZ_AP022588.1\|WP_163800411.1\|5125923_5127018_+\|YncE-family-protein	unknown	unknown	gnl\|CDD\|271320
NZ_AP022588.1\|WP_163800419.1\|5138322_5139813_+\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143432

Protein	Function_ID	Function_description	E-value
NZ_AP022588.1\|WP_174266875.1\|5149941_5150430_-\|ribose-5-phosphate-isomerase	gnl\|CDD\|235509	PRK05571, PRK05571, ribose-5-phosphate isomerase B; Provisional.	1.39282e-83
NZ_AP022588.1\|WP_163800414.1\|5132035_5133316_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX	gnl\|CDD\|235422	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX.	0
NZ_AP022588.1\|WP_163800420.1\|5139853_5141233_+\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.7776e-112
NZ_AP022588.1\|WP_163800413.1\|5130208_5131987_+\|FUSC-family-protein	gnl\|CDD\|379231	pfam13515, FUSC_2, Fusaric acid resistance protein-like.	1.8606e-18
NZ_AP022588.1\|WP_163802090.1\|5143916_5144549_+\|cutinase-family-protein	gnl\|CDD\|366455	pfam01083, Cutinase, Cutinase.	1.07294e-45
NZ_AP022588.1\|WP_163800423.1\|5147404_5149126_+\|AAA-family-ATPase	gnl\|CDD\|379114	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system. Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.	1.75293e-18
NZ_AP022588.1\|WP_174266997.1\|5134231_5134816_-\|ATP-dependent-Clp-protease-proteolytic-subunit	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	1.81429e-116
NZ_AP022588.1\|WP_163800412.1\|5129365_5130190_+\|formate-dehydrogenase-accessory-sulfurtransferase-FdhD	gnl\|CDD\|234823	PRK00724, PRK00724, formate dehydrogenase accessory sulfurtransferase FdhD.	4.71327e-123
NZ_AP022588.1\|WP_163800410.1\|5123622_5125797_-\|glutamine-synthetase-III	gnl\|CDD\|226477	COG3968, COG3968, Uncharacterized protein related to glutamine synthetase [General function prediction only].	0
NZ_AP022588.1\|WP_163800409.1\|5122656_5123505_+\|TIM-barrel-protein	gnl\|CDD\|224007	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism].	5.39392e-23
NZ_AP022588.1\|WP_163800426.1\|5150491_5152180_-\|LpqN/LpqT-family-lipoprotein	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	5.56055e-94
NZ_AP022588.1\|WP_163800421.1\|5144635_5145469_+\|DUF1542-domain-containing-protein	gnl\|CDD\|215598	PLN03138, PLN03138, Protein TOC75; Provisional.	2.92459e-05
NZ_AP022588.1\|WP_163800422.1\|5145479_5147171_-\|cation:proton-antiporter	gnl\|CDD\|223104	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism].	5.62926e-66
NZ_AP022588.1\|WP_163802089.1\|5142244_5143696_+\|hypothetical-protein	gnl\|CDD\|237537	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional.	0.000348322
NZ_AP022588.1\|WP_163800417.1\|5134954_5136385_-\|trigger-factor	gnl\|CDD\|234956	PRK01490, tig, trigger factor; Provisional.	8.30872e-157
NZ_AP022588.1\|WP_163802088.1\|5127045_5129373_+\|FdhF/YdeP-family-oxidoreductase	gnl\|CDD\|273765	TIGR01701, Hypothetical_protein_Rv2900c/MT2968/Mb2924c., oxidoreductase alpha (molybdopterin) subunit. This model represents a well-defined clade of oxidoreductase alpha subunits most closely related to a group of formate dehydrogenases including the E. coli FdhH protein (TIGR01591). These alpha subunits contain a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulfur clusters and cytochromes. The particular subunits with which this enzyme interacts and the substrate which is reduced is unknown at this time. In Ralstonia, the gene is associated with the cbb operon, but is not essential for CO2 fixation.	0
NZ_AP022588.1\|WP_163800424.1\|5149143_5149938_-\|Fpg/Nei-family-DNA-glycosylase	gnl\|CDD\|223344	COG0266, Nei, Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair].	5.722e-67
NZ_AP022588.1\|WP_163800415.1\|5133587_5134235_-\|ATP-dependent-Clp-protease-proteolytic-subunit	gnl\|CDD\|237133	PRK12553, PRK12553, ATP-dependent Clp protease proteolytic subunit; Reviewed.	3.06206e-134
NZ_AP022588.1\|WP_163800411.1\|5125923_5127018_+\|YncE-family-protein	gnl\|CDD\|271320	cd05819, NHL, NHL repeat unit of beta-propeller proteins. The NHL(NCL-1, HT2A and LIN-41)-repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. The repeats have a catalytic activity in Peptidyl-glycine alpha-amidating monooxygenase; proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localized to the repeats. Tripartite motif-containing protein 32 interacts with the activation domain of Tat. This interaction is mediated by the NHL repeats.	1.1701e-08
NZ_AP022588.1\|WP_163800419.1\|5138322_5139813_+\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143432	cd07114, ALDH_DhaS, Uncharacterized Candidatus pelagibacter aldehyde dehydrogenase, DhaS-like. Uncharacterized aldehyde dehydrogenase from Candidatus pelagibacter (DhaS) and other related sequences are present in this CD.	0

>NZ_AP022588.1|WP_163800417.1|5134954_5136385_-|trigger-factor
MKSTVEKLSPTRVRINVEVPFTELAPDFDRAFKEMAKQIRLPGFRPGKVPVRLLEQRIDKQAMLDQVVGEAVPGRYSEAVASAEVQPLGQPEIDITSKEYGEDLVFTAEVDVRPEIELPDLSALKFEVDAISVDDDEVDTELQNLRARFGTLTGVDRAAQDGDFVSIDLSATVDGKDVEEAKTEGLSHEIGSGNLIEGLDDAITGLKADESKVFTTTLVAGEHAGEEAEVTVKVNSVKERELPEPDDEFAQLASEFDTIDELKASLVEQVERVKRIQQAEQIRDKALETLLEQVEVPLPEAIVQAQVDDTLHNAVHGLDHDEAAFAEALEKEGTTRDEFDADNRSNAEKAVKTQLLMDAVADSLGIQVGQGDLTERLVLMSRQYGIEPQQLLQVLQQNNQLPAMFADVRRGLTIAAVVHGATVTDSEGNEVDTTEYFGPKPDQLAGLVDAAADDSADDDDDSDDDVTEDAGEDEAK
>NZ_AP022588.1|WP_174266997.1|5134231_5134816_-|ATP-dependent-Clp-protease-proteolytic-subunit
MRSSTSGLNLVDSVYERLLSERIIFLGSQVDDDIANRLCAQILLLSAEDPTKDINLYINSPGGSISAGMAIYDTMVLAPCDVATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQSIERIEADSDRDRWFTAQEALEYGFVDHIITHANFNGVTS
>NZ_AP022588.1|WP_163800415.1|5133587_5134235_-|ATP-dependent-Clp-protease-proteolytic-subunit
MTDHTDPRLQPQARYILPSFIEHSSFGVKESNPYNKLFEERIIFLGVQVDDASANDVMAQLLVLESLDPDRDITMYINSPGGSFTSLMAIYDTMQYVRADIQTVCLGQAASAAAVLLAAGTPGKRLALPNARILIHQPSLGGVIQGQFSDLEIQAAEIERMRTLMETTLARHTGKSAEQVRKDTDRDKILTAESAKEYGIIDTVLEYRKLSAQNA
>NZ_AP022588.1|WP_163800414.1|5132035_5133316_-|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELADADDVKLDELPKPAEIREFLEGYVIGQDTAKRTLAVAVYNHYKRIQAQEKSRDSRAEPVELAKSNILMLGPTGCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKRAETGIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQIDTTNVLFIVAGAFAGLEKIVSDRVGKRGLGFGAEVRSKAEIDTQDHFAEVMPEDLIKFGLIPEFIGRLPVVASVTNLDKESLVTILSQPKNALVKQYSRLFEMDGVELEFDEEALDAIADQAIHRGTGARGLRAIMEEVLLPVMYDIPSRDDVAKVVVTKETVLDNVLPTIVPRKPPRSERRDKSA
>NZ_AP022588.1|WP_163800413.1|5130208_5131987_+|FUSC-family-protein
MPADPPLPRRAVGAVAGLFRLRPSPPRWPNGARAAISAAIPILIGWAAGDLGAGLIATLGAFTCRFGSGRPYRNRDVQLAAIGAALATAITLGAWAAPVIWLAVGVVSAIAVVAVWVCSALEVGPPGAYVFVIVCAAGIGVSASHLPPWHIGLLVLAGAAIAWTTQMVGVLVDPRGPEKAAVSAAGDAVATAIEHAGSVDAGLARGRAAEALYRAWTILVGHQAATVPTGGTLDRLRQATHALHVLFADAMRAAALGLPVPDGAVDTARGLAALTIDPATVGRRDPDRAALRQPRAPELLRHAVTPGAHTRRVMVRVAIAAPVAGALAALVGAGHIYWAIAAAVLVLHLGMDRRGTLQRGVERLAGTWIGLALAAGILLIHPQGVWLALVVAALQFAIETTVTRNYVLASIFITAAALTVSSASHPVDVGGVLVDRGLDTLIGCSVGVAVFLLASARQESDRVPAAVADVLRRVAVVAGHLAGDGPGTVAAREARRTLQRAAMDLSVAREAARGGSPRQRMAADRLDTTVTAAEGLAYLAITTCWSVDRGGPDPMRAADAAEYRATLDSLADRVATGEVVASQLAALDPRMH
>NZ_AP022588.1|WP_163800412.1|5129365_5130190_+|formate-dehydrogenase-accessory-sulfurtransferase-FdhD
MGRVTARRKASHLTADSSTTRPETLAVEEPLEIRLNGSALTVTMRTPGSDVELAQGFLLTEGVIGGRDDIARVEYCRGTGDDGMNTYNVLDVRLTPGVPMPDVDVTRNFYTTSSCGVCGKGSIDAVRTVSRHSPGDDPTVVTSDALTAMPDELRSAQKVFASTGGLHGAALFDADGTMLVVREDIGRHNAVDKVIGWALENRRVPLTGTVLLVSGRASFELTQKAVMAGIPVLAAVSAPSSLAVDLATQAGLTLVAFLRGQSMNVYSRPDRVTH
>NZ_AP022588.1|WP_163802088.1|5127045_5129373_+|FdhF/YdeP-family-oxidoreductase
MTGRDVAKDIPVSYDEHAVVTTGAEHEAAGVKAVMVSLQRGLTSMGPLRTAAALVRLNQRKGFDCPGCAWPEEHGGRKFAEFCENGAKAVAEEATKRVVTPDFFARHSIDDLADRPEYWLSQQGRITHPVILRAGDDHYRPISWDHAYHVIAEHLRALDSPDEAVFYTSGRTSNEAAFAYQLLVRSFGTNNLPDCSNMCHESSGASLVDSIGIGKGSVTVEDLEYADVILIAGQNPGTNHPRMLSVLEKAKANGAKIIAINPLPEAGLMRFKDPQKVNGVVGNGIGIADEFVQIRLGGDMALFAGLGRLLLEADDRAPGTVVDRAFVAEHCANFEAYEAQTRAVDLDLVLEATGIDRAQLDRLAEMLITSERTIACWAMGLTQHRHAVPMISELTNLLLMRGMIGKRGAGVCPVRGHSNVQGDRTMGIWEQMPETFLSALDARFGIVSPRKHGMDTVDAIRAMRDGRASVFMGMGGNFALATPDTHVTEAALRKCSLTVQVSTKLNRSHVVHGTTAIILPSLGRTDKDLQQGSKQQVSVEDSMSMVHLSRGSLQPPSDQVRSEVAIVAELARTLLGPDHPVPWEEMRADYDRVRDAIAAVVPGCDDYNRKVRQPDGFQLPHPPRDSRLFPTTTGKANFAVNPLEWIPVPEGRLVLQTLRSHDQYNTTIYGLDDRYRGVKGGRRVIFVNPDDVVALGFSEGDRVDLVSEFTGASGDVEERRAEDFLIVPYSTPVGNAAAYYPETNSLVALDHVAARSNTPVSKAVTIRLEARAARG
>NZ_AP022588.1|WP_163800411.1|5125923_5127018_+|YncE-family-protein
MRRLPLLVAAVLFVGGCSSTTEPEESSSASSSTATQTTPTTTGLLPPGVPTEGSRPPADNLPPAAEPQRAPALTGPASGMQVPVGDSPEGIVADEQTRTVAVAKRNPDELVLINADTGVVTGRTPLPGAVRHLQLAKPGGPVLVPVESANALVRVDLPSGRAEQQIITGTVPHDASEAPNGTVFVANELGGTTTVLRGDDIVKVFTDSVQPAGMAPVGNLMGMLDVRKNDLTVYDADKLTIVGSTPAGDGPTHLVADKHGRYIAADTRGDAVRVFSTEPRALSEIAQPGGPYGITYDPARDILWVASSGTNEVVGYDMATETPREVKRVATVQNPYTVAVDPLTGRLFIAGVTAGVVQIVDPAA
>NZ_AP022588.1|WP_163800410.1|5123622_5125797_-|glutamine-synthetase-III
MSGNAVRLQAITNVEAYVPPAISFDPAEAPGEIWGANVFTLAEMRLRLPKAAYKSVVATIEKGAKLDPAIADSVASVMKDWALSKGATHYAHVFYPMTGLTAEKHDSFLEPVGDGQTLAEFAGKTLIQGEPDASSFPSGGLRSTFEARGYTGWDVTSPAYILENPNGNTLCIPTVFVSMTGEALDYKTPLLRSQQAMGAQAERILRLFGHEDFDHIVSFCGPEQEYFLIDRHFFLARPDLINSGRTLFGAKPPKGQEFDDHYFGAIPDRVLGFMMDTERELFKLGIPAKTRHNEVAPGQFEIAPMFEKANIAADHQQLLMTTFKNIAKKHGMECLFHEKPFAGVNGSGKHVNFSLGNAQFGSLLVPGDTPHENAQFLVFCAAVIRAVHKFSGLLRVSVASATNDHRLGANEAPPAIISIFLGDQLADVFEQIAKGAATSSKGKGSMIIGVDTLPVLPTDPGDRNRTSPFAFTGNRFEFRAPGSGQTINVPMIILNTIMADSLDYMATWLEKAVGEGEDFDMAVQKLLTEIITEHGAVVFNGDGYSDNWAVEAEARGLPNLKMTLDAIPELGKPEAIEVFEKYGVFNARELHSREEVRYEMYALTVGVEAKLTLEMGSTVILPAAIRYQTELAQNVATLKAAGVEPDLTMLQTVSAPISDLTAALTALKAGMDAHGGDTAAEEAAHAQSLLALMDDVRWAADTLENLVADDLWPLPTYQEMLYIL
>NZ_AP022588.1|WP_163800409.1|5122656_5123505_+|TIM-barrel-protein
MAESRLVATAWTSAGDTSPMHVPPVSPVPIAERIKAIAEAGYVGMGLIQDDLRVIRDSIGFSQLRSLIDAAGLTHAEIELIERWWIPRGADGHSYEVRELLFDAADVLRPAFIKIGSELGPPATRPDELIEQLRRLADEAATHGTRIAIETMPFSRIATVPMGADIVTAADHPGVGLLVDAWHVFRAGTSLDELSDALTPGMVFGVELDDAADEVDGTLFEDTVHNRLLCGEGEFDLPGLVSVLRDSGFDGPWGVEILSDDFRALPVAEALRAAADTARAVL
>NZ_AP022588.1|WP_163800419.1|5138322_5139813_+|aldehyde-dehydrogenase-family-protein
MTDTIAASADASSTPDATTREIIDPATGAVIATVPEEGADGVDAAVAKARAAFEGGPWPALPRSARARLLLRIADAIENDSERLYTLEAHNNGRPITETRAQLSRVPEWFRYNAGLLAAQRLAVLPGDGPYLTYQQRLPLGVCGIITPFNHPLLILARSLSAALANGNTVVVKPSEMTPLTTLALAEILADAGLPDGVLNVVTGGRPAGERLTRHPDVAKITLTGGTEAGRAAALATAARFARVTAELGGKTPVVMFDDVDPGIAAEGAAFAAFVAAGQSCVAGSRFLVQRGIYEPFVDALAARARAIRVGDPSLPETQMGPLISARQRDKVLGLIETGPAEGARIAAGGGVPELSERLRGGYFLEPTVIADATMEMTVAQEEIFGPVAVVIPFDTEADAVAMANENRYGLGAGVWTTDVARAHRVAANIVAGMVWINDHHRLEPSLPWGGVKKSGTGKDAGTESFDDFSWIKSIVVRTAADHVDWYGDADQRRLN
>NZ_AP022588.1|WP_163800420.1|5139853_5141233_+|MFS-transporter
MVTHGKPRPGVRTRWHHEITRTQWLVLAGTTLGWGLDGFAGSLYVLVLGPTMTELLPHSGVTPTSTSIGFYGGLTVALFLIGWATGGILFGILADYFGRTKVLSIGILTYAVFSALAAFADTWWQLGILRFIAGMGSGVEAPVGAALIAETWRNRFRARAGGVMMAGYAAGFFAAAAAYALLGDHGWRPMLLLAGVPALLVWFIRRYVPEPPEINAHLQARKDQKAKGTNTSHDRFVLRRLLSPPLLRPMVVCTALATGALISFWSVSTWYPQIIRQMTAAADLPTALADHRVATAAMVFNAGGIIGYASWGFLADAVGRRKAFAMSFAVSAVAIVWAFPFDRDYGEFLAAMPFLGFGLFGALSGTFIYAPELFPPSVRATALAVCNSVGRYVTALGPLTAGVIATSWFGGNLGLATASVAAFGLIAVVGLAFARETRGESMPTDPEAVGAVAPAEEPR
>NZ_AP022588.1|WP_163802089.1|5142244_5143696_+|hypothetical-protein
MGGAGIVLAAPGVALLANPAEAQAQPTGAASGIPFIGSGAFTAFDPVALSNPFFDIAGSIPILNIFVGNGVDGTASNPNGGNGGIFAGSGGRGYTPSAADAAAGLNNGGRGGSAGFFFGNGGNGGAGAPGNAALGLAGGNGGSGGAAATFIGNGGAGGAGGAGGVGANGVNPTTTTTAATGALGTTLGAAGNGVDGVGLQNGGVGGAGGVGLSNPPGNGLFGGNGGSGGMLGGNGGAGGDGAPGSDNRFASSGGNGGNALFGGGAGGAGGSGGDDPTGSGGFGGKGGNGAAGVDGRDGTPGGNGGAGGAGGLVFGTGGSGGAGGLGGGGGAGATGGAGGAGGSGGDTATPVLVSAGNGGNGGNGAVGGAGGRGASGGNGGAAGSGGFIPGLTSAGTGGAAGNGGVGGAGGSGGAAGKGGSAGLNTSNPATNGTAGNNGTAGVGGTGGSGGKPGTSANGTSGTSGANGGSGPSGGGSSTGSAAG
>NZ_AP022588.1|WP_163802090.1|5143916_5144549_+|cutinase-family-protein
MLGVSTAGLLTPAPVAVAASECPDVEVVFARGTDEPPGIGVVGQALVDALRPMVKGMEIRAYGVKYPASYDFLGVATGATDASVRVQKVAKDCPKTKMVLGGYSQGAAVMDVVTTSPIAGLGFRNPLPAAMADRVSAVAVFGNPSARIGQPLTTLSPLYGAKTADMCNKADPICSLGRDFSSHTRYEESGLVKVAAQWVAKHLKAEPARS
>NZ_AP022588.1|WP_163800421.1|5144635_5145469_+|DUF1542-domain-containing-protein
MDVFLLLLIVVVVVGIAVAVIGSKKATGAREATSLADAKADARRLIDRLGGQVLNLSGTDDASKQALADASERFTAAGSQIDQATTAKQALLAKESAMEGLYYVRAARVAMNMDPGPELETLSGQKSAGVVTEDRRVEFEGRQIEASPGPSERTPNYYPGGRVAGRPVPAGWYSEPWWKPALVAGAWGVGSVLLFSTLFSGMGGVSYDAQAFEGGYGEGFQDGMDQGQLDGAGADGGGWDGGGDAGGDGGGWGGGDLGGGDGGGWGGGDFGGGDFGF
>NZ_AP022588.1|WP_163800422.1|5145479_5147171_-|cation:proton-antiporter
MELILVVVGAIAVTAIAHRRGLEPALIIVVIGIAVSFLPGFEAPELDSHILLTVVLPPLLYSAALNFSFPTFLRNIRPILGLGVGLVVISAFVVAAVSSWLVVVPLSFATALVLGAIVAPPDAVTAVAVGRKLGLPKRVMAILTGESLINDAAALTLFSIAVAQVAGGHTFIENPFLLFGYSAVVGPIVGAVLGYVTLWIRRRLANPGLETVQGLVVPFGAFIAAEELHASGVLAVVVAGFVVGNGTLGAGYQTRLQERYVWNSVDVLLEAFVFAYIGLHLRFVLEDLREANDSLGEVAVASAIVLLIVLVIRPLSVFAIFGRNKLFRHVEQRLSVPVPDGDGRRSAATRRRERVPGRWRARVDRRSLSWQENVVVSWTGMRGVVTLAAAAAIPATTVTGEPFPERATIQAMAFVVSVGTLLIQGWTLPLLIRKLRLSRFSDDHAADREEELKAERVVHDAADEVLTEFGANPPRGMDPGVLADIRAAIARQSQDADEMPDPEAPTKRAEVFSRLYRDVLRAQREALIVERDEGRIEDEAARAMLERLDLQEAGVSARLESRF
>NZ_AP022588.1|WP_163800423.1|5147404_5149126_+|AAA-family-ATPase
MRNYKGFEQFSLKLASKTSILVGPNNAGKSTAIGALRLAAQLINYAKLRKTEFVAEDKIRRRSIHAYRLSSAAPGFIDENVAYEFRDVEARIEIHFKNKSAIYVSWPLEDGAYFYLEHIPGAQPPNIKVVRRDYPSVGVIQTLTPVEHREQILSTEYVRKRQGSRLASRHFRNQLYAVQENDPTAYMEFQRFALTHTPEIATLDLFRSTLAPELDLFYTEPKSRVEKELFWAGDGLQIWLQLLYHIWRHQDVSSIIIDEPDVYLHPDLQRRLVQILDESQLQVILATHGPEVLAESNRESVIVLDRARRSSKRITNDAELSTLNNALGSGFNLRLAKALRSRAALFVEGQDMKLLSNIAKTVGADRFYREDGLTVVPMGGSSKRKLAESFGFLNSTLLDSSVRVAVLLDRDFMSDEEVAEIVADFKTNDVYAHIWSASEIENYLLSSSALARATSLEDSVVHRLLDQALELLKEEIYGQLLAKQLQASRSTGEHASSTATRTRRQFESDWSGDIEYKLRVAPGKDVLSTLNKLLQDSGGKSVSARKLSSLLRVHEIPAEMRETIIRVESMLSE
>NZ_AP022588.1|WP_163800424.1|5149143_5149938_-|Fpg/Nei-family-DNA-glycosylase
MPEGHTLHRLARLHQKRYAGAPVEVTSPQGRFVEGAASVSGRVMRRASAWGKHLFHDYEGGLIVHVHLGLYGKFTERRIPMPAPVGQVRMRMEGAEYGTDLRGPTACEVLHRAEVDEIIARLGPDPLRRSPDVGKAWSRITKSRRPIGSLLMDQSVIAGIGNVYRNELLYRHLIDPHRPGTHVDEAEFSEAWTDLVALMKVGVSRGKIITIRKADDKGPAPSRAGRQRSYVYRRAGDACRICGDTIRTEVMEGRNLFWCPTCQT
>NZ_AP022588.1|WP_174266875.1|5149941_5150430_-|ribose-5-phosphate-isomerase
MTAMRVYLGADHAGFELKQAIVEHLRAGGHDPVDCGAFAYDAQDDYPAFCIAAATRTVADPGSLGIVVGGSGNGEQIAANKVPGVRCALGWSVETAQLARQHNNAQVIGIGGRMHSTADALAIVDAFLSASWSEEPRHQRRIDILADYEKTHVAPPVPGTPA
>NZ_AP022588.1|WP_163800426.1|5150491_5152180_-|LpqN/LpqT-family-lipoprotein
MPLENGAPFAGYTVRRLLGRGGMGDVYLVEHPRLPRLDALKVLRENPEVNDEYRERFNREAELAATLWHPHIVGLHDRGEFQSRLWISMDYVDGTDAARLQRDRFPRGVPLEFVTSIVESVASALDYAHGRGLLHRDVKPANILIGEGGGIRRILLSDFGIARMIGHVSGLTAANTTVGTVAFSAPEQLMNGFIDGRADQYSLAATAFRLLTGTSPFRESNPVAVISAHLQAPPPRVGMVRPDLAPLDDVLMKAMAKNPDDRFATSGQFAQAFAERAAAILGMGSGRPPGAPPPVQAVPPVGSVSGQLVFAPAPRRTRKWPAIAAGVVVVALVAAGSVVALNSGEDASTAASTTARSSTSRTTSSTADAPPTLSPPILVGTPGKYQTIANYLDSRKITTEFQHRGDGNAPTVTLPIPEDKRWHDGGLDTPNFAYEMLVYNLDAPFAGPYPPFVVSTVLKLIGNVDPQSLFLRASGDLNNRPGFVPDNPGRTGYLSGHPEFSLSGTWDRDPGVRQILGQKIVLCKWRQGYYLIQIDFIAAPEDRAIFESAMAAVDDRIVIIGP

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Crispr_ID: NZ_AP022588_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022588_4

5370837-5370950

Orphan

Consensus_repeat	Method
CGCGTGTCGCGTCGCCAGATGCACACTCGAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP022588_4

>merge|NZ_AP022588|4|5370837-5370950|CRISPRCasFinder
CGCGTGTCGCGTCGCCAGATGCACACTCGAGTGGGTCTCCCGGCCAGGAAACGGCTTCAGTGTGAATCTCACGACGCCCGACCCGCGTGTCGCGTCGCCAGACGCACACTCGAG

>NZ_AP022588|4|4|5370837-5370950|CRISPRCasFinder
CGCGTGTCGCGTCGCCAGATGCACACTCGAG	TGGGTCTCCCGGCCAGGAAACGGCTTCAGTGTGAATCTCACGACGCCCGACC
CGCGTGTCGCGTCGCCAGACGCACACTCGAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022588.1\|WP_163802119.1\|5372652_5373624_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022588.1\|WP_163800606.1\|5364417_5366784_+\|flippase-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|377103
NZ_AP022588.1\|WP_163802121.1\|5375610_5376210_-\|RdgB/HAM1-family-non-canonical-purine-NTP-pyrophosphatase	unknown	unknown	gnl\|CDD\|234648
NZ_AP022588.1\|WP_163800610.1\|5371140_5371917_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373112
NZ_AP022588.1\|WP_163800615.1\|5377993_5378728_-\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|366759
NZ_AP022588.1\|WP_163800611.1\|5371897_5372278_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226944
NZ_AP022588.1\|WP_163800612.1\|5372274_5372646_+\|DUF3817-domain-containing-protein	unknown	unknown	gnl\|CDD\|378962
NZ_AP022588.1\|WP_163800602.1\|5359914_5360736_+\|mycofactocin-coupled-SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|274889
NZ_AP022588.1\|WP_163800605.1\|5362586_5364368_+\|penicillin-binding-protein	unknown	unknown	gnl\|CDD\|223839
NZ_AP022588.1\|WP_163800607.1\|5366839_5367286_+\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|176863
NZ_AP022588.1\|WP_163800601.1\|5359081_5359918_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|180446
NZ_AP022588.1\|WP_163800613.1\|5376206_5376989_-\|ribonuclease-PH	unknown	unknown	gnl\|CDD\|178914
NZ_AP022588.1\|WP_163800609.1\|5369158_5370796_+\|peptide-chain-release-factor-3	unknown	unknown	gnl\|CDD\|226593
NZ_AP022588.1\|WP_163802120.1\|5373677_5375531_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341047
NZ_AP022588.1\|WP_163800608.1\|5367278_5369099_+\|sulfatase-like-hydrolase/transferase	unknown	unknown	gnl\|CDD\|293759
NZ_AP022588.1\|WP_174267002.1\|5361249_5362506_+\|multidrug-effflux-MFS-transporter	unknown	unknown	gnl\|CDD\|340878
NZ_AP022588.1\|WP_163800600.1\|5357826_5359080_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022588.1\|WP_163800603.1\|5360709_5361177_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_AP022588.1\|WP_163800614.1\|5377045_5377819_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293802
NZ_AP022588.1\|WP_163800616.1\|5378690_5379662_-\|cysteine-synthase	unknown	unknown	gnl\|CDD\|273463

Protein	Function_ID	Function_description	E-value
NZ_AP022588.1\|WP_163800606.1\|5364417_5366784_+\|flippase-like-domain-containing-protein	gnl\|CDD\|377103	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region. LPG_synthase_TM is the N-terminal region of this family of bacterial phosphatidylglycerol lysyltransferases. The function of the family is to add lysyl groups to membrane lipids, and this region is the transmembrane domain of 7xTMs. In order to counteract attack by membrane-damaging external cationic antimicrobial molecules - from host immune systems, bacteriocins, defencins, etc - bacteria modify their anionic membrane phosphatidylglycerol with positively-charged L-lysine; this results in repulsion of the foreign cationic peptides.	3.32787e-22
NZ_AP022588.1\|WP_163802121.1\|5375610_5376210_-\|RdgB/HAM1-family-non-canonical-purine-NTP-pyrophosphatase	gnl\|CDD\|234648	PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed.	3.90616e-96
NZ_AP022588.1\|WP_163800610.1\|5371140_5371917_+\|hypothetical-protein	gnl\|CDD\|373112	pfam14528, LAGLIDADG_3, LAGLIDADG-like domain. This domain is part of the LAGLIDADG superfamily.	0.00461597
NZ_AP022588.1\|WP_163800615.1\|5377993_5378728_-\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|366759	pfam01694, Rhomboid, Rhomboid family. This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite.	5.77969e-24
NZ_AP022588.1\|WP_163800611.1\|5371897_5372278_+\|hypothetical-protein	gnl\|CDD\|226944	COG4578, GutM, Glucitol operon activator [Transcription].	6.72877e-35
NZ_AP022588.1\|WP_163800612.1\|5372274_5372646_+\|DUF3817-domain-containing-protein	gnl\|CDD\|378962	pfam12823, DUF3817, Domain of unknown function (DUF3817). This domain is of unknown function. It is sometimes found adjacent to pfam07690 and pfam03176 which are both transporter domains.	4.44723e-26
NZ_AP022588.1\|WP_163800602.1\|5359914_5360736_+\|mycofactocin-coupled-SDR-family-oxidoreductase	gnl\|CDD\|274889	TIGR03971, short-chain_dehydrogenase/reductase_SDR, SDR family mycofactocin-dependent oxidoreductase. Members of this protein subfamily are putative oxidoreductases belonging to the larger SDR family. All members occur in genomes that encode a cassette for the biosynthesis of mycofactocin, a proposed electron carrier of a novel redox pool. Characterized members of this family are described as NDMA-dependent, meaning that a blue aniline dye serving as an artificial electron acceptor is required for members of this family to cycle in vitro, since the bound NAD residue is not exchangeable. See EC 1.1.99.36. [Unknown function, Enzymes of unknown specificity].	1.76166e-122
NZ_AP022588.1\|WP_163800605.1\|5362586_5364368_+\|penicillin-binding-protein	gnl\|CDD\|223839	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane].	1.85273e-57
NZ_AP022588.1\|WP_163800607.1\|5366839_5367286_+\|SRPBCC-family-protein	gnl\|CDD\|176863	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate blocks substrate access to the phosphatase active site. A conserved Trp from PP2C inserts into PYL to lock the receptor in a closed formation. This group also contains Methylobacterium extorquens AM1 MxaD. The mxaD gene is located within the mxaFJGIR(S)ACKLDEHB cluster which encodes proteins involved in methanol oxidation. MxaD may participate in the periplasmic electron transport chain for oxidation of methanol. Mutants lacking MxaD exhibit a reduced growth on methanol, and a lower rate of respiration with methanol.	4.43662e-20
NZ_AP022588.1\|WP_163800601.1\|5359081_5359918_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|180446	PRK06180, PRK06180, short chain dehydrogenase; Provisional.	2.32238e-145
NZ_AP022588.1\|WP_163800613.1\|5376206_5376989_-\|ribonuclease-PH	gnl\|CDD\|178914	PRK00173, rph, ribonuclease PH; Reviewed.	1.74165e-163
NZ_AP022588.1\|WP_163800609.1\|5369158_5370796_+\|peptide-chain-release-factor-3	gnl\|CDD\|226593	COG4108, PrfC, Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis].	0
NZ_AP022588.1\|WP_163802120.1\|5373677_5375531_-\|MFS-transporter	gnl\|CDD\|341047	cd17504, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide)-like multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This subfamily is composed of putative multidrug resistance (MDR) transporters including Chlamydia trachomatis antiseptic resistance protein QacA_2, and Serratia sp. DD3 Bmr3. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. This subfamily belongs to the Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters (MMR-like MDR transporter) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	6.99559e-64
NZ_AP022588.1\|WP_163800608.1\|5367278_5369099_+\|sulfatase-like-hydrolase/transferase	gnl\|CDD\|293759	cd16035, sulfatase_like, uncharacterized sulfatase subfamily. Sulfatases catalyze the hydrolysis of sulfate esters from wide range of substrates, including steroids, carbohydrates and proteins. Sulfate esters may be formed from various alcohols and amines. The biological roles of sulfatase includes the cycling of sulfur in the environment, in the degradation of sulfated glycosaminoglycans and glycolipids in the lysosome, and in remodeling sulfated glycosaminoglycans in the extracellular space. The sulfatases are essential for human metabolism. At least eight human monogenic diseases are caused by the deficiency of individual sulfatases.	2.5269e-104
NZ_AP022588.1\|WP_174267002.1\|5361249_5362506_+\|multidrug-effflux-MFS-transporter	gnl\|CDD\|340878	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as MdfA (also called chloramphenicol resistance pump Cmr), EmrD, MdtM, MdtL, bicyclomycin resistance protein (also called sulfonamide resistance protein), and the uncharacterized inner membrane transport protein YdhC. EmrD is a proton-dependent secondary transporter, first identified as an efflux pump for uncouplers of oxidative phosphorylation. It expels a range of drug molecules and amphipathic compounds across the inner membrane of E. coli. Similarly, MdfA is a secondary multidrug transporter that exports a broad spectrum of structurally and electrically dissimilar toxic compounds. These MDR transporters are drug/H+ antiporters (DHA) belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.67332e-85
NZ_AP022588.1\|WP_163800614.1\|5377045_5377819_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293802	cd07716, RNaseZ_short-form-like_MBL-fold, uncharacterized bacterial subgroup of Ribonuclease Z, short form; MBL-fold metallo-hydrolase domain. The tRNA maturase RNase Z (also known as tRNase Z or 3' tRNase) catalyzes the endonucleolytic removal of the 3' extension of the majority of tRNA precursors. Two forms of RNase Z exist in eukaryotes, one long (ELAC2) and one short form (ELAC1), the former may have resulted from a duplication of the shorter enzyme. Only the short form exists in bacteria. Members of this bacterial subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	1.56101e-71
NZ_AP022588.1\|WP_163800603.1\|5360709_5361177_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.4009e-12
NZ_AP022588.1\|WP_163800616.1\|5378690_5379662_-\|cysteine-synthase	gnl\|CDD\|273463	TIGR01136, Cysteine_synthase, cysteine synthase. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff. [Amino acid biosynthesis, Serine family].	1.02592e-135

>NZ_AP022588.1|WP_163800609.1|5369158_5370796_+|peptide-chain-release-factor-3
MTDIAADAPAVDGPAAERVAAQARRRRTFAVISHPDAGKSTLTEALVLHANAITEAGAIHGKSGRRSTVSDWMDMEKARGISITSTALQFPYATAGQDCVINLLDTPGHADFSEDTYRVLTAVDCAVMLIDAAKGLEPQTLKLFQVCRHRRIPIITVINKWDRPGRDPLELIDEINERIGLRPTPLTWPVGIAGDFKGVLDRRTGNFIRFTRTAGGATAAPEEHLTPEKAHESAGIDWDRAVEESELLEADGADYDRDTFLGCESSPLLFTSAALNFGVNQLLDVLVQIAPPPSGQVSVEGTRRPPAAPFSAFVFKVQAGMDSSHRDRIAYARVCSGTFERGEVLTHATTGKPFVTKYAQSVFGRERTTLDTAWPGDVIGLANANALRPGDTLYRDIPVVYPPIPSFSPEYFSVARGKDPSKHKQFRRGIEQLEQEGVVQVLRSDRRGDQAPVLAAVGPMQFEVATHRMASELSAPIELESLPYTVARVIDPKDAEFMQRQHSTEVMTRTDGVMLALFSTKWRLEGFQRDNPDIELGSLVAAADD
>NZ_AP022588.1|WP_163800608.1|5367278_5369099_+|sulfatase-like-hydrolase/transferase
MADFHDAPDVVIIMTDEERATPPYESADVLAWRERALPGRRWFDEHGVRFDRHYTGSLACVPSRPTIFTGHYPDLHGVTQTDGIGKRFDDSRLRWLRRGEVPTLGNWFRAAGYDTHYDGKWHVSHADLTDPETGGSLATNDDDGVVDAAAVQRYLDADPLADFGFAGWVGPEPHGALLSNSGFRRDPLIADRVVAWLSDRYERRRTGDEDARRPFLLVASFVNPHDIVLFPAWLRRNPLPPSAAEPPHVPPAPTADEDLAGKPAAQIAFREAYYTGYGAGPMVERAYTRNAQRYRDLYYRLHAEVDDPIDRVRRAVTEGGSERAVLVRTADHGDLLGAHGGLHQKWFNLYDEATRVPFVIARIGDGATTARRVTAPTSHVDLVPTLLGAAGVDVDAVAAGLAASFTEVHRLPGRDLMPVVDGASADEDRAVYLMTRDNVLEGDTGASAGARQLGLEKSPPAPLRIQVPAYVAANFEGLVVRVDDADAPGGAGHLWKLVRTFDDPSTWTEPGVRHLEANGLAGEAYRTEPLDDQWELYDLTDDAVEAQNRWTDPDLFEVRRHLRTRLKQSRAESVPERNRPWPYVDRRPAVPESLVREVVGRIRRRI
>NZ_AP022588.1|WP_163800607.1|5366839_5367286_+|SRPBCC-family-protein
MAEISRRRTIAASQQDVWDVLADFGALATWVDDADHSSILRHGADGLLGTSRRVQMGRNALVETITVADAPHTIGYDIVGLPSLAGRLNNRWTLRPSTGATEVTLTSTVSPVGGPLGRIVAAAVSRVMARKSDAMLDGLARRLEDNHG
>NZ_AP022588.1|WP_163800606.1|5364417_5366784_+|flippase-like-domain-containing-protein
MRVDGRDIIVSGSLLQPLHRRTNDILRLTFALVFLVVIVTSSLVTRRDWVALERSISDIVGVLTPTQSNLVYLVYGIAIMALPFVILIGLIVTRQYKLLGAYAAAGLIAILALSITANGIAAPRWHFDLSDRLNTTLSQFLDDPRWIAMLAAVLTVSGPWVPARWRRWWWTLLLAFVPIHLVVSAVVPARTLLGLSVGWFVGALTVLIVGTPALEVPLVGAVRALGRRACTVSALRVVRPAGPGPLVLSADCMDGDSSAVVELYGPNQRSGGALRQLWRFLTLRNDETAPLQTSMRRAVEHRALMAIAVDDLGLSNTRTLAVAALDRGWTLYAHSEARGEVLSRAAPVAAAWTSLRGLHEHQISHGDLRAVAITVSDDTALFGGFGNAEYGASDTQLQSDVAQLLVTSTALWGAEPTVTSAIETFGRDAVLDASARLSKSAMPQRLRQSVPDVKTVMSSARDEVKGQTGADRIRAETITRFSRSQLIQMVLLVALVYVAYPFISTVPAFFSELSTANWWWALLGLAVSALTYVGAAAALWACASEKVNFRNLTIMQVANTFAATTTPAGVGGLALSTRFLQKSGLGALRATAAVALQQSVQVITHLTLLVFFTAVAGASANLSHFVPSTTVLYLIGGAALGIVGTFLFLPTARRWLATAVRPRLSEVAHDLVELASEPKRLALIVLGCGATTLGAALALWASIEAFGGDTSFVTVTVVTMIGGTLASAAPTPGGVGAVEAALIGGLAAFGVPAAIAVPSVLLYRVLTCWLPVFIGWPVMRWLTKNDMI
>NZ_AP022588.1|WP_163800605.1|5362586_5364368_+|penicillin-binding-protein
MTRRCLSTLLLCALLLGSAGCSLFGGKGPQDAFAAFADAVQRKDAGAAAADTSDPNAAAPVITWMFDGMGKNATLTVQSAEAGDDENRATLTYTWTFGPDKSLRYDVNATATQQGDDWRVQWTPTVLHPDLAPGKTFQYSDDKNYLTPVTDRDGQPLMSWQTVGVVTLTRANLASAAQLAPLLQQFAPTITDATIAEQFAGTQDDAVTVVRLRKTDLDVVRDQLAQIPGVTVAEQGALLTDNRDLSSPAIAGLQEIWQQRIDAAAGWSVMLVDEEGRPTDQLASTPPRDTPPVRTTLDLRMQLLAQQAVATEPRPAVIVAISPGTGGILVAAQNAAANAQGPIAFSGSYPPGSTFKTITTAAALEAGIATPDSPQACPGRVTVENRTIPNDDEFDLGTVPLTTAFAKSCNTTMAVLSDELPADALPKMAKLFGIGVDYVVPGLTTITGTVPNADTPAQKVENGIGQGTVTVSPFGLAVAEASLGHGSTITPTLVVDEKTTADTQSQPIPPTVVDSLRAMMTQTVADGTATALRDVPGLGGKTGTAEFGDNTSSHGWFAGIVGDIAFATLVVGGDTSTPAVTITGDFLRPAVAG
>NZ_AP022588.1|WP_174267002.1|5361249_5362506_+|multidrug-effflux-MFS-transporter
MDTPLDAHPAPTRTGPNATQAITPALLVTLALLSAVAPFATDLYLPAFPAMVADLDTSATAVQLTLTAFLLGLAVGQLLFGPLSDRYGRVRPMLAGAAVCVLASAATVFAPNVEVLIGARFAQGVAGAAGMVIGRAIIADLATGKAAARAFSLMMIVGGVAPVIAPLAGGFLVGPIGWRGALAVILVLSTLMLLAVLLVVRETHTEHRRAALRESRSTLGSPLRDLLGRAYLGHALAFCGAFATMMAYISASPFIYQTMMGLSAGQYGAMFGVNALALLAMSALSARLASRVEVRRVAAVGVASISIATVVLLALSLSGVPAGWLALPLLVIVGSMGLVFGNVTALALGAAPRAAGTASAVLGALQFGVAAAVSPLVSIAGEHTAVPAAIVMLCTSTLAVAAYLVAGRPGRSVPEATR
>NZ_AP022588.1|WP_163800603.1|5360709_5361177_-|MarR-family-transcriptional-regulator
MSASDDDHIDGRYADLADVVLALARTISADAHADPGVVDLTATEINVMRFVDRHPGASPSTVAAATGLHRSNLSRALRDLEAKGMIDRVADAADGRQARLVPTDRAARNLARLRASWSRLLSSAGADDDDLGSALRLLTRLETGLARSAQRETGV
>NZ_AP022588.1|WP_163800602.1|5359914_5360736_+|mycofactocin-coupled-SDR-family-oxidoreductase
MTAGTLDGKVAFVTGAARGMGRAHAVRLAGEGADVIALDVCAEFDSTDYHGATADDLATTVELVERLGRRILARQADVRDVDAVDSVVADGLAEFGRLDVVIANAGIIRVTDADDRRSTFREIVDVNLVGVWNTVDACIPALVDGGRGGSIVLTSSTQGIKASGTDRPGLQAYAASKRALVALMQGWAMQLAPHSIRVNTIHPSGVATDMILNEATMALAAANDPWLGTQQNALPIALVAPEEIAAAVAWLVSDSGRFITGTSWPLDAGFTLR
>NZ_AP022588.1|WP_163800601.1|5359081_5359918_+|SDR-family-NAD(P)-dependent-oxidoreductase
MARWLITGCSTGIGREIARAALDAGHSVVVTARRTESVSDFADDFGDRAVVVALDVTDSGQIAAAVRAAEDAFGGIDVLVNNAGNGYLSAIEEGEDHLVRKLFDTNYFGVVDTIKAVLPGMRAQRSGHIVNISSMTGLVANPPNAYYSSTKFALEALTEALAQEVEPLGIKVTAIEPGAFRTDWAARSMWESSTPISAYDENVGARKTLIKEFANHLPGDPRKVAEAVLMVTTLDEPPLRLLLGRDVLKAVRDKLAAFSASIDEWESVTKDVDFPRPS
>NZ_AP022588.1|WP_163800600.1|5357826_5359080_+|hypothetical-protein
MNPHDDHPVATASQHEQEIAALELIEHPTVTAAYRSVAETWLGRAKASDQMRSCFDAAFAEVMFSAAVWSSNQDELRPKVSCITRLGHPLDGRRIPGSRWGIDNPDSVYRVIPISGDERYEIHGSVGEHRMTENYFTLWDANMGTVAVLDGRTMEVDSDGGFTVTVDSDPAGDRPNHVQSTPEAREFYIRDVLLDWGRDDPNHLSVRRLGGAPTRPARTVDEQADATADMMAYFANFTGKLSHGVYKMAPNQFDLAWSADTVGAMRNQVYVMGRFDLAPGEAFVVDVHDGGAEYFTVPLSNVWGTTLDVVDRTGSLNKAQSVAGEDGGYTYVISPTDPGVANWIDSDGMTEGILTLRMAEFGPEGPTEDLGARGRVVRLDDLERDVPGLRRVSPSERQTELADRRAAYLRRLPEWTA
>NZ_AP022588.1|WP_163800610.1|5371140_5371917_+|hypothetical-protein
MRSAEEFDEVQRLISAGQSDDDISRATGIPRTTVHGWRTRPPLSVRRPRGSSPCGVGHDFSTLPAAQYAYLLGVYLGDGCISRARRVWRLRIACDAKYPGIIDLCRTSMNLVMPGQRAAVQRLPKNCVQVSMYSKHWPCLFPQHGPGRKHTRLIALEPWQQDLVDQATEEFVRGLIHSDGCRVVANDRGVTSVRYHFSNRSEDIIGLFTAALDRLGIHWTRSDDHTVSIYRKADTTALDAFIGPKALAVPWTDVHYTA
>NZ_AP022588.1|WP_163800611.1|5371897_5372278_+|hypothetical-protein
MSTTRRRRPALILLVCLGAAGCMALAWWQWTRYESNSGSFQNLGYALQWPMFAGFCFYAYFKFVRYEEAPPPSTHRDGITEIPAGLLPERPKPTQTDDDPTLAEYNAYLAELAAQSDRDADDRTTP
>NZ_AP022588.1|WP_163800612.1|5372274_5372646_+|DUF3817-domain-containing-protein
MTTPEPESRTDTTPATVTSASTDSIRKALKGYRIFAWVTGVWLIALCYEMVLKYGFGDDSLSWIAVVHGWVYFVYLLFAANLAVKVRWPIGKTVGVLLAGTIPLLGIVVEHFQTKRIKADFGV
>NZ_AP022588.1|WP_163802119.1|5372652_5373624_-|hypothetical-protein
MAIVLQDDSIEFHFPEVHPSARMEVTFHRTVRVPDDGVGYGLPAGLGHFPLRRVADLPAAPGPFQRTGGLVMPMWQSEACWLSFSARGGYPFAVTVGAGGVNAVTGGTWSPTPDFEAEDYFEVPEQPWLDGFCTGSGVVRQFVAMPLGSGYTVEEQVTRTAAVGGIQIAVMPLKGSVYDERYVEPDADCLDGSLCMAAPAGAAMGMGAGGSITQSIATPVEPSENWESTSASSVSVHLANSVHWLEMTGEEPPTLPLSAADYTRQGMPWFDWYDDTLARAGSATLAGVVGVAELGRELGERPLPENESFEPPEPVVLGPALTA
>NZ_AP022588.1|WP_163802120.1|5373677_5375531_-|MFS-transporter
MSPSSVHPSLLIAVLAAAGISVSLMQTLIIPLLPELPKLLDSSASDASWAITATLLTAAVATPVFGRLGDVYGPKPMLVTCALMLIAGSLIAATTSSLVPLVVGRGLQGFGIPIIPLGISVLRTCVPAERVGSAMGLMSASLGVGGALGLPLSAVIAQHYDWHMLFWFATALGVLALAMFTFLVPHVPSRSTDRLDPLGALLLAGGLVTLLLGISKGQTWGWTSGPTLAMFGSSAVILAVFVWWQLRVASPTVDLRTTMRRPVLATNVASIAVAFGMFGLSLVAPQILEMSIDTGYGLGQSMLATGLWMAPGGLAMMVTSPIAARIAAVRGPRFTLVIGAAVISASYAAGLFLLAAPWQVMVLNVLVSVGVGFAYASMPALIIAAVPVSETAAANGINALARSLGTSISSAVIGAILAGMTVSLAGRDVPSMAGFRTALVVAAVVAALAAVLALLIPVTRAEVEAAESWEPSDPGTASSLILLGRHSDAEAIDTASLDGHSNLVMRRIDEAGSLSLHQLATATGLDVPTAGRHVTDLLRHGLASGTGRVQPGGSPVFYLTPRGFERLHRLRDTNHDEAQGWSAFDVEALSAYADRLAVSIDADHGRVGGAAPPVAQP
>NZ_AP022588.1|WP_163802121.1|5375610_5376210_-|RdgB/HAM1-family-non-canonical-purine-NTP-pyrophosphatase
MTALLVASRNAKKLAELRRVLDAAGVTGLHLLPLDDVPAFDEAPETGATFEENALAKARDAFRATGLAAVADDSGIAVDALNGMPGVLSARWSGVHGDDARNTELLLGQLRDVPAERRGAAFVSACALVSPAGETVVRGEWPGAVGVEPRGSGGFGYDPVFVPEGSSRSAAELTPQEKDAASHRGRALALLVPALRALV
>NZ_AP022588.1|WP_163800613.1|5376206_5376989_-|ribonuclease-PH
MSRREDGRLDDELRPVTITRGFTTHPAGSVLVQFGETRVMCTASVTEGVPRWRKGSGQGWLTAEYAMLPAATHDRSDRESVKGRVGGRTQEISRLIGRSLRACIDLGALGENTIALDCDVLQADGGTRTAAITGAYVALSDAVTYLAAGNKLSDPRPLSCAIAAVSVGVVDGRVRVDLPYTEDSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKMLDLAMASCEQLFVIQNAALALPYPGVLPEPTGPTKKAFGS
>NZ_AP022588.1|WP_163800614.1|5377045_5377819_-|MBL-fold-metallo-hydrolase
MGVRITVLGCSGSVTGPDSPASGYLLTAPDTPPLVLDFGGGVLGALQRHADPGTVSVLLSHLHADHCLDLPGLFVWRRYHPTPPQGRALMYGPEATWARLGAASSPEGREIDDFTDIFDVRRWVDAEPVQIGTLSVLPRLLCHPTESYGMRFTDPDGATFVYSGDTGYCDELIDLARDADVFLCEASWTHTPDRPPKLHLSGTEAGRAAANAGVKELLLTHIPPWTSREDVIGEAKAEFDGPVHAVVCDETFDVVAH
>NZ_AP022588.1|WP_163800615.1|5377993_5378728_-|rhomboid-family-intramembrane-serine-protease
MPRTRWRGSYGHDGEVRLERGPPVTIPGYPPPASPGPTKRPTWLVGGATIVSFVALLYVIEVWDNLTGHRLDYNGIRPLESDGLWGIVFAPLLHSNWEHLIANTGPALVLGFLMTLAGMARFIYATAIVWILGGFGTWLIGNSGAPPGVETNHIGASGLIFGWLTFLIVFGFFTRKVWEIVVGVIVLFVYGSVLLGVLPGTFGVSWQGHLCGAIAGVVAAYLLSGPEREERQRRKGSAAPRLGV
>NZ_AP022588.1|WP_163800616.1|5378690_5379662_-|cysteine-synthase
MARYDSLLQALGGTPLVGLQRLSPRWADGPDGPHVRLWAKLEDRNPTGSIKDRPALRMIEQAERDGLLAPGATILEPTSGNTGISLAMAAVLKGYRLICVMPENTSIERRQLLELYGAEIIYSPAEGGSNTAVATAKELAAEHPEWVMLYQYGNPANAAAHYDGTGPELLADLPEITHFVAGLGTTGTLMGAGRFLREHVPGVQIVAAEPRYGEGVYALRNIDEGFVPELYDPEVLTTRYSVGAFEAIKRTREIVEVEGIFAGISTGAILHAALGMGAKAIKAGERADIAFTVCDAGWKYLSTGAYTGSLDDAEDSLEGQLWA

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Crispr_ID: NZ_AP022588_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022588_5

6234646-6234777

Orphan

Consensus_repeat	Method
CCCGAGCTGCCCCCGCCGCCGCCCGAGGCCGCCGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP022588_5

>merge|NZ_AP022588|5|6234646-6234777|CRISPRCasFinder
CCCGAGCTTCCTCCCCCGCCGCCCGCGCCCGAGCTGCCCCCGCCGCCGCCCGAGGCCGCCGCACCGCTCGACGCACCGCTGCCCCCGCCGCCCGCACCCGAGCTGCCCCCGCCGCCGCCCGAGGCGGCCGCA

>NZ_AP022588|5|5|6234646-6234777|CRISPRCasFinder
CCCGAGCTTCCTCCCCCGCCGCCCGCGCCCGAGCTG	CCCCCGCCGCCGCCCGAGGCCGCCGCACCGCTCGACGCACCGCTGCCCCCGCCGCCCGCA
CCCGAGCTGCCCCCGCCGCCGCCCGAGGCGGCCGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022588.1\|WP_163802219.1\|6231471_6231882_-\|cold-shock-domain-containing-protein	unknown	unknown	gnl\|CDD\|224197
NZ_AP022588.1\|WP_163801324.1\|6235993_6236485_-\|MogA/MoaB-family-molybdenum-cofactor-biosynthesis-protein	unknown	unknown	gnl\|CDD\|238451
NZ_AP022588.1\|WP_174266902.1\|6236954_6237158_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022588.1\|WP_163801321.1\|6232436_6233489_+\|GTP-3',8-cyclase-MoaA	unknown	unknown	gnl\|CDD\|234672
NZ_AP022588.1\|WP_163802220.1\|6233494_6233743_+\|MoaD/ThiS-family-protein	unknown	unknown	gnl\|CDD\|340452
NZ_AP022588.1\|WP_163802221.1\|6245985_6246597_+\|DUF2505-family-protein	unknown	unknown	gnl\|CDD\|378476
NZ_AP022588.1\|WP_163801320.1\|6232035_6232440_+\|YccF-domain-containing-protein	unknown	unknown	gnl\|CDD\|236975
NZ_AP022588.1\|WP_163802218.1\|6230550_6231429_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380141
NZ_AP022588.1\|WP_163801317.1\|6225918_6226374_+\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|176854
NZ_AP022588.1\|WP_163801327.1\|6245747_6245939_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022588.1\|WP_163801326.1\|6245301_6245613_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022588.1\|WP_163801319.1\|6229427_6230432_-\|glutathione-S-transferase-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|223512
NZ_AP022588.1\|WP_163802216.1\|6226378_6227173_-\|DUF3027-domain-containing-protein	unknown	unknown	gnl\|CDD\|378605
NZ_AP022588.1\|WP_174267020.1\|6236481_6236907_-\|cyclic-pyranopterin-monophosphate-synthase-MoaC	unknown	unknown	gnl\|CDD\|236483
NZ_AP022588.1\|WP_163801318.1\|6228932_6229424_+\|DUF2771-family-protein	unknown	unknown	gnl\|CDD\|378520
NZ_AP022588.1\|WP_163801323.1\|6235542_6235968_-\|molybdenum-cofactor-biosynthesis-protein-MoaE	unknown	unknown	gnl\|CDD\|238385
NZ_AP022588.1\|WP_174267019.1\|6227367_6228936_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863

Protein	Function_ID	Function_description	E-value
NZ_AP022588.1\|WP_163802219.1\|6231471_6231882_-\|cold-shock-domain-containing-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	1.24142e-22
NZ_AP022588.1\|WP_163801324.1\|6235993_6236485_-\|MogA/MoaB-family-molybdenum-cofactor-biosynthesis-protein	gnl\|CDD\|238451	cd00886, MogA_MoaB, MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.	1.34899e-54
NZ_AP022588.1\|WP_163801321.1\|6232436_6233489_+\|GTP-3',8-cyclase-MoaA	gnl\|CDD\|234672	PRK00164, moaA, GTP 3',8-cyclase MoaA.	1.48064e-171
NZ_AP022588.1\|WP_163802220.1\|6233494_6233743_+\|MoaD/ThiS-family-protein	gnl\|CDD\|340452	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins. MoaD, also termed molybdopterin synthase sulfur carrier subunit, or MPT synthase subunit 1, or MPT synthase small subunit, or molybdopterin-converting factor small subunit, or molybdopterin-converting factor subunit 1, is a conserved small sulfur carrier protein that has beta-grasp ubiquitin-like (Ubl) fold involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. MoaD is activated in an ATP-dependent manner by sulfurtransferases similar to the activation mechanism of ubiquitin-activating enzyme E1.	2.06068e-15
NZ_AP022588.1\|WP_163802221.1\|6245985_6246597_+\|DUF2505-family-protein	gnl\|CDD\|378476	pfam10698, DUF2505, Protein of unknown function (DUF2505). Members of this family are all Actinobacteria. The function is not known.	3.67434e-25
NZ_AP022588.1\|WP_163801320.1\|6232035_6232440_+\|YccF-domain-containing-protein	gnl\|CDD\|236975	PRK11770, PRK11770, YccF domain-containing protein.	1.79364e-53
NZ_AP022588.1\|WP_163802218.1\|6230550_6231429_+\|hypothetical-protein	gnl\|CDD\|380141	pfam18741, MTES_1575, REase_MTES_1575. Vsr REase Fold. Fused to HEPN (SWT1/Abi2 family), along with Transglutaminase and wHTH.	2.93996e-06
NZ_AP022588.1\|WP_163801317.1\|6225918_6226374_+\|SRPBCC-family-protein	gnl\|CDD\|176854	cd07812, SRPBCC, START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.	1.69446e-19
NZ_AP022588.1\|WP_163801319.1\|6229427_6230432_-\|glutathione-S-transferase-C-terminal-domain-containing-protein	gnl\|CDD\|223512	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	4.13542e-142
NZ_AP022588.1\|WP_163802216.1\|6226378_6227173_-\|DUF3027-domain-containing-protein	gnl\|CDD\|378605	pfam11228, DUF3027, Protein of unknown function (DUF3027). This family of proteins with unknown function appears to be restricted to Actinobacteria.	2.42545e-107
NZ_AP022588.1\|WP_174267020.1\|6236481_6236907_-\|cyclic-pyranopterin-monophosphate-synthase-MoaC	gnl\|CDD\|236483	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC.	7.79894e-74
NZ_AP022588.1\|WP_163801318.1\|6228932_6229424_+\|DUF2771-family-protein	gnl\|CDD\|378520	pfam10969, DUF2771, Protein of unknown function (DUF2771). This bacterial family of proteins has no known function.	4.00915e-49
NZ_AP022588.1\|WP_163801323.1\|6235542_6235968_-\|molybdenum-cofactor-biosynthesis-protein-MoaE	gnl\|CDD\|238385	cd00756, MoaE, MoaE family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor for a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), which carries the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase in the second major step in Moco biosynthesis. MPT synthase is a heterotetramer consisting of two large (MoaE) and two small (MoaD) subunits.	1.22819e-40
NZ_AP022588.1\|WP_174267019.1\|6227367_6228936_+\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.16329e-26

>NZ_AP022588.1|WP_163802220.1|6233494_6233743_+|MoaD/ThiS-family-protein
MHVTVRYFAAARAAAGVETEELDVPPDTTVDGLVEHLSKRGPDLANVLLRCSFLRDGIAVRDRGARLQTLQTVDVLPPFAGG
>NZ_AP022588.1|WP_163801321.1|6232436_6233489_+|GTP-3',8-cyclase-MoaA
MTLTDLGVPMPRRVVSGAPDDGPLIDTYGRAATDLRVSLTDRCNLRCTYCMPAEGLAWLPTDELLSASELARLMSIAVTRLGITNVRFTGGEPLLSRHLDEVIAAAAALTPRPSIALTTNGVALAGRAAGLKAAGLDRVNVSLDTVDAARFASITRRNRLSDVVDGLAAASAAGLTPVKVNAVLDAVTGLDDAVELLRFCLAHGYQLRIIEQMPLDAEHQWNREEAITAADILGALRREFDLQPDPAPRGSAPAALWRVDGGTATVGVIASVSEAFCAACDRTRLTADGQVRSCLFSTDETDLRRLLRDGSGDDAIEAAWRTAMWGKPAGHGINDPGFVQPDRPMSAIGG
>NZ_AP022588.1|WP_163801320.1|6232035_6232440_+|YccF-domain-containing-protein
MRLILNVIWLIFGGLWLALGYFLAGIICFVLIITIPFGFAAFRIGMYALWPFGSTVVDKPGVRPGAVVGNVIWLVVAGIWLAIGHVLTAIAMAITIIGIPLAIANLKLIPVSLLPLGKEIVPADGPQDRFGVRR
>NZ_AP022588.1|WP_163802219.1|6231471_6231882_-|cold-shock-domain-containing-protein
MPTGKVKWYSAEKGFGFVSQEEGEDVYVGSSALPSGVAELKAGQKVEFGIAAGRRGPQALSLKVIEPPPSLAKTRREAERPEHKHTPDELHGMVEDMITLLEGAVQPELRKGRYPDRKIARRVSEVVKAVAQELDA
>NZ_AP022588.1|WP_163802218.1|6230550_6231429_+|hypothetical-protein
MRVLRWPFVGTEAVAAGLVTNHGLRTAYVAMHRNVYVPRDARPDAVDKAVAAWLWSRRDATVAGMSAAALHGARWIDADLPAELNRRGRDKVAGIVLHSDVLAEDEVCDLRGMPVTTPARTAFDIGRVSSLENAVVRLDALRNATGVSAAAVASLTDRHGGARGSVQLRRALELSDDGAESPQETRTRLLLVNAGLPRPETQIDVRDVRGRFVARLDMGWPDASVAVEFDGAQHWTDARQRSRDIDRIAELEALDWLVVRVSGELLRHRPAVILRRVRVALRERGVLVANTA
>NZ_AP022588.1|WP_163801319.1|6229427_6230432_-|glutathione-S-transferase-C-terminal-domain-containing-protein
MSYVNPKGEFDRDTDYITTRITRDGRDGYPVEPGRYRLVVARACPWANRAIIVRRLLGLEDAFSIGFCGPTHDERSWTFDLDPGGVDPVLKIPRLQDAYFRRDPDYPKGITVPAFVDVPTGAVVTNDFAQMTLDMSTEWTEFHRDGAPQLYPEEHRDEIDEVAKRIYTEVNNGVYRCGFAGSQGAYDKAYDRLFTALDWLSERLSDRRYLGGDTITEADVRLFTTLARFDPVYHGHFKCNRSKLAEMPVLWAYARDLFQTPGFGDTTDFEQIKHHYYEVHTDINPTGVVPKGPDLSNWLTSHGREALGGRPFGDGTPPGPTREGERVPEGHGAG
>NZ_AP022588.1|WP_163801318.1|6228932_6229424_+|DUF2771-family-protein
MRKVVAMLVAVAVLSTAATALLVWQLVRTGHVSPHPEISAYTRGQLVRVEPYRFCDVYDITKCDGTGVSAQLRVAPRDQIQLSLPEGIAKAPWVLLRSYEDGGPEQVEEFRPGSRVAVTIPPVDPQRGKLTGFAVMLPTLVRDEEGNEFPWPHAEWSVSTVWA
>NZ_AP022588.1|WP_174267019.1|6227367_6228936_+|MFS-transporter
MANYPSDDSLRRRRRHNPSAPSANRWLPPLDDEEGAPRSGSASGVGQQAGERVTVTRAAAQRSREMGSRMYGLFHRAATADGADKSGLTALTYPVMANFAADSAMAVALANTLFFAAASGESKGKVALYLLITIAPFAVIAPLIGPALDRLQHGRRVALAMSFGLRTVLAVVLIANYDGASGSFPSWVLYPCALGAMVLSKSFSVLRSAMTPRVLPPSIDLVRVNSRLTVFGLLGGTILGGAIAAGVEFSFNVFHLPGALYVMAVVTVAGAVLAMRIPKWVEVTEGEVPTTLTYHGPTQKPDRPTTKRARQPMGRNIITSLWGNSTIKVMVGFLFLYPAFVAKSHDASGWEQLRILGLIGAAAAIGNFTGNFASARLKLGHPAQLVVRATIAVTAVAVVTAVTGNLLVAAFATLVTSGASAVAKASLDASLQDDLPEESRASAFGRSESLLQLGWVAGGATGVLVYTDLWVGFTAISAVLILGLAQTLVSYGGDSLIPGFGGNRPVFAKKEGGMSKASAVPR
>NZ_AP022588.1|WP_163802216.1|6226378_6227173_-|DUF3027-domain-containing-protein
MIEPAEQDAAPTPEADAATASPELTAILVDAVDLARDAIVEGSDDDDAQVGEYLGASLDDPFAATHRFLAVMPGYQGWQWAVVVAAYPGAERATVSEVVLVPGPTALLAPAWVPWNERVQPGDLGPGDLLAPATNDPRLVPGFLSSGDEELDELAAEVGFGRKQVLGDLGRTDAAQRWYEGEYGPNSPMARSTRRVCRDCGFYLPLSGSLGRLFGVCGNEMSADGHVVALDYGCGAHSDTPEPARIGSPMFDPYDDGVIDRTES
>NZ_AP022588.1|WP_163801317.1|6225918_6226374_+|SRPBCC-family-protein
MADPLLQAEIDIAAPPEKVWELVSDLRLMPKWSPQCRLMKVFGPLRAGAKTVNVNRRGLMFWPTTSQITEFIPGEKLAFRVNENNTVWSYELEPTATGTRLVESRHAENGVKPISTVLVNAVMGGVPSFERELVQGMNDSLARIKAAAEGR
>NZ_AP022588.1|WP_163801323.1|6235542_6235968_-|molybdenum-cofactor-biosynthesis-protein-MoaE
MTSVVRVALTDDPIDLTEHEALVAHEAAGAVVGFSGVVRDHDGGRGVIRLEYSGHPTALDVLVEVAEEVARAAEGVRAIAVSHRVGTLHIGDAALVAAVSADHRRAAFETCALLVDTVKARLPVWKHQFFADGTEEWVGSA
>NZ_AP022588.1|WP_163801324.1|6235993_6236485_-|MogA/MoaB-family-molybdenum-cofactor-biosynthesis-protein
MTAARPRTARVVIASTRAATGVYEDRTGPVIVEWLRDRGFDVPAPIVVADGMAVSRALIEAIGEKVDLVLTSGGTGISPTDGTADATAAIVDYQIPGLADAIRRSGLPHVPTSVLSRGVCGVRDGILVVNLPGSTGGVKDGLGVLDEVLDHALDQLAGGDHSR
>NZ_AP022588.1|WP_174267020.1|6236481_6236907_-|cyclic-pyranopterin-monophosphate-synthase-MoaC
MVDVTAKDATRRTAVARGTLRTRTDVVDLIASKGLPKGDALATARVAGILAAKRTSDLIPLCHQLALTGVDVDFDIGTDSVDVTATVRTTDRTGVEMEALTAVSVAALTLYDMLKAVDPAATIEGIAVVRKDGGKTGSWTR
>NZ_AP022588.1|WP_174266902.1|6236954_6237158_-|hypothetical-protein
MACHNGHVAEKKKQYVDNGWPQTEDGDHAVSELASDRTGALSPFGDVSFPLPADALPYTHPVTVVNK
>NZ_AP022588.1|WP_163801326.1|6245301_6245613_-|hypothetical-protein
MPSSSDTQRPFSASTIWPSVQETLCDAAEPLPPHGWTPAQSSAEPIAGVTTVEKARGAMTSAEPDRSVNRIRFVRAVMRIPRNIVARSESVHDECRQSFASRA
>NZ_AP022588.1|WP_163801327.1|6245747_6245939_+|hypothetical-protein
MVPNLQLTPDLGVGTLLGGAAALSQLPGRAPAAACDQPAEPARTAPPPAINPLNPLGLPRHPI
>NZ_AP022588.1|WP_163802221.1|6245985_6246597_+|DUF2505-family-protein
MSAESPYGIDRIRAAFDDADYWQARLAFVAGGARLDELSTAGDGTTTMQMSMRFGGDDLPGPLRRLRVGTLHVVQREEWSALDGDVVRCSIAVDAPRTPISGHGSVTLRRAVTGTRLVGTAVVDVRMPVIGGAIAGFIAGVLANGIVDVVSVTDAYLDGEKPVRSPAVASLTSWHSTRTIARPSWPNPSTSVRCRCRAPTVDR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3316429 : 3324068

Bacillus_phage(14.29%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_163797923.1\|3316429_3317287_+	SDR family oxidoreductase	W8CYX9	Bacillus_phage	1.4e-05	34.6
WP_163797924.1\|3317290_3318451_-	AAA family ATPase	A0A077SLJ9	Escherichia_phage	1.2e-55	37.4
WP_163801845.1\|3318460_3319510_-	DNA polymerase IV	A0A2H4JBL5	uncultured_Caudovirales_phage	1.4e-10	30.7
WP_163797925.1\|3319514_3320132_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_163801846.1\|3320220_3320763_+	NAD(P)H-dependent oxidoreductase	A0A2P0ZL77	Lactobacillus_phage	3.9e-09	33.9
WP_163797926.1\|3321213_3321456_+	glutaredoxin-like protein NrdH	V5UN81	Mycobacterium_phage	2.9e-20	63.6
WP_163797927.1\|3321492_3321936_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	G3MBF1	Bacillus_virus	3.8e-10	31.9
WP_174266963.1\|3321950_3324068_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	2.1e-207	51.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_AP022588

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection