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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP049044 Pseudomonas psychrophila strain KM02 chromosome, complete genome 1 crisprs DEDDh,PD-DExK,cas3,csa3,DinG 3 0 3 0

Results visualization

1. NZ_CP049044
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP049044_1 3870711-3871158 Orphan NA
3 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP049044_1 1.1|3870775|64|NZ_CP049044|PILER-CR 3870775-3870838 64 NZ_CP049044.1 3870391-3870454 4 0.938
NZ_CP049044_1 1.1|3870775|64|NZ_CP049044|PILER-CR 3870775-3870838 64 NZ_CP049044.1 3870647-3870710 4 0.938
NZ_CP049044_1 1.2|3870903|64|NZ_CP049044|PILER-CR 3870903-3870966 64 NZ_CP049044.1 4059967-4060030 4 0.938
NZ_CP049044_1 1.3|3871031|64|NZ_CP049044|PILER-CR 3871031-3871094 64 NZ_CP049044.1 3870391-3870454 4 0.938
NZ_CP049044_1 1.3|3871031|64|NZ_CP049044|PILER-CR 3871031-3871094 64 NZ_CP049044.1 3870647-3870710 4 0.938
NZ_CP049044_1 1.2|3870903|64|NZ_CP049044|PILER-CR 3870903-3870966 64 NZ_CP049044.1 375796-375859 5 0.922
NZ_CP049044_1 1.2|3870903|64|NZ_CP049044|PILER-CR 3870903-3870966 64 NZ_CP049044.1 376053-376116 5 0.922
NZ_CP049044_1 1.2|3870903|64|NZ_CP049044|PILER-CR 3870903-3870966 64 NZ_CP049044.1 376181-376244 5 0.922
NZ_CP049044_1 1.2|3870903|64|NZ_CP049044|PILER-CR 3870903-3870966 64 NZ_CP049044.1 376309-376372 6 0.906
NZ_CP049044_1 1.2|3870903|64|NZ_CP049044|PILER-CR 3870903-3870966 64 NZ_CP049044.1 3870519-3870582 6 0.906

1. spacer 1.1|3870775|64|NZ_CP049044|PILER-CR matches to position: 3870391-3870454, mismatch: 4, identity: 0.938

aactcttcagggcgccaaagttgaagtgggagcgagcccgctcgcgaaggcagcaccgcg	CRISPR spacer
aactcttcagggcgccaaagttgaagtgggagcgagcccgctcgcgaaggcagcaccgcg	Protospacer
************************************************************

2. spacer 1.1|3870775|64|NZ_CP049044|PILER-CR matches to position: 3870647-3870710, mismatch: 4, identity: 0.938

aactcttcagggcgccaaagttgaagtgggagcgagcccgctcgcgaaggcagcaccgcg	CRISPR spacer
aactcttcagggcgccaaagttgaagtgggagcgagcccgctcgcgaaggcagcaccgcg	Protospacer
************************************************************

3. spacer 1.2|3870903|64|NZ_CP049044|PILER-CR matches to position: 4059967-4060030, mismatch: 4, identity: 0.938

gactcttcagggcgccaaagttgaagtgggagcgagcccgctcgcgaaggcatcaccgcg	CRISPR spacer
gactcttcagggcgccaaagttgaagtgggagcgagcccgctcgcgaaggcatcaccgcg	Protospacer
************************************************************

4. spacer 1.3|3871031|64|NZ_CP049044|PILER-CR matches to position: 3870391-3870454, mismatch: 4, identity: 0.938

aactcttcagggcgccaaagttgaagtgggagcgagcccgctcgcgaaggcagcaccgcg	CRISPR spacer
aactcttcagggcgccaaagttgaagtgggagcgagcccgctcgcgaaggcagcaccgcg	Protospacer
************************************************************

5. spacer 1.3|3871031|64|NZ_CP049044|PILER-CR matches to position: 3870647-3870710, mismatch: 4, identity: 0.938

aactcttcagggcgccaaagttgaagtgggagcgagcccgctcgcgaaggcagcaccgcg	CRISPR spacer
aactcttcagggcgccaaagttgaagtgggagcgagcccgctcgcgaaggcagcaccgcg	Protospacer
************************************************************

6. spacer 1.2|3870903|64|NZ_CP049044|PILER-CR matches to position: 375796-375859, mismatch: 5, identity: 0.922

gactcttcagggcgccaaagttgaagtgggagcgagcccgctcgcgaaggcatcaccgcg	CRISPR spacer
gactcttcagggcgccaaagttgaagtgggagcgagcctgctcgcgaaggcatcaccgcg	Protospacer
**************************************.*********************

7. spacer 1.2|3870903|64|NZ_CP049044|PILER-CR matches to position: 376053-376116, mismatch: 5, identity: 0.922

gactcttcagggcgccaaagttgaagtgggagcgagcccgctcgcgaaggcatcaccgcg	CRISPR spacer
gactcttcagggcgccaaagttgaagtgggagcgagcctgctcgcgaaggcatcaccgcg	Protospacer
**************************************.*********************

8. spacer 1.2|3870903|64|NZ_CP049044|PILER-CR matches to position: 376181-376244, mismatch: 5, identity: 0.922

gactcttcagggcgccaaagttgaagtgggagcgagcccgctcgcgaaggcatcaccgcg	CRISPR spacer
gattcttcagggcgccaaagttgaagtgggagcgagcccgctcgcgaaggcatcaccgcg	Protospacer
**.*********************************************************

9. spacer 1.2|3870903|64|NZ_CP049044|PILER-CR matches to position: 376309-376372, mismatch: 6, identity: 0.906

gactcttcagggcgccaaagttgaagtgggagcgagcccgctcgcgaaggcatcaccgcg	CRISPR spacer
gattcttcagggcgccaaagttgaagtgggagcgagcccgctcgcgaaagcatcaccgcg	Protospacer
**.*********************************************.***********

10. spacer 1.2|3870903|64|NZ_CP049044|PILER-CR matches to position: 3870519-3870582, mismatch: 6, identity: 0.906

gactcttcagggcgccaaagttgaagtgggagcgagcccgctcgcgaaggcatcaccgcg	CRISPR spacer
gattcttcagggcgccaaagttgaagtgggagcgagcccgctcgcgaaggcagcaccgcg	Protospacer
**.************************************************* *******

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1036986 : 1077429 34 Bacillus_virus(28.57%) integrase,transposase,holin attL 1029616:1029641|attR 1064918:1064943
DBSCAN-SWA_2 4095761 : 4101970 10 uncultured_Caudovirales_phage(90.0%) NA NA
DBSCAN-SWA_3 4389608 : 4429803 37 uncultured_Caudovirales_phage(10.0%) coat,protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage