CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP048600	Helicobacter pylori strain GCT 43 chromosome, complete genome	4 crisprs	DEDDh	1	4	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP048600_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048600_1

638905-639012

Orphan

Consensus_repeat	Method
GAAACCCAAGAAAACCAAGAAAAC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP048600_1

>merge|NZ_CP048600|1|638905-639012|CRISPRCasFinder
TTAGTCAAAGAAATCCAAGAAAATTCTAACGACCAAGAGAATAAAAAGGAAACCCAAGAAAACCAAGAAAACCAAGAAAACCAAGAAAACCAAGAAAACCAAGAAAAC

>NZ_CP048600|1|1|638905-639012|CRISPRCasFinder
TTAGTCAAAGAAATCCAAGAAAAT	TCTAACGACCAAGAG
AATAAAAAGGAAACCCAAGAAAAC	CAAGAAAACCAAGAAAACCAA
GAAAACCAAGAAAACCAAGAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048600.1\|WP_163497890.1\|644479_646690_-\|type-I-DNA-topoisomerase	unknown	unknown	gnl\|CDD\|235516
NZ_CP048600.1\|WP_163497882.1\|630002_630809_-\|septum-site-determining-protein-MinD	unknown	unknown	gnl\|CDD\|225447
NZ_CP048600.1\|WP_163497888.1\|640552_642178_+\|arginine--tRNA-ligase	unknown	unknown	gnl\|CDD\|273085
NZ_CP048600.1\|WP_163497886.1\|636686_637424_+\|outer-membrane-protein	unknown	unknown	gnl\|CDD\|280099
NZ_CP048600.1\|WP_163498370.1\|634262_635150_-\|CMP-N-acetylneuraminic-acid-synthetase	unknown	unknown	gnl\|CDD\|226488
NZ_CP048600.1\|WP_097702498.1\|632852_633791_+\|tetraacyldisaccharide-4'-kinase	unknown	unknown	gnl\|CDD\|224577
NZ_CP048600.1\|WP_042631481.1\|637430_637973_-\|nuclease-NucT	unknown	unknown	gnl\|CDD\|184389
NZ_CP048600.1\|WP_000934558.1\|642286_643042_+\|HugZ-family-heme-oxygenase	unknown	unknown	gnl\|CDD\|200360
NZ_CP048600.1\|WP_025446198.1\|650669_651308_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|180279
NZ_CP048600.1\|WP_000710018.1\|635832_636546_-\|flagellar-basal-body-L-ring-protein-FlgH	unknown	unknown	gnl\|CDD\|234700
NZ_CP048600.1\|WP_000742722.1\|633723_634266_-\|UDP-4-amino-4,-6-dideoxy-N-acetyl-beta-L-altrosamine-N-acetyltransferase	unknown	unknown	gnl\|CDD\|274661
NZ_CP048600.1\|WP_163497891.1\|648459_650343_+\|motility-associated-factor-glycosyltransferase-family-protein	unknown	unknown	gnl\|CDD\|225324
NZ_CP048600.1\|WP_163497892.1\|650352_650649_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048600.1\|WP_163497885.1\|635119_635809_-\|pseudaminic-acid-cytidylyltransferase	unknown	unknown	gnl\|CDD\|274660
NZ_CP048600.1\|WP_163497883.1\|630832_631825_-\|ketol-acid-reductoisomerase	unknown	unknown	gnl\|CDD\|235491
NZ_CP048600.1\|WP_000508583.1\|640310_640550_+\|twin-arginine-translocase-TatA/TatE-family-subunit	unknown	unknown	gnl\|CDD\|234822
NZ_CP048600.1\|WP_163497884.1\|632073_632856_+\|NAD+-synthase	unknown	unknown	gnl\|CDD\|184435
NZ_CP048600.1\|WP_163497889.1\|643560_644487_-\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|223803
NZ_CP048600.1\|WP_000010023.1\|646855_648400_+\|flagellin-B	unknown	unknown	gnl\|CDD\|237440
NZ_CP048600.1\|WP_001058030.1\|639619_640240_+\|guanylate-kinase	unknown	unknown	gnl\|CDD\|213788

Protein	Function_ID	Function_description	E-value
NZ_CP048600.1\|WP_163497890.1\|644479_646690_-\|type-I-DNA-topoisomerase	gnl\|CDD\|235516	PRK05582, PRK05582, type I DNA topoisomerase.	0
NZ_CP048600.1\|WP_163497882.1\|630002_630809_-\|septum-site-determining-protein-MinD	gnl\|CDD\|225447	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning].	1.46856e-150
NZ_CP048600.1\|WP_163497888.1\|640552_642178_+\|arginine--tRNA-ligase	gnl\|CDD\|273085	TIGR00456, Arginine--tRNA_ligase, arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori. [Protein synthesis, tRNA aminoacylation].	0
NZ_CP048600.1\|WP_163497886.1\|636686_637424_+\|outer-membrane-protein	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	3.7154e-51
NZ_CP048600.1\|WP_163498370.1\|634262_635150_-\|CMP-N-acetylneuraminic-acid-synthetase	gnl\|CDD\|226488	COG3980, spsG, Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane].	6.39575e-104
NZ_CP048600.1\|WP_097702498.1\|632852_633791_+\|tetraacyldisaccharide-4'-kinase	gnl\|CDD\|224577	COG1663, LpxK, Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane].	3.96354e-86
NZ_CP048600.1\|WP_042631481.1\|637430_637973_-\|nuclease-NucT	gnl\|CDD\|184389	PRK13912, PRK13912, nuclease NucT; Provisional.	1.09866e-94
NZ_CP048600.1\|WP_000934558.1\|642286_643042_+\|HugZ-family-heme-oxygenase	gnl\|CDD\|200360	TIGR04109, heme_ox_HugZ, heme oxygenase, HugZ family. Members of this protein family are HugZ, a class of heme oxygenase that belongs to the PPOX family (pfam01243) and lacks homology to the HmuO family (pfam01126). Characterized members of this family include HP0318 from Helicobacter pylori and CJ1613c from Campylobacter jejuni. This enzyme releases iron during the conversion of heme to biliverdin.	8.73708e-137
NZ_CP048600.1\|WP_025446198.1\|650669_651308_-\|hypothetical-protein	gnl\|CDD\|180279	PRK05834, PRK05834, hypothetical protein; Provisional.	6.00581e-109
NZ_CP048600.1\|WP_000710018.1\|635832_636546_-\|flagellar-basal-body-L-ring-protein-FlgH	gnl\|CDD\|234700	PRK00249, flgH, flagellar basal body L-ring protein FlgH.	2.14529e-85
NZ_CP048600.1\|WP_000742722.1\|633723_634266_-\|UDP-4-amino-4,-6-dideoxy-N-acetyl-beta-L-altrosamine-N-acetyltransferase	gnl\|CDD\|274661	TIGR03585, PseH, UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.	9.78626e-63
NZ_CP048600.1\|WP_163497891.1\|648459_650343_+\|motility-associated-factor-glycosyltransferase-family-protein	gnl\|CDD\|225324	COG2604, COG2604, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP048600.1\|WP_163497885.1\|635119_635809_-\|pseudaminic-acid-cytidylyltransferase	gnl\|CDD\|274660	TIGR03584, PseF, pseudaminic acid cytidylyltransferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.	1.49037e-120
NZ_CP048600.1\|WP_163497883.1\|630832_631825_-\|ketol-acid-reductoisomerase	gnl\|CDD\|235491	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional.	4.37778e-177
NZ_CP048600.1\|WP_000508583.1\|640310_640550_+\|twin-arginine-translocase-TatA/TatE-family-subunit	gnl\|CDD\|234822	PRK00720, tatA, twin-arginine translocase TatA/TatE family subunit.	4.84708e-21
NZ_CP048600.1\|WP_163497884.1\|632073_632856_+\|NAD+-synthase	gnl\|CDD\|184435	PRK13980, PRK13980, NAD synthetase; Provisional.	3.14952e-123
NZ_CP048600.1\|WP_163497889.1\|643560_644487_-\|radical-SAM-protein	gnl\|CDD\|223803	COG0731, COG0731, Fe-S oxidoreductases [Energy production and conversion].	7.07836e-87
NZ_CP048600.1\|WP_000010023.1\|646855_648400_+\|flagellin-B	gnl\|CDD\|237440	PRK13588, PRK13588, flagellin B; Provisional.	0
NZ_CP048600.1\|WP_001058030.1\|639619_640240_+\|guanylate-kinase	gnl\|CDD\|213788	TIGR03263, Guanylate_kinase, guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP. [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions].	8.38818e-100

>NZ_CP048600.1|WP_042631481.1|637430_637973_-|nuclease-NucT
MFNKFKKIVGVGVLVSCLGVLQAKNSLFVLPYEQRDALNSLISGISSARESVKIAIYSFTHRDIARAIKSVASRGIKVQIIYDYESNHNNKQSTIGYLDKYPNTKVCLLKGLKAKNGNYYGIMHQKVAIIDDKIVFLGSANWSKNAFENNYEVLLKTDDTETILKAKSYYQKMLGSCVGF
>NZ_CP048600.1|WP_163497886.1|636686_637424_+|outer-membrane-protein
MRTLLKMLVGASLLTHALVAKEESAAPSWTKNLYMGFNYQTGSINLMTNIHEVREVTSYQTGYTNIITSVNSVKKLTNMGSNGIGLVMGYNHFFHPDKILGLRYFAFLDWQGYGMRYPKGYYGGNNMITYGVGVDAVWNFFQGSFYQDDIGVDIGVFGGIAIAGNSWYIGSKGQELLGITNSSAVDNTSFQFLFNFGLKALFVDEHEFEIGFKFPTINNKYYTTDALKVQMRRVFAFYVGYNYHF
>NZ_CP048600.1|WP_000710018.1|635832_636546_-|flagellar-basal-body-L-ring-protein-FlgH
MKKALYLGAVAFSVIFSMASANEPKIDFNPPNYVEETPSKEFIPELNKLGSLFGQGERPLFADRRAMKPNDLITIIVSEKASANYSSSKDYKSASGGNSTPPRLTYNGLDERKKQEVQYLDDKNNYNFTKSSNNTNFKGGGSQKKSEDLEIVLSARIIKVLENGNYFIYGNKEVLVDGEKQILKVSGVIRPYDIERNNTIQSKFLADAKIEYTNLGHLSDSNKKKFAADAMETQMPY
>NZ_CP048600.1|WP_163497885.1|635119_635809_-|pseudaminic-acid-cytidylyltransferase
MRAIAIVLARSSSKRIKNKNIIDFFNKPMLAYPIETALNSKLFEKVFISSDSMEYVNLAKNYGASFLNLRPKNLADDRATTLEVMAYHMKELELKDEDIACCLYGASVFLQEKHLKNAFETLKQNQNTDYVFTCSPFSASPYRSFSLENGIQMAFKEHSNTRTQDLKTLYHDVGLLYMGKAQAFKEMRPIFSPNSIALELSPLEVQDIDTLEDLELAKIKYSRLKNACQ
>NZ_CP048600.1|WP_163498370.1|634262_635150_-|CMP-N-acetylneuraminic-acid-synthetase
MQPFEKRMPVKILCDSFLTSGLGHVRRCEKILSFIEKLGVEASLYLHKQDNIGAFLEGVGGNDLLIADSYCLNSKDFYLLKEKAKSLMVIEDKEHAKGFYPKNTKIMNFTLNILKHYNHASKDHYLGVGFYPVDARFIYDRPINTENKEVLITLGGSEQKILKEIVKILENKNVNLHIISPYIPKNPPKNTHYYSPLNPLEFSSLMKFCACAISAAGQTLYELALSQTPSLILPIASNQIIQSKEFESLGIFKQTSLKTLAKDFENLQIQKNQAWAKNLAFGSELEGALREFLEI
>NZ_CP048600.1|WP_000742722.1|633723_634266_-|UDP-4-amino-4,-6-dideoxy-N-acetyl-beta-L-altrosamine-N-acetyltransferase
MKKNYSYKNIQAIDFTQLNDEEKLLVLEFRNHPNTALWMYSANISLKTHLQFIEDLKNSPSHRYFLFKEEGVYLGVGSITKINFFHKHGYLGIYKNPFLKNKGGTILKTLERIAFEELQLHSLHLEVMETNHKAIAFYEKNHYELEGRLKGFISKDKEFIDVLLYYKDKKGYNDQSPLKL
>NZ_CP048600.1|WP_097702498.1|632852_633791_+|tetraacyldisaccharide-4'-kinase
MKSDKPFLERYFYDPTLLQKGLIFALYPFSLIYQCIATIKRKTAKKHDFKIPIISIGNLIAGGSGKTPFILEIAPRYQEVAVVSRGYQRDSKGLVVVSVKGNILVPQKTAGDEAYLLALNLKQASVIVSEKRELGVLKALELGSKIVFLDDGFRFNFNQFNALLKPKVPPYYPFCLPSGLYRESVNSYKEAHLVVTEDKDYKRITSIAHPTKRMLLVTAIANPSRLDAFLPKEVVKKLYFRDHAPFDLELLEKEFYQNNATSLLVTSKDRVKLQDCKLPLSVLDLKLEICPKVLEEIDRYILSYPCNTKERL
>NZ_CP048600.1|WP_163497884.1|632073_632856_+|NAD+-synthase
MQKDYQKLIIYLCDFLEKEVQKRGFKKVVYGLSGGLDSTVVGVLCQKVFKENAHALLMPSSVSMPESKTDALDLCETFSIPYTEYSIAPYDKIFGSHFKDASLIRKGNFCARLRMAFLYDYSLKSDSLVIGTSNKSERMLGYGTLFGDLACAINPIGELFKTEVYELAYYLNIPKKILNKPPSADLFVGQSDEKDLGYPYSVIDPLLKDIEALFQTKPIHLETLTQLGYDEILVKSIISRIQKNAFKLELPTIAKRFNPE
>NZ_CP048600.1|WP_163497883.1|630832_631825_-|ketol-acid-reductoisomerase
MALPVYYDKDIDLGVIQSLQVGIIGYGAQGEAQALNLRDSKVKARIGLYQGSLSALKAKKEGFEVLEIKELVQQSDVIMALLPDELHKEVLEKEVIPFLKEGQIVGFAHGFSVHFNQVILPKGVGAILVAPKGPGSALREEYLKNRGLYHLIAIEQESSKNNAKAVALSYAKAMGGGRMGVLETSFKEECESDLFGEQAVLCGGLEAIVRMGFETLIKAGYPEELAYFECVHEVKLVADLLHYKGVEGLRKHISNTAEFGAIKAREPMGNLLEKRMQKILKKIQNGSFAKDFLLEKSLNYPRLNTERKALKETKIEQIGEILRTPFNHKK
>NZ_CP048600.1|WP_163497882.1|630002_630809_-|septum-site-determining-protein-MinD
MAIVVTITSGKGGVGKSTTTANLAIGLAESGKKVVAVDFDIGLRNLDMILGLENRIVYDVVDVMEENCNLSQALITDKKTKNLSFLAASQSKDKNVLDKEKVAILINALRADFDYILIDSPAGIESGFEHAILHADMALVVVTPEVSSLRDSDRVIGIIDAKSNRAKRGEEVHKHLIINRLKPELVANGEMIPIEEVLKILCLPLIGIIPEDHHIISATNKGEPVIRTDCESAKAYQRITRRILGEEVEYMEFKAKRGFFSALKGIFS
>NZ_CP048600.1|WP_001058030.1|639619_640240_+|guanylate-kinase
MNNDFNLLILSGPSGAGKSTLTKYLQEKIPKTHFSLSTTTRKPREGEVDGLHYNFVSEEEFKQGIEKGQFLEWAIVHNHYYGTSKIPVEKALKEGKIVIFDIDVQGHEILKKHYPNACSVFISTKNQEILKERLLLRGTDSKETIEKRLINAYKEMQCLESFDYLIINEDLEKSKEIILSIAKTLVHRLKAFNFEKICKAWKNESL
>NZ_CP048600.1|WP_000508583.1|640310_640550_+|twin-arginine-translocase-TatA/TatE-family-subunit
MGGFTSIWHWVIVLLVIVLLFGAKKIPELAKGLGSGIKNFKKAVKDDEEEAKNEPKTLDAQATQTKAHESSEIKSKQES
>NZ_CP048600.1|WP_163497888.1|640552_642178_+|arginine--tRNA-ligase
MHTLIKSVLEEILEAEVIIEYPKDREHGHYATPIAFNLAKVFKKSPLAIAEELALKISSHEKTQGFFDSVVACKGYINFTLSLGFLERFTQKALELKEKFGSQVKSERSQKIFLEFVSANPTGPLHIGHARGAVFGDSLAKIARFLGHEVLCEYYVNDMGSQIRLLGLSVWLAYREHVLKESVTYPEVFYKGEYIIEIAKKASNDLEPSLFKENEETIIEVLSGYAKDLMLLEIKDNLDALGIHFDSYASEREIFKRKDAVFDRLEKANALYEKDSKIWLKSSLYQDESDRVLIKEDKSYTYLAGDIVYHDEKFQQNYTKYINIWGADHHGYIARVKASLEFLGYDSSKLEVLLAQMVRLLKDNEPYKMSKRAGNFILIKDVIDDVGKDALRFIFLSKRLDTHLEFDVNTLKKQDSSNPIYYIHYANSRIHTMLEKSPFSKEEILQTPLKNLNAEEKYLLFSTLSLPKAVESSFEEYGLQKMCEYAKTLASEFHRFYNAGKILDTPKAKELLKICLMVSLSLTNAFKLLGIEIKTKISAKD
>NZ_CP048600.1|WP_000934558.1|642286_643042_+|HugZ-family-heme-oxygenase
MLNRIIEHMNAHHVEDMKGLLKKFGQVHHAENVAFKSVDPQGIVIGYNNNQTLRIEFNHEVKDPKDYKNAIIELCQSVEKTHDLKGVEEEVKAFRKDFDSVCLATLHPNGHVVCSYAPLMTDGKQYYIYVSEVAEHFAGLKNNPHNVEVMFLEDESKAKSAILRKRLRYKTNARFIERGAEFDKAFDSFIEKTGGAGGIKTIRAMQDFHLIALDFKEGRFVKGFGQAYDILGDKIAYVGDKGNPHNFAHKK
>NZ_CP048600.1|WP_163497889.1|643560_644487_-|radical-SAM-protein
MAKENPPVVFGPVLSRRFGKSLGVDLSPSKKQCNYNCIYCELGKAKPIERMEEVIKVETLINAIQNALNNLTTPIDVLTITANGEPTLYPHLLELIQSIKPFLKGVKTLILSNGSLFYEPKVQQALKEFDIVKFSLDAIDLKAFERVDKPYSKDINKILEGILRFSQIYQGQLVAEVLLIKGVNDSANNLKLIAAFLKQINIARVDLSTIDRPSSFKAPKLSEDELLKCSLFFEGLCVSLPKRSITQAKKLVSCGIDELLALIFRRPLSAEEAPLILEPSAFKHLETLLNHKQITIKKVGSLEFYCAF
>NZ_CP048600.1|WP_163497890.1|644479_646690_-|type-I-DNA-topoisomerase
MKHLIIVESPAKAKTIKNFLDKNYEVIASKGHVRDLSKFALGIKIDETGFTPNYVVDKDHKELVKQIIELSKKASTTYIATDEDREGEAIGYHVACLIGGKLESYPRIVFHEITQNAILNALKTPRKIDMSKVNAQQARRFLDRIVGFKLSSLISSKITKGLSAGRVQSAALKLVIDREREIKAFKPLTYFTLDAYFESHLEAQLISYKGNKLKAQELIDGKKAQEIKNELEKESYIISSIVKKSKKSPTPPPFMTSTLQQSASSLLGFSPTKTMSIAQKLYEGVATPQGVMGVITYMRTDSLNIAKEALEEARAKILKDYGKDYLPPKAKVYSSKNKNAQEAHEAIRPTSIILEPNALKDYLKPEELKLYTLIYKRFLASQMQDALFESQSVVVACEKGEFKASGRKLLFDGYYKILGNDDKDKLLPNLKENDLIKLEKLESNAHVTEPPARYSEASLIKVLESLGIGRPSTYAPTISLLQNRDYIKVEKKQISALESAFKVIEILEKHFEEIVDSKFSASLEEELDNIAQNKADYQQVLKDFYYPFMDKIEAGKKNIISQKVHEKTGQSCPKCGGELVKKNSRYGEFIACNNYPKCKYVKQTENANNEATQELCEKCGGEMVQKFSRNGAFLACNNYPECKNTKSLKNTPNAKETIEGVKCPECGGDIALKRSKKGSFYGCNNYPKCNFLSNYKPINKRCEKCHYLMSERMYRKKKAHECIKCKERVFLEEDDG
>NZ_CP048600.1|WP_000010023.1|646855_648400_+|flagellin-B
MSFRINTNIAALTSHAVGVQNNRDLSSSLEKLSSGLRINKAADDSSGMAIADSLRSQSANLGQAIRNANDAIGMVQTADKAMDEQIKILDTIKTKAVQAAQDGQTLESRRALQSDIQRLLEELDNIANTTSFNGQQMLSGSFSNKEFQIGAYSNTTVKASIGSTSSDKIGHVRMETSSFSGEGMLASAAAQNLTEVGLNFKQVNGVNDYKIETVRISTSAGTGIGALSEIINRFSNTLGVRASYNVMATGGTPVQSGTVRELTINGVEIGTVNDVHKNDADGRLTNAINSVKDRTGVEASMDIQGRINLHSIDGRAISVHAASASGQVFGGGNFAGISGTQHAVIGRLTLTRTDARDIIVSGVNFSHVGFHSAQGVAEYTVNLRAVRGIFDANVASAAGANANGAQAETNSQGIGAGVTSLKGAMIVMDMADSARTQLDKIRSDMGSVQMELVTTINNISVTQVNVKAAESQIRDVDFAEESANFSKYNILAQSGSFAMAQANAVQQNVLRLLQ
>NZ_CP048600.1|WP_163497891.1|648459_650343_+|motility-associated-factor-glycosyltransferase-family-protein
MDIYQKNLQALFKKDPLLFAKLKAIKENKKYEVFLGNDSANFNLLDKETNTPLFEKSPLDSSLELYKNSEIYMLYPYLYYFGLGNGVFYRLLLGNGNLKRLVVIEPEIEIIFIVLNLLDFSTEILENRLILLHASFCNYNMIASLFDMDKKSRLYARMYDLKLFNAYYERYSHQMIEINQHFTRALEHGAISVGNDAKDALIGIKQHAANLPEVIKSPSLVDFVNALKNRDTAIIVSTGPSLNKQLPLLKEIAPYATLFCIDASFPILARAGIKPDIVLSLERVDLTAKFYEETPLDFQEGVIFALTSIVHKRLIQAVKKGVKQFSFRPFGYTNLFDLHQYGYVGIGMSAANMAYELVVHSRFKRCVFIGQDLSFSQSGNSHASGAIYGDREIKPKKDKDKIFIEKYGGNGEVETTLVWKLFLEFFEKDIFNTPYKLEVINATEGGARIKGTKEMPFKEVCEKIDKSKPKPPINLIYPTQSEQAKNLKIAKQKCEEIIKYANEKKTQVEEVFLKVAPFLEEVEKLHEEKKLEELDFNKLENLSTEIDNVKELFDDKRFSSYFMDAIQSYIFHQELHIAEIVCKKTNNEDELRAKQLEYIYAHKYWLFSLAGGMDCVIEAIKMALKEW
>NZ_CP048600.1|WP_163497892.1|650352_650649_-|hypothetical-protein
MTINTHYTPNFTQLQTLNNINNDATIKDRNQVEQDLQQSSIQDGFSQDNAPNAPDFDRLQALNAINNDGTIKDRSQVEKNLVDGENTPKIYSSLDTYA
>NZ_CP048600.1|WP_025446198.1|650669_651308_-|hypothetical-protein
MLNMNTHTRGIDSGLIHSLQSISLSMFRKGFFGLYQGSISARIGANQFVINKRNAVFDQLNENTLLVLHDKIDYRWKEASLDSPIHASVYREFLDAKFIAYARPPYSLAYSLRHNRLLPRDYLGYRSLGEEIVIFNPKDYDSWQERADTEILRQLQESKKYFVFIKGCGIFAYHRELSKLMEVFDLIENSCKVLRLGDLMDYCYNDDPRLSV

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Crispr_ID: NZ_CP048600_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048600_2

1224675-1224816

Orphan

Consensus_repeat	Method
AGGCAATTGAAGGATTTTTGGAACGATTTAGAGCATGTCTCTAAGCTGGGAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP048600_2

>merge|NZ_CP048600|2|1224675-1224816|CRISPRCasFinder
AGGCAATTGAAGGATTTTTGGAACGATTTAGAGCATGTCTCTAAGCTGGGAAATAAATTCCAGCTATCAGGGGGTATGCATGGCAGATGAGGCAATTGAAGGATTTTTGGAACGATTTAGAGCATGTCTCTAAACTGGGAAA

>NZ_CP048600|2|2|1224675-1224816|CRISPRCasFinder
AGGCAATTGAAGGATTTTTGGAACGATTTAGAGCATGTCTCTAAGCTGGGAAA	TAAATTCCAGCTATCAGGGGGTATGCATGGCAGATG
AGGCAATTGAAGGATTTTTGGAACGATTTAGAGCATGTCTCTAAACTGGGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048600.1\|WP_163498146.1\|1223174_1223405_+\|YdcH-family-protein	unknown	unknown	gnl\|CDD\|225397
NZ_CP048600.1\|WP_078268455.1\|1214691_1215939_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379080
NZ_CP048600.1\|WP_163498147.1\|1223751_1223940_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048600.1\|WP_000534759.1\|1217861_1218866_+\|formamidase	unknown	unknown	gnl\|CDD\|183950
NZ_CP048600.1\|WP_163498145.1\|1220511_1223055_-\|alanine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234701
NZ_CP048600.1\|WP_163498151.1\|1232477_1233485_-\|ferrochelatase	unknown	unknown	gnl\|CDD\|234660
NZ_CP048600.1\|WP_163498152.1\|1233485_1235411_-\|methionine--tRNA-ligase	unknown	unknown	gnl\|CDD\|237028
NZ_CP048600.1\|WP_001238096.1\|1236759_1238631_-\|mechanosensitive-ion-channel-family-protein	unknown	unknown	gnl\|CDD\|366370
NZ_CP048600.1\|WP_001237439.1\|1216017_1216569_+\|DUF507-family-protein	unknown	unknown	gnl\|CDD\|225502
NZ_CP048600.1\|WP_000906664.1\|1227728_1227947_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|224514
NZ_CP048600.1\|WP_163498148.1\|1224098_1224539_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048600.1\|WP_163498149.1\|1228207_1230055_-\|arginine-decarboxylase	unknown	unknown	gnl\|CDD\|224088
NZ_CP048600.1\|WP_001114661.1\|1227939_1228134_+\|type-II-toxin-antitoxin-system-HicA-family-toxin	unknown	unknown	gnl\|CDD\|224638
NZ_CP048600.1\|WP_000255506.1\|1218945_1219203_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048600.1\|WP_163498150.1\|1230069_1231239_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340844
NZ_CP048600.1\|WP_163498143.1\|1216568_1217696_+\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|223579
NZ_CP048600.1\|WP_163498144.1\|1219937_1220510_-\|septum-formation-inhibitor-Maf	unknown	unknown	gnl\|CDD\|179732
NZ_CP048600.1\|WP_097702618.1\|1231243_1231672_-\|PaaI-family-thioesterase	unknown	unknown	gnl\|CDD\|224961
NZ_CP048600.1\|WP_079342091.1\|1235580_1236750_+\|cyclopropane-fatty-acid-synthase	unknown	unknown	gnl\|CDD\|367049
NZ_CP048600.1\|WP_097702619.1\|1231688_1232474_-\|tRNA-5-methoxyuridine(34)/uridine-5-oxyacetic-acid(34)-synthase-CmoB	unknown	unknown	gnl\|CDD\|237898

Protein	Function_ID	Function_description	E-value
NZ_CP048600.1\|WP_163498146.1\|1223174_1223405_+\|YdcH-family-protein	gnl\|CDD\|225397	COG2841, COG2841, Uncharacterized protein conserved in bacteria [Function unknown].	2.77408e-24
NZ_CP048600.1\|WP_078268455.1\|1214691_1215939_+\|hypothetical-protein	gnl\|CDD\|379080	pfam13231, PMT_2, Dolichyl-phosphate-mannose-protein mannosyltransferase. This family contains members that are not captured by pfam02366.	1.09173e-05
NZ_CP048600.1\|WP_097702619.1\|1231688_1232474_-\|tRNA-5-methoxyuridine(34)/uridine-5-oxyacetic-acid(34)-synthase-CmoB	gnl\|CDD\|237898	PRK15068, PRK15068, tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB.	1.79435e-151
NZ_CP048600.1\|WP_163498145.1\|1220511_1223055_-\|alanine--tRNA-ligase	gnl\|CDD\|234701	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.	0
NZ_CP048600.1\|WP_163498151.1\|1232477_1233485_-\|ferrochelatase	gnl\|CDD\|234660	PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional.	0.00337796
NZ_CP048600.1\|WP_163498152.1\|1233485_1235411_-\|methionine--tRNA-ligase	gnl\|CDD\|237028	PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.	0
NZ_CP048600.1\|WP_001238096.1\|1236759_1238631_-\|mechanosensitive-ion-channel-family-protein	gnl\|CDD\|366370	pfam00924, MS_channel, Mechanosensitive ion channel. Two members of this protein family of M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins.	6.51052e-58
NZ_CP048600.1\|WP_001237439.1\|1216017_1216569_+\|DUF507-family-protein	gnl\|CDD\|225502	COG2952, COG2952, Uncharacterized protein conserved in bacteria [Function unknown].	4.32321e-80
NZ_CP048600.1\|WP_000906664.1\|1227728_1227947_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|224514	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	2.4472e-14
NZ_CP048600.1\|WP_097702618.1\|1231243_1231672_-\|PaaI-family-thioesterase	gnl\|CDD\|224961	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis, transport, and catabolism].	2.7024e-10
NZ_CP048600.1\|WP_163498143.1\|1216568_1217696_+\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	gnl\|CDD\|223579	COG0505, CarA, Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism].	0
NZ_CP048600.1\|WP_001114661.1\|1227939_1228134_+\|type-II-toxin-antitoxin-system-HicA-family-toxin	gnl\|CDD\|224638	COG1724, COG1724, Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only].	2.25835e-21
NZ_CP048600.1\|WP_000534759.1\|1217861_1218866_+\|formamidase	gnl\|CDD\|183950	PRK13287, amiF, formamidase; Provisional.	0
NZ_CP048600.1\|WP_163498144.1\|1219937_1220510_-\|septum-formation-inhibitor-Maf	gnl\|CDD\|179732	PRK04056, PRK04056, septum formation inhibitor Maf.	9.00428e-95
NZ_CP048600.1\|WP_163498149.1\|1228207_1230055_-\|arginine-decarboxylase	gnl\|CDD\|224088	COG1166, SpeA, Arginine decarboxylase (spermidine biosynthesis) [Amino acid transport and metabolism].	0
NZ_CP048600.1\|WP_163498150.1\|1230069_1231239_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340844	cd03817, GT4_UGDG-like, UDP-Glc:1,2-diacylglycerol 3-a-glucosyltransferase and similar proteins. This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (EC 2.4.1.337, UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.	3.78412e-117
NZ_CP048600.1\|WP_079342091.1\|1235580_1236750_+\|cyclopropane-fatty-acid-synthase	gnl\|CDD\|367049	pfam02353, CMAS, Mycolic acid cyclopropane synthetase. This family consist of Cyclopropane-fatty-acyl-phospholipid synthase or CFA synthase EC:2.1.1.79 this enzyme catalyze the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid <=> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid.	1.13389e-145

>NZ_CP048600.1|WP_163498148.1|1224098_1224539_+|hypothetical-protein
MTQLEDLKAHEKYNLLLCMVSGAYKGTIPGNEDFKEWCDECTLTGFRPRMGEVAQYEHFELMRKADYVIGIVNEDSTTRGAEVQRSVFALKIDHDTIGTDEEGALKVEGVCAQKGSQEYEELVNKNTWHFTRSTRLGKPKLIKRKS
>NZ_CP048600.1|WP_163498147.1|1223751_1223940_+|hypothetical-protein
MNXIILSFYHSIILSFYHSIILSFYHSIILSFYHSIILSFYHSIILSFYHSIIQSSNATILL
>NZ_CP048600.1|WP_163498146.1|1223174_1223405_+|YdcH-family-protein
MFHEFRDEISVLKANNPHFDKIFEKHNQLDDDIKTAEQQNASDAEISHMKKQKLRLKDEIHGMIIEYREKQKSERA
>NZ_CP048600.1|WP_163498145.1|1220511_1223055_-|alanine--tRNA-ligase
MDIRNEFLQFFQNKGHAVYPSMPLVPNDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSSQLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDLYISVHEKDDEAVKLWEKFVPVDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNNFDSSLFAPLMAEISELTSLDYTSEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRRILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVMKECCEEEERFLETLESGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGACVDMQGFESCMQEQVKRSKASWKGKQNNADFSAILNAYAPNVFVGYETTECCAKALGFFDSDFKEITEAKPNQEVWVLLEKTPFYAEGGGAIGDRGALLKDNEEAAMVLDTKNFFGLNFSLLEIKKTLKKSDQVIAQVSDERLEIAKHHSATHLLQSALREVLGSHVSQAGSLVESKRLRFDFSHAKALNDEELEKVEDLVNAQIFKHLKSQVEHMPLNQAKDKGALALFSEKYAENVRVVSFKEASIELCGGIHVENTGLIGGFRIVKESGVSSGVRRIEAVCGKAFYQLAKEESKELKNAKILLKNSDVIAGINKLKDSVKNSQKAPVSMDLPVEKIHGVNLVVGVVEQGDIKEMIDRLKSKHERLLAMVFKQENERITLACGVKNAPIKANAWANEVAQILGGKGGGRDDFASAGGKDIENLQAALNLAKNTALKALEG
>NZ_CP048600.1|WP_163498144.1|1219937_1220510_-|septum-formation-inhibitor-Maf
MELILGSQSSARANLLKEHGIKFEQKALYFDEESLKTTDPREFVYLACKGKLEKAKELLANNCVIVVADSVVSVGNRMQRKAQNKQEALEFLKRQNGNEIEVLTCSALISPKLEWLDLSVFRARLKAFDPSEIEKYLESGLWQESAGCVRLEDFHKSYIKSSSKNLSVGLGLNVEGLLGALKLGAEIASL
>NZ_CP048600.1|WP_000255506.1|1218945_1219203_-|hypothetical-protein
MVSYSFINLGGGFGISAYYHAHKLACLAGMIYCGYGIITDFNALSAAMWWWSLSKITWFCIGYIALWGLTLIMGFLTCSVIEDYS
>NZ_CP048600.1|WP_000534759.1|1217861_1218866_+|formamidase
MGSIGSMGKPIEGFLVAAIQFPVPIVNSRKDIDHNIESIIRTLHATKAGYPGVELIIFPEYSTQGLNTAKWLSEEFLLDVPGKETEAYAQACKEAKVYGVFSIMERNPDSNKNPYNTAIIIDPQGKIILKYRKLFPWNPIEPWYPGDLGMPVCEGPGGSKLAVCICHDGMIPELAREAAYKGCNVYIRISGYSTQVNDQWILTNRSNAWHNLMYTVSVNLAGYDNVFYYFGEGQICNFDGTTLVQGHRNPWEIVTGEIYPKMADNARLSWGLENNIYNLGHRGYVAKPGGEHDAGLTYIKDLAAGKYKLPWEDHMKIKDGSIYGYPTTGGRFGK
>NZ_CP048600.1|WP_163498143.1|1216568_1217696_+|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit
MVSLYLENGLFLQAQSFGASGTQVGELVFNTSMSGYQEVISDPSYKGQFVVFSMPEIGVVGTNSKDDESFFSCAGVLARHYNEFFSNSRADSSLSLYLKKRGVLGISGVDTRSLIKTLRHYGCLMMVASTIEHDKNKLEEVLKNAPRISHSPLVSSVSTQKIITHQHATFDFNTLDYKPFDEKTPHKIIAVLDFGAKGNILNELQNVGLKALIYPHHTKASELIKAYEKKEISGIFLSNGPGDPLSLQQEIGEIKQLIDAKIPMFGICLGHQLLSIAQGYPTYKLKFGHHGSNHPVKNLETNAVEITAQNHNYCVPEAIEEIATITHRNLFDNTIEGVRYKNAPIISVQHHPESSPGPKESHYIFKEFVELLKGF
>NZ_CP048600.1|WP_001237439.1|1216017_1216569_+|DUF507-family-protein
MRLKLTHITHISHKIANDFIHSKLLELKAPRELLCELIEGILEKSVKKENAIDEQARELLEENTDEIEFMRMDERQLFWMIKRQIAQKEGFHLFWEERCSDLSHQILNKILDEDLIMFSVSENLIRNLIYKSIDTYSKAYESIENEVHEKIKHYKRKLPVGSDEYELVFERLYEEELRRKGFL
>NZ_CP048600.1|WP_078268455.1|1214691_1215939_+|hypothetical-protein
MQLSPLQSALLYFRYFIYPEKKTRSFDLSDLIFIVMVFLVLALGLLMSEEISISYNEAKDFFYSSAWFVQIAQKSTAILGQNDLALRLPFLIAHIINMFLFYLIGRKILKKPKDALYVVLTYALLPGVNLFAILLAKSVLVLSLGLLVSYLYVKTQKIPYLILSACAFLDGAFIPLLLGVFAYALRRRYFKSAIFALVGLGVNIALFSGDFNKGLPSGYFIDTCLELMLLYSPLLFLYYPYTLYKALLDKKPSLLAFMSASGWLFPLLLSMRQEIDLRTFAPLALIGLPLFIKSVLNSLRVRLKEFRGQYYLRVFSLYLLMLTETLFLWGSKISGANEKLLNRHFLAKEVATALQLRGIHQIRTNDKQLALRLQFYGIKEGGRLRLINTKISKKRPDITIIYADKILQSYSLVRH
>NZ_CP048600.1|WP_000906664.1|1227728_1227947_+|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MLINAVIEKDENGYFAFVPFLKGCVSQGKSYEEALRNIKEAIELYLGDLEADELAFLSKKNSVIAPIEIAFA
>NZ_CP048600.1|WP_001114661.1|1227939_1228134_+|type-II-toxin-antitoxin-system-HicA-family-toxin
MPELPRLTAKEAEKLLLQNGFVFSRQKGSHRIYVKDKIRQVLPFHSGEILHPKIVKEIMENTLK
>NZ_CP048600.1|WP_163498149.1|1228207_1230055_-|arginine-decarboxylase
MQEVHDYGIKFWSNNEFKIEKGLVKVCHGKNPSLLEIVQSMRDKGYRGPLLVRFPHLVQKQIKSLFDAFSSAIKEYQYSGAFKAVFPLKVNQMPSFVLPLVQGAKGLNYGLEAGSKSELIIAMSYTNPKAPITVNGFKDKEMIELGFIAKSMQHEITLTIEGLNELKTIIAVAKQNDFVACPKIGIRIRLHSAGTGVWAKSGGINSKFGLSSTEVLEAMRLLEENDLLEHFHMIHFHIGSQISDISPLKKALREAGNLYAELRKMGAKNLNSVNIGGGLAVEYTQHKHHQDKNYTLEEFSADVVFLLREIVKNKQEIEPDIFIESGRYISANHAVLVAPVLELFSHEYNEKSLKIKENNNPPLIDEMLDLLANINEKNAIEYLHDSFDHTESLFTLFDLGYIDLIDRSNTEVLAHLIVKKAVQLLYVKDHNDILRIQEQVQERYLLNCSFFQSLPDYWGLRQNFPVMPLNKLDEKPTRSASLWDITCDSDGEIAFDSTKPLFLHDIDIDEEEYFLAFFLVGAYQEVLGMKHNLFTHPTEFSVVFDEKGDYEVEDICEAQTILDVLDDLDYDTKEIERLLKQKIEDNNQLDMEEKKEIMGRLYVMLSENGYLHTIS
>NZ_CP048600.1|WP_163498150.1|1230069_1231239_-|glycosyltransferase-family-4-protein
MVIVLVVDSFKDTSNGTSMTAFRFFEALKKRGHMMRVVAPHVDNLGSEEEGYYNLKERYIPLVTEISHKQHILFAKPDEKILRKAFKGADMIHTYLPFLLEKTAVKIAREMRVSYIGSFHLQPEHISYNMKLGQFSWLNTMLFSWFKSSHYRYIHHIHCPSKFIVEELEKYNYGGKKYAISNGFDPMFRFEHPQKSLFDTTPFKIAMVGRYSNEKNQSVLIKAVALSRYKQDIVLLLKGKGPDEKKIKLLAQKLGVKTEFGFVNSHELLEILKTCTLYVHTANVESEAIACLEAISVGIVPVIANSPLSATRQFALDERSLFEPNNAKDLSAKIDWWLENKLERERMQNEYAKSALNYTLENSVIQIEKVYEEAIKDFKNNPNLFKTLS
>NZ_CP048600.1|WP_097702618.1|1231243_1231672_-|PaaI-family-thioesterase
MQESVVHVDYDSLETCKNFKPSVGTELVVLEKNIAHVRFKGNENMVYEENFVHAGFMLLACNYAALCALNKKYSVVVSNNINFYAPIELNQEALIKAQVIQDGVKKAEIRIEAFVLDIQVLEGMVEIVVFDKKPFKFNFKEE
>NZ_CP048600.1|WP_097702619.1|1231688_1232474_-|tRNA-5-methoxyuridine(34)/uridine-5-oxyacetic-acid(34)-synthase-CmoB
MLICNDNLNPKTLLEEIMALRPWRKGPFEISQIKIDSEWDSSIKWDLIKNATPLKDKIVADVGCNNGYYLFKMLEYGPKSLVGFDPGVLVKKQFEFLAPFFDKEKKIIYESLGVEGLHEKYPNAFDVIFCLGVLYHRKSPLEALKALYHALKIKGELVLDTLIIDSPLDIALCPKKTYAKMKNVYFIPSVSALKGWCERVGFENFEILSVLKTTPKEQRKTDFILGQSLEDFLDKTDHSKTLEGYDAPLRGYFKMLKPSKR
>NZ_CP048600.1|WP_163498151.1|1232477_1233485_-|ferrochelatase
MRLGVNEAVELSLGELQNTPSISYFNSIVLSLNKVQKGSLFAAKDHALIPKALELGAYGILYTGEYPLSDKDVAWIKLKDIEHSLNHLFKFCLLNEHVVGALLSPIELEIASKIIVSGFVWCLKESLEDLFIMEGCKIAFFDKLEWLHLFYKQERLKEDLKESRLMILNQSFFCSALVYEKQEYELKMPCIFLEPLKRVIQLCEKLQIAFDLNLLGKKEYPLDHCKPFFVNKNLEIAPYGATARVVIAETSKELFETMLQKAFETLSWGKIVVFCRKNSAAFFEKNNPYCYTTHNNLKEQLKNLAFNFAFIYGISSHHLESLLNPPLFKKTPTLW
>NZ_CP048600.1|WP_163498152.1|1233485_1235411_-|methionine--tRNA-ligase
MQKSLITTPIYYVNDIPHIGHAYTTLIADTLKKYYTLQGEEVFFLTGTDEHGQKIEQSARLRNQSPKAYADSISAIFKNQWDFFNLDYDGFIRTTDSEHQKCVQNAFEIMFEKGDIYKGTYSGYYCVSCESYCAISKTDNTNDKVLCPDCLRETTLLEEESYFFKLSAYEKPLLDFYAKNPEAILPIYRKNEVTSFIEQGLLDLSITRTSFEWGIPLPKKMNDPKHVVYVWLDALLNYASALGYLNGLDNKMAHFERARHIVGKDILRFHAIYWPAFLMSLNLPLFKQLCVHGWWTIEGVKMSKSLGNVLDAQKIAMEYGIEELRYFLLREVPFGQDGDFSKKALIERINANLNNDLGNLLNRLLGMAKKYFNYSLKSTKITAYYPKELEKAHQILDNANSFVPKMQLHKALEELFNIYDFLNKLIAKEEPWVLHKNNESEKLEALLSLIANALLQSSFLLYAFMPKSAMKLASAFRVEITPNNYERFFKAKKLQDMVLQDTEPLFCKMEKVEKAPLTQAEKKEKEKTPPTQENYISIEDFKKVEIKVGLIKEAQRIEKSNKLLRLKVDLGENRLRQIISGIALDYEPESLVGQMVCVVANLKPAKLMGEMSEGMILAVRDSDNLALISPTKEKIAGSLIS
>NZ_CP048600.1|WP_079342091.1|1235580_1236750_+|cyclopropane-fatty-acid-synthase
MISKFLLKSMFKQWKNGDYQVVFWDNSVYRNGEHSPKFTLKIHRPLKFSDIKKDMSLTIAEAYMDGVIDIEGSMDEVMHSLYLQTNYEHLHKHDSAKAVQKPLKESSNISKHYDLGNDFYSIWLDETLSYSCAYFKKDDDTLHAAQLQKLDHTLKKLHLKQGEKLLDIGCGWGYLSIKAAQEYGAEVMGITISSEQYKQANKRVQELGLEDKVTIKLLNYQDLDGRLYRFDKVVSVGMFEHVGKDNLPFYFKKVKEVLKRGGMFLLHSILCCFEGKTNAWVDKYIFPGGYLPSLREVMSVMSECDFHLLMAESLRIHYAKTLDIWRDNFNHNLDQVKKLGYDERFIRMWDLYLRTCASAFRVGSADLFQLLLTNSVDNTFPLTKEYIYQ
>NZ_CP048600.1|WP_001238096.1|1236759_1238631_-|mechanosensitive-ion-channel-family-protein
MRLLLWWVLVLSLFLNPLRAVEEHETDAVDLFLIFNQINQLNQVIETYKKNPERSAEISLYNTQKNDLIKSLTSKVLNERDKIGIDINQNLKEQEKIKKRLSKSIKGDDFYTFMKDRLSLDILLIDEILYRFIDKIRSSIDIFSEQKDVESISDAFLLRLGQFKLYTFPKNLGNVKMHELEQMFSDYELRLNTYTEVLRYIKNHPKEVLPKNLIMEVNMDFVLNKISKVLPFTTHSLQVSKIVLALMILALLLGLRKLITWLLALLLDRIFEIMQRNKKMHVNVQSSIVSPVSVFLALFSCDVALDIFYYPNASPPKVSMWVGAVYIMLLAWLVIALFKGYGEALVTNMATKSTHNFRKEVINLILKVVYFLIFIVALLGVLKQLGFNVSAIIASLGIGGLAVALAVKDVLANFFASVILLLDNSFSQGDWIVCGEVEGTVVEMGLRRTTIRAFDNALLSVPNSELAGKPIRNWSRRKVGRRIKMEIGLTYSSSQSALQLCVKDIKEMLENHPKIANGADSALQNASDYRYMFKKDIVSIDDFLGYKNNLFVFLDQFADSSINILVYCFSKTVVWEEWLEVKEDVMLKIMGIVEKHHLSFAFPSQSLYVESLPEVSLKEGAKI

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Crispr_ID: NZ_CP048600_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048600_3

1325741-1325841

Orphan

Consensus_repeat	Method
ATGAAAAAATCCTTTTTAGCGTTTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP048600_3

>merge|NZ_CP048600|3|1325741-1325841|CRISPRCasFinder
ATGAAAAAATCCTTTTTAGCGTTTTTTATAACCAATGATAAAAGAGCTTGCCAAAAGCAAGCGATAATTTTAAAAATGAAAAAATCCTTTTTAGCGTTTTT

>NZ_CP048600|3|3|1325741-1325841|CRISPRCasFinder
ATGAAAAAATCCTTTTTAGCGTTTTT	TATAACCAATGATAAAAGAGCTTGCCAAAAGCAAGCGATAATTTTAAAA
ATGAAAAAATCCTTTTTAGCGTTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048600.1\|WP_163498197.1\|1318002_1319334_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341025
NZ_CP048600.1\|WP_108565105.1\|1324299_1325043_+\|carbonic-anhydrase	unknown	unknown	gnl\|CDD\|225875
NZ_CP048600.1\|WP_163498193.1\|1311712_1313638_-\|Hop-family-adhesin-HopQ	unknown	unknown	gnl\|CDD\|375731
NZ_CP048600.1\|WP_163498202.1\|1328177_1328480_+\|type-II-toxin-antitoxin-system-YafQ-family-toxin	unknown	unknown	gnl\|CDD\|225583
NZ_CP048600.1\|WP_163498196.1\|1316428_1317685_-\|NupC/NupG-family-nucleoside-CNT-transporter	unknown	unknown	gnl\|CDD\|224883
NZ_CP048600.1\|WP_163498198.1\|1326387_1326762_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048600.1\|WP_001931042.1\|1322846_1324022_-\|sugar-transporter	unknown	unknown	gnl\|CDD\|179591
NZ_CP048600.1\|WP_000542854.1\|1320120_1321272_-\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|223551
NZ_CP048600.1\|WP_163498194.1\|1314477_1315179_-\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|188024
NZ_CP048600.1\|WP_163498195.1\|1315175_1316417_-\|phosphopentomutase	unknown	unknown	gnl\|CDD\|235430
NZ_CP048600.1\|WP_078244516.1\|1319353_1320124_+\|tRNA-2-thiocytidine(32)-synthetase-TtcA	unknown	unknown	gnl\|CDD\|236737
NZ_CP048600.1\|WP_001135604.1\|1328558_1329083_-\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|224523
NZ_CP048600.1\|WP_097695391.1\|1321297_1322677_-\|HP1184-family-multidrug-efflux-MATE-transporter	unknown	unknown	gnl\|CDD\|240548
NZ_CP048600.1\|WP_163498395.1\|1331932_1332997_+\|glycosyltransferase-family-8-protein	unknown	unknown	gnl\|CDD\|224359
NZ_CP048600.1\|WP_163498199.1\|1326742_1327009_+\|type-II-toxin-antitoxin-system-YafQ-family-toxin	unknown	unknown	gnl\|CDD\|379750
NZ_CP048600.1\|WP_163498201.1\|1327905_1328169_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048600.1\|WP_163498200.1\|1327056_1327308_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048600.1\|WP_163498203.1\|1329222_1330071_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187632
NZ_CP048600.1\|WP_163498204.1\|1331043_1331811_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
NZ_CP048600.1\|WP_000921470.1\|1330063_1331044_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439

Protein	Function_ID	Function_description	E-value
NZ_CP048600.1\|WP_163498197.1\|1318002_1319334_+\|MFS-transporter	gnl\|CDD\|341025	cd17472, MFS_YajR_like, Escherichia coli inner membrane transport protein YajR and similar multidrug-efflux transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli inner membrane transport protein YajR and some uncharacterized multidrug-efflux transporters. YajR is a putative proton-driven major facilitator superfamily (MFS) transporter found in many gram-negative bacteria. Unlike most MFS transporters, YajR contains a C-terminal, cytosolic YAM domain, which may play an essential role for the proper functioning of the transporter. YajR-like transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.85332e-121
NZ_CP048600.1\|WP_108565105.1\|1324299_1325043_+\|carbonic-anhydrase	gnl\|CDD\|225875	COG3338, Cah, Carbonic anhydrase [Inorganic ion transport and metabolism].	1.84776e-124
NZ_CP048600.1\|WP_163498193.1\|1311712_1313638_-\|Hop-family-adhesin-HopQ	gnl\|CDD\|375731	pfam18304, SabA_adhesion, SabA N-terminal extracellular adhesion domain. This is the N-terminal extracellular adhesion domain of Sialic acid binding adhesin (SabA) present in Helicobacter pylori. The N-terminal domain of SabA functions as a sugar-binding adhesion domain with conserved disulfide bonds. Notably, these amino acid residues are not only conserved among SabA orthologs but also between SabA and BabA.	6.33054e-93
NZ_CP048600.1\|WP_163498202.1\|1328177_1328480_+\|type-II-toxin-antitoxin-system-YafQ-family-toxin	gnl\|CDD\|225583	COG3041, COG3041, Uncharacterized protein conserved in bacteria [Function unknown].	1.96535e-34
NZ_CP048600.1\|WP_163498199.1\|1326742_1327009_+\|type-II-toxin-antitoxin-system-YafQ-family-toxin	gnl\|CDD\|379750	pfam15738, YafQ_toxin, Bacterial toxin of type II toxin-antitoxin system, YafQ. YafQ is a family of bacterial toxin ribonucleases of type II toxin-antitoxin systems. The E.coli gene is expressed from the dinB operon. The cognate antitoxin for the E. coli protein is DinJ, in family RelB_antitoxin, pfam02604.	2.15062e-33
NZ_CP048600.1\|WP_000542854.1\|1320120_1321272_-\|cation:proton-antiporter	gnl\|CDD\|223551	COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism].	7.87577e-37
NZ_CP048600.1\|WP_001931042.1\|1322846_1324022_-\|sugar-transporter	gnl\|CDD\|179591	PRK03545, PRK03545, putative arabinose transporter; Provisional.	0
NZ_CP048600.1\|WP_163498194.1\|1314477_1315179_-\|purine-nucleoside-phosphorylase	gnl\|CDD\|188024	TIGR00107, Purine_nucleoside_phosphorylase_DeoD-type, purine-nucleoside phosphorylase, family 1 (deoD). Purine nucleoside phosphorylase (also called inosine phosphorylase) is a purine salvage enzyme. Purine nucleosides, such as guanosine, inosine, or xanthosine, plus orthophosphate, can be converted to their respective purine bases (guanine, hypoxanthine, or xanthine) plus ribose-1-phosphate. This family of purine nucleoside phosphorylase is restricted to the bacteria. [Purines, pyrimidines, nucleosides, and nucleotides, Salvage of nucleosides and nucleotides].	8.95519e-143
NZ_CP048600.1\|WP_163498195.1\|1315175_1316417_-\|phosphopentomutase	gnl\|CDD\|235430	PRK05362, PRK05362, phosphopentomutase; Provisional.	0
NZ_CP048600.1\|WP_078244516.1\|1319353_1320124_+\|tRNA-2-thiocytidine(32)-synthetase-TtcA	gnl\|CDD\|236737	PRK10696, PRK10696, tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional.	3.77836e-68
NZ_CP048600.1\|WP_001135604.1\|1328558_1329083_-\|acyl-CoA-thioesterase	gnl\|CDD\|224523	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism].	1.82202e-64
NZ_CP048600.1\|WP_097695391.1\|1321297_1322677_-\|HP1184-family-multidrug-efflux-MATE-transporter	gnl\|CDD\|240548	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Streptococcus aureus MepA and Vibrio vulnificus VmrA and functions most likely as a multidrug efflux pump.	2.07306e-100
NZ_CP048600.1\|WP_163498395.1\|1331932_1332997_+\|glycosyltransferase-family-8-protein	gnl\|CDD\|224359	COG1442, RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane].	6.64153e-96
NZ_CP048600.1\|WP_163498196.1\|1316428_1317685_-\|NupC/NupG-family-nucleoside-CNT-transporter	gnl\|CDD\|224883	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism].	1.28679e-171
NZ_CP048600.1\|WP_163498203.1\|1329222_1330071_+\|SDR-family-oxidoreductase	gnl\|CDD\|187632	cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs. 17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	8.98312e-91
NZ_CP048600.1\|WP_163498204.1\|1331043_1331811_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	1.96889e-99
NZ_CP048600.1\|WP_000921470.1\|1330063_1331044_+\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	2.27202e-66

>NZ_CP048600.1|WP_108565105.1|1324299_1325043_+|carbonic-anhydrase
MKKTFLIALALAASLIGAENTKWDYKNKENGPHRWDKLHKDFEVCKSGKSQSPINIEHYYHTQDKADLQFKYAASKPKAVFFTHHTLKASFEPTNHINYRGHDYVLDNVHFHAPMEFLINNKTRPLSVHFVHKDAKGRLLVLAIGFEEGKENPNLNPILEGIQKKQNFKEVALDAFLPKSINYYHFNGSLTAPPCTEGVAWFVIEEPLEVSAKQLAEIKKRMKNSPNQRPVQPDYNTVIIKSSAETR
>NZ_CP048600.1|WP_001931042.1|1322846_1324022_-|sugar-transporter
MMMTKQSYQRFALMRVFVFSLSAFIFNTTEFVPVALLSDIAKSFEMESATVGLMITAYAWVVSLGSLPLMLLSAKVERKRLLLFLFALFILSHILSALAWNFWVLLISRIGIAFAHSIFWSITASLVIRVAPRNKKQQALGLLALGSSLAMILGLPLGRIIGQMLDWRSTFGVIGGVATLIALLMWKLLPPLPSKNAGTLASVPILMKRPLLMGIYLLVIMVISGHFTTYSYIEPFIIQISQFSPDITTLMLFVFGLAGVAGSFLFGRLYAKNSRKFIAFAMVLVICPQLLLFLFKHLEWVVFLQIFLWGIGITSLGISLQMRVLQLAPDATDVASAIYSGSYNVGIGSGALFGSIVIHQLGLGYIGFVGGALGLLALFWLRFITIKFKKT
>NZ_CP048600.1|WP_097695391.1|1321297_1322677_-|HP1184-family-multidrug-efflux-MATE-transporter
MLKKKIDLHKDSIRKLFFYYFIPLVFSMISLSTYSMVDGMFVGKKLGKEAIAAVNIAWPIFPGLIAYELLFGFGAASIVGYFLGQNKTHRARLVFSSVFYFVAISAFILSMALLPFSETIARFFGSNDALLSMSKRYIEIILMGAVFMVLHPLADVFVVNDKRPVLAMVAMLIGSLANIFFNYWFIFVLEVGVQGSAIATVIGHAIGVLVLMQHFWRKKGQLYFIKRFSLSSVISSAKSGVPQSTAEFSASIMILLFNTAIMHTAGERFVSMYGIVMYNAIIFFTTLFAISQGIQPIASFSYGARNLERVRAVFVFGLKAAFCIGIFFYGAYYFLDEFLIKLYLQPSEQDSLFMQETKRAMNIYYVGYVFLGMTLLCAVFFQSIQRTKSSFIITLSHTLGFIVILLPILSHFYGVNGIWVTYPIAQFLAFLVALGVTYYEIKKGVFTTYKEQNLVILKT
>NZ_CP048600.1|WP_000542854.1|1320120_1321272_-|cation:proton-antiporter
MHAEFFTFALIMLLIVIAPYVSRISRLPITVVEILFGSVGAYVGFIEPTKGFEIMSEIGFLFLMFLCGLEVEIYLFKKLGVSLLKRIFAYLLILYTLSFILTFSLNLEPIFMVIFPIISLGMIMTLVKDYRKEILWLDLVLKVGVIGELLSIFGLVVVDGVYSHGLGVELIKDLGILIVFLILIIVAFQIFKTLFWWFPHLKLFVMPKSSQFNQDVRFSLMLFFSLVAIVVWLKIEMVLGAFLAGLVVSTFFPHKSELIHKLNDVGFGFFVPLFFIHVGSTLDLKLVFLNPHLILQGILIVIAMLSLHLITSTLLWRKYFKEAKHLFSFALGASMPLTFLVTTAAVGLKAQAISQNTYYALLMAAIFEGVLFTIAIKMLNKKA
>NZ_CP048600.1|WP_078244516.1|1319353_1320124_+|tRNA-2-thiocytidine(32)-synthetase-TtcA
MAYEISKKVLHIVGKTNATYKLIEEGDKILLGLSGGKDSIMLACILARMQKHAPFKFDFKAVTVHYGLGENLKWLSDLCQEQGIEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDAVESFFMNFTYNGSLRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPDCNCPAKQPTSDKPPIARLATKNFLKEMQNLHPHFFDSLENAFNNVQANSFSDAKYLDALKL
>NZ_CP048600.1|WP_163498197.1|1318002_1319334_+|MFS-transporter
MFKKIFPLALVSSLRFLGLFIVLPIISLYADSFHSSSPLLVGLAVGGAYLTQIIFQTPMGILSDKIGRKVVVMVCLLLFLIGSLVCFVANDIITLVIGRFIQGMGALGGVVSAMVADEVKEEERTKAMAIMGAFIFISFTISMAIGPGVVAFFGGAKWLFLLTAILTLLSLLMLLKVKDAPKISYQIKNIKAYQPNSKALYLLYISSFFEKAFMTLIFVLIPLALVNEFHKDESFLILVYVPGALLGVLSMGIASVMAEKYNKPKGVMLSGVLLFIVSYLCLFLADSSFLGKYLWLFIVGVAFFFIGFATLEPIMQSLASKFARANEKGKVLGQFTTFGYLGSFVGGVSGGLSYHHLGVSNTSLIIVALGLIWGLSLFLLHNPSKQKNVYFPLDAYNEEQFETLGDKIIEWYVNVSEEIIIVKYNSDHISEEEIIHLARNFRK
>NZ_CP048600.1|WP_163498196.1|1316428_1317685_-|NupC/NupG-family-nucleoside-CNT-transporter
MIFSSLFSVVGMAVLFLIAWVFSSNKRAINYRTIVSAFVIQVALGALALYVPLGREMLQGLASGIQSVIGYGYEGVRFLFGNLAPNAKGDQGIGGFIFAINVLAIIIFFASLISLLYYLKIMPLVINLIGGALQKCLGTSKAESMSAAANIFVAHTEAPLVIKPYLKSMSDSEIFAVMCVGMASVAGPVLAGYASMGIPLPYLIAASFMSAPGGLLFAKIIYPQNEAISSHADVSVEKHVNAIEAIANGASTGLNLALHVGAMLLAFVGMLALINGLLGVVGGFLGMEHLSLGLILGALLKPLAFILGIPWSQAGIAGEIIGIKIALNEFVGYMQFLPYLGDNPPLILSEKTKAIITFALCGFANLSSVAMLIGGLGSLVPKKKDLIIRLALKAVLVGTLSNFMSATIAGLFIGLNAH
>NZ_CP048600.1|WP_163498195.1|1315175_1316417_-|phosphopentomutase
MQKRVVVLLLDSFGIGASEDAKDFGDLEANTLGNIAKACFNNLADSNDRNGALKLPNLEGLGLGLSALKAANELPLGFQLKPNLIGAYAYAQELSSAKDTISGHWEMMGVPVLFEWGYFKDKTHSFPKEILDEIARKTKIKGYLGNCHASGTEIIKDLGEKHLETLYPIFYTSADSVFQIAAHEEKFGLDNLYALCEEAFQILEPLKIARVIARPFIGTNRENFKRTVNRKDYAIKPHKKLLFETFIEEKQGEVISIGKIADIYAHVGITQKFKAGSLMELCDVTLERVKNAPNNSLIFTNFVHFDSDYGHRRDVSGYANALEYFDTRLKEVLDNLRENDLLILCADHGCDPSFKGTDHTREYIPVLFYHKDLQPAFLGKSETFADIGQSIAHFLGLSPLDYGKNLLKFKGQP
>NZ_CP048600.1|WP_163498194.1|1314477_1315179_-|purine-nucleoside-phosphorylase
MTPHINAKIGDFYPQCLLCGDPLRVSYIAKNFLQDAKEITNVRNMLGFSGKYKGKGISLMGHGMGIASCTIYVTELIKTYQVKELLRIGTCGAISPKVGLKDITMATGASTDSKTNRVRFLNHDLSATPDFELSLRAYQTAKRLGIDLKIGNVFSSDFFYSFETHAFDLMAQYNHLAIEMEAAGLYATAMELNAKALCLCSVSDHLITKEALSPKERVESFDNMIILALEMMS
>NZ_CP048600.1|WP_163498193.1|1311712_1313638_-|Hop-family-adhesin-HopQ
MKKTKKTILLSLTLASSLLHAEDNGVFLSVGYQIGEAVQKVKNADKVQKLSDTYEQLSRLLTNDSGTNSKTSAQAINQAVNNLNEHAKTLAGGTTNSPAYQATLLALRSVLGLWNSMGYAVVCGGYIKSPGENNQKNFHYTDENGNGTRINCGGSTNSDGSHSSSGTNTLKADKGVSLSIKQYEDIHEAYQILSKALKQAGLAPLNSKGEKLEAHVTTSKDQQGTSSDQTTTTTSVIDTTNTAQNLLNQAQTIINTLQDQCPMLIGKSTSGNSGANNAPSWQTTGNLKSCEVFSKEFSATSDMIKNAQKIVQETQQLNANQPKNITQPNNFNLNTPSSLTALAQKMLKNAQSQAEILKLANQVESDFNKLSSGYLKDYIGKCDASAISSANMTMQNQKNNWGNGCASVKETLASLKASAADFNNQTPQLDQAQNLANTLIQELGNNPFRNMGMIASSTTNNGALNGFGVQVGYKQFFGEKKRWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGSDLLFNFINDKNTNFLGKNNQISFGLFGGIALAGTSWLNSQFVNLKTISNVYSAKVNTANFQFLFNLGLRTNLARPKKKDSHHAAQHGMELGVKIPTINTNYYSYLGTKLEYRRLYSVYLNYVFAY
>NZ_CP048600.1|WP_163498198.1|1326387_1326762_+|hypothetical-protein
MPNATDKDYTQYSQRQLFNLIHQLERKIKKMQNDRVSFKEKMAKELEKRDQNFKDKIDALNELLQKISQAFDDKRDCCFGHETPNIQTQQAMRDADNKETDLFVEDFSSYSNERKKALGVEAQS
>NZ_CP048600.1|WP_163498199.1|1326742_1327009_+|type-II-toxin-antitoxin-system-YafQ-family-toxin
MLKLNLKKSFQKDFDKLLLNGFDDSVLKEVILTLRKKEPLPQPFKDHALKGVWKPYRECHIKPDILLVYLVKDDELILLRLGSHSELF
>NZ_CP048600.1|WP_163498200.1|1327056_1327308_+|hypothetical-protein
MPNTTNKDYTKYSQKQLFNLINQLEQKISQAFDDKRGCCLGHEIPNLETQQAMREALNGENLEVIGDFSAWANERKKEVNAEN
>NZ_CP048600.1|WP_163498201.1|1327905_1328169_+|hypothetical-protein
MGANFYRELGKLEKQLAKYQSKVLEIKTQMKEIKKQYSQAKKDENLASKYIPNDELKKDLLDIDNPNTTENFKPKNASEIWQFALNS
>NZ_CP048600.1|WP_163498202.1|1328177_1328480_+|type-II-toxin-antitoxin-system-YafQ-family-toxin
MLEIELKKKFTKDLKEHILNQKIELEVFDLVVESLRNQIPLDEKFKDHALSGTHKGCRECHIKPNVLLVYRVKNNVLTLVRLGSHSELFCKPPTPLITLK
>NZ_CP048600.1|WP_001135604.1|1328558_1329083_-|acyl-CoA-thioesterase
MPQIQSSHSNHFDFTIDTADRTKLLMSYLVVPTTANFNNVMHGGELLNLLDKVAYVCSTRYCAKGTVTLSVDGVTFKYPIPVGNLLTFLASINYVGNTSCEVGIKVLSEDIKTREITHTNSCYFTMVAVENGKPTPMPKYEPKTEVEIRRYEGALKRKEMRTRGYLKSGKHENI
>NZ_CP048600.1|WP_163498203.1|1329222_1330071_+|SDR-family-oxidoreductase
MGVGEKKESQKVAVITGASSGIGLECALMLLDQGYKVYALSRHTTLCVALNHALCERVDIDVSDSNALKEVFLSISAKEDHCDVLINSAGYGVFGSVEDTPIEEVKKQFSVNFFALCEVVQLCLPLLKNKPHSKIFNLSSIAGRVSMLFLGHYSASKHALEAYSDALRLELKPFNVQVCLIEPGPVKSNWEKTAFENDERKDSVYALEVNAAKSFYSGVYQKALNAKEVAQKIVFLSMSQKIKARYLIGLKTQLLLALYQILPSSWYDSLFRLIVLGRKRDA
>NZ_CP048600.1|WP_000921470.1|1330063_1331044_+|iron-ABC-transporter-permease
MLKTYHIALACVILAVVVLLFGGESLSLEEWQEVYLNVKNHFLHNEELSSLSVIILEIRLPRVILALLVGASLSGSGVVMQTIFRNPLVDPFLLGISSGAMLGVAMAIAVVESNIAILAFFGAILASLAVLAMNRVLGNSVLSLVLSGVVLSAFLSALAGAIKFFVIPQKAQAIVVWLLGSLSLSSYKDCLIAFIGLSLGFIPLFLLRWRINLLSLSDAQSLSLGINPVLLRSLCLVCVSVASALAVSVSGTIGWIGLVIPHVARLFFGANLQKLLLSSLLMGAFFLLLADVVAKTITPYDLPVGIATSVLGAPFFLWLLFRTRGV
>NZ_CP048600.1|WP_163498204.1|1331043_1331811_+|ABC-transporter-ATP-binding-protein
MVLEVKNLSFKYSQKLILDKLSFSVPKNSITSILAPNGSGKTTLLKCLLGLLKPLEETEIKACNKDILPLKPYEKAKLIAYIPQVEYYAFNFSVLDFVLMGKATHLNLFAMPKAKHIKEATSVLECLDLESLKDQGINDLSGGQRQMVLLARSLLQRTPLLLLDEPTSALDLKNQALFFDAIKDEMKKRELSVLVNIHDPNLVARHSTHVVMLKDKKLFLQASTPIAMTSHNLSALYDTPLEAIWHDDKLVVYAL
>NZ_CP048600.1|WP_163498395.1|1331932_1332997_+|glycosyltransferase-family-8-protein
MVAFDNNYCIPAGVSLYSMLSSCAQERDGVKLFYQIHCLVDSLSAENAEKLKRTMSPFSAFSGIEFCDISKNDAYPFTLVSQLFLRLNPFAKKRFSKMILCRLLLASIFPQYEKIIMFDVDTLFVGDISEGFFTPMDGAYFGATKEDLSLINIHSANDLFVSRLNWSRGMGVKLNHKSLTFQEVGILYENPFNAGFMLVNLALWRESHLEEKLIDFFKTRDEGLLLPEQDLFVLVCQGRILEMPCKYNVHPRMVGTRMIPKKSDACMLHFYADEKPWKHFGYPYSKEWHQVAFKTSFESLVFENLVGKIETFTELNDHNKKSFFEFLNTRLNKKFLIQYVLFKIFKKLESFCLR

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Crispr_ID: NZ_CP048600_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048600_4

1543375-1543573

Orphan

I-B

Consensus_repeat	Method
TGTTAAAATTATAAGTCCCTTGATTGAA	CRT
TTAAAATTATAAGTCCCTTGATTGAA	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_CP048600_4

>merge|NZ_CP048600|4|1543375-1543573|CRT,CRISPRCasFinder
TGTTAAAATTATAAGTCCCTTGATTGAAGGTGTCGTTATTAAAGCTTACGCTGTCATTAAAATTATAAGTCCCTTGATTGAAACTACTGTTTTCAAAAGTGGATTGGGCGCTGTTAAAGTGATAAGTCCCTTGATTGAAACTACTATTACCAAAGCTTGAACTTGCACTATTGCTAAAATTATAAGTGCCTTGATTGAA

>NZ_CP048600|4|1|1543375-1543573|CRT
TGTTAAAATTATAAGTCCCTTGATTGAA	GGTGTCGTTATTAAAGCTTACGCTGT
CATTAAAATTATAAGTCCCTTGATTGAA	ACTACTGTTTTCAAAAGTGGATTGGGCGC
TGTTAAAGTGATAAGTCCCTTGATTGAA	ACTACTATTACCAAAGCTTGAACTTGCACTAT
TGCTAAAATTATAAGTGCCTTGATTGAA

>NZ_CP048600|4|4|1543377-1543573|CRISPRCasFinder
TTAAAATTATAAGTCCCTTGATTGAA	GGTGTCGTTATTAAAGCTTACGCTGTCA
TTAAAATTATAAGTCCCTTGATTGAA	ACTACTGTTTTCAAAAGTGGATTGGGCGCTG
TTAAAGTGATAAGTCCCTTGATTGAA	ACTACTATTACCAAAGCTTGAACTTGCACTATTG
CTAAAATTATAAGTGCCTTGATTGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048600.1\|WP_163498316.1\|1546367_1549625_+\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
NZ_CP048600.1\|WP_163498313.1\|1535973_1536795_-\|glycosyltransferase-family-25-protein	unknown	unknown	gnl\|CDD\|225843
NZ_CP048600.1\|WP_163498323.1\|1561545_1562691_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|223897
NZ_CP048600.1\|WP_163498315.1\|1544433_1545432_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|273675
NZ_CP048600.1\|WP_097722773.1\|1530916_1531507_+\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|234620
NZ_CP048600.1\|WP_078262178.1\|1529143_1530034_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048600.1\|WP_163498319.1\|1553095_1554640_+\|outer-membrane-beta-barrel-protein-HofG	unknown	unknown	gnl\|CDD\|334957
NZ_CP048600.1\|WP_163498317.1\|1549629_1550061_+\|Sua5-YciO-YrdC-YwlC-family-protein	unknown	unknown	gnl\|CDD\|223088
NZ_CP048600.1\|WP_163498318.1\|1550318_1552766_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|224544
NZ_CP048600.1\|WP_163498322.1\|1559509_1561537_-\|ATP-dependent-helicase	unknown	unknown	gnl\|CDD\|223288
NZ_CP048600.1\|WP_163498320.1\|1555152_1556748_-\|Hop-family-adhesin-AlpB	unknown	unknown	gnl\|CDD\|280099
NZ_CP048600.1\|WP_097722772.1\|1530126_1530915_+\|spermidine-synthase	unknown	unknown	gnl\|CDD\|134311
NZ_CP048600.1\|WP_001029085.1\|1527254_1527539_-\|HU-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|223847
NZ_CP048600.1\|WP_163498311.1\|1531565_1532927_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	unknown	unknown	gnl\|CDD\|234572
NZ_CP048600.1\|WP_000401209.1\|1534503_1535184_+\|F0F1-ATP-synthase-subunit-A	unknown	unknown	gnl\|CDD\|223433
NZ_CP048600.1\|WP_163498310.1\|1527678_1529067_-\|ribosome-biogenesis-GTPase-Der	unknown	unknown	gnl\|CDD\|234628
NZ_CP048600.1\|WP_000790555.1\|1535507_1535756_+\|RNA-binding-protein	unknown	unknown	gnl\|CDD\|240845
NZ_CP048600.1\|WP_050825390.1\|1545576_1546269_+\|Bax-inhibitor-1/YccA-family-protein	unknown	unknown	gnl\|CDD\|198414
NZ_CP048600.1\|WP_163498321.1\|1556769_1558314_-\|Hop-family-adhesin-AlpA	unknown	unknown	gnl\|CDD\|280099
NZ_CP048600.1\|WP_163498312.1\|1532936_1534382_+\|IMP-dehydrogenase	unknown	unknown	gnl\|CDD\|235507

Protein	Function_ID	Function_description	E-value
NZ_CP048600.1\|WP_163498316.1\|1546367_1549625_+\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NZ_CP048600.1\|WP_163498313.1\|1535973_1536795_-\|glycosyltransferase-family-25-protein	gnl\|CDD\|225843	COG3306, COG3306, Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane].	3.61354e-53
NZ_CP048600.1\|WP_163498323.1\|1561545_1562691_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|223897	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair].	4.14254e-50
NZ_CP048600.1\|WP_163498312.1\|1532936_1534382_+\|IMP-dehydrogenase	gnl\|CDD\|235507	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed.	0
NZ_CP048600.1\|WP_097722773.1\|1530916_1531507_+\|dephospho-CoA-kinase	gnl\|CDD\|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	5.35203e-81
NZ_CP048600.1\|WP_163498319.1\|1553095_1554640_+\|outer-membrane-beta-barrel-protein-HofG	gnl\|CDD\|334957	pfam02521, HP_OMP_2, Putative outer membrane protein. This family consists of putative outer membrane proteins from Helicobacter pylori (campylobacter pylori).	2.63868e-179
NZ_CP048600.1\|WP_163498317.1\|1549629_1550061_+\|Sua5-YciO-YrdC-YwlC-family-protein	gnl\|CDD\|223088	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis].	3.03497e-05
NZ_CP048600.1\|WP_163498318.1\|1550318_1552766_+\|TonB-dependent-receptor	gnl\|CDD\|224544	COG1629, CirA, Outer membrane receptor proteins, mostly Fe transport [Inorganic ion transport and metabolism].	5.47098e-34
NZ_CP048600.1\|WP_163498315.1\|1544433_1545432_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|273675	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I. This model represents glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilize NAD (EC 1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In some species, NAD- and NADP- utilizing forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively. Two Pfam models cover the two functional domains of this protein; pfam00044 represents the N-terminal NAD(P)-binding domain and pfam02800 represents the C-terminal catalytic domain. An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine. This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria. This enzyme is described by TIGR001532. These sequences generally score between trusted and noise to this GAPDH model due to the close evolutionary relationship. There exists the possiblity that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to posess a limited E4PD activity as well as a robust GAPDH activity). There are a great number of sequences in the databases which score between trusted and noise to this model, nearly all of them due to fragmentary sequences. It seems that study of this gene has been carried out in many species utilizing PCR probes which exclude the extreme ends of the consenses used to define this model. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model. [Energy metabolism, Glycolysis/gluconeogenesis].	6.51289e-158
NZ_CP048600.1\|WP_163498320.1\|1555152_1556748_-\|Hop-family-adhesin-AlpB	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	7.89657e-54
NZ_CP048600.1\|WP_097722772.1\|1530126_1530915_+\|spermidine-synthase	gnl\|CDD\|134311	PRK00536, speE, spermidine synthase; Provisional.	1.99513e-157
NZ_CP048600.1\|WP_001029085.1\|1527254_1527539_-\|HU-family-DNA-binding-protein	gnl\|CDD\|223847	COG0776, HimA, Bacterial nucleoid DNA-binding protein [DNA replication, recombination, and repair].	2.838e-24
NZ_CP048600.1\|WP_163498311.1\|1531565_1532927_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	gnl\|CDD\|234572	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA.	0
NZ_CP048600.1\|WP_000401209.1\|1534503_1535184_+\|F0F1-ATP-synthase-subunit-A	gnl\|CDD\|223433	COG0356, AtpB, F0F1-type ATP synthase, subunit a [Energy production and conversion].	8.81353e-60
NZ_CP048600.1\|WP_163498310.1\|1527678_1529067_-\|ribosome-biogenesis-GTPase-Der	gnl\|CDD\|234628	PRK00093, PRK00093, GTP-binding protein Der; Reviewed.	0
NZ_CP048600.1\|WP_000790555.1\|1535507_1535756_+\|RNA-binding-protein	gnl\|CDD\|240845	cd12399, RRM_HP0827_like, RNA recognition motif in Helicobacter pylori HP0827 protein and similar proteins. This subfamily corresponds to the RRM of H. pylori HP0827, a putative ssDNA-binding protein 12rnp2 precursor, containing one RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). The ssDNA binding may be important in activation of HP0827. .	5.18591e-37
NZ_CP048600.1\|WP_163498322.1\|1559509_1561537_-\|ATP-dependent-helicase	gnl\|CDD\|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	7.02888e-132
NZ_CP048600.1\|WP_163498321.1\|1556769_1558314_-\|Hop-family-adhesin-AlpA	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	2.35493e-54
NZ_CP048600.1\|WP_050825390.1\|1545576_1546269_+\|Bax-inhibitor-1/YccA-family-protein	gnl\|CDD\|198414	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins. This family is comprised of bacterial relatives of the mammalian members of the BAX inhibitor (BI)-1 like family of small transmembrane proteins, which have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well-characterized oncogene, or by inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. In plants, BI-1 like proteins play a role in pathogen resistance. A characterized prokaryotic member, Escherichia coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.	2.21636e-52

>NZ_CP048600.1|WP_163498313.1|1535973_1536795_-|glycosyltransferase-family-25-protein
MRVFIISLNQKVCDKFGLVFRDTTTLLNSINATHHQAQIFDAIYSKTFEGGLHPLVKKHLHPYFITQNIKGMGIATNLISEVSKFYYALKYHAKFMSLGELGCYASHYSLWEKCIELDEPICILEDDITLKEDFKEGLDFLEKHIHELGYARLMHLLYDASVKSEPLNHKNQEIQERVGIIKAYSHGVGTQGYVITPKIAKVFLKHSRKWVVPVDTIMDATFIHGVKNLVLQPFVIADDEQISTIARKEEPYSPKIALMRELHFKFLKWWQFV
>NZ_CP048600.1|WP_000790555.1|1535507_1535756_+|RNA-binding-protein
MKNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEEGVREAIAKLDNTDFMGRTIRVTEANPKKS
>NZ_CP048600.1|WP_000401209.1|1534503_1535184_+|F0F1-ATP-synthase-subunit-A
MEHRVFTIANFFSSNHDFITGFFVVLTAVLMFFISLGASRKMQMVPMGLQNVYESIISAILSVAKDIIGEELARKYFPLAGTIALYVFFSNMIGIIPGFESPTASWSFTLVLALIVFFYYHFEGIRVQGFFKYFAHFAGPVKWLAPFMFPIEIISHFSRIVSLSFRLFGNIKGDDMFLLIMLLLVPWAVPVAPFMVLFFMGILQAFVFMILTYVYLAGAVLTDEGH
>NZ_CP048600.1|WP_163498312.1|1532936_1534382_+|IMP-dehydrogenase
MRILQRALTFEDVLMVPRKSSVLPKDVSLKSRLTKNIGLNIPFISAAMDTVTEHKTAIAMARLGGIGIVHKNMDIQTQVKEITKVKKSESGVINDPIFIQAHRTLADAKVITDNYKISGVPVVDDKGLLIGILTNRDVRFETDLSKKVGDVMTKMPLVTAHVGISLDEASDLMHKHKIEKLPIVDKDNVLKGLITIKDIQKRIEYPEANKDDFGRLRVGAAIGVGQLDRAEMLVKAGVDALVLDSAHGHSANILHTLEEIKKSLVVDVIVGNVVTKEATSDLISAGADAIKVGIGPGSICTTRIVAGVGMPQVSAIDNCVEVASKFDIPVIADGGIRYSGDVAKALALGASSVMIGSLLAGTEESPGDFMIYQGRQYKSYRGMGSIGAMTKGSSDRYFQEGVASEKLVPEGIEGRVPYRGKVSDMIFQLVGGVRSSMGYQGAKNILKLYQNAEFVEITSAGLKESHVHGVDITKEAPNYYG
>NZ_CP048600.1|WP_163498311.1|1531565_1532927_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA
MITLKQALSLSQDELETLKNEIDAKVRASDLNAYIKAPSLNGASAKGVPILIKDNISVKGWEITCSSKILEGYVAPYHASAIENLHQNSMAGFGLSNMDEFAMGSTTESSCYGITKNPRDKNRVPGGSSGGSAAAVAGGLAVAALGSDTGGSIRQPASYCGCVGLKPTYGRVSRYGLIAYCSSFDQIGPITQNVEDASILFDAISGYDSKDSTSANLKPTQTFKNLNRDKRFKIAILRDHIKDASNEVQLAYENTLKALKEMGHEIVEKKMLDSHYQISIYYIISMAEASSNLARFDGVRYGRRAQNVKDLKELYLKSRSEGFGDEVKRRIMLGNFVLSSGYYDAYYLKAQQMRLMIKEQYNKIFEEVDLIFTPVAPTTAHLFNYHASPLEMYLSDIYTIGANLSGLPALSLPVAKDPLGLPIGMQFIAKAFDEQSLLDVSYALEQELDLKLD
>NZ_CP048600.1|WP_097722773.1|1530916_1531507_+|dephospho-CoA-kinase
MILKNAIALTGGIGTGKSTTLKILESQGYEILDADKIAHQLLQEHRLEIAQHFGSDILEKDILNRKKLGAIVFKDPNELKWLEDFLHPLIRECMLKKVYELEKNHQAYFLDIPLFFEVGGKKRYPVSKVVLIYAPRVLQIERLLERDKLKEAEILQRLACQMDIEQKRAMSDYIIDNSSSLKDLNKQVERFLKTLL
>NZ_CP048600.1|WP_097722772.1|1530126_1530915_+|spermidine-synthase
MWITQEITPYLRKEYTIEAKLLDVRSEHNILEIFKSKDFGEIAMLNRQLLFKNFLHIESELLAHMGGCTKKELREVLIVDGFDLELAHQLFKYDTRIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLILCLQEPDTHKVDGLKRMLKEDGVLISVAKHPLLEHVSMQNALKNLGDFFPITIPFVAPLRILSNKGYIYASFKTHPLKDLMTPKIEALKSVRYYNEDIHRAAFALPKNLQEVFKDNIKS
>NZ_CP048600.1|WP_078262178.1|1529143_1530034_+|hypothetical-protein
MFLVKKIGVVIMILVCFLACSQESFIKMQKKAQEQENDGSKRPSYVDSDYEVFSETIFLQNMVYQPIEERNAFFQLTKDEDNSFNPENSVILLNEPSDNNEKNPPLYPNESDNNTNNANNDIKNPFLYKPKRKTKNPKLIEYSQQDFYPLKNGDIIMSKEGDQWLIEIQSKALKRFLENKNEKDRQIQTFTFNDTKTQIAQFKGKISSYVYTTNDSDLSLRPFYESFLLEKKSDNVYTIENKALDTMEISKCQMVLKKHSTDKLDSQHKAISIDLDFKKERFKSDTELFLECLKES
>NZ_CP048600.1|WP_163498310.1|1527678_1529067_-|ribosome-biogenesis-GTPase-Der
MNTSHKTLKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLNALSLNQIIEQDLDADILESLETPNNALEETKEEEIIQVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHRGKILGIEKYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGIILILNKWDIRYAPYEEIMATLKRKFRFLEYAPVITTSCLKARHIDEIKHKIIEVYECFSKRIPTSLLNSVIFQATQKHPLPSDGGKLVKVYYATQFATKPPQISLIMNRPKALHFSYKRYLINTLRKEFNFLGTPLILNAKDKKSAQQN
>NZ_CP048600.1|WP_001029085.1|1527254_1527539_-|HU-family-DNA-binding-protein
MNKAEFIDLVKEAGKYNSKREAEEAISAFTLAVETALSKGESVELVGFGKFETAEQKGKEGKVPGSDKTYKTEDKRVPKFKPGKILKQKVEEGK
>NZ_CP048600.1|WP_163498315.1|1544433_1545432_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MKIFINGFGRIGRCVLRAILERNDTNPDLEVVGINDPANWEILAYLLEHDSAHGLLNKETRYSNGKLIIGSLEIPVFNSIKDLKGVGVIIECSGKFLEPKTLENYLLLGAKKVLLSAPFMGEYNEKQYPTLVYGVNHFLYQNQAIVSNASCTTNAIAPICAILDKAFSIKEGMLTTIHSYTSDQKLIDLAHPLDKRRSRAAASNIIPTTTKAALALHKVLPNLKNKMHGHSVRVPSLDVSMIDLSLFLEKKALKESINDLLITASKGTLKGVLEIDLKERVSSDFISNPNSVIIAPDLTFTLENMVKIMGWYDNEWGYSNRLVDMAQFMYHY
>NZ_CP048600.1|WP_050825390.1|1545576_1546269_+|Bax-inhibitor-1/YccA-family-protein
MALYDRANSRNAYAEDSLLHESELVSFVKTTYKFFAGSLLLATIGALLGLMNFQAVVQYKWVFFIAEIVAFFGLMFSKSKPGLNLFMLFAFTSLSGVTLVPLLGMVIAKAGLGAVWQALGMTTIVFGLMSVYALKTKNDLANMGKMLFIALIVVVVCSLINLFLGSPMFQVVIAGASAILFSLYIAYDTQNIVKGMYDSPIDAAVSLYLDFLNVFISILQIIGIFSDRDK
>NZ_CP048600.1|WP_163498316.1|1546367_1549625_+|carbamoyl-phosphate-synthase-large-subunit
MPKRTDISNILLIGSGPIVIGQACEFDYSGTQSCKTLKSLGYRVILINSNPATVMTDPEFSHQTYIQPITPENIAAIIKKEKIDAILPTMGGQTALNAVMQMHQRGMLEGVELLGAKIEAIKKGEDRQAFKEAMLKIGMDLPKGRYAYSELEALEAVNEIGFPAIIRASFTLAGGGSGVAYNIEEFQELAKNALDASPINEILIEESLLGWKEYEMEVIRDSKDNCIIVCCIENIDPMGVHTGDSITIAPSLTLTDKEYQRMRDASFAILREIGVDTGGSNVQFAIHPETLRMVVIEMNPRVSRSSALASKATGFPIAKVATMLAVGFSLDEIKNDITNTPASFEPSLDYIVVKIPRFAFEKFAGVSSTLGTSMKSIGEVMAIGGNFLEALQKALCSLENNWLGFESLSKDLEAIKKEIRRPNPKRLLYIADAFRLGVSVDEVFELCQIDRWFLSQIQKLVKAEEGINSSVLTDAKKLRGLKNLGFSDARIAAKIKENENLEVSPFEVELARSNLQIAPNFEEVDTCAAEFLSLTPYLYSTYAPNPLPSIENKQEKQEKKILIIGSGPNRIGQGIEFDYCCVHASFALKDLNVKSVMLNCNPETVSTDYDTSDALYFEPIHFECVKSIIQRERVDGIIVHFGGQTPLKLAKDLAKMQASIIGTPFKVIDIAEDREKFSLFLKELDIKQPENGMAKSVDEAYSIANMIGFPIIVRPSYVLGGQHMQILENIEELRHYLESVTHSLEISPKNPLLIDKFLEKAVELDVDAICDKKEVYIAGILQHIEEAGIHSGDSACFIPSTLSPEILDEIERVSAKIALHLGVVGLLNIQFAVYQNSLYLIEVNPRASRTVPFLSKALGVPLAKVATRVMVLEDLKEALKFYDKKNIVGYSNGVYKPKMPHFVALKEAVFPFNKLYGSDLILGPEMKSTGEVMGIAKSLGLAFFKAQTACFNPIKNKGLIFVSIKDKDKEEACVLMKRLVQLGFELCATEGTHKALEKAGVKSLKVLKISEGRPNIMDLMMNGEISMAINTSDHKSQDDAKLIRTSVLKNHVSYFTTLSAIEVLLLALEESSQKDELLALQDYLK
>NZ_CP048600.1|WP_163498317.1|1549629_1550061_+|Sua5-YciO-YrdC-YwlC-family-protein
MALVYLVQSDTTIGLLSKDSEKLNALKGRPKNQSVLIESADFSILKSLVRVPNAFKSLIRRSAKTTFIYPNSKAVRVVRGRHGDFLKRFKTLYSTSANLTQCAYDKEIASNLADVIVSDERGLFESASSKIFRLYKHKKVRVR
>NZ_CP048600.1|WP_163498318.1|1550318_1552766_+|TonB-dependent-receptor
MNDKRFRKYCSFSVVLTLLGMFELEAKEEEKEEKKTERKKDKDKNAQHTLGKVTTQAAKIFNYNNQTTISSKELERRQANQISDMFRRNPNINVGGGAVIAQKIYVRGIEDRLARVTVDGAAQMGASYGHQGNTIIDPGMLKSVVVTKGAAQASAGPMALIGAIKMETRSASDFIPKGKDYAISGAATFLTNFGDRETIMGAYRNNHFDVLLYYTHQNIFYYRDGDNAMKNLFDPKADNKVTASPSEQNNVMAKINGYLSDRDTLTLSYNMTRDNANRPLRANFTGTFLPYSCGDFNAFPNEKNPSDCLFENDASLFKTYSVNLVHNVSLNYEREGGSRFGDPKLKINGYTSIRNVQIDPLFRPNDIAAIIPFTPNPQLSQGEQNQCVAQGGIYDATKQTCSITFKSLGGGSVVANKNLFIINSGFNANVIHTIDHKNDNLFEYGLNYQNLTTFDKAIPNSELVKPGDAPDACLRVTGPNDPNMNGRCQRNGATANVVGVYAQANYTLHPMVTLGAGTRYDVYTLVDKDWQLHITQGFSPSAALNVSPLENLNFRLSYAYVTRGPMPGGLVWMRQDNLRYNRNLKPEIGQNAEFNTEYSSQYFDFRAAGFVQLISNYINQFSSTLFVTNLPAQDIIYVPGYEVSGTAKYKGFSLGLSVARSWPSLRGRLIADVYELAATTGNVFILTASYTIPRTGLSITWLSRFVTDLSYCSYSPYRNGPTDIDRRPSNCPKTPGIFHVHKPGYGVSSFFITYKPAYKKLKGLSLNAVFNNVFNQQYIDQASPVMSPDEPNQDKYARGMAEPGFNARFEISYKF
>NZ_CP048600.1|WP_163498319.1|1553095_1554640_+|outer-membrane-beta-barrel-protein-HofG
MKQEKYFLTSSLSLLSFLLCPVEAFDYRFSGRVENFSKIGFNNSQINTKKGIYPTESFIDIVTLVQVKVNLLPKGIENHRLSVSLGGAIAAIPYDKTKYYINQANGKVFGSIVENFIGGYHGYFFNKYLGPAYAGTSQSASYHARPYVVDTAFLRYDYKDVFGFKAGRYEANIDFMSGSNQGWEVYYQPYKTETQRLRFWWWSSFGRGLAFNSWIYEFFATVPYLKKGGNPNNSDDFINYGWHGITTTYSYKGLDAQFFYYFAPKTYNAPGFKLVYDTNRNFENVGFRSQSMIMTTFPLYYRGWYNPETNTYSLEDSTPHGSLLGRNGVTLNIRQVFWWDNFNWSIGFYNTFGNSDAFLGSHTMPRGNNTSYISNEISVTTRHAGMIGYDFWDNTAYDGLADAITNANTFTFYTSVGGIHKRFAWHVFGRVSHANKNALGQVGRANEYSLQFNASYAFTESVLLNFRITYYGARINKGYQAGYFGAPKFNNPDGDFSANYQDRSYMMTNLTLKF
>NZ_CP048600.1|WP_163498320.1|1555152_1556748_-|Hop-family-adhesin-AlpB
MKQNLKPFKMIKENLMTQSQKVRFLAPLSLALSLSFNPVGAEEDGGFMTFGYELGQVVQQVKNPGKIKAEELAGLLNSNTTNNTNINIAGTGGNVAGTLGNLFMNQLGNLIDLYPTLNTTSIQQCGATNSGSSGGAATAATATTSNSPCFQGNLALYKEMVSSIKTLSQDISKNIFQGNNNTTSANLSNQLSELNTVSVYLAYMNSFLNANNQAGGIFQNHTNQAYGNGVTAQQIAYVLKQASITMGPSGNGGAAGAFLDAALAQHVFNSANAGNDLSAKEFTSLVQNIVNTSQNALTLANNANISNSTGYQVSYGGNIDQARSTQLLNNTTNTLAKVSALNNELKANPWLGNFAAGNSSQVNAFNGFITKIGYKQFFGENKNVGLRYYGFFSYNGAGVGNGPTYNQVNLLTYGVGTDVLYNVFSRSFGSRSLNAGFFGGIQLAGDTYISTLRNSPQLASRPTATKFQFLFDVGLRMNFGILKKDLKSHNQHSIEIGVQIPTIYNTYYKAGGAEVKYFRPYSVYWVYGYAF
>NZ_CP048600.1|WP_163498321.1|1556769_1558314_-|Hop-family-adhesin-AlpA
MMKKNRTLFLSLALCASISYAEDDGGFFTVGYQLGQVMQDVQNPGGTKRDELARELNADVTNNILNNNTGGNVAGALSNAFSQYLYSLLGAYPTKLNSNDVSANALLSGAVGSGTCAAAGTAGSSSLNTQSACTAAGYYWLPSLTDRILSTIGSQTNYGTNTNFPNMQQQLTYLNAGNVFFNAMNKALEKNGTSGTSGATGQNGQTYSQQAIQYLQGQQNILNNAANLLKQDELLLEAFNSAVAANIGNKEFNSAAFTGLVQGIIDQSQAVYNELTKNTISGSAVNNAGIDSNQANAVQGRASQLPNALYNAQVTLDKINALNNQVRSMPYLPQFRAGNSRSTNILNGFYTKVGYKQFFGKKRNIGLRYYGFFSYNGASVGFRSTQNNVGLYTYGVGTDVLYNIFSRSYQNRSVDMGFFSGIQLAGETIQSTLRDDPNVKLHGKVNNTHFQFLFDFGMRMNFGKLDGKSNRHNQHTVEFGVVVPTIYNTYYKSAGTTVKYFRPYSVYWSYGYSF
>NZ_CP048600.1|WP_163498322.1|1559509_1561537_-|ATP-dependent-helicase
MLETLQLNPEQLKAASALQGYNLIIASAGTGKTSTIVGRILHLLNNGIKPEEILLLTFTNKASNEMIARVAKYSKLSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELRKLLESIVDTKNAIDDDKKPYTSQHLYALYSLYTNALKQEDFSAWLSHKNPEHMQYAAFYENILEEFENTKKKHDYIDYNDLLLLFKKAMLERPSPYKEVLCDEFQDTNPLQESILDAINPPSLFCVGDYDQSIYAFNGADISIISNFTQKYKNARVFTLTKNYRSSKEILDLANQVIQHNQRIYPKNLEVVKSGKFNKPTLLNYNDNIAQCQDIAKRIVMRKDFKEVAVIFRNNASADQLEAALRSHNVPSKRKGSASFFESKEVALALDICALLFNPKDIMAAIHILSYISDIGSNTAKDIHEALMLLGNGDLKSALIQPNQEAKIYTKKKEITSMGLFEEIFALENSSRFNSVIDKAFYSHPVLMHPKISLNGAKTLSDFFILYTKAPIHSPSALIKHILESAFFQTFKTRLLKERSKNKDGSYNEFKKLQAQKRFNEKMDLLSSLAKNYQNLGRFLNGTLIGSNEATQGEGVNLLSVHASKGLEFKDVYIIDLMEGRFPNHKLMNTGGGIEEERRLFYVAITRAKENLWLSYAKNELRENAKPKEHKPSVFLYEAGLLKPDSK
>NZ_CP048600.1|WP_163498323.1|1561545_1562691_-|class-I-SAM-dependent-methyltransferase
MENFLNNLDIKTLGQVFTPNNIVDFMLTLKQNQGSVLEPSAGDGSFLKRLKKAVGIEIDPKICPKNALCMDFFDYSLENQFDTIIGNPPYVKHKDIAPSTKEKLHYSLFDERSNLYLFFIEKAIKHLKPKGELIFITPRDFLKSTSSVKLNEWIYKEGTITHFFELGDQKIFPNAMPNCVIFRFCKGDFSRIANDGLQFVCKKGILYFLNQSYTQKLSEVFKVKVGAVSGCDRIFKNETYGNLEFVTSITKRTNVLEKMVFVNKPNDYLLQHKDSLMQRKIKKFNESNWFEWGRMHHISPKKRIYVNAKTRQKNPFFIHQCPNYDGSILALFPYDQNLDLQNLCDKLNAINWQELGFVCGGRFLFSQRSLENALLPKDFFN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP048600_1	1.2\|638968\|21\|NZ_CP048600\|CRISPRCasFinder	638968-638988	21	NZ_CP048600.1	638995-639015	0	1.0
NZ_CP048600_1	1.2\|638968\|21\|NZ_CP048600\|CRISPRCasFinder	638968-638988	21	NZ_CP048600.1	639004-639024	0	1.0

1. spacer 1.2|638968|21|NZ_CP048600|CRISPRCasFinder matches to position: 638995-639015, mismatch: 0, identity: 1.0

caagaaaaccaagaaaaccaa	CRISPR spacer
caagaaaaccaagaaaaccaa	Protospacer
*********************

2. spacer 1.2|638968|21|NZ_CP048600|CRISPRCasFinder matches to position: 639004-639024, mismatch: 0, identity: 1.0

caagaaaaccaagaaaaccaa	CRISPR spacer
caagaaaaccaagaaaaccaa	Protospacer
*********************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP048600_1	1.2\|638968\|21\|NZ_CP048600\|CRISPRCasFinder	638968-638988	21	NZ_CP019714	Lactobacillus plantarum strain Q7 plasmid unnamed2, complete sequence	1141-1161	1	0.952
NZ_CP048600_1	1.2\|638968\|21\|NZ_CP048600\|CRISPRCasFinder	638968-638988	21	NC_013789	Lactobacillus plantarum plasmid pXY3, complete sequence	2623-2643	1	0.952
NZ_CP048600_1	1.2\|638968\|21\|NZ_CP048600\|CRISPRCasFinder	638968-638988	21	MH648955	Microviridae sp. isolate ctbi001, complete genome	4319-4339	1	0.952
NZ_CP048600_1	1.2\|638968\|21\|NZ_CP048600\|CRISPRCasFinder	638968-638988	21	NC_031027	Bacillus phage SageFayge, complete genome	41954-41974	1	0.952
NZ_CP048600_1	1.2\|638968\|21\|NZ_CP048600\|CRISPRCasFinder	638968-638988	21	KJ489401	Bacillus phage Megatron, complete genome	41908-41928	1	0.952
NZ_CP048600_1	1.2\|638968\|21\|NZ_CP048600\|CRISPRCasFinder	638968-638988	21	NZ_CP023496	Staphylococcus simulans strain FDAARGOS_383 plasmid unnamed, complete sequence	92965-92985	1	0.952
NZ_CP048600_1	1.2\|638968\|21\|NZ_CP048600\|CRISPRCasFinder	638968-638988	21	MN855615	Siphoviridae sp. isolate 320, complete genome	5015-5035	1	0.952
NZ_CP048600_1	1.2\|638968\|21\|NZ_CP048600\|CRISPRCasFinder	638968-638988	21	JQ768459	Pseudomonas phage Lu11, complete genome	131078-131098	2	0.905
NZ_CP048600_4	4.2\|1543457\|29\|NZ_CP048600\|CRT	1543457-1543485	29	U88974	Streptococcus thermophilus temperate bacteriophage O1205, complete genome	23169-23197	7	0.759
NZ_CP048600_4	4.2\|1543457\|29\|NZ_CP048600\|CRT	1543457-1543485	29	NC_004303	Streptococcus phage O1205, complete genome	23169-23197	7	0.759
NZ_CP048600_4	4.3\|1543514\|32\|NZ_CP048600\|CRT	1543514-1543545	32	NZ_CP004873	Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB65, complete sequence	55473-55504	7	0.781
NZ_CP048600_4	4.3\|1543514\|32\|NZ_CP048600\|CRT	1543514-1543545	32	NZ_CP020005	Bacillus thuringiensis strain Bacillus thuringiensis L-7601 plasmid unnamed3, complete sequence	331651-331682	7	0.781
NZ_CP048600_4	4.3\|1543514\|32\|NZ_CP048600\|CRT	1543514-1543545	32	NZ_CP020005	Bacillus thuringiensis strain Bacillus thuringiensis L-7601 plasmid unnamed3, complete sequence	346078-346109	7	0.781
NZ_CP048600_4	4.3\|1543514\|32\|NZ_CP048600\|CRT	1543514-1543545	32	NZ_CP015177	Bacillus thuringiensis serovar alesti strain BGSC 4C1 plasmid pBMB267, complete sequence	230871-230902	7	0.781
NZ_CP048600_4	4.3\|1543514\|32\|NZ_CP048600\|CRT	1543514-1543545	32	NZ_CP015177	Bacillus thuringiensis serovar alesti strain BGSC 4C1 plasmid pBMB267, complete sequence	251799-251830	7	0.781
NZ_CP048600_4	4.3\|1543514\|32\|NZ_CP048600\|CRT	1543514-1543545	32	NZ_CP007613	Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB69, complete sequence	46943-46974	7	0.781
NZ_CP048600_4	4.3\|1543514\|32\|NZ_CP048600\|CRT	1543514-1543545	32	NZ_CP007614	Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB95, complete sequence	1301-1332	7	0.781
NZ_CP048600_4	4.3\|1543514\|32\|NZ_CP048600\|CRT	1543514-1543545	32	NZ_CP004868	Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB94, complete sequence	92696-92727	7	0.781
NZ_CP048600_4	4.3\|1543514\|32\|NZ_CP048600\|CRT	1543514-1543545	32	NZ_CP014853	Bacillus thuringiensis strain HD12 plasmid pHD120345, complete sequence	121800-121831	7	0.781
NZ_CP048600_4	4.3\|1543514\|32\|NZ_CP048600\|CRT	1543514-1543545	32	CP020758	Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-19, complete sequence	12392-12423	7	0.781
NZ_CP048600_4	4.3\|1543514\|32\|NZ_CP048600\|CRT	1543514-1543545	32	NC_020392	Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-63, complete sequence	7562-7593	7	0.781
NZ_CP048600_4	4.3\|1543514\|32\|NZ_CP048600\|CRT	1543514-1543545	32	NZ_CP010092	Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB126, complete sequence	112464-112495	7	0.781
NZ_CP048600_4	4.3\|1543514\|32\|NZ_CP048600\|CRT	1543514-1543545	32	NZ_CP021065	Bacillus thuringiensis strain ATCC 10792 plasmid poh4, complete sequence	35577-35608	7	0.781
NZ_CP048600_4	4.3\|1543514\|32\|NZ_CP048600\|CRT	1543514-1543545	32	NC_020249	Bacillus thuringiensis serovar kurstaki str. HD73 plasmid pHT73, complete sequence	5717-5748	7	0.781
NZ_CP048600_4	4.5\|1543457\|31\|NZ_CP048600\|CRISPRCasFinder	1543457-1543487	31	U88974	Streptococcus thermophilus temperate bacteriophage O1205, complete genome	23169-23199	8	0.742
NZ_CP048600_4	4.5\|1543457\|31\|NZ_CP048600\|CRISPRCasFinder	1543457-1543487	31	NC_004303	Streptococcus phage O1205, complete genome	23169-23199	8	0.742
NZ_CP048600_4	4.3\|1543514\|32\|NZ_CP048600\|CRT	1543514-1543545	32	NZ_CP020429	Streptococcus sp. FDAARGOS_192 plasmid unnamed1, complete sequence	189209-189240	9	0.719
NZ_CP048600_4	4.3\|1543514\|32\|NZ_CP048600\|CRT	1543514-1543545	32	MN480763	Streptococcus salivarius strain YU10 plasmid pSsal-YU10, complete sequence	22181-22212	9	0.719
NZ_CP048600_4	4.3\|1543514\|32\|NZ_CP048600\|CRT	1543514-1543545	32	MN480762	Streptococcus salivarius strain NU10 plasmid pSsal-NU10, complete sequence	134523-134554	10	0.688

1. spacer 1.2|638968|21|NZ_CP048600|CRISPRCasFinder matches to NZ_CP019714 (Lactobacillus plantarum strain Q7 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.952

caagaaaaccaagaaaaccaa	CRISPR spacer
caagaaaacccagaaaaccaa	Protospacer
********** **********

2. spacer 1.2|638968|21|NZ_CP048600|CRISPRCasFinder matches to NC_013789 (Lactobacillus plantarum plasmid pXY3, complete sequence) position: , mismatch: 1, identity: 0.952

caagaaaaccaagaaaaccaa	CRISPR spacer
caagaaaacccagaaaaccaa	Protospacer
********** **********

3. spacer 1.2|638968|21|NZ_CP048600|CRISPRCasFinder matches to MH648955 (Microviridae sp. isolate ctbi001, complete genome) position: , mismatch: 1, identity: 0.952

caagaaaaccaagaaaaccaa	CRISPR spacer
caagaaaaccaagaaaatcaa	Protospacer
*****************.***

4. spacer 1.2|638968|21|NZ_CP048600|CRISPRCasFinder matches to NC_031027 (Bacillus phage SageFayge, complete genome) position: , mismatch: 1, identity: 0.952

caagaaaaccaagaaaaccaa	CRISPR spacer
ctagaaaaccaagaaaaccaa	Protospacer
* *******************

5. spacer 1.2|638968|21|NZ_CP048600|CRISPRCasFinder matches to KJ489401 (Bacillus phage Megatron, complete genome) position: , mismatch: 1, identity: 0.952

caagaaaaccaagaaaaccaa	CRISPR spacer
ctagaaaaccaagaaaaccaa	Protospacer
* *******************

6. spacer 1.2|638968|21|NZ_CP048600|CRISPRCasFinder matches to NZ_CP023496 (Staphylococcus simulans strain FDAARGOS_383 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.952

caagaaaaccaagaaaaccaa	CRISPR spacer
caagaaaaccaacaaaaccaa	Protospacer
************ ********

7. spacer 1.2|638968|21|NZ_CP048600|CRISPRCasFinder matches to MN855615 (Siphoviridae sp. isolate 320, complete genome) position: , mismatch: 1, identity: 0.952

caagaaaaccaagaaaaccaa	CRISPR spacer
caagaaaacaaagaaaaccaa	Protospacer
********* ***********

8. spacer 1.2|638968|21|NZ_CP048600|CRISPRCasFinder matches to JQ768459 (Pseudomonas phage Lu11, complete genome) position: , mismatch: 2, identity: 0.905

caagaaaaccaagaaaaccaa	CRISPR spacer
caagaaaaccaagaaaaccgc	Protospacer
*******************.

9. spacer 4.2|1543457|29|NZ_CP048600|CRT matches to U88974 (Streptococcus thermophilus temperate bacteriophage O1205, complete genome) position: , mismatch: 7, identity: 0.759

actactgttttcaaaagtggattgggcgc	CRISPR spacer
ggatcagttttcaaaagtgttttgggcgc	Protospacer
.   * *************  ********

10. spacer 4.2|1543457|29|NZ_CP048600|CRT matches to NC_004303 (Streptococcus phage O1205, complete genome) position: , mismatch: 7, identity: 0.759

actactgttttcaaaagtggattgggcgc	CRISPR spacer
ggatcagttttcaaaagtgttttgggcgc	Protospacer
.   * *************  ********

11. spacer 4.3|1543514|32|NZ_CP048600|CRT matches to NZ_CP004873 (Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB65, complete sequence) position: , mismatch: 7, identity: 0.781

actactattaccaaagcttgaacttgcactat--	CRISPR spacer
actactattactaaagcctgaac--gaaacattg	Protospacer
***********.*****.*****  * * .**

12. spacer 4.3|1543514|32|NZ_CP048600|CRT matches to NZ_CP020005 (Bacillus thuringiensis strain Bacillus thuringiensis L-7601 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.781

actactattaccaaagcttgaacttgcactat--	CRISPR spacer
actactattactaaagcctgaac--gaaacattg	Protospacer
***********.*****.*****  * * .**

13. spacer 4.3|1543514|32|NZ_CP048600|CRT matches to NZ_CP020005 (Bacillus thuringiensis strain Bacillus thuringiensis L-7601 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.781

actactattaccaaagcttgaacttgcactat--	CRISPR spacer
actactattactaaagcctgaac--gaaacattg	Protospacer
***********.*****.*****  * * .**

14. spacer 4.3|1543514|32|NZ_CP048600|CRT matches to NZ_CP015177 (Bacillus thuringiensis serovar alesti strain BGSC 4C1 plasmid pBMB267, complete sequence) position: , mismatch: 7, identity: 0.781

actactattaccaaagcttgaacttgcactat--	CRISPR spacer
actactattactaaagcctgaac--gaaacattg	Protospacer
***********.*****.*****  * * .**

15. spacer 4.3|1543514|32|NZ_CP048600|CRT matches to NZ_CP015177 (Bacillus thuringiensis serovar alesti strain BGSC 4C1 plasmid pBMB267, complete sequence) position: , mismatch: 7, identity: 0.781

actactattaccaaagcttgaacttgcactat--	CRISPR spacer
actactattactaaagcctgaac--gaaacattg	Protospacer
***********.*****.*****  * * .**

16. spacer 4.3|1543514|32|NZ_CP048600|CRT matches to NZ_CP007613 (Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB69, complete sequence) position: , mismatch: 7, identity: 0.781

actactattaccaaagcttgaacttgcactat--	CRISPR spacer
actactattactaaagcctgaac--gaaacattg	Protospacer
***********.*****.*****  * * .**

17. spacer 4.3|1543514|32|NZ_CP048600|CRT matches to NZ_CP007614 (Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB95, complete sequence) position: , mismatch: 7, identity: 0.781

actactattaccaaagcttgaacttgcactat--	CRISPR spacer
actactattactaaagcctgaac--gaaacattg	Protospacer
***********.*****.*****  * * .**

18. spacer 4.3|1543514|32|NZ_CP048600|CRT matches to NZ_CP004868 (Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB94, complete sequence) position: , mismatch: 7, identity: 0.781

actactattaccaaagcttgaacttgcactat--	CRISPR spacer
actactattactaaagcctgaac--gaaacattg	Protospacer
***********.*****.*****  * * .**

19. spacer 4.3|1543514|32|NZ_CP048600|CRT matches to NZ_CP014853 (Bacillus thuringiensis strain HD12 plasmid pHD120345, complete sequence) position: , mismatch: 7, identity: 0.781

actactattaccaaagcttgaacttgcactat--	CRISPR spacer
actactattactaaagcctgaac--gaaacattg	Protospacer
***********.*****.*****  * * .**

20. spacer 4.3|1543514|32|NZ_CP048600|CRT matches to CP020758 (Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-19, complete sequence) position: , mismatch: 7, identity: 0.781

actactattaccaaagcttgaacttgcactat--	CRISPR spacer
actactattactaaagcctgaac--gaaacattg	Protospacer
***********.*****.*****  * * .**

21. spacer 4.3|1543514|32|NZ_CP048600|CRT matches to NC_020392 (Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-63, complete sequence) position: , mismatch: 7, identity: 0.781

actactattaccaaagcttgaacttgcactat--	CRISPR spacer
actactattactaaagcctgaac--gaaacattg	Protospacer
***********.*****.*****  * * .**

22. spacer 4.3|1543514|32|NZ_CP048600|CRT matches to NZ_CP010092 (Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB126, complete sequence) position: , mismatch: 7, identity: 0.781

actactattaccaaagcttgaacttgcactat--	CRISPR spacer
actactattactaaagcctgaac--gaaacattg	Protospacer
***********.*****.*****  * * .**

23. spacer 4.3|1543514|32|NZ_CP048600|CRT matches to NZ_CP021065 (Bacillus thuringiensis strain ATCC 10792 plasmid poh4, complete sequence) position: , mismatch: 7, identity: 0.781

actactattaccaaagcttgaacttgcactat--	CRISPR spacer
actactattactaaagcctgaac--gaaacattg	Protospacer
***********.*****.*****  * * .**

24. spacer 4.3|1543514|32|NZ_CP048600|CRT matches to NC_020249 (Bacillus thuringiensis serovar kurstaki str. HD73 plasmid pHT73, complete sequence) position: , mismatch: 7, identity: 0.781

actactattaccaaagcttgaacttgcactat--	CRISPR spacer
actactattactaaagcctgaac--gaaacattg	Protospacer
***********.*****.*****  * * .**

25. spacer 4.5|1543457|31|NZ_CP048600|CRISPRCasFinder matches to U88974 (Streptococcus thermophilus temperate bacteriophage O1205, complete genome) position: , mismatch: 8, identity: 0.742

actactgttttcaaaagtggattgggcgctg	CRISPR spacer
ggatcagttttcaaaagtgttttgggcgcta	Protospacer
.   * *************  *********.

26. spacer 4.5|1543457|31|NZ_CP048600|CRISPRCasFinder matches to NC_004303 (Streptococcus phage O1205, complete genome) position: , mismatch: 8, identity: 0.742

actactgttttcaaaagtggattgggcgctg	CRISPR spacer
ggatcagttttcaaaagtgttttgggcgcta	Protospacer
.   * *************  *********.

27. spacer 4.3|1543514|32|NZ_CP048600|CRT matches to NZ_CP020429 (Streptococcus sp. FDAARGOS_192 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

actactattaccaaagcttgaacttgcactat	CRISPR spacer
atctatattaccaaagcttgcactagcatttc	Protospacer
*..  *************** *** ***.* .

28. spacer 4.3|1543514|32|NZ_CP048600|CRT matches to MN480763 (Streptococcus salivarius strain YU10 plasmid pSsal-YU10, complete sequence) position: , mismatch: 9, identity: 0.719

actactattaccaaagcttgaacttgcactat	CRISPR spacer
atctatattaccaaagcttgcactagcatttc	Protospacer
*..  *************** *** ***.* .

29. spacer 4.3|1543514|32|NZ_CP048600|CRT matches to MN480762 (Streptococcus salivarius strain NU10 plasmid pSsal-NU10, complete sequence) position: , mismatch: 10, identity: 0.688

actactattaccaaagcttgaacttgcactat	CRISPR spacer
gtctatattaccaaagcttgcactagcatttc	Protospacer
...  *************** *** ***.* .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

232720 : 243679

uncultured_Caudovirales_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_163498355.1\|232720_235420_-	DNA polymerase I	A0A218MKQ4	uncultured_virus	1.4e-59	33.0
WP_163497688.1\|235490_236090_-	restriction endonuclease subunit R	A0A2H4J2Z3	uncultured_Caudovirales_phage	1.6e-24	51.3
WP_163497689.1\|236715_238755_-	N-6 DNA methylase	A0A2H4JBT5	uncultured_Caudovirales_phage	4.8e-209	57.7
WP_163497690.1\|238789_239365_-	ComF family protein	NA	NA	NA	NA
WP_163497691.1\|239352_239928_-	dTMP kinase	Q2XUX0	environmental_halophage	3.4e-11	39.4
WP_024118156.1\|239931_240405_-	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	3.3e-28	45.5
WP_000780095.1\|240404_240968_-	UbiX family flavin prenyltransferase	NA	NA	NA	NA
WP_163497692.1\|240977_241634_-	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA
WP_163497693.1\|241630_243679_-	DNA helicase UvrD	A7KV33	Bacillus_phage	1.2e-90	35.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP048600

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection