CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP047633	Klebsiella pneumoniae strain K2606 chromosome, complete genome	2 crisprs	csa3,RT,cas3,DEDDh,DinG,WYL	4
NZ_CP047636	Klebsiella pneumoniae strain K2606 plasmid unnamed3, complete sequence	0 crisprs	DEDDh,PD-DExK	2
NZ_CP047637	Klebsiella pneumoniae strain K2606 plasmid unnamed4, complete sequence	0 crisprs	DEDDh	0
NZ_CP047634	Klebsiella pneumoniae strain K2606 plasmid unnamed1, complete sequence	0 crisprs	csa3	1
NZ_CP047635	Klebsiella pneumoniae strain K2606 plasmid unnamed2, complete sequence	0 crisprs	NA	0
NZ_CP047638	Klebsiella pneumoniae strain K2606 plasmid unnamed5, complete sequence	0 crisprs	NA	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP047633_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047633_1

2554220-2554300

Orphan

Consensus_repeat	Method
CGCCACCGGGCATTGAAGCGGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047633_1

>merge|NZ_CP047633|1|2554220-2554300|CRISPRCasFinder
CGCCACCGGGCATTGAAGCGGGAGAGGCGCTGGATGTCCATTGCCGGTAAGGCGCAGTCGCCACCGGGCATTGAAGCGGGA

>NZ_CP047633|1|1|2554220-2554300|CRISPRCasFinder
CGCCACCGGGCATTGAAGCGGGA	GAGGCGCTGGATGTCCATTGCCGGTAAGGCGCAGT
CGCCACCGGGCATTGAAGCGGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047633.1\|WP_004180001.1\|2560711_2561440_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224041
NZ_CP047633.1\|WP_004212061.1\|2545034_2546177_-\|pyrroloquinoline-quinone-biosynthesis-protein-PqqE	unknown	unknown	gnl\|CDD\|235397
NZ_CP047633.1\|WP_102084897.1\|2547193_2548120_-\|pyrroloquinoline-quinone-biosynthesis-protein-PqqB	unknown	unknown	gnl\|CDD\|235361
NZ_CP047633.1\|WP_048331858.1\|2552907_2554098_+\|redoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|239310
NZ_CP047633.1\|WP_002905689.1\|2548174_2548246_-\|pyrroloquinoline-quinone-precursor-peptide-PqqA	unknown	unknown	gnl\|CDD\|178960
NZ_CP047633.1\|WP_004176065.1\|2550724_2551465_+\|response-regulator	unknown	unknown	gnl\|CDD\|181883
NZ_CP047633.1\|WP_002905540.1\|2557322_2558708_-\|diaminobutyrate--2-oxoglutarate-transaminase	unknown	unknown	gnl\|CDD\|235889
NZ_CP047633.1\|WP_009307812.1\|2548382_2549402_-\|membrane-dipeptidase	unknown	unknown	gnl\|CDD\|366534
NZ_CP047633.1\|WP_163622017.1\|2554744_2555638_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|237907
NZ_CP047633.1\|WP_020316442.1\|2564878_2565802_-\|TIM-barrel-protein	unknown	unknown	gnl\|CDD\|275172
NZ_CP047633.1\|WP_163622020.1\|2559014_2559950_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270369
NZ_CP047633.1\|WP_004180004.1\|2559974_2560715_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223673
NZ_CP047633.1\|WP_004143685.1\|2546444_2547200_-\|pyrroloquinoline-quinone-synthase-PqqC	unknown	unknown	gnl\|CDD\|235353
NZ_CP047633.1\|WP_134156178.1\|2563692_2564865_-\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP047633.1\|WP_163622019.1\|2555831_2557313_-\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|99743
NZ_CP047633.1\|WP_002905531.1\|2562548_2563655_+\|DUF4056-domain-containing-protein	unknown	unknown	gnl\|CDD\|372540
NZ_CP047633.1\|WP_163622022.1\|2561436_2562132_-\|thiaminase-II	unknown	unknown	gnl\|CDD\|381702
NZ_CP047633.1\|WP_135769452.1\|2549645_2550638_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP047633.1\|WP_004143686.1\|2546163_2546442_-\|pyrroloquinoline-quinone-biosynthesis-peptide-chaperone-PqqD	unknown	unknown	gnl\|CDD\|179362
NZ_CP047633.1\|WP_020802158.1\|2551461_2552805_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|236531

Protein	Function_ID	Function_description	E-value
NZ_CP047633.1\|WP_004180001.1\|2560711_2561440_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224041	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism].	2.02366e-77
NZ_CP047633.1\|WP_004212061.1\|2545034_2546177_-\|pyrroloquinoline-quinone-biosynthesis-protein-PqqE	gnl\|CDD\|235397	PRK05301, PRK05301, pyrroloquinoline quinone biosynthesis protein PqqE; Provisional.	0
NZ_CP047633.1\|WP_102084897.1\|2547193_2548120_-\|pyrroloquinoline-quinone-biosynthesis-protein-PqqB	gnl\|CDD\|235361	PRK05184, PRK05184, pyrroloquinoline quinone biosynthesis protein PqqB; Provisional.	0
NZ_CP047633.1\|WP_048331858.1\|2552907_2554098_+\|redoxin-domain-containing-protein	gnl\|CDD\|239310	cd03012, TlpA_like_DipZ_like, TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.	4.48982e-65
NZ_CP047633.1\|WP_002905689.1\|2548174_2548246_-\|pyrroloquinoline-quinone-precursor-peptide-PqqA	gnl\|CDD\|178960	PRK00284, pqqA, pyrroloquinoline quinone precursor peptide PqqA.	3.82571e-09
NZ_CP047633.1\|WP_004176065.1\|2550724_2551465_+\|response-regulator	gnl\|CDD\|181883	PRK09468, ompR, osmolarity response regulator; Provisional.	1.70937e-78
NZ_CP047633.1\|WP_002905540.1\|2557322_2558708_-\|diaminobutyrate--2-oxoglutarate-transaminase	gnl\|CDD\|235889	PRK06931, PRK06931, diaminobutyrate--2-oxoglutarate transaminase.	0
NZ_CP047633.1\|WP_009307812.1\|2548382_2549402_-\|membrane-dipeptidase	gnl\|CDD\|366534	pfam01244, Peptidase_M19, Membrane dipeptidase (Peptidase family M19).	9.57006e-108
NZ_CP047633.1\|WP_163622017.1\|2554744_2555638_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|237907	PRK15092, PRK15092, DNA-binding transcriptional repressor LrhA; Provisional.	3.2728e-48
NZ_CP047633.1\|WP_020316442.1\|2564878_2565802_-\|TIM-barrel-protein	gnl\|CDD\|275172	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase. Members of this family include the enzyme myo-inosose-2 dehydratase, product of the gene iolE, as found in inositol utilization cassettes in many species. [Energy metabolism, Sugars].	1.74049e-52
NZ_CP047633.1\|WP_163622020.1\|2559014_2559950_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270369	cd13651, PBP2_ThiY, Substrate binding domain of ABC-type transporters for thiamin biosynthetic pathway intermediates; a member of the type 2 periplasmic binding fold superfamily. ThiY is the periplasmic N-formyl-4-amino-5-(aminomethyl)-2-methylpyrimidine (FAMP) binding component of the ABC transport system (ThiXYZ). FAMP is imported into cell by the transporter, where it is then incorporated into the thiamin biosynthetic pathway. The closest structural homologs of ThiY are periplasmic binding proteins involved in alkanesulfonate/nitrate and bicarbonate transport , as well as THI5 which is responsible for the synthesis of 4-amino-5-(hydroxymethyl)-2-methylpyrimidine phosphate (HMP-P) in the thiamin biosynthetic pathway of eukaryotes. After binding the ligand, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ThiY/THI5 proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.4066e-94
NZ_CP047633.1\|WP_004180004.1\|2559974_2560715_-\|ABC-transporter-permease	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	3.46671e-60
NZ_CP047633.1\|WP_004143685.1\|2546444_2547200_-\|pyrroloquinoline-quinone-synthase-PqqC	gnl\|CDD\|235353	PRK05157, PRK05157, pyrroloquinoline quinone biosynthesis protein PqqC; Provisional.	1.61512e-167
NZ_CP047633.1\|WP_134156178.1\|2563692_2564865_-\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	2.06836e-60
NZ_CP047633.1\|WP_163622019.1\|2555831_2557313_-\|aspartate-aminotransferase-family-protein	gnl\|CDD\|99743	cd06450, DOPA_deC_like, DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.	1.23416e-116
NZ_CP047633.1\|WP_002905531.1\|2562548_2563655_+\|DUF4056-domain-containing-protein	gnl\|CDD\|372540	pfam13265, DUF4056, Protein of unknown function (DUF4056). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 355 and 380 amino acids in length.	3.72418e-180
NZ_CP047633.1\|WP_163622022.1\|2561436_2562132_-\|thiaminase-II	gnl\|CDD\|381702	cd19367, TenA_C_ScTHI20-like, TenA_C family similar to the C-terminal TenA_C domain of Saccharomyces cerevisiae THI20 protein. This TenA family belongs to the TenA_C class as it has a conserved active site Cys residue; the double Glu residues identified in the active site of TenA_E from the archaeon Pyrococcus furiosus is conserved in this family. TenA_C proteins (EC 3.5.99.2) catalyze the hydrolysis of the thiamin breakdown product 4-amino-5-amino-methyl-2-methylpyrimidine (amino-HMP) to 4-amino-5-hydroxymethyl-2-methylpyrimidine (HMP) in a thiamin salvage pathway. Saccharomyces cerevisiae THI20 includes a C-terminal tetrameric TenA-like domain fused to an N-terminal HMP kinase/HMP-P kinase (ThiD-like) domain, and participates in thiamin biosynthesis, degradation and salvage; the TenA-like domain catalyzes the production of HMP from thiamin degradation products (salvage). A majority of this family are single-domain TenA_C- like proteins; some however have additional domains such as a ThiD domain. It has also been suggested that TenA proteins act as transcriptional regulators based on changes in gene-expression patterns when TenA is overexpressed in Bacillus subtilis, however this effect may be indirect.	1.16029e-110
NZ_CP047633.1\|WP_135769452.1\|2549645_2550638_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	4.23907e-29
NZ_CP047633.1\|WP_004143686.1\|2546163_2546442_-\|pyrroloquinoline-quinone-biosynthesis-peptide-chaperone-PqqD	gnl\|CDD\|179362	PRK02079, PRK02079, pyrroloquinoline quinone biosynthesis peptide chaperone PqqD.	1.58304e-42
NZ_CP047633.1\|WP_020802158.1\|2551461_2552805_+\|HAMP-domain-containing-protein	gnl\|CDD\|236531	PRK09467, envZ, osmolarity sensor protein; Provisional.	1.62848e-43

>NZ_CP047633.1|WP_048331858.1|2552907_2554098_+|redoxin-domain-containing-protein
MSILIAFLGGMLTLLSPCTLPVIPLLFASVRGRRGQLAIMLAGMALMFGAVSWLVTVASGWVVNLTLAGRGLALAFFALVGLSLLSQRVAQRLTSPLVALGNQLNDASSRQRGWIGSLLAGLAVGLLWAPCAGPVLGAILSLGFVHPGQATTGGLLLAYGSGGALMLFLLGWCGAALIARLRRGQAFGERLRRLAGGAMLASVALIASGGDRYLQSAGGLSQALEQRLADRLPQPEQKTSLQPIAAPQPSSAMPSLAGGSAWINSPALTPERLKGKVVLVDFWTRECINCQHTLPYVRDWANKYRAAGLVVIGVHTPEYPWERSLPLLRQAVKDWRITYPVVADNEYAIWNAFGNQYWPAHYIFDARGQLRYTAFGEGDYARQEQVIQQLLQESKA
>NZ_CP047633.1|WP_020802158.1|2551461_2552805_+|HAMP-domain-containing-protein
MRFWPASLQSRLMALLFLALLLANTLTLSLLFYERMSSARSVMLGNLASDVATSVAILDRLPAAERPQWLPKLARGNYRYLLDAGERGDYPDSWRARDAARSLQEALSAQYPVSIVAIPGPRQHIQAHITLHDGAPLTLDLWPKLPAIARWLPVVLIAQFVLLLACAWYAVRQVLLPISRFTHAVNALEPASDTAGTMAEQGPEEVRRAARAFNAMQARIHDHLQERARILAAISHDLQTPITRMKLRVEMADQPELRDKLLQDLDNMTRLVREGIAFARTSQPLEEARQRLNLDAFLDTIVCDYADVGRPVQFCPEETAGVVWIPPQALRRVMTNLIDNALKFGTTATVTLTRDAVGDITLHVLDEGPGIPEASLQAVLQPFYRLEDSRNRDTGGTGLGLAIAAQLVSQMDGALRLANRPQGGLDASVRLAAAGLYPAVSPGKTDN
>NZ_CP047633.1|WP_004176065.1|2550724_2551465_+|response-regulator
MERIDHILVVDDDRDIRELIVDYLEKSGYRASGAANGKAMWSVLKNHQIDLIVLDIMMPGEDGLTLCRQLRANPQQDIPVLMLTARTDDSDRILGLEMGADDYLIKPFVARELLARIKAILRRTRALPPNLQITEAGRLIVFGDWLLDTAARHLLDDSGAIVALSGAEYRLLRVFLDHPQRVLNRDQLLNLTQGRDAELFERSIDLLVSRLRQRLREDAREPAYIKTVRSEGYVLSVPVSIRERHE
>NZ_CP047633.1|WP_135769452.1|2549645_2550638_+|alpha/beta-hydrolase
MNRLSLIRYTSAVALGLSTLWSAAVCAVEDAGAFDKIQQVRAGDLNIGYVDIGPRDGQPVILLHGWPYDIQSYAQVAPALAQKGYRVIVPYLRGYGTTRFLSASTPRNGQPSAMAADIVHLMDALNIRQADLAGFDWGARTADIVAALWPQRVKSLVSVSGYLISSQQIGEKPLPPQAELSWWYQFYFATPRGEAGYRQNTHDFAKFIWHQASPQWQFSDATFAKTARALDNPDHVAITISNYRWRLGLEKGEAKYAGYEQRLAALPPITVPTITLEGANNGAPHPAPASYRAKFTGKYEHRDLPGAVGHNPPQEDPTAFVQAVVDADRL
>NZ_CP047633.1|WP_009307812.1|2548382_2549402_-|membrane-dipeptidase
MAIFDGHNDLLLNLWLHHREDPVSAFFAGIENGHLDYPRMLQGGFAGGLFALFVPPQEYIARMTPQYASQRWDPIDILWQQLAILKQLIAHSAGRLRLCLSAADIERCREDKVLAMVAHIEGAGGFDGEGRDLQAFYAAGVRSIGPFWNIANRFGSGVNGSFPGSPDTGPGLTAAGIDLIKQVNALKMQMDVSHMNEKAFWDTAHHATSPLVATHSNAHALCPQPRNLTDQQLRAIRDSGGVVGVNFGNAFLRADGRRDSDTPLTTIVRHIDYLINIMGEDHVALGSDFDGITLPDELGDVAGLPRLINTLRASGYDQLVLDKLLWRNWLRVLKNVWQQ
>NZ_CP047633.1|WP_002905689.1|2548174_2548246_-|pyrroloquinoline-quinone-precursor-peptide-PqqA
MWKKPAFIDLRLGLEVTLYISNR
>NZ_CP047633.1|WP_102084897.1|2547193_2548120_-|pyrroloquinoline-quinone-biosynthesis-protein-PqqB
MFIKVLGSAAGGGFPQWNCNCANCQGLRDGTIQAAPRTQSSIIVSDNGKEWVLCNASPDISQQIAHTPELNKAGVLRGTHIGGIILTDSQIDHTTGLLSLREGCPHQVWCTPEVHEDLSTGFPVFTMLRHWNGGLVHHPIAPLQPFTVDACPDLQFTAVPIASNAPPYSPYRDRPLPGHNVALFIENRRNGQTLFYAPGLGEPDEALLPWLQKADCLLIDGTVWQDDELQAAGVGRNTGRDMGHLALGDEHGMMALLASLPAKRKILIHINNTNPILNEQSPQRQALTQQGIEVSWDGMAITLQDTAC
>NZ_CP047633.1|WP_004143685.1|2546444_2547200_-|pyrroloquinoline-quinone-synthase-PqqC
MLITDTLSPQAFEEALRAKGAFYHIHHPYHIAMHNGDATREQIQGWVANRFYYQTTIPLKDAAIMANCPDAQTRRKWVQRILDHDGSHGEDGGIEAWLRLGEAVGLSRDDLLSERHVLPGVRFAVDAYLNFARRACWQEAACSSLTELFAPQIHQSRLDSWPQHYPWIKEEGYFYFRSRLSQANRDVEHGLALAKAYCDSAEKQNRMLEILQFKLDILWSMLDAMTMAYALQRPPYHTVTDKAAWHTTRLV
>NZ_CP047633.1|WP_004143686.1|2546163_2546442_-|pyrroloquinoline-quinone-biosynthesis-peptide-chaperone-PqqD
MQKTSIVAFRRGYRLQWEAAQESHVILYPEGMAKLNETAAAILELVDGRRDVAAIIAMLNERFPEAGGVDDDVIEFLQIACQQKWITCREPE
>NZ_CP047633.1|WP_004212061.1|2545034_2546177_-|pyrroloquinoline-quinone-biosynthesis-protein-PqqE
MSQSKPTVNPPLWLLAELTYRCPLQCPYCSNPLDFARQDKELTTEQWIEVFRQARAMGSVQLGFSGGEPLTRKDLPELIRAARDLGFYTNLITSGIGLTESKLDAFSEAGLDHIQISFQASDEVLNAALAGNKKAFQQKLAMAKAVKARDYPMVLNFVLHRHNIDQLDKIIELCIELEADDVELATCQFYGWAFLNREGLLPTREQIARAEQVVADYRQKMAASGNLTNLLFVTPDYYEERPKGCMGGWGSIFLSVTPEGTALPCHSARQLPVAFPSVLEQSLESIWYDSFGFNRYRGYDWMPEPCRSCDEKEKDFGGCRCQAFMLTGSADNADPVCSKSPHHHKILEARREAACSDIKVSQLQFRNRTRSQLIFQTRDL
>NZ_CP047633.1|WP_163622017.1|2554744_2555638_-|LysR-family-transcriptional-regulator
MGMMMEKRLPGLDLDALRSFVTGMECGSFAQAALRLSRSTSAVSAQLKKLESQCGAALVTKQGRHLVLTAEGEKLMSYARRLLALNDETLRALQGERLTGEIHLGMQEDFGESLMPEILGQFKRHHPQVRIVARVDRNGPLRQALAEEALDLALLWQTEDQGPGLGLCPLAWIAHPDLDIRALLVSGEPLPLVMFDSPCLMRSRAIACLDAAGIPWQVVFVSHSLSGIWAAVQAGLGLTIRTRIGMPGNLRPAGGLLPAPGSLAVSLRQTPREEHHSAAVALLGELMTEALQEWLNR
>NZ_CP047633.1|WP_163622019.1|2555831_2557313_-|aspartate-aminotransferase-family-protein
MTAMSTLNPILAGSAQSVEAYKQVIEQTSQAVVQWLKQPEMYQGKSVDELRERISLEFNEQGLGNQAAIDRAIEYFLKDSLSVHHPQCVAHLHCPSLVISQAAEVLINATNQSMDSWDQSPSATIIEMKLIEWLRARVGFPAGDAGVFTSGGTQSNLMGLMLARDAFFARQGHSIQQDGLPGDIRKYKVLCSENAHFSVQKNMALMGLGYRSVTLVKTDEFARMDVSDLQAKIAQAQANGEQIMAIVATAGTTDAGAIDPLRDIAGIAAEHQIWLHVDAAWGGALLLSEQYRDYLDGLELVDSVTLDFHKQFFQTISCGAFLLKDARHYELMRYQAAYLNSEFDEEHGVPNLVSKSLQTTRRFDALKLWMGLEALGQKQYAAIIDHGVTMAKNVAEYVKSQPTLELVMQPQLASVLFRSRPAQMAGSDAAAIALLNQRVGDALLASGRANVGVTEHNGVTCLKLTLLNPVVTLDDVKVLLNLVERTAQELLAQ
>NZ_CP047633.1|WP_002905540.1|2557322_2558708_-|diaminobutyrate--2-oxoglutarate-transaminase
MMTDKVRIDTLRADLLDANNETFLARQAEFESNVRSYPRKLPLAITKAEGVWLTDADNKQYLDCLAGAGTLALGHNHPDVLQSIQSVITSGLPLHTLDLTTPLKDRFSEYLLSCLPGEGKEYCLQFTGPSGADAVEAALKLAKKYTGRTAVISFSGGYHGMTHGALSVTGNLSPKAAVNGMMPEVQFMPYPHLYRCPLGIGGEAGVKALTYYFENLINDVESGVRKPAAVILEAVQGEGGVNPAPVEWLQRIRKVTEEHGILLIVDEVQAGFARTGKFFAFEHAGIQPDIIVMSKAVGGGLPLAVLGIKKQFDAWEPGHHTGTFRGNQLAMATGLTTLRHLRDNKIADKVAAQGEWLKGKLAELQKRYPVIGHVRGLGLMIGIEIVKPNEAQDHMGCYPADGELSALLQKKCFEAGLILERGGRHGCVLRLLPSLLISDAELDVFLDKFEQALLAAGVKPV
>NZ_CP047633.1|WP_163622020.1|2559014_2559950_-|ABC-transporter-substrate-binding-protein
MKKSLFAGATLTALFSGHALANEPLTLVLDWYINPDHAPIMVAEQIGAFKAQGLDVRIVPPSDPALPPRMVAARQADLAITYQPQVHFFADEGLPLVRVGTLINSPLNTVIALDKQIKTPADLQGKKVGYSVSGIEQATLATMAQHAGIDPASIKLVNVNFQLTSALLAGQVDAVIGGYRNIEAQELKLQGKTPVVMNVEDYGVPAYDELVIVAHRDAIHEAKIRKFLTALQAGVGYLRAHPQKSWKAFAAAHPELRTELNHQAWLQTVPLFATDPAALDKARYETYEQFLYNNKLVKKVTPLTNYAVELH
>NZ_CP047633.1|WP_004180004.1|2559974_2560715_-|ABC-transporter-permease
MTGRLWRGGMVFGGLMLLWGLASRSGIPHFLLPSPLAVAEALWVNRAYLGWHTLITLSEILSGLALGVTLGVTLALGMILSPRLQRWLMPLVLTSQAIPVFALAPLLVLWLGFGMSAKVAMAVLVIFFPVTSAFFDGLRRVNQEYLDLARSMNASFGAQLRHVRLMAALPALGSGLRMAAAVAPIGAIIGEWVGSAEGLGYVMLNANARLQTDICFAALFILVLLTLLLWLAVDTLLHRLIDWSPE
>NZ_CP047633.1|WP_004180001.1|2560711_2561440_-|ABC-transporter-ATP-binding-protein
MTAPGIEVRGLSLHVGDRRLFDNLSFTVPGGQWVSLLGASGAGKTSLLRVMAGLAPATRGEVVASDGQPIQGRLAWMGQKDLLYPWLSVRDNVALGARLRGEKVDRARVAALLEQVELSSCADARPATLSGGMRQRAALARTLYEDRPIVLMDEPFSALDTLTRTRIQTLAATLLAGRTVVLITHDPQEACRLSHRLLVLSAADGDIDDSHHLAGTPPRAPDAPDLLIGQAALLQQLMRAQP
>NZ_CP047633.1|WP_163622022.1|2561436_2562132_-|thiaminase-II
MIVPAFSQGLYGRLRQLAAADWQRYVAHPFVQQLASGTLAENAFRRYLTQDYLFLIHFARSYALLVSKLRTLPEMRAAAASMNAILNELPLHVGYCAQWGISEPEMATQPEAPETINYTRYVLDIGHSGDALDLLVALMPCVAGYAEIGLGLLQHPATRLDDNPYASWIRNYGDEGYLQGVSAALALLETVWQQRGSEARITELSEIFTTATRLEAQFWQMGLNAAAETRA
>NZ_CP047633.1|WP_002905531.1|2562548_2563655_+|DUF4056-domain-containing-protein
MRKAFWLLFALALPALAQDPVLPAVTAIHTAPTLGELPPPESLRPCCAFGYDLHVRAAGIPIPMYQIGNVLTLGTLGKHHYNDSAFGAVKNLLGLSEEQNGLIYTRRGGFIDIAHVRDTADNTFYLFNRIAPTLGQAGRIFYSEELGVRRVQLNAFTPPAGVRQRYQLAAWLAGHLAFEIAQWHEIAQWYGFQSVPGFSEEISAFSPEDLYSNLLGARLAINVILSGHGGSLEDYNQAMDAALKQVLTRLLVATRGETEAMFQQIDGDWWNSHRRVPDKFLVLKRNYDLQENRLPTPVPFETMPPYRLTMPEQVGGFRLRDLGELQIYPGHDMQALPVPAQYYGAGAFQGLADRAHEADKTQLARTEK
>NZ_CP047633.1|WP_134156178.1|2563692_2564865_-|Gfo/Idh/MocA-family-oxidoreductase
MINGLKPLDRTLRWGMVGGGGSSQIGYIHRSAALRDNTFTLQAGAFDIDAERGRQFGQRLGVDPDRCYGDYQSLFRSEAARPDGIQAVSVATPNNTHYAICRAALEAGLHVVCEKPLCFSSEEADELVALSQRRRKIIGVTYGYAGHQLILQARQMIADGLLGDIRIVNMQFAHGFHAQPVEQENASTRWRVDPRFVGPSYVLGDLATHPLFLVETMAPQLKITRLMCARQSFVKSRAPLEDNAHVLMEYDNGAIGSLWSSAVNCGSMHGQKVRIIGEKASLEWWDEQPNQLRYEIQGDPVRILERGMDYLDPLARQDDRIGGGHPEGLFEAWSNLYRRFAIAMDAADRRDEALLADFWYPDARAGAFGVRWVENCVRSADNGACWVDFR
>NZ_CP047633.1|WP_020316442.1|2564878_2565802_-|TIM-barrel-protein
MIHPIANAPCSWGVDDPKNPNLPAWATVLKEAAQAGYRSIELGPWGYLPTDPASLRAALEQHQLSLVAGTIFDDLVSEAHFPTLVALTHQICRNLSQVAAAEPIPGRPFQPPYLVIIDFGNPERARFAGRGALAPRLNDKDWQRMMEHIIALSTLAWQEYGVRAVIHPHAGGSIEFADEIERLANDIPHDVAGLCLDTGHLYYAGMDPLDWLDRYYHRLDYLHFKDVDPQVYQRAIHEGIDFFTACAKGVMCPLGSGAIDYPAIKDFLARRGYQGWITIEQERDPRHAAGSLQAVTESLRYLRDVGF

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Crispr_ID: NZ_CP047633_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047633_2

3614466-3614543

Orphan

Consensus_repeat	Method
TGCCGGGCGGCGGCTAACGCCTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047633_2

>merge|NZ_CP047633|2|3614466-3614543|CRISPRCasFinder
TGCCGGGCGGCGGCTAACGCCTTGCCCGGCCTACGGTGCTATTGCGCGGTTATTTTGCCGGGCGGCGGCTGACGCCTT

>NZ_CP047633|2|2|3614466-3614543|CRISPRCasFinder
TGCCGGGCGGCGGCTAACGCCTT	GCCCGGCCTACGGTGCTATTGCGCGGTTATTT
TGCCGGGCGGCGGCTGACGCCTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047633.1\|WP_023283460.1\|3603872_3604970_+\|two-component-system-sensor-histidine-kinase-PmrB	unknown	unknown	gnl\|CDD\|236751
NZ_CP047633.1\|WP_002895358.1\|3619926_3620652_-\|histidine-utilization-repressor	unknown	unknown	gnl\|CDD\|184961
NZ_CP047633.1\|WP_004147672.1\|3615091_3616474_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|182566
NZ_CP047633.1\|WP_004142100.1\|3609329_3610085_-\|malonyl-ACP-O-methyltransferase-BioC	unknown	unknown	gnl\|CDD\|182340
NZ_CP047633.1\|WP_004153329.1\|3621666_3622986_-\|imidazolonepropionase	unknown	unknown	gnl\|CDD\|236478
NZ_CP047633.1\|WP_002895580.1\|3611222_3612263_-\|biotin-synthase-BioB	unknown	unknown	gnl\|CDD\|185063
NZ_CP047633.1\|WP_040217512.1\|3605218_3607240_-\|excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
NZ_CP047633.1\|WP_004152853.1\|3607950_3608673_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223487
NZ_CP047633.1\|WP_004142122.1\|3623140_3624424_+\|putative-acyl-CoA-thioester-hydrolase	unknown	unknown	gnl\|CDD\|236709
NZ_CP047633.1\|WP_071004747.1\|3612476_3613766_+\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	unknown	unknown	gnl\|CDD\|181189
NZ_CP047633.1\|WP_002895648.1\|3608614_3609337_-\|ATP-dependent-dethiobiotin-synthetase-BioD	unknown	unknown	gnl\|CDD\|234625
NZ_CP047633.1\|WP_002895652.1\|3607651_3607864_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047633.1\|WP_004176804.1\|3610068_3611226_-\|8-amino-7-oxononanoate-synthase	unknown	unknown	gnl\|CDD\|235655
NZ_CP047633.1\|WP_160552414.1\|3618095_3619034_-\|urocanate-hydratase	unknown	unknown	gnl\|CDD\|235448
NZ_CP047633.1\|WP_002895575.1\|3613836_3614313_+\|kinase-inhibitor	unknown	unknown	gnl\|CDD\|182339
NZ_CP047633.1\|WP_004183465.1\|3627435_3627867_-\|universal-stress-protein	unknown	unknown	gnl\|CDD\|185353
NZ_CP047633.1\|WP_004147662.1\|3628400_3629486_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP047633.1\|WP_004179084.1\|3624696_3627384_-\|cation-transporting-P-type-ATPase	unknown	unknown	gnl\|CDD\|319775
NZ_CP047633.1\|WP_163622172.1\|3620713_3621670_-\|formimidoylglutamase	unknown	unknown	gnl\|CDD\|234974
NZ_CP047633.1\|WP_071004706.1\|3616572_3618099_-\|histidine-ammonia-lyase	unknown	unknown	gnl\|CDD\|236484

Protein	Function_ID	Function_description	E-value
NZ_CP047633.1\|WP_023283460.1\|3603872_3604970_+\|two-component-system-sensor-histidine-kinase-PmrB	gnl\|CDD\|236751	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB.	0
NZ_CP047633.1\|WP_002895358.1\|3619926_3620652_-\|histidine-utilization-repressor	gnl\|CDD\|184961	PRK14999, PRK14999, histidine utilization repressor; Provisional.	3.37417e-172
NZ_CP047633.1\|WP_004147672.1\|3615091_3616474_-\|amino-acid-permease	gnl\|CDD\|182566	PRK10580, proY, putative proline-specific permease; Provisional.	0
NZ_CP047633.1\|WP_004142100.1\|3609329_3610085_-\|malonyl-ACP-O-methyltransferase-BioC	gnl\|CDD\|182340	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional.	1.7976e-160
NZ_CP047633.1\|WP_004153329.1\|3621666_3622986_-\|imidazolonepropionase	gnl\|CDD\|236478	PRK09356, PRK09356, imidazolonepropionase; Validated.	0
NZ_CP047633.1\|WP_002895580.1\|3611222_3612263_-\|biotin-synthase-BioB	gnl\|CDD\|185063	PRK15108, PRK15108, biotin synthase; Provisional.	0
NZ_CP047633.1\|WP_040217512.1\|3605218_3607240_-\|excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_CP047633.1\|WP_004152853.1\|3607950_3608673_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223487	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism].	3.17026e-74
NZ_CP047633.1\|WP_004142122.1\|3623140_3624424_+\|putative-acyl-CoA-thioester-hydrolase	gnl\|CDD\|236709	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase.	0
NZ_CP047633.1\|WP_071004747.1\|3612476_3613766_+\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	gnl\|CDD\|181189	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated.	0
NZ_CP047633.1\|WP_002895648.1\|3608614_3609337_-\|ATP-dependent-dethiobiotin-synthetase-BioD	gnl\|CDD\|234625	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD.	4.52132e-105
NZ_CP047633.1\|WP_004176804.1\|3610068_3611226_-\|8-amino-7-oxononanoate-synthase	gnl\|CDD\|235655	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed.	0
NZ_CP047633.1\|WP_160552414.1\|3618095_3619034_-\|urocanate-hydratase	gnl\|CDD\|235448	PRK05414, PRK05414, urocanate hydratase; Provisional.	0
NZ_CP047633.1\|WP_002895575.1\|3613836_3614313_+\|kinase-inhibitor	gnl\|CDD\|182339	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional.	7.58373e-117
NZ_CP047633.1\|WP_004183465.1\|3627435_3627867_-\|universal-stress-protein	gnl\|CDD\|185353	PRK15456, PRK15456, universal stress protein UspG; Provisional.	1.69931e-44
NZ_CP047633.1\|WP_004147662.1\|3628400_3629486_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	6.18674e-67
NZ_CP047633.1\|WP_004179084.1\|3624696_3627384_-\|cation-transporting-P-type-ATPase	gnl\|CDD\|319775	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp. PCC 6803 PMA1, a putative Ca(2+)-ATPase. This subfamily includes the P-type Na(+)-ATPase of an alkaliphilic bacterium Exiguobacterium aurantiacum Mna and cyanobacterium Synechocystis sp. PCC 6803 PMA1, a cation-transporting ATPase which may translocate calcium. The P-type ATPases, are a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NZ_CP047633.1\|WP_163622172.1\|3620713_3621670_-\|formimidoylglutamase	gnl\|CDD\|234974	PRK01722, PRK01722, formimidoylglutamase; Provisional.	5.53194e-178
NZ_CP047633.1\|WP_071004706.1\|3616572_3618099_-\|histidine-ammonia-lyase	gnl\|CDD\|236484	PRK09367, PRK09367, histidine ammonia-lyase; Provisional.	0

>NZ_CP047633.1|WP_002895575.1|3613836_3614313_+|kinase-inhibitor
MKLISHDLQDGGKLPNRHVFNGMGYDGDNISPHLMWDDVPAGTKSFVVTCYDPDAPTGSGWWHWVVANLPADTRVLPQGAGSGQAELPEEAVQTRTDFGKAGYGGAAPPKGETHRYIFTVHALDVEKIEVDAEASGAMVGFNVHFHSLASASITALFS
>NZ_CP047633.1|WP_071004747.1|3612476_3613766_+|adenosylmethionine--8-amino-7-oxononanoate-transaminase
MTLDDLAFDRRHIWHPYTSMTSPLPVYPVVSAHGCELSLAGGEQLVDGMSSWWAAIHGYNHPRLNAALKGQIDQMSHVMFGGITHPPAVALCRQLVAMTPASLECVFLADSGSVAVEVAMKMALQYWQAKGEPRRRFLTFRNGYHGDTFGAMSVCDPQNSMHSLWQGYLPDNLFAPAPQSRFDGEWDEMDMVPFARLMAAHRHEIAAVILEPIVQGAGGMRMYHPEWLKRVRKMCDREGILLIADEIATGFGRTGKLFACEHAGITADILCLGKALTGGTMTLSAAITTRTVAETISNGEAGCFMHGPTFMGNPLACAVASESLRLLESGEWQPQVAAIEAQLQAELAPARRSALVADVRVLGAIGVVETRRPVNMATLQRFFVEQGVWIRPFGRLIYLMPPYIITPEQLTRLTRAVNQAVQDETFFSE
>NZ_CP047633.1|WP_002895580.1|3611222_3612263_-|biotin-synthase-BioB
MAHQPRWTMSQVTELFNKPLIDLLFEAQQIHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSARYKTGLEAERLMEVEQVLESARQAKNAGSTRFCMGAAWKNPNDRDMPYLEQMVKGVKALGLESCMTLGTLTDSQAQRLAEAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLDKVRDAGIKVCSGGIVGLGESVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAIARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGINPQQTAVLEGDNEQQQRLEQALLTPDTEEYYNAAAL
>NZ_CP047633.1|WP_004176804.1|3610068_3611226_-|8-amino-7-oxononanoate-synthase
MSWQQRIDRALDERRAAEAFRRRLPVTHGAGRWLEREGERWLNFSSNDYLGLSQHPAIIAAWQQGATRYGVGAGGSGHVSGYSEAHRALEEALADWLGYPRALLFISGFAANQALIAALVEKDDRIVADRLSHASLLEAASLSPAQLRRFTHNDPQQLAQLLAKPLAGEQLAVTEGIFSMDGDSAPLAAIHAATQAAGAVLLVDDAHGVGVVGDEGRGSCAAQAVRPELLVVTFGKAFGVSGAAVLCDEAMADYLLQFARHLIYSTAMPPAQAVALSAALGIIRSDEGQQRRDILAARIRQFREGMGEVSLGLTDSVSAIQPLIVGDNARALNLACRLRDAGCWATAIRPPTVPVGSARLRLTLTAAHHAEDINRLLEVLHGHSE
>NZ_CP047633.1|WP_004142100.1|3609329_3610085_-|malonyl-ACP-O-methyltransferase-BioC
MATVNKQAVAAAFGRAASGYTQHDELQRRCADLLLRQLARRDFAQVLDAGCGPGSMSRYWREAGSVVTALDLSAGMLAQAQRNDAAQHYLLGDIEALPLPDACVDLAWSNLAVQWCDDLRAAIGELYRVARPGGRVAFSTLLADSLPELNQAWQAIDDRPHANRFLSEAAVRAALSGLRATGEVHQISLPFADALSAMRSLKGIGATHLHQGRTAAPLGRGKLRELQLAWPQRQGICPLTYSLFTGVIERD
>NZ_CP047633.1|WP_002895648.1|3608614_3609337_-|ATP-dependent-dethiobiotin-synthetase-BioD
MTKRFFVTGTDTEVGKTIASSALLQAANLLGFHTAGYKPVASGSELTGDGLRNEDALALQRHSRVALRYDQVNPYTFAEPTSPHIISADEGRPIAAARLSSGLRELEGLADWVLVEGAGGWFTPLSDSLTFADWAQAEQLPVILVVGVKLGCINHAMLTAQAVRQAGLPLAGWIANDVQPPGKRHAEYLATLKNRLAAPFLGEIPWLADIAQRDDLGQYLDLRALDPALSTAPAAAHPAP
>NZ_CP047633.1|WP_004152853.1|3607950_3608673_+|ATP-binding-cassette-domain-containing-protein
MLNLQAVNHFYGNQHSLWNVDLVLRPGECIGVLGREGMGKTTLVNCIAGHLPVASGRMTWHDIGAPPQDLTPLSAQSRSAIGIGYVPQDKRIFSQLSVEENLHIALAAGKPGANASGGEIYEHFPELYALRQRKGASLSDDDQYQLALARALIVQPRLLILDEPSRGRGPRCLQKLADLLLRLNRDIGLTVLLAEQHLPFIRRVADRFCVLHRGRNVAEGDIMALDEPLLAQWITPDPAP
>NZ_CP047633.1|WP_002895652.1|3607651_3607864_+|hypothetical-protein
MDNCPQPKTTAARRLSPFAVNRVAKNFYRTIFDNYPLKAARFLLLFAPPFSVGHRKSAAPALTRPDGIGV
>NZ_CP047633.1|WP_040217512.1|3605218_3607240_-|excinuclease-ABC-subunit-B
MSKSFVLHSAFRPSGDQPEAIRHLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQYTRNDQAFQRGTFRVRGEVIDVFPAESDDIALRIELFDEEVERLSLFDPLTGHVEGTVPRYTIYPKTHYVTPRERIVQAMEEIKLELAERRKVLLANNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVIDESHVTVPQIGGMYRGDRARKETLVEYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPGAYELDKSGGEVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRLRTAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQRYNEEHGIVPQGLNKKVVDILQLGQGLAKTKAKGRGKAKAVEPAGLSAVDMTPKALQQKIHELEGQMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS
>NZ_CP047633.1|WP_023283460.1|3603872_3604970_+|two-component-system-sensor-histidine-kinase-PmrB
MALFATETWTMRHRLLLTIGAILVVCQLISVFWLWHESKEQIQLLVASAIEGHNNQKHVEHEVREAVASLLVPSLLIVGLALYISMLAVRKITRPLSRLQSELENRTPDNLTPIVLSESVPEVTAVTTALNQLVSRLNLTLDRERLFTADVAHELRTPLAGLRLHLELLAKVHGMGVDPLIQRLDQMTTSISQLLQLARVGQSFSAGSYQQVLLLDDVVKPLQDELEAMLAQRQQRLLLTDIENEAVVSGDATLIRVILRNLVENAHRYSPEGSTIRVSVKAGLLPVMAVEDEGPGIDEAKSGELSKAFVRMDSRYGGIGLGLSIVTRIAQLHDAQFFLHNRQPGPGVRAWVLFPQRGGQNVSTH
>NZ_CP047633.1|WP_004147672.1|3615091_3616474_-|amino-acid-permease
MQQQHKPHLLRGLNARHIRFIALGSAIGTGLFYGSASAIKAAGPAVLLAYLIGGAAVFIVMRALGEMAVRNPVSGSFGSYARQYLGPLAGFITGWTYTFEMVIVALADVTAFGIYMGLWYPDVPRWIWILSIIFFIGAMNLCNVRVFGEMEFWLSLVKVVAIIAMMLAGAGIIFFGFGHSFPATGLENLWSHGGFAPNGWQGVIASLGIVMFAFGGVEIIGVTAAEAKDPKKVIPQAINTIPLRIILFYVCTLAVLMAIFPWNSFGEQGSPFVLIFDGLGIPAAATILNIIVISASISAINSDIFGAGRMMYGMSKEGLAPKSFQRIASNGVPWMTVVVMGGALLAAVVLNYLIPEQVFVLIASLAAFATVWVWLMILLSHFAMRRGLSAEERSQIAFPIPFWPVAPLLTLLFMGLVIAVLGMFAETRMALIAGLVWLGLLTVVWYARVRKTALQVATEQ
>NZ_CP047633.1|WP_071004706.1|3616572_3618099_-|histidine-ammonia-lyase
MKSLTLIPGQLSLSQLRDIYSHPVNITLDSGAFAAIDESVACVNAILAEGRTAYGINTGFGLLAQTRISTEDLENLQRSLVLSHAAGVGEPLDDDLARLIMVLKINSLSRGFSGIRLSVIQALIGLVNAGVTPWIPAKGSVGASGDLAPLAHMSLTLLGEGKARVRGGDWLPATEALRQVGLEPITLAAKEGLALLNGTQASTAFALRGLFEAEDLFASAVVCGALTTEAALGSRRPFDARIHEVRGQRGQIDAAALYRHLLTDDSAISQSHHNCSKVQDPYSLRCQPQVMGACLTQIRQAAEVLLAEANAVSDNPLVFAAENDVISGGNFHAEPVAMAADNIALAIAEIGSLSERRIALMMDSHMSQLPPFLVKNGGVNSGFMIAQVTAAALASENKALSHPHSIDSLPTSANQEDHVSMAPAAGRRLWAMAENTRGVLAVEWLAAAQGLDMREGLTTSPLLEEARHLLRERVPHYTQDRYFAPDIDNAIALLAARHLTRLLPAVLH
>NZ_CP047633.1|WP_160552414.1|3618095_3619034_-|urocanate-hydratase
MKRGVRPDMVTDQTSAHDPLHGYLPKGWSWEEYQQKAESDPQGTILAAKRSMADHVQAMLAFHEMGVPTFDYGNNIRQMAQEVGVSNAFDFPGFVPAYIRPLFCRGIGPFRWVALSGDPQDIYKTDAKVKEIIKDDQHLHHWLDMARERISFQGLPARICWVGLEWRQKLGLAFNEMVRSGEVSAPIVIGRDHLDSGSVASPNRETEAMRDGSDAVSDWPLLNALLNTASGATWVSLHHGGGVGMGFSQHSGMVIVCDGTDEAAARIARVLRNDPATGVMRHADAGYEIAIECAAEQGLNLPMVAATQGNAK
>NZ_CP047633.1|WP_002895358.1|3619926_3620652_-|histidine-utilization-repressor
MFAQQPRSAPAPFYEKVKQAISEKIHSGVWRPHDRIPSEAELVAQFGFSRMTINRALRELTDEGLLVRLQGVGTFVAEPKGQSALFEVRSIAAEIVARHHQHRCEVLLLEETRADHIQATALSVPEGTRIFHSLMVHYENEVPVQIEDRCVNAAVVPDYLHQDYTATTPHDYLSLIAPLTEGEHIVEAVQATAEECALLHIHAHDPCLLIRRRTWSTTHIVSHARLLFPGSRYRLQGRFGS
>NZ_CP047633.1|WP_163622172.1|3620713_3621670_-|formimidoylglutamase
MMLWQATPASLWQGRDDSAEASNALRLFQTIARAERFAPQEMPGDIALLGFACDEGVRRNKGRTGAADGPATLRRALANMASHQGHDRCVDMGTISVDGEQLEAAHQALREAVADCQRAGKRTLVLGGGHETAFGHGAGVLDAFPGEKVGIINLDAHLDLRFAECASSGTPFRQLALECDAQQRGFHYTCIGVSRAANTQALWDEAARRQVAIIEDLEVLTAFETRVLPELERNIAQFDRLYLTIDLDVLPAREMPAVSAPAALGVPLGTLLRIVEPLCRSGKLQAVDLVEFNPLFDIDGQGARAAARVAWQIAHWWR
>NZ_CP047633.1|WP_004153329.1|3621666_3622986_-|imidazolonepropionase
MVFSHKKITFPCAIVDFTGVMKINVYTTHDKLSAMTEATSELVIWRNGRLATLNPDHAQPYGLLERHALLVRDGRIAAIVAEDDVPSGRSIDLEGRLVTPGLIDCHTHLVFGGSRAQEWEQRLNGVSYQTISASGGGINSTVRATRDSSEAELLALAQPRLERLLREGVTTLEIKSGYGLDLPNERKMLRVARQLADHNGVELSATLLSAHATPPEYQGDADGYITLVCETILPTLWQEGLFESVDVFCENVGFSPQQTERVFQAAQALGIPVKGHVEQLSSLGGAQLVSRYHGLSADHIEYLTEEGVAAMRESGTVAALLPGAFYFLNETRKPPVELLRKYQVPMAVATDFNPGTSPFASLHLAMNMACVKFGLTPEEAWAGVTRHAARALGRQASHGQLAPGFVANFAIWDAEHPVEMVYEPGRSPLWHRVVQGELQ
>NZ_CP047633.1|WP_004142122.1|3623140_3624424_+|putative-acyl-CoA-thioester-hydrolase
MNTYSVSRLALALAFGVTLSACSSTPADQQPSTQTAPGTTARPILNAEEAKNFTPAAYFQSLAPNAAAWTPSAISLPAQPDFIVGPAGTQGVTHTTIQAAVDAAIARHSNRRLYIAIMPGEYPGTVYVPAAPGALTLYGTGDKPIDVKISEAIDSEMDRNTWRRLVNPGGKYMPGKPAWYMFDSCQSKSAATVGVMCSAVFWSQNNGLQLQNLTIANNLGDSVDAGTHQAVALRSDGDQVQINKVNILGRQNTFFVTNSGVQNRLQDNRQTRTLVTNSYIEGDVDIVSGRGAVVFDNTDFRVVNSRTQKEAYVFAPATLKSVTYGFLATNSRFTASGDNVAQLGRALDVDGNSNGQVVIRDSAINEGFNIAQPWAAAVGSGRPFSGNTGSADDKGNLQRNLNDNGFNRMWEYNNRGVGSTVVAEPKQ
>NZ_CP047633.1|WP_004179084.1|3624696_3627384_-|cation-transporting-P-type-ATPase
MNTDKPGAPYYQRSVEETLASVQSSPEGISGTEAATRLQQYGENALPQKPGKPAWLRFIAHFNDVLIYVLLAAALLKAVMGHWIDMAVILAVAVVNALIGFIQESNAEKSLQSIRNMLSSEAVAIRQGNHETIPTTSLVPGDIVVIRAGDRIPADLRVIEAHNLRVEEAILTGESTVVEKTTEPLSGDLPLGDRSNLLFSGTTVSSGAGKGIVVATGGDTELGHINQMMAGIEKHRTPLLVQMDKLGKAIFILILVMMAALFVFSLLFRDMPVSELMLSLISLAVASVPEGLPAIISIILSLGVQAMARQKAIIRKLPTVETLGAMTVICSDKTGTLTMNEMTVKAVITADSVYRVEGDSYEPVGKIHAIDDPTPVTIAPGSLFERYLRTIDLCNDSQLIKEESGLWKITGGPTEGALKVLAAKVTLPPLTSELRSKIPFDSQYKYMSTLYRLGEEEVVLVTGAPDVLFRLCQYQQSDSGLQPLDLPYWEGKIEEYAREGLRMVAAAWKPAAAGQTELTHQDLQQGVILLGVAGMMDPPRPEAITAIADCLQAGIRVKMITGDHPQTAMSIGKMLGIGNAGNAITGRELEVMDDAQLSVAAQQFDIFARTSPEDKFRLVQALQSKKEIVGMTGDGVNDAPALKQADVGVAMGIKGTEVTKEAADMVLTDDNFATIASAVREGRRVYDNLKKTILFVMPTNLAQGLLIVIALLAGNVLPLTPVLILWMNMATSATLSFGLAFEAGEKNIMRRPPRDPKIHVMDGFAIWRVAFVGSMIAVSAFILEAWLQPRGYSPEFIRTVLLQTLVTAQWFYMLNCRVSDGFSLTKGLLANKGIWIVSGVLLLLQLLIIYAPFMQMLFGTTGLPFRYWVITFIIGFAMFLIVELEKPLTRKWRSA
>NZ_CP047633.1|WP_004183465.1|3627435_3627867_-|universal-stress-protein
MYKNIVVPVDVFDAGLADKALSHAKFLAQHSAGQIHLIHVIPAFSPVLTRGFISDARKMEDHLLNTAKEKLSELVKKNGLAEDASHLYVRSGNVRDQVIALADELKADVVIVGSRNPGIQTHLLGSEAANIVRYAHVPVFVVR
>NZ_CP047633.1|WP_004147662.1|3628400_3629486_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MNRYFSLIPVVIIFTTACDQKAPTVESAPRMVKVAQVTAVGNTQQRTFPARIESGDSTELSFKRGGQVESLDIRQGASVAQGQTLARLNAREAQQRVNERQTAATLAQRQFDRFQTLAGRQAISQAEMDVQRANRDAANAALKIAREELAQMSLIAPFSGIAAGVHIRNHQVVAAGQPVITLTRTDLLDVVFSIPENLFTSLDIRNTAYRPVVRINTLPGREFTAEYKEHTGSSDNSTLTWQIVLTMPRPDDFPAVGGVSGTVTVNLGNLPASAGRETLIVPAEAVFNPDNRPKNEPVVWVVKGDNAHRYLEERKVTVGEVTSQGVAITDGLRAGEQVVAAGVSELHAGQPVRVWTRERGL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1194851 : 1242274

Klebsiella_phage(73.58%)

holin,terminase,protease,portal,head,transposase,tail,capsid

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_101982967.1\|1194851_1195962_+\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	1.7e-06	25.6
WP_023301568.1\|1196206_1196836_-	TIGR02646 family protein	NA	NA	NA	NA
WP_023301569.1\|1196832_1198425_-	AAA family ATPase	C7BGE8	Burkholderia_phage	4.1e-14	32.5
WP_023301570.1\|1198402_1199368_-	RNA-directed DNA polymerase	NA	NA	NA	NA
WP_023304981.1\|1202061_1202880_-	hypothetical protein	I6PD67	Cronobacter_phage	2.5e-140	90.4
WP_023304980.1\|1202883_1203132_-	hypothetical protein	I6PCV4	Cronobacter_phage	1.6e-29	85.4
WP_040224668.1\|1203382_1204561_-	DUF3596 domain-containing protein	I6PDJ1	Cronobacter_phage	2.4e-205	91.3
WP_032422780.1\|1204515_1204728_-	hypothetical protein	I6PBM8	Cronobacter_phage	1.2e-25	76.1
WP_060184394.1\|1204846_1205365_-	hypothetical protein	A0A286S1S7	Klebsiella_phage	1.9e-93	98.3
WP_110192604.1\|1205405_1205846_-	hypothetical protein	A0A286S1S2	Klebsiella_phage	8.6e-63	83.6
WP_163622354.1\|1205842_1205965_-	hypothetical protein	A0A286S1P6	Klebsiella_phage	1.8e-15	95.0
WP_163621864.1\|1206032_1206287_-	hypothetical protein	A0A286SGR4	Klebsiella_phage	2.1e-37	92.8
WP_004218017.1\|1206279_1206441_-	hypothetical protein	A0A286S1Q6	Klebsiella_phage	1.5e-20	96.2
WP_004152159.1\|1206814_1207003_-	hypothetical protein	A0A286S1P8	Klebsiella_phage	4.6e-26	100.0
WP_163621865.1\|1206995_1207310_-	hypothetical protein	A0A286S1T9	Klebsiella_phage	2.9e-49	99.0
WP_004152161.1\|1207479_1208148_-	LexA family transcriptional regulator	A0A286S2B2	Klebsiella_phage	2.4e-125	99.5
WP_004152162.1\|1208245_1208467_+	helix-turn-helix transcriptional regulator	A0A286S2C1	Klebsiella_phage	3.0e-32	100.0
WP_117102964.1\|1209045_1210704_+	DEAD/DEAH box helicase	A0A286N2P9	Klebsiella_phage	0.0e+00	98.7
WP_163621867.1\|1210705_1211668_+	DNA primase	A0A286N2Q0	Klebsiella_phage	4.5e-181	97.8
WP_004198239.1\|1211664_1212141_+	hypothetical protein	A0A286N2Q1	Klebsiella_phage	1.8e-90	100.0
WP_032452130.1\|1212213_1212615_+	antitermination protein	S5M7R9	Escherichia_phage	2.7e-31	50.4
WP_004184721.1\|1212731_1212989_+	hypothetical protein	A0A286N2Q3	Klebsiella_phage	1.3e-42	100.0
WP_031280381.1\|1212894_1213341_-	hypothetical protein	NA	NA	NA	NA
WP_024940884.1\|1213949_1214249_+\|holin	holin	A0A286N2Q5	Klebsiella_phage	4.5e-47	100.0
WP_004184488.1\|1214245_1214785_+	glycoside hydrolase family 108 protein	A0A286N2Q6	Klebsiella_phage	2.3e-102	100.0
WP_016946315.1\|1214781_1215126_+	hypothetical protein	A0A286N2Q7	Klebsiella_phage	5.7e-38	79.8
WP_023341464.1\|1215122_1215398_+	hypothetical protein	G8C7W1	Escherichia_phage	7.8e-14	48.3
WP_017880217.1\|1216356_1216602_+	DUF2560 family protein	A0A286N2R1	Klebsiella_phage	1.8e-14	54.3
WP_023301206.1\|1216673_1216880_+	DUF551 domain-containing protein	A0A286N2R2	Klebsiella_phage	5.1e-34	97.1
WP_017880218.1\|1216951_1217242_+	HNH endonuclease	A0A286N2R3	Klebsiella_phage	1.4e-53	99.0
WP_017880219.1\|1217254_1217464_+	hypothetical protein	A0A286N2R4	Klebsiella_phage	7.0e-31	100.0
WP_004143905.1\|1217585_1218020_+	hypothetical protein	A0A286S1P9	Klebsiella_phage	6.2e-74	100.0
WP_163621869.1\|1218029_1219562_+\|terminase	terminase	A0A286S1M9	Klebsiella_phage	5.1e-296	99.8
WP_017880221.1\|1219564_1220842_+\|portal	phage portal protein	A0A286S1N5	Klebsiella_phage	6.2e-247	100.0
WP_077254200.1\|1220847_1221528_+\|head,protease	HK97 family phage prohead protease	A0A286S1N1	Klebsiella_phage	6.0e-124	99.6
WP_058842800.1\|1221539_1222703_+\|capsid	phage major capsid protein	A0A286S1R4	Klebsiella_phage	3.1e-213	100.0
WP_044067369.1\|1222739_1222982_+	hypothetical protein	NA	NA	NA	NA
WP_017880223.1\|1222929_1223256_+\|head,tail	phage gp6-like head-tail connector protein	A0A286S294	Klebsiella_phage	7.5e-56	100.0
WP_004143899.1\|1223316_1223514_+	hypothetical protein	A0A286S2A5	Klebsiella_phage	1.7e-26	100.0
WP_004184710.1\|1223515_1223848_+\|head	phage head closure protein	A0A286S2A2	Klebsiella_phage	3.1e-57	100.0
WP_000763233.1\|1223840_1224380_+	HK97 gp10 family phage protein	A0A286S249	Klebsiella_phage	1.0e-94	100.0
WP_163621871.1\|1224376_1224742_+	DUF3168 domain-containing protein	A0A286S1R1	Klebsiella_phage	1.1e-60	91.7
WP_000115125.1\|1224798_1225290_+	hypothetical protein	A0A286S1Q8	Klebsiella_phage	2.3e-88	100.0
WP_004899623.1\|1225333_1225717_+	hypothetical protein	A0A286S1N4	Klebsiella_phage	1.4e-53	86.3
WP_004899621.1\|1225719_1225983_+	hypothetical protein	A0A286S1P2	Klebsiella_phage	7.9e-40	90.8
WP_004899620.1\|1226046_1226424_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_058842798.1\|1226485_1229032_+\|tail	phage tail tape measure protein	A0A286S1S3	Klebsiella_phage	0.0e+00	74.6
WP_004899614.1\|1229031_1229511_+	hypothetical protein	A0A286S298	Klebsiella_phage	1.7e-93	98.7
WP_032412796.1\|1229497_1229980_+	DUF1833 family protein	A0A286S2B1	Klebsiella_phage	1.6e-83	96.9
WP_017880229.1\|1229989_1230370_+	hypothetical protein	A0A286S2A6	Klebsiella_phage	4.6e-73	100.0
WP_163621873.1\|1230366_1233435_+	kinase	A0A286S259	Klebsiella_phage	0.0e+00	97.6
WP_163621875.1\|1233511_1235401_+	hypothetical protein	A0A2H4N7A3	Pectobacterium_phage	1.5e-148	52.8
WP_142290973.1\|1235400_1236210_+	hypothetical protein	NA	NA	NA	NA
WP_102008088.1\|1236254_1237037_-	hypothetical protein	A0A2H4YHE3	Raoultella_phage	7.9e-19	30.9
WP_117252722.1\|1237026_1239219_-	hypothetical protein	A0A2H4YH15	Raoultella_phage	1.2e-96	39.8
WP_064185091.1\|1239310_1239859_+	recombinase family protein	A0A286S1P7	Klebsiella_phage	5.4e-91	95.6
WP_074194671.1\|1239936_1240359_+	hypothetical protein	K7P834	Enterobacteria_phage	1.2e-24	43.8
WP_023313495.1\|1240766_1241015_-	DinI-like family protein	S5MQI1	Escherichia_phage	1.4e-25	69.1
WP_002914164.1\|1241791_1242274_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	2.3e-29	47.4

DBSCAN-SWA_2

1693660 : 1700565

Planktothrix_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004180551.1\|1693660_1694524_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-10	27.5
WP_004180550.1\|1694534_1695308_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.9e-26	36.7
WP_004151134.1\|1695548_1696445_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
WP_004144192.1\|1696687_1698049_-\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	1.8e-207	94.8
WP_004175198.1\|1698367_1699090_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
WP_004149058.1\|1699086_1700565_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	8.5e-30	28.3

DBSCAN-SWA_3

2754075 : 2763489

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_160333886.1\|2754075_2755710_+	DUF4981 domain-containing protein	L0N6M2	Herpes_simplex_virus	3.1e-182	55.8
WP_085903426.1\|2755764_2757030_+	MFS transporter	NA	NA	NA	NA
WP_032431771.1\|2757060_2758149_-	AAA family ATPase	A0A077SLJ9	Escherichia_phage	1.2e-209	99.7
WP_004183954.1\|2758235_2758496_-	hypothetical protein	A0A077SK33	Escherichia_phage	3.5e-40	97.7
WP_023282555.1\|2758793_2759654_+	class A extended-spectrum beta-lactamase SHV-27	A0A077SL40	Escherichia_phage	2.9e-155	99.3
WP_002210513.1\|2759674_2760436_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_002903955.1\|2760696_2761599_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
WP_004190239.1\|2761610_2762876_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	3.9e-233	99.5
WP_002210516.1\|2762868_2763489_+	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0

DBSCAN-SWA_4

3154191 : 3239199

Klebsiella_phage(50.0%)

holin,terminase,tRNA,integrase,portal,head,tail,capsid

attL 3194569:3194584|attR 3242886:3242901

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002901088.1\|3154191_3154692_+\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
WP_002901080.1\|3154808_3155255_+	DUF441 domain-containing protein	NA	NA	NA	NA
WP_004224197.1\|3155238_3156033_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_020324105.1\|3156140_3157316_+	CynX/NimT family MFS transporter	NA	NA	NA	NA
WP_004140471.1\|3157347_3158040_-	CTP synthase	NA	NA	NA	NA
WP_004176547.1\|3158185_3158695_+	DUF523 domain-containing protein	NA	NA	NA	NA
WP_014343000.1\|3158699_3159038_+	DUF488 family protein	NA	NA	NA	NA
WP_004179368.1\|3159027_3159267_-	DUF333 domain-containing protein	NA	NA	NA	NA
WP_004176549.1\|3159568_3160582_+	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.9e-12	29.0
WP_004150782.1\|3160639_3160741_+	YoaK family small membrane protein	NA	NA	NA	NA
WP_004213093.1\|3160740_3160815_+	protein YoaJ	NA	NA	NA	NA
WP_004140488.1\|3160932_3161058_+	hypothetical protein	NA	NA	NA	NA
WP_004140489.1\|3161117_3161381_-	DUF2534 family protein	NA	NA	NA	NA
WP_004150783.1\|3161511_3162150_-	leucine efflux protein LeuE	NA	NA	NA	NA
WP_004148038.1\|3162239_3163154_-	kdo(2)-lipid IV(A) palmitoleoyltransferase	A0A1W6JP29	Morganella_phage	1.1e-72	50.4
WP_004148037.1\|3163615_3163735_-	hypothetical protein	NA	NA	NA	NA
WP_004892909.1\|3163815_3164859_-	type II asparaginase	NA	NA	NA	NA
WP_004140494.1\|3165161_3166370_+	HD domain-containing protein	NA	NA	NA	NA
WP_029602490.1\|3166443_3168228_+	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	2.6e-17	38.5
WP_004150788.1\|3168234_3169125_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004140497.1\|3169245_3170754_+	UbiD family decarboxylase	NA	NA	NA	NA
WP_004150789.1\|3170787_3170952_+	hypothetical protein	NA	NA	NA	NA
WP_004150790.1\|3171064_3171751_-	EAL domain-containing protein	NA	NA	NA	NA
WP_004140501.1\|3172148_3172328_-	hypothetical protein	NA	NA	NA	NA
WP_004150791.1\|3172367_3173000_-	DNA-binding protein	NA	NA	NA	NA
WP_004140506.1\|3173566_3173764_+	hypothetical protein	NA	NA	NA	NA
WP_004140509.1\|3173879_3174890_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_004140511.1\|3174886_3176293_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_004179357.1\|3176348_3177236_-	manganese catalase family protein	NA	NA	NA	NA
WP_004140514.1\|3177252_3177759_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_004148027.1\|3177785_3178280_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_004150795.1\|3178370_3178556_-	general stress protein	NA	NA	NA	NA
WP_032104012.1\|3178775_3178928_+	hypothetical protein	NA	NA	NA	NA
WP_004140529.1\|3179177_3180371_+	glutathione-dependent formaldehyde dehydrogenase	NA	NA	NA	NA
WP_004140530.1\|3180483_3180711_+	DUF1272 domain-containing protein	NA	NA	NA	NA
WP_004150797.1\|3181160_3181484_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_004190914.1\|3181476_3181869_+	hypothetical protein	NA	NA	NA	NA
WP_004140538.1\|3181865_3182579_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004892953.1\|3182851_3183004_-	isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-18	92.0
WP_130947227.1\|3183653_3184346_-	EAL domain-containing protein	NA	NA	NA	NA
WP_004224164.1\|3184700_3185759_-	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	2.1e-14	31.7
WP_014907806.1\|3186182_3187610_-\|tail	tail fiber domain-containing protein	A0A0P0IDN1	Klebsiella_phage	3.0e-101	55.5
WP_085205460.1\|3187678_3200383_-	DUF1983 domain-containing protein	Q6UAW1	Klebsiella_phage	0.0e+00	49.0
3194569:3194584	attL	NA	NA	NA	NA
WP_130947225.1\|3200445_3201051_-\|tail	tail assembly protein	Q6UAW2	Klebsiella_phage	8.4e-77	71.8
WP_031280393.1\|3201102_3201438_-	hypothetical protein	Q6UAW3	Klebsiella_phage	2.1e-21	44.1
WP_070550333.1\|3201473_3202184_-	peptidase P60	Q6UAW4	Klebsiella_phage	6.5e-137	90.3
WP_070550332.1\|3202185_3202941_-\|tail	phage minor tail protein L	Q6UAW5	Klebsiella_phage	6.1e-125	80.5
WP_017898999.1\|3202937_3203276_-\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	2.4e-57	88.4
WP_070550331.1\|3203275_3206611_-\|tail	phage tail tape measure protein	Q6UAW7	Klebsiella_phage	0.0e+00	87.5
WP_071603425.1\|3206610_3206823_-	hypothetical protein	Q6UAW9	Klebsiella_phage	3.7e-32	88.9
WP_014228914.1\|3206843_3207209_-\|tail	phage tail protein	Q6UAW8	Klebsiella_phage	1.6e-51	89.3
WP_014228913.1\|3207266_3207728_-\|tail	major tail shaft subunit	Q6UAX0	Klebsiella_phage	7.8e-67	83.7
WP_021462608.1\|3207759_3208161_-	hypothetical protein	Q6UAX1	Klebsiella_phage	1.1e-61	93.2
WP_130947223.1\|3208157_3208547_-	hypothetical protein	Q6UAX2	Klebsiella_phage	9.0e-56	84.5
WP_014228910.1\|3208527_3208866_-\|head,tail	head-tail adaptor protein	Q6UAX3	Klebsiella_phage	5.6e-54	91.1
WP_020317538.1\|3208862_3209180_-\|head,tail	phage gp6-like head-tail connector protein	Q6UAX4	Klebsiella_phage	1.5e-45	89.8
WP_014228908.1\|3209160_3209421_-	hypothetical protein	Q6UAX5	Klebsiella_phage	1.6e-21	60.5
WP_014228907.1\|3209479_3210766_-\|capsid	phage major capsid protein	Q6UAX6	Klebsiella_phage	4.4e-216	89.3
WP_048332996.1\|3210843_3211764_-	S49 family peptidase	Q6UAX7	Klebsiella_phage	1.6e-148	87.9
WP_023279520.1\|3211800_3213060_-\|portal	phage portal protein	Q6UAX8	Klebsiella_phage	1.8e-222	89.8
WP_020318187.1\|3213059_3213239_-	hypothetical protein	Q6UAX9	Klebsiella_phage	6.8e-11	57.9
WP_014228904.1\|3213232_3214954_-\|terminase	terminase large subunit	Q7Y413	Yersinia_phage	7.2e-190	57.2
WP_012542168.1\|3214953_3215388_-\|terminase	phage terminase small subunit P27 family	A0A1J0GV10	Halomonas_phage	9.4e-30	61.9
WP_032418043.1\|3215637_3216066_-	hypothetical protein	Q6UAS0	Klebsiella_phage	1.8e-41	61.3
WP_014228902.1\|3216065_3216383_-	hypothetical protein	NA	NA	NA	NA
WP_032431034.1\|3216334_3216697_-	HNH endonuclease	Q6UAS2	Klebsiella_phage	3.4e-57	82.5
WP_023317951.1\|3216680_3216842_-	hypothetical protein	NA	NA	NA	NA
WP_044612772.1\|3216923_3217400_-	DUF2514 domain-containing protein	NA	NA	NA	NA
WP_023317949.1\|3217432_3217963_-	lysozyme	G9L6J6	Escherichia_phage	9.6e-85	84.4
WP_004111739.1\|3217940_3218177_-\|holin	holin	A5LH82	Enterobacteria_phage	4.0e-27	82.6
WP_117264024.1\|3219079_3220255_+	hypothetical protein	NA	NA	NA	NA
WP_080782660.1\|3220257_3221481_+	hypothetical protein	NA	NA	NA	NA
WP_117264025.1\|3221451_3221808_-	antitermination protein	A0A0P0ZCW0	Stx2-converting_phage	2.2e-56	89.4
WP_101880957.1\|3221820_3222852_-	DUF968 domain-containing protein	S5MW46	Escherichia_phage	4.7e-96	49.6
WP_163622133.1\|3223051_3223444_-	DNA-binding protein	K7PHB4	Enterobacterial_phage	8.0e-12	36.6
WP_071785642.1\|3223484_3223724_-	hypothetical protein	H6WRY6	Salmonella_phage	1.5e-16	58.6
WP_048297249.1\|3223786_3224020_-	DinI family protein	K7PM44	Enterobacteria_phage	2.6e-26	73.7
WP_046622340.1\|3225521_3225725_-	hypothetical protein	A0A2R2Z313	Escherichia_phage	1.8e-20	68.2
WP_080922563.1\|3225721_3225985_-	DUF977 family protein	NA	NA	NA	NA
WP_130947222.1\|3225987_3226428_-	PerC family transcriptional regulator	NA	NA	NA	NA
WP_102047638.1\|3226441_3226906_-	replication protein	A0A0U2JGJ0	Escherichia_phage	1.3e-61	69.5
WP_130947221.1\|3226898_3227882_-	hypothetical protein	A0A0U2RT81	Escherichia_phage	2.8e-45	55.8
WP_017898969.1\|3227933_3228488_-	hypothetical protein	NA	NA	NA	NA
WP_004147982.1\|3228490_3228712_-	Cro/Cl family transcriptional regulator	H6WRX5	Salmonella_phage	1.2e-28	75.3
WP_064323694.1\|3228847_3229237_+	transcriptional regulator	H6WRX4	Salmonella_phage	2.5e-37	62.6
WP_117255494.1\|3230052_3230247_+	DUF1482 family protein	NA	NA	NA	NA
WP_014228879.1\|3230289_3230634_+	transcriptional regulator	NA	NA	NA	NA
WP_130947219.1\|3230775_3232914_+	exonuclease	S4TNL0	Salmonella_phage	4.3e-99	42.7
WP_012542206.1\|3232966_3233212_+	excisionase	NA	NA	NA	NA
WP_163622135.1\|3233192_3234326_+\|integrase	tyrosine-type recombinase/integrase	O21925	Phage_21	5.7e-119	58.0
WP_130947243.1\|3234328_3235273_-	hypothetical protein	NA	NA	NA	NA
WP_004150800.1\|3235419_3236670_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	92.6
WP_032434335.1\|3236910_3237561_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_004150802.1\|3237577_3238036_+	NUDIX hydrolase	NA	NA	NA	NA
WP_004150803.1\|3238092_3239199_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
3242886:3242901	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP047636

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 79461

Salmonella_phage(83.33%)

tail,integrase

attL 9159:9175|attR 42833:42849

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004109820.1\|141_840_+\|tail	phage minor tail protein L	J9Q7Y5	Salmonella_phage	1.2e-122	87.4
WP_004109817.1\|832_1630_+\|tail	tail protein	J9Q7R4	Salmonella_phage	5.4e-140	85.3
WP_019704527.1\|1617_2229_+\|tail	tail assembly protein	J9Q7F8	Salmonella_phage	1.1e-76	72.1
WP_163622412.1\|2245_14416_+	DUF1983 domain-containing protein	J9Q713	Salmonella_phage	2.2e-30	59.8
9159:9175	attL	NA	NA	NA	NA
WP_117044597.1\|14468_15914_+\|tail	tail fiber domain-containing protein	A0A0H4TGH1	Klebsiella_phage	4.4e-39	37.5
WP_004109805.1\|16009_16333_+	hypothetical protein	J9Q6E7	Salmonella_phage	2.3e-49	95.3
WP_032422980.1\|16346_17039_+	membrane protein	J9Q7Y7	Salmonella_phage	2.7e-119	89.1
WP_032422981.1\|17041_17293_+	hypothetical protein	J9Q7R6	Salmonella_phage	9.9e-24	72.3
WP_072271794.1\|17285_17429_+	hypothetical protein	J9Q7G2	Salmonella_phage	2.0e-13	68.1
WP_064142045.1\|17489_18047_-	hypothetical protein	NA	NA	NA	NA
WP_060877001.1\|18366_19032_+	AAA family ATPase	J9Q7R7	Salmonella_phage	2.9e-102	83.7
WP_072196454.1\|19037_19394_+	hypothetical protein	J9Q7G3	Salmonella_phage	1.2e-43	97.9
WP_163622414.1\|19435_21154_+	hypothetical protein	X2KLG0	Campylobacter_phage	3.2e-12	29.0
WP_114441307.1\|21326_22052_+	hypothetical protein	J9Q7R8	Salmonella_phage	1.6e-127	88.4
WP_032443550.1\|22116_23457_+	AAA family ATPase	J9Q7G4	Salmonella_phage	1.6e-240	95.5
WP_162623979.1\|23604_24726_+	DNA primase	J9Q720	Salmonella_phage	1.1e-202	91.3
WP_094307881.1\|24846_25635_+	hypothetical protein	J9Q7Z0	Salmonella_phage	9.9e-70	50.8
WP_023279474.1\|25714_26182_+	hypothetical protein	J9Q7R9	Salmonella_phage	1.3e-48	63.9
WP_094307882.1\|26461_26761_+	C-type natriuretic protein	J9Q7S1	Salmonella_phage	2.5e-26	65.6
WP_163622416.1\|27882_29472_-	hypothetical protein	NA	NA	NA	NA
WP_161477184.1\|29676_30486_+	phosphate starvation-inducible protein PhoH	W8D063	Erwinia_phage	1.5e-89	64.7
WP_032655937.1\|30496_30700_+	hypothetical protein	A0A0B6VT64	Edwardsiella_phage	1.2e-06	50.8
WP_001717306.1\|30715_31081_+	phage family protein	K7PH35	Enterobacteria_phage	3.3e-36	64.3
WP_094307886.1\|31080_31326_+	GrxA family glutaredoxin	A0A2I7SAE2	Vibrio_phage	7.7e-13	46.2
WP_163622418.1\|31421_32039_+	hypothetical protein	NA	NA	NA	NA
WP_023279483.1\|32048_32459_+	hypothetical protein	NA	NA	NA	NA
WP_023279484.1\|32523_32883_-	hypothetical protein	NA	NA	NA	NA
WP_032414134.1\|33231_34332_+\|integrase	site-specific integrase	A0A1P8DTG6	Proteus_phage	9.4e-18	30.0
WP_014342091.1\|34326_34707_-	transcriptional regulator	NA	NA	NA	NA
WP_014342090.1\|34980_35193_+	hypothetical protein	NA	NA	NA	NA
WP_109223187.1\|35309_37589_+	porphyrin biosynthesis protein	J9Q7G6	Salmonella_phage	1.0e-247	63.2
WP_019704545.1\|37685_38918_+	AAA domain-containing protein	J9Q733	Salmonella_phage	1.3e-212	86.6
WP_163622420.1\|39098_41462_+	DNA polymerase III subunit alpha	J9Q7Z2	Salmonella_phage	0.0e+00	87.0
WP_159121416.1\|41464_42160_+	hypothetical protein	S5YLC4	Mycobacterium_phage	1.4e-19	36.5
WP_094327226.1\|42181_43351_+	uracil-DNA glycosylase	J9Q7Z2	Salmonella_phage	6.8e-208	92.5
42833:42849	attR	NA	NA	NA	NA
WP_163622422.1\|43365_43791_+	hypothetical protein	J9Q7S4	Salmonella_phage	2.5e-59	83.7
WP_163622424.1\|43830_44472_-	hypothetical protein	NA	NA	NA	NA
WP_113991595.1\|44535_45093_-	DNA-binding protein	J9Q7G7	Salmonella_phage	8.9e-65	69.9
WP_163622444.1\|45170_45395_-	hypothetical protein	NA	NA	NA	NA
WP_163622426.1\|45651_46083_+	hypothetical protein	J9Q6I8	Salmonella_phage	1.5e-64	90.2
WP_032440516.1\|46202_47210_+	hypothetical protein	J9Q7Z3	Salmonella_phage	2.1e-144	88.3
WP_032443567.1\|47270_48215_+	exonuclease	J9Q7S6	Salmonella_phage	4.9e-172	93.3
WP_163622410.1\|48214_48481_+	hypothetical protein	J9Q7G8	Salmonella_phage	5.0e-34	83.0
WP_073579054.1\|48510_49560_+	recombinase	J9Q736	Salmonella_phage	1.2e-192	96.0
WP_163622428.1\|49730_49907_+	hypothetical protein	J9Q7G9	Salmonella_phage	3.0e-11	69.6
WP_032423093.1\|50268_50604_+	hypothetical protein	J9Q7Z5	Salmonella_phage	4.7e-37	66.7
WP_163622430.1\|50603_50816_+	hypothetical protein	J9Q7S8	Salmonella_phage	7.3e-28	78.6
WP_162493096.1\|51288_52506_-	RepB family plasmid replication initiator protein	J9Q7H0	Salmonella_phage	1.3e-73	47.3
WP_163622431.1\|52706_53351_+	hypothetical protein	J9Q739	Salmonella_phage	4.9e-99	80.7
WP_163622433.1\|53536_55096_-	DUF4041 domain-containing protein	X5JAC1	Clostridium_phage	5.0e-57	52.3
WP_163622446.1\|55094_55265_+	hypothetical protein	NA	NA	NA	NA
WP_163622448.1\|55670_55754_-	hypothetical protein	NA	NA	NA	NA
WP_163622434.1\|55752_56838_+	exonuclease SbcCD subunit D	J9Q7S9	Salmonella_phage	3.2e-183	84.5
WP_163622436.1\|56837_57071_+	hypothetical protein	J9Q7H1	Salmonella_phage	5.8e-18	66.1
WP_160333948.1\|58624_58984_+	hypothetical protein	J9Q741	Salmonella_phage	2.4e-55	95.0
WP_014342184.1\|59009_59720_+	hypothetical protein	J9Q6J5	Salmonella_phage	2.8e-71	57.6
WP_014342183.1\|59729_60299_+	hypothetical protein	J9Q7Z7	Salmonella_phage	3.8e-95	90.5
WP_014342182.1\|60374_62678_+	ribonucleoside-diphosphate reductase subunit alpha	J9Q7T0	Salmonella_phage	0.0e+00	90.9
WP_032439706.1\|62808_63951_+	ribonucleotide-diphosphate reductase subunit beta	J9Q7H3	Salmonella_phage	2.0e-212	95.5
WP_014342180.1\|64028_64904_+	nucleoside triphosphate pyrophosphohydrolase family protein	J9Q742	Salmonella_phage	4.5e-140	84.7
WP_014342179.1\|65097_66201_+	thymidylate synthase	J9Q6J6	Salmonella_phage	2.5e-180	79.8
WP_014342178.1\|66220_66616_+	hypothetical protein	J9Q7Z8	Salmonella_phage	2.6e-50	74.8
WP_014342177.1\|66618_67089_+	dihydrofolate reductase	J9Q7T1	Salmonella_phage	2.0e-70	78.7
WP_014342176.1\|67088_67733_+	AAA family ATPase	J9Q7H4	Salmonella_phage	6.8e-93	76.6
WP_023279504.1\|67796_68216_+	hypothetical protein	J9Q743	Salmonella_phage	6.5e-52	74.1
WP_014342174.1\|68225_68783_+	3'-5' exonuclease	J9Q6J8	Salmonella_phage	1.4e-86	84.2
WP_032439708.1\|68908_69742_+	hypothetical protein	J9Q7Z9	Salmonella_phage	1.6e-62	52.7
WP_032439710.1\|69926_70520_+	phage N-6-adenine-methyltransferase	J9Q7T2	Salmonella_phage	7.7e-99	85.3
WP_032423059.1\|70717_70945_+	hypothetical protein	J9Q7H5	Salmonella_phage	7.6e-31	84.0
WP_019704565.1\|71524_72112_+	ribonuclease HI	J9Q745	Salmonella_phage	3.4e-91	80.2
WP_032439715.1\|73109_73535_+	tellurite resistance TerB family protein	Q71TK7	Escherichia_phage	7.5e-56	80.9
WP_019704568.1\|73534_73690_+	DUF3927 family protein	H6WZJ7	Escherichia_phage	1.3e-05	61.2
WP_032439717.1\|73817_74396_+	hypothetical protein	J9Q7H6	Salmonella_phage	3.9e-55	57.0
WP_032439719.1\|74524_76210_+	DUF4942 domain-containing protein	J9Q747	Salmonella_phage	0.0e+00	90.7
WP_094313856.1\|76298_77000_+	hypothetical protein	J9Q6K2	Salmonella_phage	4.7e-79	70.2
WP_032439722.1\|77151_77415_+	hypothetical protein	J9Q7T5	Salmonella_phage	4.8e-29	70.5
WP_032439724.1\|77703_78783_-	hypothetical protein	NA	NA	NA	NA
WP_032439726.1\|79143_79461_+	hypothetical protein	J9Q750	Salmonella_phage	2.1e-42	73.3

DBSCAN-SWA_2

82581 : 108680

Salmonella_phage(93.94%)

terminase,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_019704577.1\|82581_82800_+	hypothetical protein	J9Q6K7	Salmonella_phage	2.9e-27	81.9
WP_023279445.1\|82812_83025_+	hypothetical protein	J9Q804	Salmonella_phage	4.4e-25	77.9
WP_072199357.1\|83173_83473_+	hypothetical protein	J9Q7T7	Salmonella_phage	5.0e-30	68.7
WP_162899469.1\|83580_84000_+	hypothetical protein	NA	NA	NA	NA
WP_072196389.1\|84210_84408_+	hypothetical protein	J9Q753	Salmonella_phage	6.4e-26	80.0
WP_032439735.1\|84435_84624_-	hypothetical protein	E5FFJ6	Burkholderia_phage	1.1e-11	61.1
WP_021313140.1\|84849_85332_+	hypothetical protein	J9Q805	Salmonella_phage	1.3e-64	70.6
WP_004109904.1\|85923_86127_-	hypothetical protein	J9Q7I3	Salmonella_phage	4.1e-28	95.5
WP_004109892.1\|86177_86828_-	hypothetical protein	J9Q754	Salmonella_phage	8.4e-107	91.7
WP_123827665.1\|87152_87452_-	hypothetical protein	NA	NA	NA	NA
WP_014342147.1\|87461_87992_-	transcriptional regulator	J9Q6L0	Salmonella_phage	3.5e-71	84.5
WP_014342146.1\|88150_88585_+	hypothetical protein	A0A1V0E7W1	Vibrio_phage	9.5e-14	36.4
WP_004109887.1\|88635_88911_-	hypothetical protein	J9Q7T9	Salmonella_phage	3.1e-26	68.1
WP_094313851.1\|88913_90473_-	DEAD/DEAH box helicase	J9Q7I4	Salmonella_phage	2.0e-279	92.9
WP_050484892.1\|90532_91237_+	ParB N-terminal domain-containing protein	J9Q756	Salmonella_phage	2.8e-108	89.3
WP_014342142.1\|91236_91905_+	ParB N-terminal domain-containing protein	J9Q6L1	Salmonella_phage	1.9e-106	91.4
WP_094307872.1\|91901_92540_+	ATP-binding cassette domain-containing protein	J9Q807	Salmonella_phage	3.9e-109	97.2
WP_019704585.1\|92532_92787_+	hypothetical protein	J9Q7U0	Salmonella_phage	2.0e-40	96.4
WP_004109872.1\|92792_93683_+	hypothetical protein	J9Q7I6	Salmonella_phage	5.4e-165	97.0
WP_004109869.1\|93692_93959_+	hypothetical protein	J9Q757	Salmonella_phage	1.3e-37	90.9
WP_004109866.1\|94134_94776_+	DNA-binding protein	J9Q6D4	Salmonella_phage	5.0e-96	88.2
WP_114441316.1\|94778_96035_+\|terminase	terminase	J9Q7Y2	Salmonella_phage	2.1e-247	97.1
WP_163622440.1\|96067_97642_+\|portal	phage portal protein	J9Q7R1	Salmonella_phage	5.6e-274	88.2
WP_014342135.1\|97664_98564_+	hypothetical protein	J9Q7F4	Salmonella_phage	1.0e-123	82.6
WP_064343494.1\|98590_99469_+	hypothetical protein	J9Q710	Salmonella_phage	2.8e-153	94.5
WP_060528003.1\|99547_99976_+	Ig domain-containing protein	J9Q6D6	Salmonella_phage	1.0e-28	70.6
WP_014342133.1\|99951_100140_-	hypothetical protein	NA	NA	NA	NA
WP_160552724.1\|100077_100458_+	hypothetical protein	J9Q7Y3	Salmonella_phage	3.4e-52	81.7
WP_021313128.1\|100457_101291_+	hypothetical protein	J9Q7R2	Salmonella_phage	4.8e-131	83.4
WP_021313127.1\|101388_101733_+	hypothetical protein	J9Q7F6	Salmonella_phage	2.2e-53	92.1
WP_021313126.1\|101723_102197_+	hypothetical protein	J9Q711	Salmonella_phage	1.9e-76	93.6
WP_047066294.1\|102198_102591_+	hypothetical protein	J9Q6D8	Salmonella_phage	2.0e-47	68.3
WP_004109839.1\|102658_103405_+	Ig domain-containing protein	J9Q7Y4	Salmonella_phage	3.7e-106	83.0
WP_004109835.1\|103466_103784_+	hypothetical protein	J9Q7R3	Salmonella_phage	1.8e-46	93.3
WP_014342129.1\|103909_104134_+	hypothetical protein	J9Q7F7	Salmonella_phage	2.0e-31	93.2
WP_163622442.1\|104141_108680_+	tape measure protein	J9Q712	Salmonella_phage	0.0e+00	72.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP047634

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

52803 : 110526

uncultured_Caudovirales_phage(20.0%)

integrase,transposase

attL 70432:70447|attR 126670:126685

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_077254728.1\|52803_54150_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_032422684.1\|54198_54597_+	helix-turn-helix domain containing protein	NA	NA	NA	NA
WP_032439648.1\|57113_58391_-	DUF2254 domain-containing protein	NA	NA	NA	NA
WP_023307506.1\|58453_60451_-	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	4.1e-19	24.9
WP_001114073.1\|62057_62411_+	As(III)-sensing metalloregulatory transcriptional repressor ArsR	A0A2H4J145	uncultured_Caudovirales_phage	4.1e-23	50.0
WP_004118102.1\|62458_62821_+	arsenite efflux transporter metallochaperone ArsD	NA	NA	NA	NA
WP_019704517.1\|62838_64590_+	arsenite efflux transporter ATPase subunit ArsA	NA	NA	NA	NA
WP_004118136.1\|64637_65927_+	arsenite efflux transporter membrane subunit ArsB	A0A2H4J144	uncultured_Caudovirales_phage	2.1e-170	73.5
WP_032439646.1\|65939_66365_+	glutaredoxin-dependent arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	1.4e-49	70.0
WP_032423391.1\|66715_67330_+	hypothetical protein	NA	NA	NA	NA
WP_004118146.1\|67585_68551_-	DMT family transporter	NA	NA	NA	NA
WP_004206594.1\|68547_69366_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.4e-29	39.6
WP_032439643.1\|69370_70033_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_032439641.1\|70029_70701_-	amino acid ABC transporter permease	NA	NA	NA	NA
70432:70447	attL	NA	NA	NA	NA
WP_032439640.1\|70724_71573_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_032439639.1\|71728_72682_+	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	3.3e-11	25.0
WP_032439636.1\|72768_73986_+	M24 family metallopeptidase	NA	NA	NA	NA
WP_032439635.1\|74619_75141_+	RNA polymerase sigma factor FecI	NA	NA	NA	NA
WP_030003506.1\|75137_76091_+	fec operon regulator FecR	NA	NA	NA	NA
WP_032448287.1\|76177_78496_+	Fe(3+) dicitrate transport protein FecA	NA	NA	NA	NA
WP_004182127.1\|78540_79443_+	Fe(3+) dicitrate ABC transporter substrate-binding protein FecB	NA	NA	NA	NA
WP_004182126.1\|79439_80438_+	iron-dicitrate ABC transporter permease FecC	NA	NA	NA	NA
WP_004118246.1\|80434_81391_+	Fe(3+) dicitrate ABC transporter permease subunit FecD	NA	NA	NA	NA
WP_004152282.1\|81391_82159_+	Fe(3+) dicitrate ABC transporter ATP-binding protein FecE	G3M9Y6	Bacillus_virus	9.8e-14	25.2
WP_004118251.1\|82257_82551_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.7e-49	96.9
WP_071527925.1\|82881_83124_-	EAL domain-containing protein	NA	NA	NA	NA
WP_004152284.1\|83502_84513_-	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_016831235.1\|84973_86056_+	DNA-binding transcriptional repressor LacI	C6ZCU4	Enterobacteria_phage	4.4e-185	96.1
WP_001351729.1\|88373_88766_+	cysteine hydrolase	NA	NA	NA	NA
WP_000058717.1\|88903_89788_+	EamA family transporter	NA	NA	NA	NA
WP_000804064.1\|89819_91019_-	tetracycline efflux MFS transporter Tet(A)	NA	NA	NA	NA
WP_000164043.1\|91124_91775_+	tetracycline resistance transcriptional repressor TetR(A)	NA	NA	NA	NA
WP_000844627.1\|91806_92049_-\|transposase	transposase	NA	NA	NA	NA
WP_001067855.1\|92425_93130_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000219391.1\|93251_94157_+	Mph(A) family macrolide 2'-phosphotransferase	NA	NA	NA	NA
WP_000004159.1\|94153_95392_+	MFS transporter	NA	NA	NA	NA
WP_001137892.1\|95391_95976_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_001389365.1\|96468_97233_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_000130000.1\|97459_97765_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000184001.1\|97775_98981_-	chromate efflux transporter	NA	NA	NA	NA
WP_000376616.1\|99136_99340_-	hypothetical protein	NA	NA	NA	NA
WP_000259031.1\|99467_100307_-	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_063866158.1\|100797_101442_+	quinolone resistance pentapeptide repeat protein QnrB52	NA	NA	NA	NA
WP_003833285.1\|101483_101936_-	SgcJ/EcaC family oxidoreductase	NA	NA	NA	NA
WP_000050481.1\|103242_104784_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_000259031.1\|105188_106028_-	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000679427.1\|106021_106369_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_001749984.1\|106485_107331_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA16	NA	NA	NA	NA
WP_001749985.1\|107511_107985_-	trimethoprim-resistant dihydrofolate reductase DfrA27	G3MBI7	Bacillus_virus	1.4e-15	29.1
WP_001749986.1\|108117_108570_-	NAD(+)--rifampin ADP-ribosyltransferase Arr-3	NA	NA	NA	NA
WP_063840321.1\|108666_109221_-	fluoroquinolone-acetylating aminoglycoside 6'-N-acetyltransferase AAC(6')-Ib-cr5	NA	NA	NA	NA
WP_000845048.1\|109512_110526_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
126670:126685	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP047633

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP047636

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP047634

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection