CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP048816	Caulobacter rhizosphaerae strain KCTC 52515 plasmid unnamed	0 crisprs	DEDDh	0	0	0	0
NZ_CP048815	Caulobacter rhizosphaerae strain KCTC 52515 chromosome, complete genome	1 crisprs	DEDDh,csa3,WYL,cas3,DinG	0	1	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP048815_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048815_1

1515397-1515514

Orphan

Consensus_repeat	Method
GGCGATGTCGTGGAAAGTGGAGGGATTCTGTTGGCAGGCTCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP048815_1

>merge|NZ_CP048815|1|1515397-1515514|CRISPRCasFinder
GGCGATGTCGTGGAAAGTGGAGGGATTCTGTTGGCAGGCTCCCGCATCCTTCAGCAAGGAAGAGGAGGGAGCCTTGGCGATGTCGTGGAAAGTGGAGGGATTCTGTTGGCAGGCTCCC

>NZ_CP048815|1|1|1515397-1515514|CRISPRCasFinder
GGCGATGTCGTGGAAAGTGGAGGGATTCTGTTGGCAGGCTCCC	GCATCCTTCAGCAAGGAAGAGGAGGGAGCCTT
GGCGATGTCGTGGAAAGTGGAGGGATTCTGTTGGCAGGCTCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048815.1\|WP_163229659.1\|1507076_1507820_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226425
NZ_CP048815.1\|WP_163229674.1\|1518522_1519374_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048815.1\|WP_056761874.1\|1510707_1511109_+\|RusA-family-crossover-junction-endodeoxyribonuclease	unknown	unknown	gnl\|CDD\|377564
NZ_CP048815.1\|WP_056761875.1\|1510381_1510705_+\|YbjQ-family-protein	unknown	unknown	gnl\|CDD\|376657
NZ_CP048815.1\|WP_163229673.1\|1515816_1516104_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371572
NZ_CP048815.1\|WP_163229665.1\|1509787_1510327_+\|DUF1697-domain-containing-protein	unknown	unknown	gnl\|CDD\|226319
NZ_CP048815.1\|WP_056761864.1\|1517503_1518166_+\|porin	unknown	unknown	gnl\|CDD\|235453
NZ_CP048815.1\|WP_056761862.1\|1518220_1518451_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048815.1\|WP_163229667.1\|1511152_1513360_-\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NZ_CP048815.1\|WP_056761869.1\|1514776_1515262_-\|stringent-starvation-protein-B	unknown	unknown	gnl\|CDD\|226335
NZ_CP048815.1\|WP_163229676.1\|1522991_1523192_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235099
NZ_CP048815.1\|WP_056761859.1\|1519376_1519925_-\|acetolactate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|183365
NZ_CP048815.1\|WP_056761857.1\|1520413_1522219_-\|acetolactate-synthase-3-large-subunit	unknown	unknown	gnl\|CDD\|236380
NZ_CP048815.1\|WP_082564764.1\|1519925_1520264_-\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|225383
NZ_CP048815.1\|WP_163229663.1\|1508265_1509657_-\|class-II-fumarate-hydratase	unknown	unknown	gnl\|CDD\|234779
NZ_CP048815.1\|WP_056762111.1\|1516472_1517381_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|377694
NZ_CP048815.1\|WP_163229661.1\|1507816_1508263_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379326
NZ_CP048815.1\|WP_163229671.1\|1514286_1514772_-\|hotdog-fold-thioesterase	unknown	unknown	gnl\|CDD\|239527
NZ_CP048815.1\|WP_056761855.1\|1522499_1522982_-\|CinA-family-protein	unknown	unknown	gnl\|CDD\|334938
NZ_CP048815.1\|WP_163229669.1\|1513478_1514279_-\|peptidase-C13	unknown	unknown	gnl\|CDD\|366741

Protein	Function_ID	Function_description	E-value
NZ_CP048815.1\|WP_163229659.1\|1507076_1507820_-\|AAA-family-ATPase	gnl\|CDD\|226425	COG3910, COG3910, Predicted ATPase [General function prediction only].	5.00337e-97
NZ_CP048815.1\|WP_056761857.1\|1520413_1522219_-\|acetolactate-synthase-3-large-subunit	gnl\|CDD\|236380	PRK09107, PRK09107, acetolactate synthase 3 catalytic subunit; Validated.	0
NZ_CP048815.1\|WP_056761874.1\|1510707_1511109_+\|RusA-family-crossover-junction-endodeoxyribonuclease	gnl\|CDD\|377564	pfam05866, RusA, Endodeoxyribonuclease RusA. This family consists of several bacterial and phage Holliday junction resolvase (RusA) like proteins. The RusA protein of Escherichia coli is an endonuclease that can resolve Holliday intermediates and correct the defects in genetic recombination and DNA repair associated with inactivation of RuvAB or RuvC.	2.80389e-14
NZ_CP048815.1\|WP_056761875.1\|1510381_1510705_+\|YbjQ-family-protein	gnl\|CDD\|376657	pfam01906, YbjQ_1, Putative heavy-metal-binding. From comparative structural analysis, this family is likely to be a heavy-metal binding domain. The domain oligomerizes as a pentamer. The domain is about 100 amino acids long and is found in prokaryotes.	1.64362e-38
NZ_CP048815.1\|WP_163229673.1\|1515816_1516104_-\|hypothetical-protein	gnl\|CDD\|371572	pfam11512, Atu4866, Agrobacterium tumefaciens protein Atu4866. Atu4866 is a protein with unknown function from Agrobacterium tumefaciens however the structure has been determined. Atu4866 adopts a streptavidin-like fold and has a beta-barrel/sandwich which is formed by eight antiparallel beta-strands. Atu4866 has a potential ligand-binding site where is has a stretch of conserved residues on the surface.	1.55889e-05
NZ_CP048815.1\|WP_163229665.1\|1509787_1510327_+\|DUF1697-domain-containing-protein	gnl\|CDD\|226319	COG3797, COG3797, Uncharacterized protein conserved in bacteria [Function unknown].	3.87683e-60
NZ_CP048815.1\|WP_056761864.1\|1517503_1518166_+\|porin	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	3.80105e-67
NZ_CP048815.1\|WP_163229667.1\|1511152_1513360_-\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	3.29477e-55
NZ_CP048815.1\|WP_056761869.1\|1514776_1515262_-\|stringent-starvation-protein-B	gnl\|CDD\|226335	COG3814, COG3814, Uncharacterized protein conserved in bacteria [Function unknown].	6.25758e-74
NZ_CP048815.1\|WP_163229676.1\|1522991_1523192_-\|hypothetical-protein	gnl\|CDD\|235099	PRK03011, PRK03011, butyrate kinase; Provisional.	0.00685321
NZ_CP048815.1\|WP_056761859.1\|1519376_1519925_-\|acetolactate-synthase-small-subunit	gnl\|CDD\|183365	PRK11895, ilvH, acetolactate synthase 3 regulatory subunit; Reviewed.	2.34543e-77
NZ_CP048815.1\|WP_082564764.1\|1519925_1520264_-\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|225383	COG2827, COG2827, Predicted endonuclease containing a URI domain [DNA replication, recombination, and repair].	1.44945e-22
NZ_CP048815.1\|WP_163229663.1\|1508265_1509657_-\|class-II-fumarate-hydratase	gnl\|CDD\|234779	PRK00485, fumC, fumarate hydratase; Reviewed.	0
NZ_CP048815.1\|WP_056762111.1\|1516472_1517381_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|377694	pfam06719, AraC_N, AraC-type transcriptional regulator N-terminus. This family represents the N-terminus of bacterial ARAC-type transcriptional regulators. In E. coli, these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein's DNA-binding domains. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating. All family members contain the pfam00165 domain.	3.0323e-59
NZ_CP048815.1\|WP_163229661.1\|1507816_1508263_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379326	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.67075e-11
NZ_CP048815.1\|WP_163229671.1\|1514286_1514772_-\|hotdog-fold-thioesterase	gnl\|CDD\|239527	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).	2.14142e-29
NZ_CP048815.1\|WP_056761855.1\|1522499_1522982_-\|CinA-family-protein	gnl\|CDD\|334938	pfam02464, CinA, Competence-damaged protein. CinA is the first gene in the competence-inducible (cin) operon, and is thought to be specifically required at some stage in the process of transformation. This Pfam family consists of putative competence-damaged proteins from the cin operon. Some members of this family have nicotinamide mononucleotide (NMN) deamidase activity.	3.41457e-45
NZ_CP048815.1\|WP_163229669.1\|1513478_1514279_-\|peptidase-C13	gnl\|CDD\|366741	pfam01650, Peptidase_C13, Peptidase C13 family. Members of this family are asparaginyl peptidases. The blood fluke parasite Schistosoma mansoni has at least five Clan CA cysteine peptidases in its digestive tract including cathepsins B (2 isoforms), C, F and L. All have been recombinantly expressed as active enzymes, albeit in various stages of activation. In addition, a Clan CD peptidase, termed asparaginyl endopeptidase or 'legumain' has been identified. This has formerly been characterized as a 'haemoglobinase', but this term is probably incorrect. Two cDNAs have been described for Schistosoma mansoni legumain; one encodes an active enzyme whereas the active site cysteine residue encoded by the second cDNA is substituted by an asparagine residue. Both forms have been recombinantly expressed.	1.22109e-11

>NZ_CP048815.1|WP_056761869.1|1514776_1515262_-|stringent-starvation-protein-B
MAQTNPPEDLMQYEAMAQDALRGVVKAALKKAAAPGGLPEPHHLYITFKTQAAGVSGPQDLLGKYPDEMTIILQHQYWDLAPGETFFSVTLKFGGQPKRLSIPYAAVTRFYDPSVQFALQFEAPEIAPQEPEPEPEPEVAAATEGGEEAPKIISLDQFRKK
>NZ_CP048815.1|WP_163229671.1|1514286_1514772_-|hotdog-fold-thioesterase
MSDIAPNDVAFDAPQSLTDEAILARFHTSKNPPGSARTLGFHMLSVNQAERRVEIAFAPSVEAVGNPMGQVQGGFVCAMLDECMSVAGMIASGMTSVVPTLEMKTSFLRPALPGPLKGVGWVVKQGRTVCFLEGELYDPEGRLLARASATAIPTPFSKFKT
>NZ_CP048815.1|WP_163229669.1|1513478_1514279_-|peptidase-C13
MRRFASLILGLLLTSLLAAAPARADTPSFSNWAVVVVAGDWRAHSGGPTEAFDNARRDVSATLLGLGFSPDAIRQYSMRPRRYPAPKPRKTDLGAIHADLRDLATKRTAGCLVYLTSHGAPEGALLGEDILPPSLLAAMVDDACPARPSIIVVSACFSGVFVKPLQREDRMILTAARPDRTSFGCSEDDKYPYFDDCLLSSAPAAHDFAVLGRAVQACVARRERDTGAEPASEPQLWIGAGLRPLLPLYAFPPRAPIKPAASPKRR
>NZ_CP048815.1|WP_163229667.1|1511152_1513360_-|serine-hydrolase
MTLRLSFRAVVSAAIIGCGLFGATIAETQDVARTARPPAGTTATLPSAPIPYTSTVRRRRPPRPQPAAPATARTAATPEPAAARPAPATSTLAAPPAATGETAAPSPVLASPATPLPAADLEAYVDGVVRDRMARDHIAGVTVAVVQNGQVVLKKGYGVASLRDRRQVDPDTTLFRVGSISKTFTWIALMNEVEAGRMRLDAPINVYLPEKLQLKDQGKKTPVRLRDLMTHTAGFEDRALGQLFERDPRRERPLELYLRQERPNRVREPGLLPAYSNYGVGLAGEALANVTGQPFEKVIADQVILPAGLTHTTFRENRPWRDDLPAPMAPALAAGLSDGFRWTPLGFQTEAPEFIGHIAPAGAASSTAGDMARYMTLLLNGGTIDGRTIFSPRTSAMFRTPMYRPAEGAPGWNAGFMDIPLPGGRRGFGHAGATLWFHSNLVMVPELGLGVFVAVNTDTGADLPASLPSTIIERFYAPRPEIPAASKITRDEARAYEGQFLTTRRAYGGLEGFIDRLIGQATVRAAPDGRLTLTIDGQSSQWTATDQPDTFAPASGAGLLVFQREDGKVARFFSPTGGAAFERIDFPHQRSLLTTFAVLAALAALATLVGVATRDRREARQTPTQARASLLQTIQAILWLVALVGVGVFASGADDMARAFYGWPSGWLLSASACAFVATLLTIATLAMLPVVWRGGRRVDSWTALRKLAFSCTTLIFLGFALLLAAWGFLEFWNA
>NZ_CP048815.1|WP_056761874.1|1510707_1511109_+|RusA-family-crossover-junction-endodeoxyribonuclease
MPPLGESDGWIHHGKVRAREADGELTLVVDGLTTQAKYYKPLIYEFFRKVWRGARPTWGEFSVEIGMEFVGEPPWMDLDNLAKALLDAIKGYAFHDDAQVARLLVERRPAERERIVIVVRRLESRFLRATLED
>NZ_CP048815.1|WP_056761875.1|1510381_1510705_+|YbjQ-family-protein
MLVATTNDLPGHRIVAHLGLVRGVTVRSRSVIGNIGGSIQSIFGGKLSIYVNLAEAARKEAYDLLVAHATEMGANAILAMRYDANEIMEGITEVLAYGTAVKVEPIA
>NZ_CP048815.1|WP_163229665.1|1509787_1510327_+|DUF1697-domain-containing-protein
MSPHIALLRGVNVGGRKVLKDDLLGLAKDLGFDDAKTLLASGNLVLWGKAEADAHLEQRLEDGLEKRMGLRTEFFARTSAELKEIIDANPYPDEVRSHPNHLLVHFMKAPLPDGDEATLRAAITGPETFKVGTRELYIDYPEDVGHSMLDRDWKKTKRSPLGTARNWNTVLKLATMVGL
>NZ_CP048815.1|WP_163229663.1|1508265_1509657_-|class-II-fumarate-hydratase
MTATRNETDTFGPIAVENDKYWGAQAQRSLGNFKIGWEKQPLPVVRALGIVKRAAAEANLALGKLDPKLAETIVAAANEVIEGKLNEHFPLVVWQTGSGTQSNMNANEVISNRAIQMLGGEMGSKKPVHPNDHVNMSQSSNDTYPTAMHVACAEQIVHDLLPALKHLHEALKAKSEAWAKIIKIGRTHTQDATPLTLGQEFGGYAQQVANGVERIEQTLPKLMQLAQGGTAVGTGLNAPIGFAEKVAEQIAAITGLPFTTAPNKFEALAAHDAMVFSHGAINTVAASLFKIANDIRFLGSGPRAGLGELSLPENEPGSSIMPGKVNPTQCEALTQVCVQVFGNHAAVTFAGSQGHFELNVFNPVMAYNFLQSVRLVADAAISFTDNCVVGIEPRVDNINKGVENSLMLVTALNGKLGYDACAKIAKTAHKNGTTLREEAVGGGYLTNEEFDQYVRPENMISPG
>NZ_CP048815.1|WP_163229661.1|1507816_1508263_-|GNAT-family-N-acetyltransferase
MIQLVRIIDDLPDGFDALLADAASEGVGAMARLAEGWASADQRFEDDGEALLGALLAGELAGIGGLSVEPAATEPARRMRRLYVRPTFRRQGVARTLASALIQEALDQVDLLTCNAAASPAATPFWEAQGFSRDSSGPWTHVLRRNVG
>NZ_CP048815.1|WP_163229659.1|1507076_1507820_-|AAA-family-ATPase
MTALERPYWIEALFERREGWNAGAYPFNLPVVRDLDRLAFHPRVTFLVGENGSGKSTLIEALAMAWGFNPEGGSTNVNFSTRASHSSLSRYIRRVRGALRPIDGYFLRAESFFNVASYVEEIGVSGYGDTPLHEQSHGEAFFALFDNRFRGDGLYILDEPEAALSPQRQLSFLARLHELVLARSQFIIATHSPILLGYPDAWIYQASERGLDRVDYEDTEHFQVTRNFLNRRQTFLDVLLADDDFEA
>NZ_CP048815.1|WP_163229673.1|1515816_1516104_-|hypothetical-protein
MTGRRVSGVWASADGGVSLELRPDGRFDERHDGELVFAGHYELIGDDIRLFEDGGGQLSGRLTEGRLSLAPPPRPAPHPRQWRRRSSHGEPHPLY
>NZ_CP048815.1|WP_056762111.1|1516472_1517381_+|AraC-family-transcriptional-regulator
MVEPGELAALIERYAPTDGDHKVCEKASLHRASQPSEPTHGVFGAAVCVVAQGRKQVLSGGSVLVYDALNYVVASVDLPVIGQVVEASPEAPYLSFRMTLDPAVIGDLLLQLGGEPALAQDAGPLVGAMAVSQVNPPLLDAVMRMVRLIDTPRDAAVLAPLIEREILYRMLLGDQGPRLAQIARADGRMRQVKRAIGWITQHFNQPFSIEELAAEARMSPSALHRHFKAVTALSPLQYQKQIRLQEARKLILAQRLDAGSAGHAVGYDSPSQFSREYARLFGAPPLRDAARLRGRPDMLLET
>NZ_CP048815.1|WP_056761864.1|1517503_1518166_+|porin
MSKIVAEFIGTFALVLFGCGAAVLGGDHVGQLGIALAFGFAIVAMAYGIGPVSGCHVNPAVSLAAFVAGRMSAKEMGLYWIAQFVGATAGAAVLLLIAGGTAHGLGQNGWGTGYGGGFGVEAAFAFEVVMTALFVIVILGSTGTDAAPGFAGLGIGIALAVIHIVGIQVTGVSVNPARSFGPAILVGGQAVAQLWLFFVAPAIGAVLGALLYRFNVLKVG
>NZ_CP048815.1|WP_056761862.1|1518220_1518451_-|hypothetical-protein
MRPSKTFKILALSVVAASALAAGVAFALPTHEVETYYYSDASHTEEVGHTLLACNGHFFSNGVQTAYADVTSTPCD
>NZ_CP048815.1|WP_163229674.1|1518522_1519374_-|hypothetical-protein
MTGAMLLAGLLTGFALVGQQPAAQAPPAPPPDPAVWWSPEIPKPPPEQDPFQGRRLRKGEQLVPIDNGVDPLLYRLWGLQPLQSQLIKPGELVLEVWARPATGVRQAVVRVTVRRDGRAFVQARAGLGCCTPEIGRRVDIDAELATQQIPPLKALVGAPMWSQPRSVIVDYGGGAVEPVCLEGVSWDVTLLVPGQARHLRRACDDAEVGSIAPALAAALSAASGRDARFDAVFARGGDFSRQQRAYEALIASGGQLKPGENNRPQPPAAPLPPEDPPTVNTRP
>NZ_CP048815.1|WP_056761859.1|1519376_1519925_-|acetolactate-synthase-small-subunit
MTDLQPASAYDMAPNEQVEQTATFALLVDNEPGVLHRVVGLFAARGYNIESLTVAETDRKAHTSRITVVTRGTRHVLDQIEAQLHKVVSVRRVHDVTRDPNGVERELALVKVRGQGVDRVEALRIAEIFRAKPVDTTLESFVFEISGAPSKIDKFLDLMRPLGLVELSRTGVLSIERGVEGM
>NZ_CP048815.1|WP_082564764.1|1519925_1520264_-|GIY-YIG-nuclease-family-protein
MYDLNSAWVYMLQCRDGSYYVGSHRGPDVEVRVAQHQEGRRGEYTACRLPVKLVWCQPFQYIVDAIDTERRIKGWSRAKKEAMMRGDWDALPSLSRRRSGKPKQQEHRVRAP
>NZ_CP048815.1|WP_056761857.1|1520413_1522219_-|acetolactate-synthase-3-large-subunit
MTAHQTIESSAAVDTASRAMTGAEIVVRGLVDQGVEVLFGYPGGAVLPIYDALFHESRLQHILVRHEQGATHAAEGYARSSGKPGVVLVTSGPGATNAITGIMDALMDSIPMVVITGQVPTHLIGTDAFQEADTVGMTRSCTKHNYLVKDVRDLPQIIHEAFKIATTGRPGPVLIDIPKDVQFAKGEYYGPTEVASTHAYNPRVKGDQNRIAEAARLIAGARRPIFYTGGGVINAGPKAAEALREFAALTGAPVTSTLMGLGAFPAADPAWLGMLGMHGTFEANNAMHDCDVMICVGARFDDRVTGRLDAFSPGSKKIHIDIDASSINKNVRVDLPIVGDAGSVLEDLIAAWKAAGHQANKAALTDWWAQIDQWRARQCLNYRRSDTVIKPQYAIERLYALTRDKDVYITTEVGQHQMWAAQFFRFEEPNRWMTSGGLGTMGYGLPAALGVQLAHPGALVVDIAGEASIQMCIQELSTAIQFNLPVKIFILNNEWMGMVRQWQQLLHGERYSHSYSDSLPDFVKLAEAYGAVGIRCSDPAELDGKILEMINSDKVVVFDCRVEKHENCLPMIPSGKAHNEMIMGDVEDIGNVIGAAGAGLV
>NZ_CP048815.1|WP_056761855.1|1522499_1522982_-|CinA-family-protein
MTELARLAAAVAARLTERGETVAVAESSTGGLISAALLAVSGASKFYVGGAVVYTARARLTLLDIPQKAMDGLRSASEPYAVLLARVAGKNLKATWGLSETGAAGPDGNRYGDAAGHSCAAVVGPDTEVSLTVETGLDDRETNMRRFAEHALALLLERLG
>NZ_CP048815.1|WP_163229676.1|1522991_1523192_-|hypothetical-protein
MTFKAADVGIVTMIDGGVIKGPAAQSREMAATFDRLIAERGLRVTSEETACAKSLMDQIAFSEDAN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP048815_1	1.1\|1515440\|32\|NZ_CP048815\|CRISPRCasFinder	1515440-1515471	32	MN850648	Escherichia phage anhysbys, complete genome	143968-143999	9	0.719
NZ_CP048815_1	1.1\|1515440\|32\|NZ_CP048815\|CRISPRCasFinder	1515440-1515471	32	NC_034248	Rhizobium phage RHEph10, complete genome	107386-107417	9	0.719
NZ_CP048815_1	1.1\|1515440\|32\|NZ_CP048815\|CRISPRCasFinder	1515440-1515471	32	NZ_CP050092	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b6, complete sequence	415764-415795	10	0.688
NZ_CP048815_1	1.1\|1515440\|32\|NZ_CP048815\|CRISPRCasFinder	1515440-1515471	32	NZ_CP054022	Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence	82363-82394	10	0.688
NZ_CP048815_1	1.1\|1515440\|32\|NZ_CP048815\|CRISPRCasFinder	1515440-1515471	32	NZ_CP054032	Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence	1042754-1042785	10	0.688

1. spacer 1.1|1515440|32|NZ_CP048815|CRISPRCasFinder matches to MN850648 (Escherichia phage anhysbys, complete genome) position: , mismatch: 9, identity: 0.719

gcatccttcagcaaggaagaggagggagcctt	CRISPR spacer
gcatccttcaacaaggaacaggagaaccagta	Protospacer
**********.******* *****..    *

2. spacer 1.1|1515440|32|NZ_CP048815|CRISPRCasFinder matches to NC_034248 (Rhizobium phage RHEph10, complete genome) position: , mismatch: 9, identity: 0.719

gcatccttcagcaaggaagaggagggagcctt	CRISPR spacer
gacgatctcagcaaggaagaggcggcagccct	Protospacer
*    ..*************** ** ****.*

3. spacer 1.1|1515440|32|NZ_CP048815|CRISPRCasFinder matches to NZ_CP050092 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b6, complete sequence) position: , mismatch: 10, identity: 0.688

gcatccttcagcaaggaagaggagggagcctt	CRISPR spacer
gcatccttcagcaaggacaaggacaagatcga	Protospacer
***************** .**** .....*

4. spacer 1.1|1515440|32|NZ_CP048815|CRISPRCasFinder matches to NZ_CP054022 (Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence) position: , mismatch: 10, identity: 0.688

gcatccttcagcaaggaagaggagggagcctt	CRISPR spacer
gcatccttcagcaaggacaaggacaagatcga	Protospacer
***************** .**** .....*

5. spacer 1.1|1515440|32|NZ_CP048815|CRISPRCasFinder matches to NZ_CP054032 (Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence) position: , mismatch: 10, identity: 0.688

gcatccttcagcaaggaagaggagggagcctt	CRISPR spacer
gcatccttcagcaaggacaaggacaagatcga	Protospacer
***************** .**** .....*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

225510 : 233542

Escherichia_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_163228424.1\|225510_226500_-	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	3.5e-48	34.6
WP_163228425.1\|226872_227442_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A1D8EQH2	Escherichia_phage	4.3e-30	44.6
WP_163228426.1\|227471_228524_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.4e-87	48.7
WP_163228427.1\|228516_229419_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.2e-26	33.4
WP_163228428.1\|229415_230303_+	glucose-1-phosphate thymidylyltransferase RfbA	K7QKA7	Escherichia_phage	3.0e-91	59.3
WP_056762168.1\|230299_231421_+	DUF1972 domain-containing protein	NA	NA	NA	NA
WP_163228429.1\|231417_232473_+	glycosyltransferase	NA	NA	NA	NA
WP_163228430.1\|232474_233542_+	acyltransferase family protein	A0A2H4JA46	uncultured_Caudovirales_phage	7.0e-10	25.8

DBSCAN-SWA_2

1074894 : 1116167

Cronobacter_phage(10.0%)

capsid,tail,protease,portal,transposase,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_163229132.1\|1074894_1075638_+\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_163229134.1\|1075675_1076428_+	RDD family protein	NA	NA	NA	NA
WP_056753348.1\|1076542_1079137_+	ATP-dependent chaperone ClpB	K4FB40	Cronobacter_phage	4.7e-124	39.0
WP_056753339.1\|1079465_1080035_+	OmpA family protein	NA	NA	NA	NA
WP_163229136.1\|1080214_1080850_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_163229137.1\|1080935_1083446_-	PAS domain S-box protein	A0A1V0SGX0	Hokovirus	1.2e-39	32.9
WP_163229139.1\|1083712_1084612_-	class A beta-lactamase	A0A1B0VBP7	Salmonella_phage	2.8e-60	47.5
WP_163229141.1\|1084706_1085573_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_163233654.1\|1085770_1087054_+	amidohydrolase family protein	NA	NA	NA	NA
WP_056753323.1\|1087249_1087489_+	hypothetical protein	NA	NA	NA	NA
WP_163229143.1\|1087632_1088517_-	EamA family transporter	NA	NA	NA	NA
WP_163229145.1\|1088548_1088875_-	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_056753316.1\|1089108_1089306_-	hypothetical protein	NA	NA	NA	NA
WP_163229147.1\|1089449_1091102_+	NAD(P)-binding protein	NA	NA	NA	NA
WP_163229149.1\|1091241_1092471_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA
WP_056753308.1\|1092670_1093264_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_163229151.1\|1093260_1093800_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_163229153.1\|1093998_1095927_+	potassium transporter Kup	M1IAJ4	Acanthocystis_turfacea_Chlorella_virus	1.2e-60	31.4
WP_163233655.1\|1096123_1097038_-	iron-containing redox enzyme family protein	NA	NA	NA	NA
WP_163229155.1\|1097145_1097427_-	hypothetical protein	NA	NA	NA	NA
WP_163229157.1\|1097549_1099382_-	ATP-binding cassette domain-containing protein	A0A2K9L0W2	Tupanvirus	4.0e-29	27.2
WP_056753298.1\|1099509_1100259_+	hypothetical protein	NA	NA	NA	NA
WP_056753296.1\|1100349_1103205_-	TonB-dependent receptor	NA	NA	NA	NA
WP_163229159.1\|1103680_1103959_+	hypothetical protein	NA	NA	NA	NA
WP_163229162.1\|1103973_1106103_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA
WP_056753287.1\|1106182_1106668_+	YcgN family cysteine cluster protein	NA	NA	NA	NA
WP_163229163.1\|1106694_1106922_-	DUF4287 domain-containing protein	NA	NA	NA	NA
WP_163229165.1\|1107166_1107724_+	sugar O-acetyltransferase	M1HKK6	Paramecium_bursaria_Chlorella_virus	4.6e-05	29.8
WP_163229167.1\|1108069_1108573_+	hypothetical protein	NA	NA	NA	NA
WP_163233656.1\|1108529_1109708_+	DNA-packaging protein	A0A0K1LMR9	Caulobacter_phage	1.2e-66	39.9
WP_163229169.1\|1109792_1110869_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_163229171.1\|1110900_1111329_-	DUF559 domain-containing protein	NA	NA	NA	NA
WP_163229173.1\|1111508_1112666_+\|portal	phage portal protein	W8ECU7	Geobacillus_phage	1.1e-69	43.1
WP_163229175.1\|1112794_1113037_+	hypothetical protein	NA	NA	NA	NA
WP_163229177.1\|1113171_1113588_+\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	1.5e-24	45.1
WP_163229178.1\|1113648_1114137_+	hypothetical protein	NA	NA	NA	NA
WP_163229180.1\|1114142_1114346_+	hypothetical protein	NA	NA	NA	NA
WP_163229182.1\|1114487_1115714_+\|capsid	phage major capsid protein	Q3HQT0	Burkholderia_phage	5.7e-80	43.0
WP_163229184.1\|1115897_1116167_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA

DBSCAN-SWA_3

2520598 : 2530120

uncultured_Mediterranean_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_163230633.1\|2520598_2521906_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	A0A1V0SKB7	Klosneuvirus	1.4e-15	28.6
WP_163230635.1\|2521883_2522816_+	EamA family transporter	NA	NA	NA	NA
WP_163230637.1\|2522930_2523443_-	superoxide dismutase family protein	Q9MC02	Salmonella_phage	3.3e-13	31.7
WP_163230639.1\|2523554_2526338_+	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	2.1e-98	32.8
WP_163230641.1\|2526386_2526875_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	6.4e-35	48.4
WP_163230643.1\|2527013_2528321_+	Nramp family divalent metal transporter	NA	NA	NA	NA
WP_163230645.1\|2528456_2529272_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	5.7e-20	34.4
WP_163230647.1\|2529271_2530120_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	2.0e-20	32.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage