CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_AP022591	Mycolicibacterium celeriflavum strain JCM 18439	3 crisprs	csa3,DEDDh,cas4,WYL,c2c9_V-U4,cas3,DinG	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_AP022591_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022591_1

1572137-1572237

Orphan

Consensus_repeat	Method
TACCGGCGTAACACTGAGTGTTACGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP022591_1

>merge|NZ_AP022591|1|1572137-1572237|CRISPRCasFinder
CATAGCCGTAACACTGAGTATTACCGGCGTAACACTGAGTGTTACGGAATACGGCAAAGTCGCAGGTCGCCGCCTACCGGGCGTAACACTGAGTGTTACGG

>NZ_AP022591|1|1|1572137-1572237|CRISPRCasFinder
CATAGCCGTAACACTGAGTATTACCG	GCGTAACACTGAGTGTTACGGAATACGGCAAAGTCGCAGGTCGCCGCCT
ACCGGGCGTAACACTGAGTGTTACGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022591.1\|WP_082999824.1\|1573230_1574091_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022591.1\|WP_082999825.1\|1572791_1572989_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022591.1\|WP_082999828.1\|1567020_1567356_-\|HK97-gp10-family-phage-protein	unknown	unknown	gnl\|CDD\|377415
NZ_AP022591.1\|WP_163689825.1\|1571334_1571508_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022591.1\|WP_082999829.1\|1565333_1566818_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226974
NZ_AP022591.1\|WP_082999822.1\|1574862_1576257_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|214861
NZ_AP022591.1\|WP_163689830.1\|1574406_1574574_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022591.1\|WP_082999821.1\|1576267_1577701_-\|YifB-family-Mg-chelatase-like-AAA-ATPase	unknown	unknown	gnl\|CDD\|223679
NZ_AP022591.1\|WP_067225049.1\|1577701_1578070_-\|YraN-family-protein	unknown	unknown	gnl\|CDD\|237119
NZ_AP022591.1\|WP_133052431.1\|1572571_1572763_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022591.1\|WP_082999819.1\|1579128_1580145_+\|iron-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270261
NZ_AP022591.1\|WP_133052433.1\|1560931_1561456_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022591.1\|WP_082999827.1\|1567636_1570999_-\|phage-tail-tape-measure-protein	unknown	unknown	gnl\|CDD\|227605
NZ_AP022591.1\|WP_133052430.1\|1574071_1574389_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240515
NZ_AP022591.1\|WP_082999833.1\|1561615_1562242_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022591.1\|WP_133052432.1\|1564154_1565333_-\|phage-portal-protein	unknown	unknown	gnl\|CDD\|377413
NZ_AP022591.1\|WP_082999820.1\|1578207_1579026_+\|DUF1206-domain-containing-protein	unknown	unknown	gnl\|CDD\|377695
NZ_AP022591.1\|WP_082999831.1\|1563601_1564162_-\|HK97-family-phage-prohead-protease	unknown	unknown	gnl\|CDD\|309640
NZ_AP022591.1\|WP_163689828.1\|1571504_1571666_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022591.1\|WP_082999832.1\|1562407_1563601_-\|phage-major-capsid-protein	unknown	unknown	gnl\|CDD\|273690

Protein	Function_ID	Function_description	E-value
NZ_AP022591.1\|WP_082999828.1\|1567020_1567356_-\|HK97-gp10-family-phage-protein	gnl\|CDD\|377415	pfam04883, HK97-gp10_like, Bacteriophage HK97-gp10, putative tail-component. This family of proteins is found in the caudovirales. It may be a tail component.	1.10522e-05
NZ_AP022591.1\|WP_082999829.1\|1565333_1566818_-\|hypothetical-protein	gnl\|CDD\|226974	COG4626, COG4626, Phage terminase-like protein, large subunit [General function prediction only].	1.62453e-30
NZ_AP022591.1\|WP_082999822.1\|1574862_1576257_-\|recombinase-family-protein	gnl\|CDD\|214861	smart00857, Resolvase, Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.	2.26325e-38
NZ_AP022591.1\|WP_082999821.1\|1576267_1577701_-\|YifB-family-Mg-chelatase-like-AAA-ATPase	gnl\|CDD\|223679	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones].	0
NZ_AP022591.1\|WP_082999819.1\|1579128_1580145_+\|iron-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270261	cd13543, PBP2_Fbp, Substrate binding domain of ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily. The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria from the Pasteurellaceae and Neisseriaceae families and is critical for survival of these pathogens within the host. This periplasmic protein (Fbp) has high affinities for ferric iron and serves as the primary receptor for transport. After binding iron with high affinity, Fbp interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ferric iron-binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.263e-140
NZ_AP022591.1\|WP_082999827.1\|1567636_1570999_-\|phage-tail-tape-measure-protein	gnl\|CDD\|227605	COG5280, COG5280, Phage-related minor tail protein [Function unknown].	1.84532e-18
NZ_AP022591.1\|WP_133052430.1\|1574071_1574389_-\|hypothetical-protein	gnl\|CDD\|240515	cd06091, KOW_NusG, NusG contains an NGN domain at its N-terminus and KOW motif at its C-terminus. KOW_NusG motif is one of the two domains of N-Utilization Substance G (NusG) a transcription elongation and Rho-termination factor in bacteria and archaea. KOW domain is known as an RNA-binding motif that is shared so far among some families of ribosomal proteins, the essential bacterial transcriptional elongation factor NusG, the eukaryotic chromatin elongation factor Spt5, the higher eukaryotic KIN17 proteins and Mtr4. The eukaryotic ortholog of NusG is Spt5 with multiple KOW motifs at its C-terminus.	0.00329251
NZ_AP022591.1\|WP_133052432.1\|1564154_1565333_-\|phage-portal-protein	gnl\|CDD\|377413	pfam04860, Phage_portal, Phage portal protein. Bacteriophage portal proteins form a dodecamer and is located at a five-fold vertex of the viral capsid. The portal complex forms a channel through which the viral DNA is packaged into the capsid, and exits during infection. The portal protein is though to rotate during DNA packaging. Portal proteins from different phage show little sequence homology, so this family does not represent all portal proteins.	3.61506e-70
NZ_AP022591.1\|WP_082999832.1\|1562407_1563601_-\|phage-major-capsid-protein	gnl\|CDD\|273690	TIGR01554, prophage_Lp3_protein_18, phage major capsid protein, HK97 family. This model family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease. [Mobile and extrachromosomal element functions, Prophage functions].	1.37261e-67
NZ_AP022591.1\|WP_082999820.1\|1578207_1579026_+\|DUF1206-domain-containing-protein	gnl\|CDD\|377695	pfam06724, DUF1206, Domain of Unknown Function (DUF1206). This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins.	4.97811e-11
NZ_AP022591.1\|WP_082999831.1\|1563601_1564162_-\|HK97-family-phage-prohead-protease	gnl\|CDD\|309640	pfam04586, Peptidase_S78, Caudovirus prohead serine protease. Family of Caudovirus prohead serine proteases also found in a number of bacteria possibly as the result of horizontal transfer.	3.22078e-40
NZ_AP022591.1\|WP_067225049.1\|1577701_1578070_-\|YraN-family-protein	gnl\|CDD\|237119	PRK12497, PRK12497, YraN family protein.	9.84797e-45

>NZ_AP022591.1|WP_163689828.1|1571504_1571666_-|hypothetical-protein
MTAYCRPFTVTEHDGGWLVTVGYRQFRLNKAEAEELARIVSGRPYIMRYPADQ
>NZ_AP022591.1|WP_163689825.1|1571334_1571508_-|hypothetical-protein
MTTIAAAVGEPYTIGLTRTGLIRLSRKVRGTEHFIIFDRTAALTVCDAIVDFVEQQD
>NZ_AP022591.1|WP_082999827.1|1567636_1570999_-|phage-tail-tape-measure-protein
MAEISIDVKAALDRRAAALAARQLSNEFQDAGQTAGQQFRRQLEQPLRNIDASDPARRAARDFADAGTDAGRRFSSNAAAGLRNGDFDRAGREAARDFQRSFERIAKPTVDIDARSSAASAGDDAADSFLGGFAGAGAMSKLAGKGGPIAMAIIGGVTAAIKVVGPQMQAAMSKELAVDLTQARLGINAESMANVATAAGKAWSQNFGASVEENLGTATAAIQSGLVLPNADVGTLQKTIEQLTSVSTILGEDIPAVARSASQMIKTGMATDVTNAFDLITAGQQRGLNVSQDFLDTINEYSTEFRSLGLTGAEAFGLMTQAIQGGARDTDIAADALKEFSIRAVDGSKTTTDAFTALGLNADDMARRFGEGGRASAEAFDLVVDKIRAIQDPVEQSRVAVQLFGTQAEDLKGAMSRFDLSTAVNAFGQVEGASKRAADTAVSNSLNEWQTAGRNIQSVIASIRDSLNMDQWFEDIPRAINDIFDSVPKRTRGAPGVPGVPSTSEDGGPAIQPSTPVAPSQQRNPLDVFAPVPRAEGGIFGTLPTSAVIQPATEGLVQWAEPSTGGEAFIPLNGGQRSLAIWAETGRRLGVRGFDQGGITGPYSPYGPATALESLARSSSGGQYDWGASDLVKGLSDCSGAVSDLVELLIKGETDPSRLFTTHTAGQVLQSLGATRGYVPGNLNIGINPQHMAATLPSGVNFESGGGTGQGATYGGAAVGALDPQFSEHWSLPVPGGLTDGAVPVYLQGVDHAAFADSATGAATSAQPVQQQIGAPIDSDFGFSQGMPGVFSNIFKVLANTAMAPAIGALTGATNVFGTAGPGSGLLGMLSPRQSMFGTLPSITGYLPGGTTPTAPYSSGAPTTPPSSYTPGFGATPMGIPGASPMGAPFGTPASGMGLGPAPGPVPGTPGMAPATQPFGPTGPTGTASTPVMGRAYAEGKPAQEGFGLSGGGLIGLAQSLPGAAMSAAGGMFPGGGAAGAVAGQGAQIAIDEINRAVQAGAELTAIGVEALAETFLPVESQLADPARGWAGRILGGIAGVKPVAPNLAGSLTDALQGNGDKPLSAEQVAAKEAQQAHQGNGQPPGPPQVNVNIDNSKVPDLASDVSHHTQAMNAQPGAR
>NZ_AP022591.1|WP_082999828.1|1567020_1567356_-|HK97-gp10-family-phage-protein
MKVSIDPREIEKAIAEEAKSSSAVRSELDEFVEEVAETVRSLAPVDTGKFRNSIKARKSGRLNGIDKGSGVQVGEVYSDDPAAPFIEHGTGDTPAHAPFLRTAFRYGGTGE
>NZ_AP022591.1|WP_082999829.1|1565333_1566818_-|hypothetical-protein
MNGNARSRFEDLSEPPWYRWREKDTAQRAIRFIQTYCRSPKGHGHGKPLKLARFQKDWIAEILSPVVRQAVLQCPRGQGKSTLLAALAVWATFDRYEDGAPQVPVMATTVGQAKRSVYDVAVAMINAEPELANRSIRYTAIGDSRFVVGYSGGVCFPVANDPDGLQGLDPGPVAVVDEIGFQPVESWSSMVLASGKRSRSVIVAIGTPGLDRENALWHLRSAWLDGRRPPGFSFTEYSAPDEMDPYDEKTWRHACPALDAGYQSIDALRVAIETSPLSHFEIFHLGRWVDGVDSWLGPDGRTIWGALKSDYQPKPKAPTWVGIDVGIKRDTTAVVYGQHRPDGKFHTTARIWTPTKAETIDLSSVMQFLRELDSQYDLQECAYDPRLFEIPGQMLADEGMPMVEFPQSLERMSPAYVALYEAIVTGTVSHDGDELYTRQVLNAIPRYNERGFLLAKNKSRGKIDAAAALAMCFDRASHPAPKRHPLVALIAGVR
>NZ_AP022591.1|WP_133052432.1|1564154_1565333_-|phage-portal-protein
MSFLSRLFRIPEPYEPPETRDWSIADPFAAHLFGGGPALSGVSVTEQSAMGLSAVYRCVQLLSGTIATLPLRTVHTDADGTTRRVSSWLDNPAGPDGPTAHEFIEGLMVALLLRGNFHALKVFNGAGVLHSLQPLPSQCVGIDIKNGRKVYRVQLENGTSKELTDREILHIPGLSLDGVRGVSPISIARQSLGTAIAGERSAGRLFHNGALMSAIVTPTEDLTSDEAEVVRDTLDRVVGGERNAGSMAVFSKALNVSQWSVDPVNAQFLESRKFSTSEVARWFGVPPHLIGDVERSTSWGSGITEQTLAFQKFTLQQWTSRIEARLSRLFDGSRKVEFDFRQLFAGTPDQEIELLMKQTGNQPILTVDEARQILNRPAMPQVSQELPEGDDA
>NZ_AP022591.1|WP_082999831.1|1563601_1564162_-|HK97-family-phage-prohead-protease
MLSHFNVELRSEITGDKLTGRAAVFSQYADFGSYLETLATTAFDATLADPATDVRSFYQHDSARLLGRQSSGTLRLSTDSTGLHFELDIPDTSDGRDLRELVKRGDLTGMSFGFIAGQEDWGHTPDGRELRTHTSVARLIEVSPVSQPAYAGTSVQLRSLSDIPARPNGQTQIIRAKARAHRKVTH
>NZ_AP022591.1|WP_082999832.1|1562407_1563601_-|phage-major-capsid-protein
MSIEEILAKLQEIADAGETRSLTDDEVQSYEELEGQLKAAQKTQELRARQSAYMAPNASVAAAVNVATVKQDDTLDRAFESYLRTGRANQDIQELRAQQVGTDSEGGYLVSPGFRQKLVEVQKAFGGLANEVDTFTTEKGGAIEYPTLDDTANSGSITAEEAAFADGADLTFGTVNLGAFKYTSSGAGTTTPLRVSVELLQDAEFDIQGLVARKLGERIMRKQASDWAIGTGTTLPFGICHAGLTHDHELATTTTITYADLLDLEAKLDPAYEQNAKWVFNKATWTAVRKLVDDNGRPLIFDQAASGAGQAPQKTLLGYPVVLDQSFPSPAGDSANFTVLGDLREAYVIRRVAPLTVVVNPYTRMNNGQVEYVAWERADGNIQNRKAYVVLATEDVA
>NZ_AP022591.1|WP_082999833.1|1561615_1562242_-|hypothetical-protein
MAWAPQYVTADELAAWHSESIDPVENEAELTLAVEAASRAIDKATGRCFGQVASNETRWYTPEFYRDRWLIDIDDLMSDDALVIEVDRDGTPEAAITAYKLTPINAAAIGRPWTRIEVLPSSAVKPNGLRNGVRVSARWGWSAIPSAIRYATLVQAARFYDRRNGIGGTLTSKQVDDVSMAWAASAIQDLDPDVLTTIAGYRRLWAAV
>NZ_AP022591.1|WP_133052433.1|1560931_1561456_-|hypothetical-protein
MAIPPTGGRYATLPVGRHQATFEQVYEAFVENAPFRDDREVIFEALTLYAKIVANLCPGLALWVNGGFITHKSWAAPKDADVVVVVPQAHYPNVCSNPSVWTYITLQGVIVSDPSTGGGRIGRIQPMAGLIDGFIISDDPTLSDVWAYRWSLVNDEDGNLLPDTTRKGFLEVKL
>NZ_AP022591.1|WP_133052431.1|1572571_1572763_-|hypothetical-protein
MARNPIRLSRRRCGGMQIAQGRSFILLDRDEAIGLIADAQKIIDSQDDGPERADTVSKVEIHT
>NZ_AP022591.1|WP_082999825.1|1572791_1572989_-|hypothetical-protein
MIYKIPGADFTVRLSDQGGRAIILEICSIEGDKFIVPINPDTADDLGREILAGAMALNGGLAAKV
>NZ_AP022591.1|WP_082999824.1|1573230_1574091_-|hypothetical-protein
MTGISTDADLVAAARSAYRHFHHDDGACKDPKRWAEFTAEHPELAEVVQRPKPNRGIGSGSDMTAGRCWRQSDKQRQYRKPTSALSMLAVADEGLTNNVDEILAASRGDSSTEYARDSDGADPSAELPDEGEDFTADEPGGFHFVSEYEHRSEQTSSRLLEVCVRCGWPLALAWEPACEFPESPMFWFQYFEACHCNGCLSGIKRRPGTQPRYCADGCKRDAANARRRRRRGRAEELPLPDMPVRKCAHCTCLRYAECGRSCLMKCDCGENHTDYSPEDGCLWCRK
>NZ_AP022591.1|WP_133052430.1|1574071_1574389_-|hypothetical-protein
MKVGDRVRIERDENRYLSKGTWLQFRGQTGTVVEINEDRKRPHLTEYGVAFGRVRRRPDGSLHGDDVTTWFKPYELVVTVALAPQRHADGTDAPGWGWCGDGHQH
>NZ_AP022591.1|WP_163689830.1|1574406_1574574_-|hypothetical-protein
MEVLTEESYEFADQVAEVVAAAPPMTPDQRDRIASILNAARAADGTDSSGWGLVG
>NZ_AP022591.1|WP_082999822.1|1574862_1576257_-|recombinase-family-protein
MRVAVYLRQSQDRQGDQLGIDRQRQDCQRLITARGWSIAAEFVDNDVSATSRKPRPQFDAMMRRVDEGDFDVIVARHMDRLLRRVSELESVLERCERHKTYIVTAADSVDTSTDAGRLVARILSSVAQGEVERKGARQRSAVQQAAEQGRWVGGRRAFGYEPDGVTVRENEAALIRQGYAAVLAGDSLAEIARCWDAAGFITTQGGPWQRQAVKDVLTNPRNAGMRRHRPQEDRRAIRQNPELGITGRAKWPAIVDETTWRAAVRILCDPSRRRPNGAKRLLTGVAVCGVCEAPVHGGAAARPGTATYRCTSGRHVSRMADPVDEYVTEVTLDRLTQPDAAQLWTPELADAKALMAEADTLRRRRSDIDQDYADGILSPARFRAMNGRVASRLADVEAQIATAGQSSPLAIVAAENVRATWATLSNAQRRGIIASLMTPVLHLPGRGTRTFRPETVEIRWRVPV
>NZ_AP022591.1|WP_082999821.1|1576267_1577701_-|YifB-family-Mg-chelatase-like-AAA-ATPase
MALGRAFSVAVSALDGRIVEIEADISSGLPGVYLVGLPDAALQESRNRVRAAITNCGDDWPQSRLTLALSPATLPKVGSVYDLALALSVLSAQAKKRWARLEKTVLLGELALDGRVRPVKGILPAVLAAKREGWPTVVVPAENLAEASLVDDIEVWGARTLGQLKSWIKGKGQLESRIASPSSQPEPTADLADVVGQTEARYAVEVAAAGGHHLMLTGPPGVGKTMLAQRLPGLLPPLSESEALEVTAIHSVAGLLSEDTPLITRPPFVAPHHTSSVAAMVGGGTGMARPGAVSRAHRGVLFLDECAEIGCSVLEALRTPLEDGEIRLARRDGVARYPARFQLVLAANPCPCARPDPRDCVCSGHEKRRYLGKLSGPLLDRVDLNVRMNSLRAGAIVAKDGESTEVVRERVATARAAAAERWRSYGIGTNVEVSGSLLRRNFRLPPTVMKPFEAALNRGTLSVRGMDRTLRVAWTTC
>NZ_AP022591.1|WP_067225049.1|1577701_1578070_-|YraN-family-protein
MTSLTRAEIGALGEQLAVDHLRSLGLRVLGRNWRCRYGELDVIAVDDTARIVVFVEVKTRTSDQFGGVAQAVTPQKVRRLRRLAGLWLAAQDTGWSQVRIDVVGVRIGRRRTPEITHLQGVG
>NZ_AP022591.1|WP_082999820.1|1578207_1579026_+|DUF1206-domain-containing-protein
MTDKSLHGVADRATDSDAFEYTARAGFAISGVLHLLIGYLILRIALGSGGNADQSGALATLAQQTGGAVLLWVVTAGLLALGLWRIAEAVVGARPGEGSGPHNDDTPAWKRAKSLGLAAVNVAIAISAARFATGSGQQSSQQNAGLSAQIMQSGWGKAVLVAVGLGLIAVGGYHVYKGATKKFRKDLRVSGGTGVTAVGVTGYVAKGLVLAGAGLLVIVATLQADPAKAGGLDAAVKTLGQAPFGRILLVLAAVGIAAFGAYNFVRARHGRM
>NZ_AP022591.1|WP_082999819.1|1579128_1580145_+|iron-ABC-transporter-substrate-binding-protein
MRLQWRRIAAVLSALAVAAAATSCSDSGDTDELLVYNAQHESLTNEWIDAFTEETGIKVTYRQGGDTELGNQLVAEGEASPADVFLTENSPAMAAVERAGLFADLESETLEQVPPQYRPPTGKWTGVAARSTVFVYNTDRLQPDRLPKSLLDLQQPEWKDRWGAPPSKADFQAIVSALLELKGEAATAQWLAAMKTNAKLYNDNIATLKAVNAGQVDGGVIYHYYWFRDQSKTKEMSGNTALHYFKNEDPGAFVSLSGGGVLASSDKMDQAQRFIRFITGKAGQEVLEKGTSFEYPVGSGVPANPALPPLDTLQAPNVDPSKLDAQKVTDLMTKAGLL

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Crispr_ID: NZ_AP022591_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022591_2

2050691-2050791

Orphan

Consensus_repeat	Method
TGAAGATCACGGCCACCGCCGAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP022591_2

>merge|NZ_AP022591|2|2050691-2050791|CRISPRCasFinder
TGAAGATCACGGCCACCGCCGAGCAGTCGAAATGATGTGGTCCACCCTAGCCGTGGAAATCGCCACCGCCGAGCGGTGAAGGATCACGGCCACCGCCGAGC

>NZ_AP022591|2|2|2050691-2050791|CRISPRCasFinder
TGAAGATCACGGCCACCGCCGAGC	AGTCGAAATGATGTGGTCCACCCTAGCCGTGGAAATCGCCACCGCCGAGCGGT
GAAGGATCACGGCCACCGCCGAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022591.1\|WP_067219117.1\|2058296_2058476_-\|rubredoxin	unknown	unknown	gnl\|CDD\|224687
NZ_AP022591.1\|WP_083004991.1\|2040313_2040943_-\|ComF-family-protein	unknown	unknown	gnl\|CDD\|223970
NZ_AP022591.1\|WP_083004892.1\|2044423_2047246_+\|RND-family-transporter	unknown	unknown	gnl\|CDD\|129913
NZ_AP022591.1\|WP_067219105.1\|2052324_2053011_+\|DUF899-domain-containing-protein	unknown	unknown	gnl\|CDD\|377584
NZ_AP022591.1\|WP_083004898.1\|2039359_2040025_-\|ribosome-associated-translation-inhibitor-RaiA	unknown	unknown	gnl\|CDD\|129824
NZ_AP022591.1\|WP_083004885.1\|2053101_2053584_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227140
NZ_AP022591.1\|WP_083004973.1\|2056048_2057524_-\|adenosylhomocysteinase	unknown	unknown	gnl\|CDD\|377487
NZ_AP022591.1\|WP_067219120.1\|2058511_2058673_-\|rubredoxin	unknown	unknown	gnl\|CDD\|366011
NZ_AP022591.1\|WP_083004985.1\|2042299_2042962_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_AP022591.1\|WP_165757350.1\|2057640_2058357_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|375982
NZ_AP022591.1\|WP_083004904.1\|2034247_2035657_-\|wax-ester/triacylglycerol-synthase-family-O-acyltransferase	unknown	unknown	gnl\|CDD\|274360
NZ_AP022591.1\|WP_083004888.1\|2047299_2049057_-\|MtrAB-system-accessory-protein-LpqB	unknown	unknown	gnl\|CDD\|237449
NZ_AP022591.1\|WP_109749525.1\|2035885_2036380_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022591.1\|WP_083004881.1\|2053712_2054618_+\|DUF1028-domain-containing-protein	unknown	unknown	gnl\|CDD\|377639
NZ_AP022591.1\|WP_059099010.1\|2050826_2051513_-\|two-component-system-response-regulator-MtrA	unknown	unknown	gnl\|CDD\|223816
NZ_AP022591.1\|WP_083004982.1\|2042958_2044167_-\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NZ_AP022591.1\|WP_083004975.1\|2051603_2052236_-\|dTMP-kinase	unknown	unknown	gnl\|CDD\|236133
NZ_AP022591.1\|WP_083004901.1\|2036411_2039243_-\|preprotein-translocase-subunit-SecA	unknown	unknown	gnl\|CDD\|237259
NZ_AP022591.1\|WP_109749524.1\|2054638_2055931_-\|triacylglycerol-lipase	unknown	unknown	gnl\|CDD\|367570
NZ_AP022591.1\|WP_083004895.1\|2040995_2042303_+\|DUF2252-domain-containing-protein	unknown	unknown	gnl\|CDD\|313268

Protein	Function_ID	Function_description	E-value
NZ_AP022591.1\|WP_083004991.1\|2040313_2040943_-\|ComF-family-protein	gnl\|CDD\|223970	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only].	9.80996e-36
NZ_AP022591.1\|WP_083004892.1\|2044423_2047246_+\|RND-family-transporter	gnl\|CDD\|129913	TIGR00833, Putative_membrane_protein_ActII-3, Transport protein. The Resistance-Nodulation-Cell Division (RND) Superfamily- MmpL sub family (TC 2.A.6.5)Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate. [Transport and binding proteins, Unknown substrate].	0
NZ_AP022591.1\|WP_067219105.1\|2052324_2053011_+\|DUF899-domain-containing-protein	gnl\|CDD\|377584	pfam05988, DUF899, Bacterial protein of unknown function (DUF899). This family consists of several uncharacterized bacterial proteins of unknown function.	6.05157e-104
NZ_AP022591.1\|WP_083004898.1\|2039359_2040025_-\|ribosome-associated-translation-inhibitor-RaiA	gnl\|CDD\|129824	TIGR00741, Probable_sigma54_modulation_protein_ORF3_ORF95., ribosomal subunit interface protein. This model includes a small protein encoded by one of two genes, both downstream of the gene rpoN for sigma 54, whose deletion leads to increased expression from sigma 54-dependent promoters. It also includes the N-terminal half of a light-repressed protein LtrA of Synechococcus PCC 7002 and the N-terminal region (after removal of the transit peptide) of a larger plastid-specific ribosomal protein of spinach. The member of this family from E. coli is now recognized as a protein at the interace between ribosomal large and small subunits, with about 1/3 as many copies per cell as the number of ribosomes. [Protein synthesis, Translation factors].	6.28501e-32
NZ_AP022591.1\|WP_083004885.1\|2053101_2053584_-\|hypothetical-protein	gnl\|CDD\|227140	COG4803, COG4803, Predicted membrane protein [Function unknown].	0.00223669
NZ_AP022591.1\|WP_083004973.1\|2056048_2057524_-\|adenosylhomocysteinase	gnl\|CDD\|377487	pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hydrolase.	0
NZ_AP022591.1\|WP_067219120.1\|2058511_2058673_-\|rubredoxin	gnl\|CDD\|366011	pfam00301, Rubredoxin, Rubredoxin.	2.93534e-17
NZ_AP022591.1\|WP_083004985.1\|2042299_2042962_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.30909e-65
NZ_AP022591.1\|WP_165757350.1\|2057640_2058357_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|375982	pfam18556, TetR_C_35, Bacterial Tetracyclin repressor, C-terminal domain. This is the C-terminal tetracyclin repressor domain found in bacteria. Family members include TetR family transcriptional regulators Rv3249c and Rv1816 found in Mycobacterium tuberculosis. Palmitic acid (a fatty acid) and isopropyl laurate (a fatty acid ester), were identified as binding ligands to Rv3249c and Rv1816 respectively. Similar to other TetR family regulators, these proteins are alpha-helical dimeric proteins consisting of a smaller N-terminal DNA-binding domain and a larger C-terminal regulatory domain.	1.11604e-43
NZ_AP022591.1\|WP_083004904.1\|2034247_2035657_-\|wax-ester/triacylglycerol-synthase-family-O-acyltransferase	gnl\|CDD\|274360	TIGR02946, Putative_diacyglycerol_O-acyltransferase_Mb3115, acyltransferase, WS/DGAT/MGAT. This bacteria-specific protein family includes a characterized, homodimeric, broad specificity acyltransferase from Acinetobacter sp. strain ADP1, active as wax ester synthase, as acyl coenzyme A:diacylglycerol acyltransferase, and as acyl-CoA:monoacylglycerol acyltransferase. [Unknown function, Enzymes of unknown specificity].	5.22433e-159
NZ_AP022591.1\|WP_083004888.1\|2047299_2049057_-\|MtrAB-system-accessory-protein-LpqB	gnl\|CDD\|237449	PRK13616, PRK13616, MtrAB system accessory protein LpqB.	0
NZ_AP022591.1\|WP_109749524.1\|2054638_2055931_-\|triacylglycerol-lipase	gnl\|CDD\|367570	pfam03583, LIP, Secretory lipase. These lipases are expressed and secreted during the infection cycle of these pathogens. In particular, C. albicans has a large number of different lipases, possibly reflecting broad lipolytic activity, which may contribute to the persistence and virulence of C. albicans in human tissue.	4.55082e-50
NZ_AP022591.1\|WP_083004881.1\|2053712_2054618_+\|DUF1028-domain-containing-protein	gnl\|CDD\|377639	pfam06267, DUF1028, Family of unknown function (DUF1028). Family of bacterial and archaeal proteins with unknown function. Some members are associated with a C-terminal peptidoglycan binding domain. So perhaps this could be an enzyme involved in peptidoglycan metabolism.	1.31819e-72
NZ_AP022591.1\|WP_059099010.1\|2050826_2051513_-\|two-component-system-response-regulator-MtrA	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.71365e-86
NZ_AP022591.1\|WP_083004982.1\|2042958_2044167_-\|two-component-sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	5.89465e-30
NZ_AP022591.1\|WP_083004975.1\|2051603_2052236_-\|dTMP-kinase	gnl\|CDD\|236133	PRK07933, PRK07933, dTMP kinase.	5.35174e-104
NZ_AP022591.1\|WP_083004901.1\|2036411_2039243_-\|preprotein-translocase-subunit-SecA	gnl\|CDD\|237259	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.	0
NZ_AP022591.1\|WP_067219117.1\|2058296_2058476_-\|rubredoxin	gnl\|CDD\|224687	COG1773, COG1773, Rubredoxin [Energy production and conversion].	2.42964e-20
NZ_AP022591.1\|WP_083004895.1\|2040995_2042303_+\|DUF2252-domain-containing-protein	gnl\|CDD\|313268	pfam10009, DUF2252, Uncharacterized protein conserved in bacteria (DUF2252). This domain, found in various hypothetical bacterial proteins, has no known function.	3.1657e-120

>NZ_AP022591.1|WP_083004888.1|2047299_2049057_-|MtrAB-system-accessory-protein-LpqB
MRRLLAVVWLLAVVLAGCAGVPSSSSPQAIGTVDRPAPPSLPKPTPGMDPDVLLREFLKATADPSNRHLAARQFLTESASRTWDDAGSAILIDNVVFVETRGPERVSVNMRADILGSLSDMGVFETGEGALPDPGPIELVKTPDGWRIDKLPNGVFLDWQQFQATYKRNTLYFVDPTGGTVVPDPRYVAVSDPDQLATELVSKLIAGPRPEMAKTVRNLLEPPLKLRGPVTRADGGKTGVGRGYGGARIDLENLSTTDPHSRQLLAAQLIWTLSRAGINGPYVINADSVPLDERFADGWETSDVAATDPGAASGVAAGLHALVGGSLVALDGQRAPRVPGPFGQMPNQTSAAVSRTGQEVASIVTLRPGAPDMASSMWVGALGGNASQVLEARELSRPSWSLDNAVWVVIDGNNVVRVIQDASGQPARIPVDSTLVSTKFPGPITELQLSRDGTRAAMVIDGRVILAGVEQTPGGGYALTYPRRLGFGLRDTVVSLSWRTGDDIVVSRTDPQHPVSYVNLDGVNSDGPSRNLLMPVTTVAANPSTVYVADARGIMQLSGSVAEEDPAWAEVRPLMVAGAEPVLPG
>NZ_AP022591.1|WP_083004892.1|2044423_2047246_+|RND-family-transporter
MAERLAHLTSRYAVWVVVVWVVAAGAANLAVPQLERVVESHSRSFMPAQAPSSVAAMQGATLLGEKPSNNLNYVVLEGDQPLGDDDKEFYHRLVTNLRADDEHVYAVTDLWSDPATAAGAQSEDGHAVTVMTRLSGMLGTSRAADAVDALRDIVMRLDPPDGLGVYVTGPGATIADEFRAIDRQMLGITAATVALILLLLLIVYRSPVGAAIPLISVGLALAVARPIVAALGDAGLAEVSLFSVALLAAMMLGAGTDYAIFLIGRYHEGRRRGDPSAASLLHACRGVAPVIVGSALTIAAALTSLSFAEIGMFRSTGIPCAVGVLVAMLASMSLTPALIALAGRRGRLEPRPSTGARRWRRIGVHVARWPAPILTASAVLIVVSAIPVAGLRIGWNEPAATPADTESNQGYAAADRHFGANHLLATVVNVAAPHDIRNPAGLIAVERITRQIMEIPGVRMVQSASRPAGTVPDEATLSWQAGIIGEQFAATIDGFTERLGGIAALDNALGSMTTAVDQLSQGLQGSAAGLSQMGSAAADMRAGMAGLETNVTAVSGYLDPLRGFVSSTPNCPANPICSVVARVVQPADDVIRSSAQLSSGATKLTDGSTDATEALAALPPAVDTMSAQLRQARAATADLASLTTSLGPQLHQVTDYLQEIATAFRDSAAGGFYMPQRALADPSLRAALDRLMSDDGRATYLLVYGDGHEWGGEGAHRASQIETAVREATKEGTLKPTAVHITGVGPATADLQRLVAGDTTMLMAVTLALIFGIVALLLRSPVAGIVVVGTVAVSYAAALGASVVIWQHLLHHDLHWAVAPISFIALVAVGADYNLLLAMRIREETHAGLGTGIVRAFGATGGVVTAAGIVFGITMFALAGSSVLSIAQIGVTIGVGLLLDTLIVRTFVLPSLVALLGRWFWWPTVRLVNPRPSPISAGGS
>NZ_AP022591.1|WP_083004982.1|2042958_2044167_-|two-component-sensor-histidine-kinase
MLGAATVSVREWIRRRGELVPLGFNWAFVIFTDVSIVGIVLIAALQRPATDLPATLLAIAVAVAPFALFLVLGIRATFKAPVLCASGTAATAIFLFATSTPVTADFAPLLLVLTVGVVGALTNMLGGLLATAVAAAVLVAASAWDRLDVIALYLSFVGMGWLVGFLMHTQQELIIKQQLAQAQLAAHAAADERRRIAREVHDVIAHSLSITLLHTTAARRGLQQDRDVDDAIDALEQAEQLGRQAMADIRRTVGLLDGAPMKTAPEPGASEIPSLVEEFRRAGLKVDLDVEGRLDRASAAVGLALYRITQESLANVAKHAPEAKSVVRLVISRTSAALTVVNQLPIAVAAPACEGRGLRGMRQRIELLGGRIDIGPSEEGWSVHADIPLDDVGGWRPPWCPS
>NZ_AP022591.1|WP_083004985.1|2042299_2042962_-|response-regulator-transcription-factor
MTGDVAQIAVLLVDDQDLVRSGLRRILRRKDGFVIVAECSDGGEVPDAVARHSPDIVVMDLRMRRVGGIEATRMLCAGGGPPVLALTTFNDDELLSGVLRAGACGFVLKDSSAEELIRAVRAVARGDSYLDPAVTARVLATYRSAAPPPRGTALADLTAREADVLTLIAKGRSNSEIAEELFISGVTVKSHIGRIFVKLGLRDRAAAIVYAYDNGIVTPR
>NZ_AP022591.1|WP_083004895.1|2040995_2042303_+|DUF2252-domain-containing-protein
MQDERESFIVDCLLTAFADLMEADPDAFRTKFRKMAADPFAFYRGSACVFYADVAGRDDRWADERTSGVWIQGDLHTENFGTYMDGEGKLIFDVNDFDEAYIGHFTWDLMRFAASVALMCWQKALSDHQISTLIDTFVRSYVDQVRWFLDADDDSSFSLNLDTARGAVLSTLQSARLSTRAEMLDRLTAVDDWDRRFRDAAGVRRLEDAEREKVEAAFATYLDTIPKTKRFQGITYDIKDVIGKTGHGIGSAGLPTYTLLIEGFNQALDNDAVLSMKQGNVAAPSRVVDHSSLGKHFKHHGHRTAVSQRALQAHADPLLGYTDIDGVGFVVSEISPYEADLDWSELTEPDELAEVIEQLGRAVAKVHCVGDVDSDQKVVEFQTEEAIVAAISGRVDEFASDMVKFGLEYAATVRDDHRHFVEAFREGRIPKVSST
>NZ_AP022591.1|WP_083004991.1|2040313_2040943_-|ComF-family-protein
MLDLVLPLQCGGCGAPSTRWCDACAATLTVRPEDPRLVLPRSDPGVPVYSLGRYAGPRRSAVIAVKEYGRTDLLQPLAAALRVGLVHLLTWGLVGTPLTVVPAPTRRWAARRRGGDPVTRMARAATDGLPGVAVVPALRTRAFVADSVGLSTADRQRNIAGRVRAVRPVTGEALVIDDIVTTGATATESVRVLHTGAARVTAVLVVANA
>NZ_AP022591.1|WP_083004898.1|2039359_2040025_-|ribosome-associated-translation-inhibitor-RaiA
MSSQSLDSRTMVIEDETPEPRPRAEVAVTGRNVEIPDHFRNYVAEKLSRLERFDRTIYLFDVELDHERNRRQRKNCQHVEITARGRGPVVRAEACADSFYGAMESAVDKLAERLRRARDRRKIHYGDKTPVSVAKATAVAPPADAPTTTPPEHDGAALDEHAPGRIVREKEHPATPMTVDDALSQMELVGHDFFLFHDKESDRPCVVYRRHAYDYGLIRLA
>NZ_AP022591.1|WP_083004901.1|2036411_2039243_-|preprotein-translocase-subunit-SecA
MLQKLLRLGEGRMVKRLNGVADYVDSLEGDIEKLTDAELRAKTDEFKKRVDDGESLDDLLPEAFAVAREAAWRVLNQKPFKVQLMGGAALHFGNVAEMKTGEGKTLTSVLPAYLNALSGKGVHIVTVNDYLARRDAEWMGRVHRFLGLEVGVILAQMTPDQRRTAYGADITYGTNNEFGFDYLRDNMAHSLADLVQRGHNFAIVDEVDSILIDEARTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDIRKRTVGVHELGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFQRDKDYIVRDGEVLIVDEFTGRVLVGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLGVVPIPTNKPMIRADQSDLIYKTEEAKYIAVVDDVAERYEKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEASIIAEAGRLGAITVATNMAGRGTDIVLGGNPDFLTDKRLRERGLDPVETPEEYEKGWHEMLSQVKGECAQEAEDVIAAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDELMRRFNGATLEALLTRLNLPDDVPIEAKMVTRAIKSAQTQVEQQNFEVRKNVLKYDEVMNKQRMVIYDERRRILEGENLAEQARKMLVDVITAYVDGATAEGYAEDWDLEQLWTALKQLYPVGIDHHDLIDSDAVGEPGELTREELLDALIADADRAYAEREKELEAIAGEGAMRQLERNVLLNVLDRKWREHLYEMDYLKEGIGLRAMAQRDPLVEYQREGYDMFIGMLEGLKEESVGFLFNVSVEPAPPPTVAPVATPAGLTEFAEAAAAQAQDGGQGAVATKERPVPAGLRAKGIGDESRPLTYSGPSEDGSAQVQRSDNGGGAPRRPAAGGSRKERRQAERQRAREEKAMRRR
>NZ_AP022591.1|WP_109749525.1|2035885_2036380_+|hypothetical-protein
MRTAVIEPVVDCEPAPVGVAACPPPTPKSLRRRQSGGPGAGGRTVHPQRPIPIAPVREPAPSRAAVTFADAALRRVLEVIDRRRPVAQLRPLLAPALIETVLAMTRSPQSTAATLRRIRLRMVDDEGPAAEVFGTYSRGQRIRAIAARIALEGDRWRIVALQIG
>NZ_AP022591.1|WP_083004904.1|2034247_2035657_-|wax-ester/triacylglycerol-synthase-family-O-acyltransferase
MVTRLSAADASFYHLENTSTPMYVGSLSILRKPRGGLSYETLLATVEQRLPQIPRYRQKVREVTLGLARPVWVDDRDFDITYHIRRSALPSPGSDAQLHELIARLGSRPLDKSRPLWEMYLIEGLAKNRIALYTKSHQALVNGMTALEIGHVIADRTQKPPEFGEDIWIPLREPSDRQLLLGAVGEWITRPADQFGALRSAVVDVATNAGQLVAMGRRFVEVARTVARGTAPSSPLNTTVSRNRRLTVASGRLEDFRAVRARYDCDVNDVVLAVVAGALRNWLMSRGEPVTATTRVRAMAPMSVYPDAELDATGPGQAISEVSPFLVDLPVGEPNPVVRLSQIAHTTESASTAATLVDARTIVTLSGFAPPTLHAMGIRVATTFSARQFNLLITNVPGAQHQMYIAGTKLLETYAVPPLLANQVLALGVTSYNGMVYFGINADRDAMSDVDVLPSLLRESLEELLEAAQ
>NZ_AP022591.1|WP_059099010.1|2050826_2051513_-|two-component-system-response-regulator-MtrA
MDSMRQRILVVDDDPSLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGIDVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYVMKPFKPKELVARVRARLRRNEDEPAEMLSIGDVDIDVPAHKVTRQGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGYRHPADTRLVNVHVQRLRAKVEKDPENPQVVLTVRGVGYKAGPP
>NZ_AP022591.1|WP_083004975.1|2051603_2052236_-|dTMP-kinase
MLIVIEGVDGAGKRTLTNGLRTAFEAAGRTVTSLAFPRYGHSVEADMAAEALHGAHGDLAESVYAMALLFALDRAHARAEIERLQAGYDVVILDRYVASNAAYSAARLHQGADGDVVDWVRVLEYERLALPRPDAQVLLAVPTELAAKRAEHRANTEADRPKDAYERDGGLQQRTSDVYAALAAGGWCGRWEVAGPDVDAAALAAQLAAR
>NZ_AP022591.1|WP_067219105.1|2052324_2053011_+|DUF899-domain-containing-protein
MTTHAVGTREQWRAAYERQLAKEKELTRRSTELARERQALPWVRVDKQYLFDTTAGRRTLAELFDGRSQLIVRHFMHGPNTPQGCPGCTFETDNLVGAVPHLAHRDVTFILSSRSPLPVLTAYKQRMGWDVEWVSSGGSDFDADFFEYMHVPTARRDYGSGSGSMLDVMELMALSCFALEDGVVYHTYSTYDRGTEALNATWQLLDRAPKGRGEDFSDWPRKRDEYPA
>NZ_AP022591.1|WP_083004885.1|2053101_2053584_-|hypothetical-protein
MTTPHRPYDQPAAASARREVIASFDNYPDAQHLVDRMSDGGFPVAHISIVGDGVRTVERVTGRMTNGKAALAGAGSGAWFGLLIGLLFAIFAVGPLWIWVVLIATVIGAFWGAVFGFVAHWSTRGGRDFSSIQTLEAQRYDVYVSADHAAEAARYVTPTQ
>NZ_AP022591.1|WP_083004881.1|2053712_2054618_+|DUF1028-domain-containing-protein
MTYSIVARDAQTGLMGVACQSQAFAVGASVPWAVSGSGVIATQSMGEPMYGELGLDILRAGLTAVEALTALRSVDANPERRQVAMIDTCGNVAVYTGEACVPAAGHLEGNGCVALANMVVSEAVWEAMIDAWEHTQASVPARLARALHAAEDEGGDMRGKRSAAMVVVDPTTTGRPWHDRLVDLRVDDHEDPLGMLDRLLALNTRYHNAVEAFDLALGGNIQDALARLDGAPAPDPVRDPDIALWTALVLALGDREDDAARVLAELSSTAPQFVEAARRFSEVRLLPPNTPVTRLLDELQR
>NZ_AP022591.1|WP_109749524.1|2054638_2055931_-|triacylglycerol-lipase
MIALLLIASLGIPPHARADDPTIDDHHPYFNEDEYQAFYTPPDPLPPGQPGDIVRSEPSRLVLEPSGQLGMIMADGTRIMYRSNDARGNPNVVTGTYFEPHVPWPGQGTRPLIVYGPGTQGQGDQCAPSRQFNQGIHWSPYLDLAFNYEELFVATMVARGFAIVMTDYEGLGTPGLHTYANRVSQGHAMLDAARAAKNLPGTSLTRNGPVAFWGYSQGGGAAASAAEMAESYAPEIHVVGSYAGAPPADLKALFPFIDGSMLIGAVGYALNGVITAYPEHEEAIRATLTPRGADMLFKVQDQCVAETLTKFMFRHLQPYFNEDIFALVEKEPYKSLFDEQKLGRMKPNAPVLINANRFDPLVPWAPAMQLGRDWCAQGADVEARTNEQPPFLNKAMVNHGLPMLVDGEPAMQWIADRFNGKPTTPNCGRF
>NZ_AP022591.1|WP_083004973.1|2056048_2057524_-|adenosylhomocysteinase
MTELKADSRNGIDYKVADLALADFGRKEIRLAEHEMPGLMALRREYHDVQPLKGARISGSLHMTVQTAVLIETLVALGAEVRWASCNIFSTQDHAAAAVVVGPNGTPDDPKGTPVFAWKGESLEEYWWAAEQMLTWSAASDGSPAPANMILDDGGDATMMVLRGAQYEKQGVVPPAEEDDPAEWKVFLGVLRKRFETDKDKWTKIAESVKGVTEETTTGVLRLYQFEAAGELPFPAINVNDSVTKSKFDNKYGTRHSLIDGINRGTDVLIGGKKVLICGYGDVGKGCAESLAGQGARVAVTEIDPINALQALMDGFDVVTVEQGIPVADIVITSTGNKDIITLEHMRAMKDQAILGNIGHFDNEIDMAALERSGAKKLNIKPQVDQWILDDGKSIIVLSEGRLLNLGNATGHPSFVMSNSFSNQVIAQIELWTKNDEYDNSVYRLAKHLDEKVARIHVEALGGTLTKLTKEQAEYIGVDVEGPYKPEHYRY
>NZ_AP022591.1|WP_165757350.1|2057640_2058357_-|TetR-family-transcriptional-regulator
MPGLRRGEVGFRDGGGRSFVTVSVAGVSSPRRTAQRVPYAEASRVLLRDSILDGMRELLLTRDWSAITLSHVAKAAGISRQTIYNEFGSRQGLAQAYALRLADRLVDQIDDAIQGNVGDVHAAFSQGFRDFFTESAADPLVISLLTGEAKPDLLQLITTDSGPIITRCSQRLTSTFMDSWVQASEEDAGVLARAIVRLAMSYVSMPPEADHLTTDVVARDLARLMTPFAERYGVIDTP
>NZ_AP022591.1|WP_067219117.1|2058296_2058476_-|rubredoxin
MDYKLFVCVQCGFEYDEAKGWPEDGIAPGTRWDDIPDDWSCPDCGAAKSDFEMVEVARS
>NZ_AP022591.1|WP_067219120.1|2058511_2058673_-|rubredoxin
MSTYRCPGCDYVYDEAKGAPREGFPAGTSWSDIPDDWTCPDCAVREKVDFEPV

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Crispr_ID: NZ_AP022591_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022591_3

4675042-4675160

Orphan

Consensus_repeat	Method
CAACGCGGCCGGGGCCGCTTGATCGTCGTCCGGCTAAATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP022591_3

>merge|NZ_AP022591|3|4675042-4675160|CRISPRCasFinder
CAACGCGGCCGGGGCCGCTTGATCGTCGTCCGGCTAAATCGATCGCCGCACTCTCCCCCGCAAGCGGGAGGTGCCCCCACAACGCGGCCGGGGCCGCTTGATCGTCGTCCGGCTAAATC

>NZ_AP022591|3|3|4675042-4675160|CRISPRCasFinder
CAACGCGGCCGGGGCCGCTTGATCGTCGTCCGGCTAAATC	GATCGCCGCACTCTCCCCCGCAAGCGGGAGGTGCCCCCA
CAACGCGGCCGGGGCCGCTTGATCGTCGTCCGGCTAAATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022591.1\|WP_083001810.1\|4666473_4667418_-\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	unknown	unknown	gnl\|CDD\|274635
NZ_AP022591.1\|WP_067221720.1\|4665392_4665740_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|380093
NZ_AP022591.1\|WP_083001814.1\|4668586_4670218_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
NZ_AP022591.1\|WP_083001825.1\|4677639_4678515_+\|dihydropteroate-synthase	unknown	unknown	gnl\|CDD\|273657
NZ_AP022591.1\|WP_083001806.1\|4663995_4665396_+\|acyl-CoA-synthetase	unknown	unknown	gnl\|CDD\|236096
NZ_AP022591.1\|WP_083001908.1\|4683303_4683891_-\|DUF4126-domain-containing-protein	unknown	unknown	gnl\|CDD\|379253
NZ_AP022591.1\|WP_067221752.1\|4679502_4679862_+\|DivIVA-domain-containing-protein	unknown	unknown	gnl\|CDD\|274639
NZ_AP022591.1\|WP_083001829.1\|4679858_4680524_+\|DNA-3-methyladenine-glycosylase-I	unknown	unknown	gnl\|CDD\|377025
NZ_AP022591.1\|WP_083001820.1\|4672081_4672855_-\|ESX-1-secretion-associated-protein	unknown	unknown	gnl\|CDD\|371259
NZ_AP022591.1\|WP_083001824.1\|4675786_4677568_+\|long-chain-acyl-CoA-synthetase	unknown	unknown	gnl\|CDD\|236217
NZ_AP022591.1\|WP_083001816.1\|4670257_4671385_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022591.1\|WP_083001812.1\|4667442_4668507_+\|succinyl-diaminopimelate-desuccinylase	unknown	unknown	gnl\|CDD\|237264
NZ_AP022591.1\|WP_083001822.1\|4672913_4675004_-\|AAA-family-ATPase	unknown	unknown	unknown
NZ_AP022591.1\|WP_067221760.1\|4682092_4683307_+\|glucose-1-phosphate-adenylyltransferase	unknown	unknown	gnl\|CDD\|234846
NZ_AP022591.1\|WP_083001818.1\|4671397_4672075_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|284762
NZ_AP022591.1\|WP_083001808.1\|4665799_4666357_+\|M15-family-metallopeptidase	unknown	unknown	gnl\|CDD\|350621
NZ_AP022591.1\|WP_067221758.1\|4680794_4681976_-\|glycogen-synthase	unknown	unknown	gnl\|CDD\|273997
NZ_AP022591.1\|WP_083001906.1\|4675176_4675749_+\|TIGR00730-family-Rossman-fold-protein	unknown	unknown	gnl\|CDD\|129813
NZ_AP022591.1\|WP_083001827.1\|4678511_4679462_+\|glucosyl-3-phosphoglycerate-synthase	unknown	unknown	gnl\|CDD\|237556
NZ_AP022591.1\|WP_082686480.1\|4680619_4680805_+\|DUF3117-domain-containing-protein	unknown	unknown	gnl\|CDD\|371461

Protein	Function_ID	Function_description	E-value
NZ_AP022591.1\|WP_083001810.1\|4666473_4667418_-\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	gnl\|CDD\|274635	TIGR03535, DapD_actino, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. This enzyme is part of the diaminopimelate pathway of lysine biosynthesis. This model represents a clade of the enzyme specific to Actinobacteria. Alternate name: tetrahydrodipicolinate N-succinyltransferase.	0
NZ_AP022591.1\|WP_067221720.1\|4665392_4665740_+\|VOC-family-protein	gnl\|CDD\|380093	pfam18029, Glyoxalase_6, Glyoxalase-like domain. This entry comprises a diverse set of domains related to the Glyoxalase domain. The exact specificity of these proteins is uncertain.	1.49046e-30
NZ_AP022591.1\|WP_083001814.1\|4668586_4670218_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	2.33895e-123
NZ_AP022591.1\|WP_083001820.1\|4672081_4672855_-\|ESX-1-secretion-associated-protein	gnl\|CDD\|371259	pfam10824, T7SS_ESX_EspC, Excreted virulence factor EspC, type VII ESX diderm. T7SS_ESX-EspC is a family of exported virulence proteins from largely Acinetobacteria and a few Fimicutes, Gram-positive bacteria. It is exported in conjunction with EspA as an interacting pair.ED F8ADQ6.1/227-313; F8ADQ6.1/227-313;.	1.53775e-10
NZ_AP022591.1\|WP_083001806.1\|4663995_4665396_+\|acyl-CoA-synthetase	gnl\|CDD\|236096	PRK07787, PRK07787, acyl-CoA synthetase; Validated.	0
NZ_AP022591.1\|WP_083001908.1\|4683303_4683891_-\|DUF4126-domain-containing-protein	gnl\|CDD\|379253	pfam13548, DUF4126, Domain of unknown function (DUF4126).	1.90172e-39
NZ_AP022591.1\|WP_067221752.1\|4679502_4679862_+\|DivIVA-domain-containing-protein	gnl\|CDD\|274639	TIGR03544, cell_division_initiation_protein_DivIVA, DivIVA domain. This model describes a domain found in Bacillus subtilis cell division initiation protein DivIVA, and homologs, toward the N-terminus. It is also found as a repeated domain in certain other proteins, including family TIGR03543.	5.91866e-09
NZ_AP022591.1\|WP_083001825.1\|4677639_4678515_+\|dihydropteroate-synthase	gnl\|CDD\|273657	TIGR01496, Dihydropteroate_synthase, dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by model TIGR00284. [Biosynthesis of cofactors, prosthetic groups, and carriers, Folic acid].	6.68472e-102
NZ_AP022591.1\|WP_083001824.1\|4675786_4677568_+\|long-chain-acyl-CoA-synthetase	gnl\|CDD\|236217	PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated.	0
NZ_AP022591.1\|WP_083001829.1\|4679858_4680524_+\|DNA-3-methyladenine-glycosylase-I	gnl\|CDD\|377025	pfam03352, Adenine_glyco, Methyladenine glycosylase. The DNA-3-methyladenine glycosylase I is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.	2.1506e-106
NZ_AP022591.1\|WP_083001812.1\|4667442_4668507_+\|succinyl-diaminopimelate-desuccinylase	gnl\|CDD\|237264	PRK13007, PRK13007, succinyl-diaminopimelate desuccinylase; Reviewed.	0
NZ_AP022591.1\|WP_067221760.1\|4682092_4683307_+\|glucose-1-phosphate-adenylyltransferase	gnl\|CDD\|234846	PRK00844, glgC, glucose-1-phosphate adenylyltransferase; Provisional.	0
NZ_AP022591.1\|WP_083001818.1\|4671397_4672075_+\|hypothetical-protein	gnl\|CDD\|284762	pfam07415, Herpes_LMP2, Gammaherpesvirus latent membrane protein (LMP2) protein. This family consists of several Gammaherpesvirus latent membrane protein (LMP2) proteins. Epstein-Barr virus is a human Gammaherpesvirus that infects and establishes latency in B lymphocytes in vivo. The latent membrane protein 2 (LMP2) gene is expressed in latently infected B cells and encodes two protein isoforms, LMP2A and LMP2B, that are identical except for an additional N-terminal 119 aa cytoplasmic domain which is present in the LMP2A isoform. LMP2A is thought to play a key role in either the establishment or the maintenance of latency and/or the reactivation of productive infection from the latent state. The significance of LMP2B and its role in pathogenesis remain unclear.	0.0005454
NZ_AP022591.1\|WP_083001808.1\|4665799_4666357_+\|M15-family-metallopeptidase	gnl\|CDD\|350621	cd14846, Peptidase_M15_like, Uncharacterized family of the peptidase family M15, subfamily B. This family of uncharacterized proteins, similar to endolysin lys (Clavibacter phage CMP1) and VanYn peptidase, are zinc-binding enzymes that belong to the peptidase M15 subfamily B, involved in bacterial cell wall metabolism.	7.66155e-57
NZ_AP022591.1\|WP_067221758.1\|4680794_4681976_-\|glycogen-synthase	gnl\|CDD\|273997	TIGR02149, glgA_Coryne, glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
NZ_AP022591.1\|WP_083001906.1\|4675176_4675749_+\|TIGR00730-family-Rossman-fold-protein	gnl\|CDD\|129813	TIGR00730, LOG_family_protein_YJL055W, TIGR00730 family protein. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions. [Hypothetical proteins, Conserved].	9.4628e-69
NZ_AP022591.1\|WP_083001827.1\|4678511_4679462_+\|glucosyl-3-phosphoglycerate-synthase	gnl\|CDD\|237556	PRK13915, PRK13915, putative glucosyl-3-phosphoglycerate synthase; Provisional.	0
NZ_AP022591.1\|WP_082686480.1\|4680619_4680805_+\|DUF3117-domain-containing-protein	gnl\|CDD\|371461	pfam11314, DUF3117, Protein of unknown function (DUF3117). This family of proteins with unknown function appears to be restricted to Actinobacteria.	1.43995e-24

>NZ_AP022591.1|WP_083001822.1|4672913_4675004_-|AAA-family-ATPase
MPIEWVTSPPGPALDSIGAGLRNRSGAVLIGPAGVGKTTLARAAVDRFGAEYPRVDWVTATTPMAAVPFAAVSHLIEVPETGKTADVLRCARESLGDGRLLVIDDAHLLDTLSAALVYQLAVGAAAKLIVSVAPNGVMAEGVSALWEDELVERIGLEPPGHDDSRLAARVAEFVAALPTVAHRVLEYLAVDDPLALAELEALAGRDAVDNASTHGAVVVDDGWVRPAHPLFADAVRNALGGPELRRLRGEVVDRLAARAGDTAVDRLRRAVLAVDSDNPQQPAEVAAAAAEALRLGDLALSERLARAALHRAPDLSTRLTLGYALAWQGRGRDADAVLAEVDSAALSEDELMAWALPRAANQFWMLSEPERATAFLRATRNRVTSPMARTTLDALSATFAMNAGSVSRAVELADEVLASPAADDTAVGWAAAAAALSSARTGRFAEVDALADRAIAAGHPGLLRFTSGFGQTTALVMAGKLDRAHELARQLTDFAQLQQPGRAIGEVLVADVLIAKGQLDDAVRLLRRAASVLSPTGYSWAPLAWMLLAQALGQLGAGVEAGRALARAESRHGLKSMLFAPELAVARAWTMSARRDRHGAVAATREAVRSAERGGQTAVALRALLDAVRLGDVRAGDAIGRLSAECDCATGRLALAHGRALAARDAAALAEVSQSYAAAGWHGAAADAAAQSDEHR
>NZ_AP022591.1|WP_083001820.1|4672081_4672855_-|ESX-1-secretion-associated-protein
MSQLNVQTDGVRSYAQIHDRVATDLSQVIGTDASEAAGVQASHGTIASAVGAALSSALGTRRGTVQATARSGETISELLREAARRYDEGDQAGADKLRAAAEALESPQGGAGRPAAPAGPAAATTSPAGGDQMAGQLLGQVGQQVGQAVGGLTASLAGLAQGLGQVPQQVMQAVQGAAGSTADAETRRDAYDEDMRDAADDRAEESRAQDRTPHTERAIDDQPVGHADAGAAASGRAPDVPAEPQRPQPAQTRPQVD
>NZ_AP022591.1|WP_083001818.1|4671397_4672075_+|hypothetical-protein
MSSPLRKPESISWNAAAVELPEIPMIPAGQDAMSATISAVLPTLAAELTANVAALSAKENTFSGKVGAAQVAYQNSEDAGSQSVGQIVGMLGQVGQQAGQMGQMAGAPAQALGGQTGMFGSLMQQAMQGAQGAGGQSAGGQGPGSGGTAAGPAGATAQQPRDETPGGAREPEPGERDERDERQPLHHADDRPWAGAAGPEGTGAGPVPVTPREPGRGDDEIARNV
>NZ_AP022591.1|WP_083001816.1|4670257_4671385_+|hypothetical-protein
MGIAPDSSPYGSQTVTGPGWPNVDEETLAAAAASFEALAAKISGSVVPQQQSQLMHMSDSWEGAGSLAAAGEATTIIGGHEANAAHAAAIAVKLRAMEATVVKTKMLANTIAQEVQHECEAIAAMPFSNTQELVQSRVKMGLSQNIANVTTNTTELASTLAVPPSIPLFGAPPVPGGKEAEDSGEEAAKQAGDGSQQAMQMMSQMGSMAAQLPMQIGQSLMQLPQQMGQQLQQLSQPLQQLTSMFGQGGKADALGAAGLPFSSFSNHPLAGGSGAGGGSGMVRAASLPGSGGAPLQTPQMANLVGSKPVSTAPAAEGAMAGSAVAAGAAPIAAGGGMGGMAPMMGQRGDSGGTVAGLIVPDPLEHDLDEDDDDDW
>NZ_AP022591.1|WP_083001814.1|4668586_4670218_+|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MSSIVCSNLSFAWSDDTPLFEQLSFTVGEGRTGLVAPNGAGKSALLKLIAGELTPTAGAVTVDGTLGYLPQTLPYDGQRTVAEILDIAPVVEALNALAGGETDADLFTTIGDDWDIEERTRAQLDRLGLDHVSLGRRLGTLSGGEVVTIGLAGQLLKRPDVLLLDEPTNNLDVDARHRLYDALGDFTGCLLLVSHDRVLLDRMDRIAELHNGEITFYGGNFTMYAESVSEQQRVAESEVRSAEQHLKREKRERQQARERAARRAGTAARNLKDAGLPKIVAGARKRRAQESAGRIDGVNAARVSDARARLDEAEREVRDDDVLVLDLPDTDVPTGRVVLSANGLRARAGGRTLLADVDLSVRGPERIALTGRNGTGKSTLLRILSGDLEPDDGTVQRADGRVAYLSQRLDLLDPRCTVAESLAAYAPSLSHTRRMHLLAQFLFQGDRIHLRVGALSGGERLRATLACVLYAEPAPQLLLLDEPTNNLDLVSVGQLQSALNAYRGAFIVVSHDERFLADIGVQRRLQLSDGHLESAHRGVSRAR
>NZ_AP022591.1|WP_083001812.1|4667442_4668507_+|succinyl-diaminopimelate-desuccinylase
MSLDLHGDPVALTAALVDIPSESRNEKRIADEVEAALREQTSLEVVRNADAVLARTNLGLPSRVLLAGHLDTVPAADNLPSRLVDGELHGCGTSDMKSGDAVFLHLAATVTAPTHDITLVMYDCEEIEASANGLGRIERELPEWLQADVAILGEPSGGYIEAGCQGTLRVVVNATGTRAHSARSWLGDNAIHKLGAVLDRLASYQARSVEIDGCTYREGLSAVRIDGGIAGNVIPDAASVTVNFRFAPNRSVADALQHVHEVFGGLDVQIELTDSAAGALPGLTRPAAAALVAAAGGQVRAKYGWTDVSRFAALGIPAVNYGPGDPNLAHRADERVEVEKITATTDMLRRYITA
>NZ_AP022591.1|WP_083001810.1|4666473_4667418_-|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase
MTSAAGIGLATIAAAGSVLDTWFPAPELGADGPSGTTRLSVAEVPPEFAELTGRDDDRGVHVVVVRTVIGSLEDKAADAYDAYLRLHLLSHRLVAPHGLNADGFFGVLTNVVWTNHGPCAVEGFESVRARLRKRGPVTVYGVDKFPRMVDYVLPAGVRVADADRVRLGAHLAAGTTVMHEGFVNFNAGTLGSSMVEGRISAGVVVGDGSDVGGGASIMGTLSGGGTEVISVGERCLLGANAGLGISLGDDCVVEAGLYVTAGTKVQTGDGQTVKARELSGANNLLFRRNSLSGAVEVVKRDGTGITLNEALHQN
>NZ_AP022591.1|WP_083001808.1|4665799_4666357_+|M15-family-metallopeptidase
MCTLALASVCAIAACSTPEPAPTPGPAVGQEPLSIGPAAQDTVGGWLPEGTTLSPFDVDDPIVGWLDPELLAAVQEAARRARAEGIEIRINSGWRSKGFQERLFADGVDRYGSVDVAREFVASPEKSKHVTGEAVDIAPVEADRWLIANGRKFGLCQIYANEIWHFELAAVDGRCPPLKPNAAAG
>NZ_AP022591.1|WP_067221720.1|4665392_4665740_+|VOC-family-protein
MTLRFDEICIDSHDASALGRWWSQVLGWAHEIDDDGDVVLHAPPGAGPNWLFLAVPDDKVVKNRIHFDFRPDDQRAEVERVIGLGARRVDIGQGDESWVVLADPEGNEFCILAAP
>NZ_AP022591.1|WP_083001806.1|4663995_4665396_+|acyl-CoA-synthetase
MLLASLNPAAVAGGADIADAVRIDGAVLSRSDLVGAATSVAERVGGARRVAVLATPTVSTVLAVTGCLIAGVPVVPVPADVGAAERRHILTDSGAQAWLGDKPAETDGLQHVPVRLHARSWHRYAEPPADSTALIIYTSGTTGPPKGVVLSRRAIAADIDALAEAWQWTADDILVHGLPLYHVHGLVLGLLGSLRIGNRFVHTGKPSPQAYAAAGGSLYFGVPTVWSRVADDRASATALRSARLLVSGSAPLPVPVFDKVVELTGHRPVERYGSTESLITISTRADGERRPGWVGLPLTGVETRLVGEHGGAVPHDGETIGRLHVRGPTLFDGYLNRPDATAEAVDADGWYRTGDVAVVGPDGMHRIVGRESVDLIKTGGFRVGAGEIEAALLGHPGVREAAVVGVPDDDLGQRIVAFVVGDATAKALIDYVAQELSAHKRPREVRLVKELPRNAMGKVLKKELSG
>NZ_AP022591.1|WP_083001906.1|4675176_4675749_+|TIGR00730-family-Rossman-fold-protein
MSGEPDRQWAVCVYCASGPAHPELLALAEEVGGAIAERGWSLVSGGGNVSAMGALAVAARSRGGHTIGVIPKALVHREVADVDADELVVTDTMRERKQVMEGRADAFIALPGGIGTLEEFFEAWTAGYLGMHAKPVVLLDPIGHYDGLLAWLHGLLDTGYVAREALDRLVVVSDVESAMAACAPRHDQGH
>NZ_AP022591.1|WP_083001824.1|4675786_4677568_+|long-chain-acyl-CoA-synthetase
MTEKSGGRSSVGLLDIAARMPGLIVDVPTILRGVVTGFGARPSAKTSIGRVFQERAARHADKVFLKFGDEQVTYREANETANRYAAVLAARGVGHGDVVGIMLRNSPESVLLMLAAVKCGAIAGMLNYHQRGDVLEHSLGLLNAKAVVAETDFVEPITESGADTSGLITVDELKRLAATAPTGNPPTTAAVLAKDKAFYIFTSGTTGMPKASVMTHYRWLRALAGFGGLGMRLTSKDTLYCCLPLYHNNALTVALSSVLNSGATLALGKSFSASKFWDEVIRYDATAFVYIGEICSYLLSQPEKDTDRAHKVRVMCGNGLRPAIWDDFTERFGIERVCEFYGASEGNTAFVNVFNVPQSTGICPTPVAFVEYDPETGDPLRDDNGRVKKVRNGEAGLLLSKVSSFQPFDGYTDKKESEKKLVRNAFRDGDVWFNTGDLMRSQGFGHASFTDRLGDTFRWKGENVATTEVESAISADPQVEECTVFGVEVEGTGGRAGMAAIQLKEGQEFDGKALAKAAYRKLPGYAVPLFVRVVKELAHTSTFKSQKVDLRKEGYNVEEIDDPIYVLSGRDEGYVEFYDEYPKEVADGKKPKN
>NZ_AP022591.1|WP_083001825.1|4677639_4678515_+|dihydropteroate-synthase
MQSTFLGRPVAGDRALIMAIVNRTPDSFYDRGAAFTDDAAKAAAHRVIEEGADVVDVGGVKAGPGGLVDADEEVARVVPFIEWLRGTYPDQLISVDTWRSVVAKQACAAGADLINDTWAGHDPALPEVAAEFGAGLVCSHTGGAQPRTRPFRVNYGISERGVVDDVIAEVTAAAERAVAAGVARDAVLIDPTHDFGKNTYHGLILLRHVKELVKTGWPVLMALSNKDFVGETLGVGLTERLEGTLAATALAAAAGAAMFRVHEVAPTRRVLEMVASIQGGRPPTRTVRGLA
>NZ_AP022591.1|WP_083001827.1|4678511_4679462_+|glucosyl-3-phosphoglycerate-synthase
MTLTPELPGTAIRTGRWLADHSWNRPSWTIAELEAAKRGRTISVVLPALNEEDTVGSVVETIAPLAGGLVDELVVLDSGSTDDTEIRALAAGARVVSREAALPEVAPQPGKGEVLWRSLAATTGDIVVFVDSDLIDPDPMFVPKLVGPLLTADGVHLVKGFYRRPLKVSGSQDANGGGRVTELVARPLLASLRPELSCILQPLGGEYAGTRELLTSVPFAPGYGVEIGLLIDAYDRLGLDGIAQVNLGVRTHRNRPLTELATMSRQVIATLLSRCGVPDSGVGLTQFFADGDDYTPRTSAVSLADRPPMATLRPRG
>NZ_AP022591.1|WP_067221752.1|4679502_4679862_+|DivIVA-domain-containing-protein
MTLVLLYLVVLVLIAVVLFAVGSVLFGRGEPLPPLPRETTATVLPASGVTGADVDAVKFTQTLRGYKTSEVDWVLDRLGQELDQLRGQLATLRATHGIDDDEPVEGGAHALPSEEGTES
>NZ_AP022591.1|WP_083001829.1|4679858_4680524_+|DNA-3-methyladenine-glycosylase-I
MTATTELAAEPDGRSRCAWIDESRLAPADFVLYRDYHDTEWGRPLRDSGALFERVSLEAFQSGLSWLVILRKRENFRRAFHGFDVEHIARYTERDIARLMADAGIVRNRAKIEATIANARAAVALADTGVELAELLWSFAPPPRPRPAGFADVPAVTPESTAMAKELKRRGFRFVGPTTAYALMQATGMVDDHTANCWVPATSPPSPETAIAGSLHTEHRR
>NZ_AP022591.1|WP_082686480.1|4680619_4680805_+|DUF3117-domain-containing-protein
MWREHSMAAMKPRTGDGPLEATKEGRGIVMRVPLEGGGRLVVELTPDEAAALGDELKNVTS
>NZ_AP022591.1|WP_067221758.1|4680794_4681976_-|glycogen-synthase
MRVAMMTREYPPEVYGGAGVHVTELVAQLRHLCDVDVHCMGAPRPDAIVAQPDPALLGANAALTMLSADLNMVNAAAQAHVVHSHTWYTGLAGHLAGLLYGVPHVLTAHSLEPMRPWKAEQLGGGYRVSSWVEKTAVEAADAVIAVSSGMRDDVLRTYPALDPNRVHVVRNGIDTEVWYPATPEPGESVLAELGVDPTRPIAAFVGRITRQKGVAHLIAAAHDFAPDIQLVLCAGAPDTPEIAAEVTQAVAQLSRARAGVYWVREMLPIVKIREILTAATVFVCPSVYEPLGIVNLEAMACATAVVASDVGGIPEVVADGHTGRLVHYDPQDPTGYETRLAATVNELVADPQRARRYGRAGRQRCIDEFSWAHIAEQTLEIYRKVSDSELTSL
>NZ_AP022591.1|WP_067221760.1|4682092_4683307_+|glucose-1-phosphate-adenylyltransferase
MRELPHVLGIVLAGGEGKRLYPLTADRAKPAVPFGGAYRLIDFVLSNLVNARYLRICVLTQYKSHSLDRHISQNWRLSGLAGEYITPVPAQQRLGPRWYTGSADAIYQSLNLIYDEDPDYIVVFGADHVYRMDPEQMVQFHIESGAGATVAGIRVPRAEATAFGCIDSDESGRIRGFIEKPADPPGTPDDPEQTFVSMGNYIFTTKVLIDAIRADADDDHSDHDMGGDIIPRLVADGMAAVYDFSNNEVPGATERDHGYWRDVGTLDAFYDAHMDLVSVHPVFNLYNKRWPIRGESEMLAPAKFVNGGSAQESVVGAGSIISAASVRNSVLSSNVVVDDGAIVEGSVIMPGARIGRGAVVRHAILDKNVVVGPGEMVGVDLDKDRERFAISAGGVVAVGKGVWI
>NZ_AP022591.1|WP_083001908.1|4683303_4683891_-|DUF4126-domain-containing-protein
MELLTGLGLATAAGLNAYIPLLALGLLSRFTDLVALPHGWAWLENGWVMAIVAVLLVIEIVADKIPALDSVNDAIQTFVRPTAGGIVFGSGTAAQTSAVADPGAFAQSGQWVPVVIGVVVALVVSLTKSAVRPAANVATAGVAAPVLSTVEDGVSVGLVFLAILLPVLVLVAVALLVWAAVRLVRRRRRARAGRG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3762391 : 3823629

Tupanvirus(25.0%)

integrase,protease,holin,transposase

attL 3761573:3761588|attR 3775175:3775190

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3761573:3761588	attL	NA	NA	NA	NA
WP_109749372.1\|3762391_3763714_+\|integrase	site-specific integrase	A0A0E3XBN7	Gordonia_phage	4.3e-57	39.5
WP_131805742.1\|3763990_3764254_-	SHOCT domain-containing protein	NA	NA	NA	NA
WP_083000302.1\|3764333_3765005_-	response regulator transcription factor	NA	NA	NA	NA
WP_109749371.1\|3765001_3766183_-	sensor histidine kinase	NA	NA	NA	NA
WP_082949365.1\|3766317_3766515_+	hypothetical protein	NA	NA	NA	NA
WP_082949357.1\|3766418_3767483_-	PLP-dependent cysteine synthase family protein	NA	NA	NA	NA
WP_067222079.1\|3767521_3768481_-	metallophosphoesterase	NA	NA	NA	NA
WP_083000299.1\|3768552_3770997_-	transglycosylase/D,D-transpeptidase PonA2	NA	NA	NA	NA
WP_059161848.1\|3771292_3771649_+	WhiB family transcriptional regulator	A0A0K1Y796	Mycobacterium_phage	1.2e-09	43.5
WP_083000297.1\|3771650_3772784_-	ArsA family ATPase	NA	NA	NA	NA
WP_083000295.1\|3772783_3773803_-	ArsA family ATPase	NA	NA	NA	NA
WP_094288127.1\|3773851_3774013_+	DUF4177 domain-containing protein	NA	NA	NA	NA
WP_083000292.1\|3774009_3774465_+	RidA family protein	M1I5B0	Acanthocystis_turfacea_Chlorella_virus	6.4e-21	37.7
WP_067222102.1\|3774461_3775238_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
3775175:3775190	attR	NA	NA	NA	NA
WP_059101725.1\|3775252_3775927_-	cAMP-activated global transcriptional regulator CRP	NA	NA	NA	NA
WP_109749370.1\|3776015_3776348_-	hypothetical protein	NA	NA	NA	NA
WP_083000471.1\|3776482_3777226_+	endonuclease III	NA	NA	NA	NA
WP_083000290.1\|3777237_3777885_+	TlpA family protein disulfide reductase	NA	NA	NA	NA
WP_083000289.1\|3777881_3778658_+	CoA pyrophosphatase	NA	NA	NA	NA
WP_067222109.1\|3778654_3779842_+\|protease	acid resistance serine protease MarP	NA	NA	NA	NA
WP_083000287.1\|3779838_3780780_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_067222585.1\|3780780_3781290_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_109749380.1\|3781500_3782148_+	peptidase	NA	NA	NA	NA
WP_083000284.1\|3782237_3784199_-	acetate--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	1.0e-83	39.2
WP_067222119.1\|3784298_3785054_+	oxidoreductase	NA	NA	NA	NA
WP_083000282.1\|3785493_3786351_-	HAD-IB family hydrolase	NA	NA	NA	NA
WP_083000281.1\|3786765_3787830_+	AAA family ATPase	NA	NA	NA	NA
WP_083000279.1\|3787826_3788993_+	TadA family conjugal transfer-associated ATPase	NA	NA	NA	NA
WP_083000278.1\|3788989_3789769_+	hypothetical protein	NA	NA	NA	NA
WP_083000276.1\|3789765_3790335_+	type II secretion system F family protein	NA	NA	NA	NA
WP_067222135.1\|3790358_3790565_+	DUF4244 domain-containing protein	NA	NA	NA	NA
WP_083000469.1\|3790733_3791231_+	flp pilus-assembly TadE/G-like family protein	NA	NA	NA	NA
WP_083000275.1\|3791227_3792259_-	DUF5593 domain-containg protein	NA	NA	NA	NA
WP_083000273.1\|3792551_3794879_-	DEAD/DEAH box helicase	NA	NA	NA	NA
WP_006243848.1\|3795157_3795361_+	cold-shock protein	A0A1X9IGI9	Lactococcus_phage	1.5e-14	56.2
WP_083000272.1\|3795491_3796082_+	hypothetical protein	NA	NA	NA	NA
WP_083000270.1\|3796216_3799021_+	type I DNA topoisomerase	A0A2K9L5F8	Tupanvirus	7.1e-102	31.5
WP_083000268.1\|3799033_3800197_-	hypothetical protein	NA	NA	NA	NA
WP_083000266.1\|3800193_3801801_-	adenylate/guanylate cyclase domain-containing protein	A0A1B1IWY2	uncultured_Mediterranean_phage	1.1e-17	30.7
WP_067222151.1\|3801883_3803092_+	DNA polymerase III subunit delta'	NA	NA	NA	NA
WP_163689902.1\|3803363_3804563_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_083004597.1\|3804708_3805215_-	hypothetical protein	NA	NA	NA	NA
WP_083004789.1\|3805239_3807006_-	hypothetical protein	NA	NA	NA	NA
WP_083004600.1\|3807013_3808060_-	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	7.5e-41	34.6
WP_083004603.1\|3808028_3809237_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	I4AZM3	Saccharomonospora_phage	7.8e-66	47.3
WP_163689760.1\|3809259_3809568_+	hypothetical protein	NA	NA	NA	NA
WP_083004611.1\|3809660_3810980_-	hypothetical protein	NA	NA	NA	NA
WP_083004614.1\|3810993_3812271_-	hypothetical protein	NA	NA	NA	NA
WP_083004792.1\|3812267_3813626_-	M1 family metallopeptidase	NA	NA	NA	NA
WP_083004617.1\|3813622_3817540_-	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	2.4e-39	25.9
WP_067222167.1\|3817788_3818796_+	TerC family protein	A0A291LBC5	Escherichia_phage	1.2e-35	34.3
WP_083004795.1\|3818800_3819952_-	serine hydrolase	NA	NA	NA	NA
WP_083004798.1\|3819985_3820501_-	2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase	NA	NA	NA	NA
WP_067222171.1\|3820589_3821078_-	inorganic diphosphatase	A0A2H4J8U1	uncultured_Caudovirales_phage	1.1e-31	45.6
WP_083004620.1\|3821191_3822571_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA
WP_109749516.1\|3822567_3823629_+\|protease	zinc-dependent metalloprotease	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_AP022591

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection