CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP049047	Enterobacter hormaechei strain Y233 plasmid pIHI2-233, complete sequence	0 crisprs	csa3	0	3
NZ_CP049046	Enterobacter hormaechei strain Y233 chromosome, complete genome	3 crisprs	cas14j,DEDDh,DinG,cas3,csa3,WYL	2	8
NZ_CP049049	Enterobacter hormaechei strain Y233 plasmid p233-2, complete sequence	0 crisprs	NA	0	0
NZ_CP049048	Enterobacter hormaechei strain Y233 plasmid p233-142, complete sequence	0 crisprs	NA	0	2

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

20210 : 57723

uncultured_Caudovirales_phage(35.29%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_100185530.1\|20210_21125_+\|transposase	IS5 family transposase	A0A077SK28	Escherichia_phage	3.6e-172	98.4
WP_000900745.1\|21290_21608_+	hypothetical protein	NA	NA	NA	NA
WP_001371904.1\|21658_22066_-	hypothetical protein	NA	NA	NA	NA
WP_000285959.1\|22523_23195_-	trypsin-like peptidase domain-containing protein	NA	NA	NA	NA
WP_001100610.1\|23239_23545_-	hypothetical protein	NA	NA	NA	NA
WP_000785965.1\|23567_23885_-	hypothetical protein	NA	NA	NA	NA
WP_001567368.1\|24098_25502_+\|transposase	ISNCY-like element ISKpn21 family transposase	NA	NA	NA	NA
WP_001567369.1\|25530_26163_-	hypothetical protein	NA	NA	NA	NA
WP_072034961.1\|26237_26639_+\|transposase	IS5/IS1182 family transposase	A0A1B0VFY5	Salmonella_phage	2.9e-65	98.4
WP_013815099.1\|26640_27609_+\|transposase	IS5-like element IS903B family transposase	A0A1B0VFY5	Salmonella_phage	1.0e-185	99.1
WP_012695470.1\|27769_28585_+	aminoglycoside O-phosphotransferase APH(3')-Ia	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	7.4e-161	98.2
WP_012695469.1\|28721_29615_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_021243026.1\|29808_30966_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_012695467.1\|31043_31628_+	MFS transporter	NA	NA	NA	NA
WP_022652343.1\|31649_32618_+\|transposase	IS5-like element IS903B family transposase	A0A1B0VFY5	Salmonella_phage	3.7e-183	98.1
WP_000125668.1\|32837_34241_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_000130816.1\|34273_34978_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	8.8e-86	72.9
WP_000941305.1\|35064_35385_+	transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	1.7e-20	53.7
WP_000922628.1\|35430_36720_+	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	9.9e-168	71.4
WP_000065802.1\|36732_37158_+	glutaredoxin-dependent arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	1.6e-50	70.7
WP_001066652.1\|37217_38045_-	universal stress protein	A0A2H4J154	uncultured_Caudovirales_phage	4.9e-43	37.2
WP_000927306.1\|38063_39542_-	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	7.3e-199	74.4
WP_000864986.1\|40033_40309_-	hypothetical protein	NA	NA	NA	NA
WP_001371914.1\|40449_40647_-	hypothetical protein	NA	NA	NA	NA
WP_000637193.1\|41633_41891_-	hypothetical protein	NA	NA	NA	NA
WP_001005009.1\|41964_42279_-	hypothetical protein	NA	NA	NA	NA
WP_000975181.1\|42326_43223_-	hypothetical protein	NA	NA	NA	NA
WP_000464825.1\|43225_43741_-	thermonuclease family protein	A0A1X6WF84	Pacmanvirus	2.1e-07	38.6
WP_000833380.1\|43955_45383_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	3.4e-100	52.3
WP_000220758.1\|45443_45611_+	hypothetical protein	A0A2D2W2Z9	Escherichia_phage	7.3e-07	50.9
WP_000078513.1\|45633_46953_+	DUF1173 family protein	NA	NA	NA	NA
WP_000121164.1\|46965_47169_+	hypothetical protein	NA	NA	NA	NA
WP_001371952.1\|47232_48438_-	hypothetical protein	NA	NA	NA	NA
WP_000193207.1\|48434_49253_-	DUF4942 domain-containing protein	NA	NA	NA	NA
WP_000019951.1\|49718_49991_-	Ni(II)/Co(II)-binding transcriptional repressor RcnR	NA	NA	NA	NA
WP_001572377.1\|50113_51229_+	nickel/cobalt efflux protein RcnA	NA	NA	NA	NA
WP_000723070.1\|51486_51921_-	hypothetical protein	NA	NA	NA	NA
WP_004248839.1\|52138_53485_-	copper resistance membrane spanning protein PcoS	W8CYF6	Bacillus_phage	8.8e-18	26.6
WP_072196614.1\|53523_54492_+\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	1.1e-184	98.8
WP_001572373.1\|54680_56300_+	phosphoethanolamine--lipid A transferase MCR-9.1	NA	NA	NA	NA
WP_001572372.1\|56376_56853_+	WbuC family cupin fold metalloprotein	NA	NA	NA	NA
WP_001067855.1\|57018_57723_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0

DBSCAN-SWA_2

66925 : 121358

Enterobacteria_phage(16.67%)

integrase,protease,transposase

attL 62626:62641|attR 118102:118117

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
62626:62641	attL	NA	NA	NA	NA
WP_000845039.1\|66925_67939_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_000019304.1\|68541_69111_-	trimethoprim-resistant dihydrofolate reductase DfrA19	A0A1V0SD48	Indivirus	3.5e-08	27.2
WP_002008781.1\|69110_69611_-	hypothetical protein	A0A1V0SB21	Catovirus	3.3e-10	31.7
WP_124060921.1\|69876_70452_-	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|70428_71133_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001143760.1\|75084_78090_-\|transposase	Tn3-like element Tn3 family transposase	Q1MVP5	Enterobacteria_phage	0.0e+00	100.0
WP_001235713.1\|78253_78811_+	recombinase family protein	Q1MVP4	Enterobacteria_phage	7.0e-94	100.0
WP_000027057.1\|78993_79854_+	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_001371925.1\|80183_80564_+	hypothetical protein	NA	NA	NA	NA
WP_000490638.1\|80621_81287_+	hypothetical protein	NA	NA	NA	NA
WP_000916941.1\|81346_81802_+	hypothetical protein	NA	NA	NA	NA
WP_000175475.1\|81842_82079_+	hypothetical protein	NA	NA	NA	NA
WP_001100635.1\|82104_82398_+	hypothetical protein	NA	NA	NA	NA
WP_001287391.1\|82575_82980_+	H-NS histone family protein	NA	NA	NA	NA
WP_000784387.1\|83586_84444_-	HNH endonuclease	G0X580	Salmonella_phage	3.9e-11	34.2
WP_001224686.1\|84459_84768_-	hypothetical protein	NA	NA	NA	NA
WP_000278471.1\|85316_85742_-	hypothetical protein	NA	NA	NA	NA
WP_001166628.1\|86419_86875_-	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_001294656.1\|86946_87312_+	mercuric ion transporter MerT	NA	NA	NA	NA
WP_000732275.1\|87327_87603_+	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_000522996.1\|87630_88056_+	organomercurial transporter MerC	NA	NA	NA	NA
WP_000209297.1\|88094_89780_+	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	1.8e-39	29.1
WP_001277466.1\|89797_90163_+	mercury resistance co-regulator MerD	NA	NA	NA	NA
WP_001087807.1\|90159_90396_+	broad-spectrum mercury transporter MerE	NA	NA	NA	NA
WP_001446012.1\|90379_90499_-	hypothetical protein	NA	NA	NA	NA
WP_000993245.1\|90461_90674_+	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_000118563.1\|90682_91759_-	signal peptidase II	NA	NA	NA	NA
WP_001287661.1\|91755_94161_-	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.0e-141	46.1
WP_000405672.1\|94246_94681_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_072202995.1\|95202_96171_+\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	3.8e-172	91.3
WP_001805097.1\|97022_97547_-	hypothetical protein	NA	NA	NA	NA
WP_000985909.1\|97559_97970_-	hypothetical protein	NA	NA	NA	NA
WP_000134171.1\|98070_98277_-	hypothetical protein	NA	NA	NA	NA
WP_000088044.1\|98337_99663_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
WP_012477377.1\|99667_99961_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012695445.1\|100361_101750_-	hypothetical protein	NA	NA	NA	NA
WP_000340139.1\|101754_102252_-	membrane protein	NA	NA	NA	NA
WP_000462754.1\|102454_103111_-\|protease	trypsin-like serine protease	NA	NA	NA	NA
WP_000341066.1\|103769_104162_-	hypothetical protein	NA	NA	NA	NA
WP_000211823.1\|105082_106069_+	hypothetical protein	NA	NA	NA	NA
WP_000166877.1\|106065_108105_+	ATP-dependent helicase	E3T5J8	Cafeteria_roenbergensis_virus	1.7e-25	25.3
WP_000880375.1\|108107_108362_-	hypothetical protein	NA	NA	NA	NA
WP_001151572.1\|109348_109690_+	hypothetical protein	NA	NA	NA	NA
WP_000398479.1\|109781_109973_+	hypothetical protein	NA	NA	NA	NA
WP_000374058.1\|110213_110669_-	hypothetical protein	NA	NA	NA	NA
WP_001053340.1\|110759_112001_-	tellurium resistance protein TerF	NA	NA	NA	NA
WP_000301247.1\|112429_113005_-	TerD family protein	K4JRX3	Caulobacter_phage	8.7e-31	41.6
WP_000116680.1\|113073_113652_-	tellurium resistance membrane protein TerD	A0A2P1N0L4	Streptomyces_phage	2.5e-06	40.0
WP_000255079.1\|113700_114741_-	tellurium resistance membrane protein TerC	K7QKE8	Escherichia_phage	2.2e-77	48.0
WP_000007449.1\|114763_115219_-	tellurite resistance TerB family protein	NA	NA	NA	NA
WP_001054786.1\|115241_116399_-	tellurium resistance protein TerA	NA	NA	NA	NA
WP_000254137.1\|116398_116980_-	tellurium resistance-associated protein TerZ	K4JRX3	Caulobacter_phage	6.3e-13	30.0
WP_012695441.1\|117300_118359_+	hypothetical protein	NA	NA	NA	NA
118102:118117	attR	NA	NA	NA	NA
WP_001280115.1\|118368_119511_+	hypothetical protein	A0A172Q0Y1	Acinetobacter_phage	6.5e-30	34.5
WP_001040058.1\|119503_120277_+	hypothetical protein	NA	NA	NA	NA
WP_001585166.1\|120278_121358_+\|protease	cysteine protease StiP family protein	A0A172Q0S8	Acinetobacter_phage	2.8e-38	34.1

DBSCAN-SWA_3

231130 : 274331

Escherichia_phage(46.67%)

integrase,transposase

attL 268450:268509|attR 281275:282094

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_072223036.1\|231130_232099_+\|transposase	IS5-like element IS903B family transposase	A0A1B0VFY5	Salmonella_phage	1.8e-185	99.1
WP_000140246.1\|232215_232545_+	hypothetical protein	NA	NA	NA	NA
WP_001180999.1\|234360_234600_+	hypothetical protein	NA	NA	NA	NA
WP_000172888.1\|234662_234974_+	hypothetical protein	NA	NA	NA	NA
WP_000159617.1\|234970_235165_+	hypothetical protein	NA	NA	NA	NA
WP_164692046.1\|238258_238804_+	aminoglycoside N-acetyltransferase AAC(6')-IIc	NA	NA	NA	NA
WP_006473457.1\|239291_240647_+\|transposase	IS1380-like element IS1247 family transposase	A0A1X9I6F6	Streptococcus_phage	2.2e-45	29.7
WP_012695485.1\|240888_241698_+	AAC(3)-II family aminoglycoside N-acetyltransferase	O64018	Bacillus_phage	1.2e-17	29.3
WP_012695486.1\|241825_242239_+	NAD(+)--rifampin ADP-ribosyltransferase	NA	NA	NA	NA
WP_012695487.1\|242601_243033_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_000679427.1\|244342_244690_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259031.1\|244683_245523_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000050481.1\|245927_247469_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_004193276.1\|248144_249110_-	peptide ABC transporter permease SapB	NA	NA	NA	NA
WP_004193272.1\|249106_250750_-	peptide ABC transporter substrate-binding protein SapA	NA	NA	NA	NA
WP_004193269.1\|251050_251443_-	YdeI family stress tolerance OB fold protein	NA	NA	NA	NA
WP_004193267.1\|251574_252078_+	hypothetical protein	NA	NA	NA	NA
WP_004193264.1\|252087_252534_+	DUF421 domain-containing protein	NA	NA	NA	NA
WP_004193262.1\|252481_253060_+	2-oxo-tetronate isomerase	B5TK85	Pseudomonas_phage	2.0e-19	34.0
WP_004193260.1\|253236_254145_+	SDR family oxidoreductase	A0A2N9QUX2	Trichoplusia_ni_ascovirus	4.3e-77	53.0
WP_017900990.1\|254240_254885_-	quinolone resistance pentapeptide repeat protein QnrB4	NA	NA	NA	NA
WP_017900991.1\|254967_255957_-	phage shock protein operon transcriptional activator	NA	NA	NA	NA
WP_004193245.1\|256834_257059_+	envelope stress response membrane protein PspB	NA	NA	NA	NA
WP_004193243.1\|257058_257418_+	envelope stress response membrane protein PspC	NA	NA	NA	NA
WP_004193241.1\|257426_257657_+	phage shock protein PspD	NA	NA	NA	NA
WP_004236386.1\|259007_260147_-	class C beta-lactamase DHA-1	NA	NA	NA	NA
WP_004193231.1\|260257_261133_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_025999322.1\|261136_261502_-	hydrogenase maturation nickel metallochaperone HypA	NA	NA	NA	NA
WP_052238321.1\|261394_261730_+	ethidium bromide resistance protein	NA	NA	NA	NA
WP_000376623.1\|262689_263190_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011977770.1\|263881_264313_-	hypothetical protein	A0A077SK32	Escherichia_phage	2.9e-55	97.3
WP_002903955.1\|265569_266472_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
WP_002210513.1\|266733_267495_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_002904004.1\|267515_268376_-	class A extended-spectrum beta-lactamase SHV-12	A0A077SL40	Escherichia_phage	2.2e-155	99.3
268450:268509	attL	NA	NA	NA	NA
WP_001067855.1\|268512_269217_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_077249983.1\|269376_270885_+\|transposase	IS21-like element ISCfr8 family transposase	A0A2L1IVA1	Escherichia_phage	9.9e-26	32.7
WP_012695455.1\|270871_271612_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	4.4e-43	41.7
WP_032488579.1\|271839_272394_-	aminoglycoside N-acetyltransferase AAC(6')-Ib3	NA	NA	NA	NA
WP_138827841.1\|272570_273590_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	8.1e-72	45.5
WP_001067855.1\|273626_274331_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
281275:282094	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP049046

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP049046_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049046_1

820381-820485

Orphan

Consensus_repeat	Method
TGTCCAGCCGATGTCCAGCCAGTGTCCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP049046_1

>merge|NZ_CP049046|1|820381-820485|CRISPRCasFinder
AGTCAAATTTTTGTCCAGCCGATGTCCAGCCAGTGTCCAGCCCAAGCGCAGTCGTACCAATGCCTGCGGAGGTGGAGTGTCCAGCCGATGTCCAGCCAGTGTCCA

>NZ_CP049046|1|1|820381-820485|CRISPRCasFinder
AGTCAAATTTTTGTCCAGCCGATGTCCA	GCCAGTGTCCAGCCCAAGCGCAGTCGTACCAATGCCTGCGGAGGTGGAG
TGTCCAGCCGATGTCCAGCCAGTGTCCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049046.1\|WP_164691813.1\|823424_824183_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049046.1\|WP_149912276.1\|819227_819770_+\|regulator	unknown	unknown	gnl\|CDD\|368819
NZ_CP049046.1\|WP_164691812.1\|822320_822665_+\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238042
NZ_CP049046.1\|WP_049110418.1\|824557_824857_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049046.1\|WP_006809779.1\|818981_819197_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP049046.1\|WP_049130133.1\|824902_825403_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049046.1\|WP_032667910.1\|815511_815739_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049046.1\|WP_047727197.1\|822954_823428_+\|ead/Ea22-like-family-protein	unknown	unknown	gnl\|CDD\|379401
NZ_CP049046.1\|WP_164691810.1\|818236_818878_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|224885
NZ_CP049046.1\|WP_164691811.1\|820887_822321_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|274672
NZ_CP049046.1\|WP_045325426.1\|817381_818143_-\|KilA-N-domain-containing-protein	unknown	unknown	gnl\|CDD\|367917
NZ_CP049046.1\|WP_015571544.1\|819859_820006_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049046.1\|WP_023313997.1\|817046_817244_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049046.1\|WP_047727199.1\|822661_822958_+\|DUF4406-domain-containing-protein	unknown	unknown	gnl\|CDD\|379581
NZ_CP049046.1\|WP_109885434.1\|825689_825950_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049046.1\|WP_032634774.1\|826127_826583_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182057
NZ_CP049046.1\|WP_023294196.1\|815356_815515_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049046.1\|WP_164691809.1\|815886_816525_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049046.1\|WP_164691814.1\|825444_825693_+\|DNA-polymerase-III-subunit-theta	unknown	unknown	gnl\|CDD\|368909
NZ_CP049046.1\|WP_023622534.1\|815156_815360_-\|phage-encoded-cell-division-inhibitor-protein	unknown	unknown	gnl\|CDD\|236900

Protein	Function_ID	Function_description	E-value
NZ_CP049046.1\|WP_149912276.1\|819227_819770_+\|regulator	gnl\|CDD\|368819	pfam06254, YdaT_toxin, Putative bacterial toxin ydaT. YdaT_toxin is a family of putative bacterial toxins that are neutralized by the putative antitoxin YdaS, UniProtKB:P76063, family pfam144549.	2.79393e-34
NZ_CP049046.1\|WP_032634774.1\|826127_826583_+\|hypothetical-protein	gnl\|CDD\|182057	PRK09741, PRK09741, hypothetical protein; Provisional.	5.72425e-94
NZ_CP049046.1\|WP_164691812.1\|822320_822665_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	0.000123826
NZ_CP049046.1\|WP_164691814.1\|825444_825693_+\|DNA-polymerase-III-subunit-theta	gnl\|CDD\|368909	pfam06440, DNA_pol3_theta, DNA polymerase III, theta subunit. DNA polymerase III (EC 2.7.7.7) is comprised of three tightly associated subunits, alpha, epsilon and theta. This family contains the theta subunit. The structure of the theta subunit shows that the N-terminal two thirds is comprised of three helices while the C-terminal third is disordered. The function of the theta subunit is poorly understood, but the interaction of the theta subunit with the epsilon subunit is thought to enhance the 3' to 5' exonucleolytic proofreading activity of epsilon.	2.75743e-34
NZ_CP049046.1\|WP_006809779.1\|818981_819197_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	9.83313e-11
NZ_CP049046.1\|WP_047727197.1\|822954_823428_+\|ead/Ea22-like-family-protein	gnl\|CDD\|379401	pfam13935, Ead_Ea22, Ead/Ea22-like protein. This family contains phage proteins and bacterial proteins that are likely to represent integrated phage proteins. This family includes the Lambda phage Ea22 early protein as well as the Bacteriophage P22 Ead protein.	4.05791e-14
NZ_CP049046.1\|WP_047727199.1\|822661_822958_+\|DUF4406-domain-containing-protein	gnl\|CDD\|379581	pfam14359, DUF4406, Domain of unknown function (DUF4406). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 98 and 145 amino acids in length.	8.61136e-37
NZ_CP049046.1\|WP_045325426.1\|817381_818143_-\|KilA-N-domain-containing-protein	gnl\|CDD\|367917	pfam04383, KilA-N, KilA-N domain. The amino-terminal module of the D6R/N1R proteins defines a novel, conserved DNA-binding domain (the KilA-N domain) that is found in a wide range of proteins of large bacterial and eukaryotic DNA viruses. The KilA-N domain family also includes the previously defined APSES domain. The KilA-N and APSES domains may also share a common fold with the nucleic acid-binding modules of the LAGLIDADG nucleases and the amino-terminal domains of the tRNA endonuclease.	1.69252e-32
NZ_CP049046.1\|WP_164691810.1\|818236_818878_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|224885	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms].	2.78962e-32
NZ_CP049046.1\|WP_164691811.1\|820887_822321_+\|AAA-family-ATPase	gnl\|CDD\|274672	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model. [Mobile and extrachromosomal element functions, Prophage functions].	0
NZ_CP049046.1\|WP_023622534.1\|815156_815360_-\|phage-encoded-cell-division-inhibitor-protein	gnl\|CDD\|236900	PRK11354, kil, FtsZ inhibitor protein; Reviewed.	1.99121e-13

>NZ_CP049046.1|WP_015571544.1|819859_820006_+|hypothetical-protein
MAKNPRYYHTAVHKNITRDRFIRSVNPIVAEKMRAILEELKRKESGRG
>NZ_CP049046.1|WP_149912276.1|819227_819770_+|regulator
MHSLAYQHNTGIHPGAMINRAQAKAVPDHEKIRDAVRAWSSALDNQDVVSALIINEYREQGGNAISFPEDISRARQKLFRFLDNRFDSEQYRENVRQLTPAIMAVLPLEFRNRLAPKNDTMSLIASAMKECAEAKQAVLLDAPEHQKLKEVSEGIASLFRLMPEQVGPLMTMVTSMLGVM
>NZ_CP049046.1|WP_006809779.1|818981_819197_+|helix-turn-helix-transcriptional-regulator
MNNIANERKKLGITQSELAGSCGWNQSRLANYEAGIRAPDLDSCRRLVDAMNKLGSNTSLDALFPPKNNAA
>NZ_CP049046.1|WP_164691810.1|818236_818878_-|helix-turn-helix-domain-containing-protein
MRMNRIEDIAGRIKRLREDKGLSQKALAELCGWASQSRIGNYESGTRSVSVDDATVIAKALGVAPAELLFGDDYKGPYKPGDKYPVISKVQAGAWCEAVEPYTLKDIDLWLESDAHIQGEAFWLQVDGDSMTAPAGLSIPEGTFVLFDTGREAINGSLVIAKLSDSNEATFKKLVLDGAQKYLKGLNPQWPLVAVNGNCRIIGVAVETKMRLV
>NZ_CP049046.1|WP_045325426.1|817381_818143_-|KilA-N-domain-containing-protein
MTQFQLALIAREVDGEVIHLRTKDGYINATAMCKSAGKLLADYTRLKTTQDFFDELSRDMGIPISELIQSFKGGRAENQGTWVHPDIAINLAQWLSPKFAVQVSRWVREWMSGERAPAELPIHLKRYMTNRGRVPHTHFSMLNELTFNLVAPLEQAGYTLPEKMVPDISEGRVFSQWLRDNRGIEPKTFPTYNHEYPDGRTFPVRLYPNEYLADFKQHFNEVWLPQYAPKYFAERDQRALTLIEKIMLPDLDS
>NZ_CP049046.1|WP_023313997.1|817046_817244_+|hypothetical-protein
MVLDEERISMKIQAMGRAVMELSLADLPMTQQNIIDKLKQYRKETGNVIGKGANRDAAELVRKGQ
>NZ_CP049046.1|WP_164691809.1|815886_816525_-|hypothetical-protein
MCKRIDGEIIRGVINDTRLFSGIERVRSGRVQMFGKRIVQGGKCIQECDFEITPPERSWYSKEIDGVWHWVEGCDHCNGSPIKWAYVRCDKHDVCVDCGVDRERAAKSPGIDGIGAVWGCSDGWRCNDCQEQINKKRLAEAEARIVPDDEYDEMDFWHEDEARCPWCKAEISTDESYEACQEEHKCHECERHFKLTAEHSVTWTTIRAIKAA
>NZ_CP049046.1|WP_032667910.1|815511_815739_-|hypothetical-protein
MSNKTGGPAFPQSGVCTPEINSWDSEDFGGRGLTVRDYFAAKALQAIADPCHSPELFANRAYEIADAMLRAREAS
>NZ_CP049046.1|WP_023294196.1|815356_815515_-|hypothetical-protein
MTVTHNGKQYTAKKLNDNEWQLTSVSAPRDKLTLNRWQMHIAGLLEQVEVKV
>NZ_CP049046.1|WP_023622534.1|815156_815360_-|phage-encoded-cell-division-inhibitor-protein
MMHHYGYVEVNRGAVRPGMLVKHKDGMWTASANKRGKLYLHRGCERTFTRELLVEVYLDGRGGGLSH
>NZ_CP049046.1|WP_164691811.1|820887_822321_+|AAA-family-ATPase
MTAEFMAVPQNLEAEQSVIGGLLLDDDNSERVQKVLAMLKPESFYSRPHQLIFAEMRQMFRDNKPVDGLTLFDALEGKGLAEQVGGFAYLAEIAKNTPSAANIVAYAASVREAAMERYGINRLTEATELLYSRNGMSATQKYEAIQGIFTQLADHSKTGSRRGLRSFGEVMDDWVADLEKRFDPSGEQRGMSTGIPSLDRLLAPKGLVKGSLFVIGARPKMGKTTLYGQMAINCAIREKKPALMFSLEMPSDQILEKLVGQKSGVNPSIFYMPATDDADDQYQGDYDGDFKKAIATAGRLSEIDMLYIDDTPGLSLAHIVTECRRIKREKGCVGMILVDYLTLMTAEKADRNDLAYGMITKGLKNLAKELGCVVVLLTQLNRELEKRVNKRPLPSDSRDTGQIEQDCDYWVGIHREGAFDDSVPPGETELILRLNRHGSTGTVYCNQINGAIYDTDQQAAAAERRGREQQPKKKGGF
>NZ_CP049046.1|WP_164691812.1|822320_822665_+|winged-helix-turn-helix-transcriptional-regulator
MTITIRGQILAALRNNPGLSSARIATMIGMTTKKISGPLSTLFADGLIEFEGKHGQRLYRLTSYGMKYAPETIPAMPNGNSKLVQRTETNVICQECRNSPAMRRVLMVWGRVGV
>NZ_CP049046.1|WP_047727199.1|822661_822958_+|DUF4406-domain-containing-protein
MKIYIAGPMTGYENYNRPMFNAVAQQMLSGGHVALNPATLPDGLSQREYMDICLAMLRCADAIHMLHGWQESEGAVAEHAMAKKLGIKISYQFEGAVQ
>NZ_CP049046.1|WP_047727197.1|822954_823428_+|ead/Ea22-like-family-protein
MSNIDKHALREAAEKATPGNWWINSHGQAMVSFIDNDVLEVFATDNKRAAVRHDDTCNLSRWRNDNDATFIATADPATVLALLDELEAKDAQIANLTAERDALREGAMGDAKHSNTRAAADIYFQLVEECEIPAGGSLVEYVSELRERAAADKGAAS
>NZ_CP049046.1|WP_164691813.1|823424_824183_+|hypothetical-protein
MITLTKEWLLKTIAELEEERDAVPGVVNEDATMALAAMKLALASLEAESKPRQPELSHVIYHFRDWNEGFPIERFKADYVISWMLANYPPAQPAAVSVPDDVSGPLAHAYKELTPTFMRNHIDVFERYGIYPDGSAGIQAMRIALDGMNRRAAMLQGAENAESPTTMQTAPALDSSPKFAESPSGNSPVIPDCWCRTCRPVVLNDMRFVVCPDCGNKRCPRANDHKNSCTGSNEPGQEGSAYPASPQEVKGE
>NZ_CP049046.1|WP_049110418.1|824557_824857_+|hypothetical-protein
MEIDFLLIGKGLTGQIKRYDYPRDKLRVTELAVESANEPATVRPALVFDVVQHKYDGKTYAIAIGVSTDSVQINALIDRLKPQPIPESLLIKGAPSEQK
>NZ_CP049046.1|WP_049130133.1|824902_825403_+|hypothetical-protein
MNWEFTSADWNMAIAAITALGGLAAAYAAFLSRQTATKSLQLQSRMNAYESLKNCAERANGYAKGKQGSDWTFHDGANIVRSLRQAMKIIQDYSEYSDDKESEELKEYFINQINMELFEELNYNDAPGALFKGNGDWSAGVKLYEQWNDAIKFFNLMIATDADLAD
>NZ_CP049046.1|WP_164691814.1|825444_825693_+|DNA-polymerase-III-subunit-theta
MSKHNIAAKPKEEQDKVNVDLAASGVAYKERLNMPVIAEVVMREQPEHLRDYFLERLKFYREKSITLPKGSDPVYLKQEDGK
>NZ_CP049046.1|WP_109885434.1|825689_825950_+|hypothetical-protein
MRNVVAFVRGFPEHKMDGLLTTGLRSTRHTPVGNDQLVILHSQLSKSFFSDKAYMQVFDFSLDGADFTDFYLLASDEQGYIFQSNP
>NZ_CP049046.1|WP_032634774.1|826127_826583_+|hypothetical-protein
MTLPVDGIKLHRGNFAAIGQQIQPLLDAGQCFRLQVKPWRDKRSLSQNALSHMWYTEISEYLIARGKTFATPEWVKDAMKHTYLGYESKDRVDVVSGEVTTVQSLRHTSELETGEMYIFLCKVEAWAMNIGCHLTIPQSCEYQQLRDKQEA

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Crispr_ID: NZ_CP049046_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049046_2

1514419-1514580

Orphan

Consensus_repeat	Method
TCTCCCGTAGGCCCGGTAAGCGCAGCGCCACCGGGCAACGGTTTTAACCGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP049046_2

>merge|NZ_CP049046|2|1514419-1514580|CRISPRCasFinder
TCTCCCGTAGGCCCGGTAAGCGCAGCGCCACCGGGCAACGGTTTTAACCGGAGAAACGATAAAAAGCCGGGTGGCGGCTACGCCTTACCCGGCCTACATGTTCTACATATTCTCCCGTAGGCCCGGTAAGCGCAGCGCCACCGGGCAACGGTTTTAGCCGGA

>NZ_CP049046|2|2|1514419-1514580|CRISPRCasFinder
TCTCCCGTAGGCCCGGTAAGCGCAGCGCCACCGGGCAACGGTTTTAACCGGA	GAAACGATAAAAAGCCGGGTGGCGGCTACGCCTTACCCGGCCTACATGTTCTACATAT
TCTCCCGTAGGCCCGGTAAGCGCAGCGCCACCGGGCAACGGTTTTAGCCGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049046.1\|WP_023296571.1\|1520775_1521750_+\|DUF1852-domain-containing-protein	unknown	unknown	gnl\|CDD\|370181
NZ_CP049046.1\|WP_023303693.1\|1522802_1523735_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP049046.1\|WP_017693458.1\|1511908_1512991_+\|HlyD-family-secretion-protein	unknown	unknown	gnl\|CDD\|224482
NZ_CP049046.1\|WP_032619709.1\|1507586_1509026_-\|aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|182233
NZ_CP049046.1\|WP_015570569.1\|1505102_1505846_+\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NZ_CP049046.1\|WP_003857304.1\|1523833_1524268_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|377396
NZ_CP049046.1\|WP_015570570.1\|1506968_1507499_-\|cytochrome-b561	unknown	unknown	gnl\|CDD\|236921
NZ_CP049046.1\|WP_017693463.1\|1519373_1520060_+\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NZ_CP049046.1\|WP_015570577.1\|1518677_1519283_+\|FMN-dependent-NADH-azoreductase	unknown	unknown	gnl\|CDD\|234675
NZ_CP049046.1\|WP_023303698.1\|1510233_1511886_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP049046.1\|WP_032619706.1\|1503033_1504371_-\|TolC-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|273829
NZ_CP049046.1\|WP_023303699.1\|1509224_1510019_-\|YdcF-family-protein	unknown	unknown	gnl\|CDD\|224351
NZ_CP049046.1\|WP_023303692.1\|1524727_1525261_-\|DUF3833-domain-containing-protein	unknown	unknown	gnl\|CDD\|378992
NZ_CP049046.1\|WP_032619707.1\|1505859_1506927_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|183212
NZ_CP049046.1\|WP_023303697.1\|1512987_1514367_+\|efflux-transporter-outer-membrane-subunit	unknown	unknown	gnl\|CDD\|273830
NZ_CP049046.1\|WP_003857302.1\|1521770_1522799_+\|methionine-synthase	unknown	unknown	gnl\|CDD\|181659
NZ_CP049046.1\|WP_023303691.1\|1525739_1526960_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|225139
NZ_CP049046.1\|WP_164691868.1\|1484906_1502912_-\|BapA-prefix-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|380150
NZ_CP049046.1\|WP_017384500.1\|1520067_1520607_-\|DUF2058-domain-containing-protein	unknown	unknown	gnl\|CDD\|225664
NZ_CP049046.1\|WP_003857305.1\|1524272_1524731_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|377396

Protein	Function_ID	Function_description	E-value
NZ_CP049046.1\|WP_023296571.1\|1520775_1521750_+\|DUF1852-domain-containing-protein	gnl\|CDD\|370181	pfam08908, DUF1852, Domain of unknown function (DUF1852). This family of proteins are functionally uncharacterized.	0
NZ_CP049046.1\|WP_023303693.1\|1522802_1523735_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.17838e-73
NZ_CP049046.1\|WP_017693458.1\|1511908_1512991_+\|HlyD-family-secretion-protein	gnl\|CDD\|224482	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms].	1.21598e-94
NZ_CP049046.1\|WP_032619709.1\|1507586_1509026_-\|aldehyde-dehydrogenase	gnl\|CDD\|182233	PRK10090, PRK10090, aldehyde dehydrogenase A; Provisional.	0
NZ_CP049046.1\|WP_015570569.1\|1505102_1505846_+\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	1.67687e-73
NZ_CP049046.1\|WP_003857304.1\|1523833_1524268_+\|DMT-family-transporter	gnl\|CDD\|377396	pfam04657, DMT_YdcZ, Putative inner membrane exporter, YdcZ. DMT_YdcZ is a family of putative inner membrane exporters from both Gram-positive and Gram-negative bacteria.	2.22711e-23
NZ_CP049046.1\|WP_015570570.1\|1506968_1507499_-\|cytochrome-b561	gnl\|CDD\|236921	PRK11513, PRK11513, cytochrome b561; Provisional.	3.34238e-118
NZ_CP049046.1\|WP_017693463.1\|1519373_1520060_+\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	5.32781e-69
NZ_CP049046.1\|WP_015570577.1\|1518677_1519283_+\|FMN-dependent-NADH-azoreductase	gnl\|CDD\|234675	PRK00170, PRK00170, azoreductase; Reviewed.	1.54157e-130
NZ_CP049046.1\|WP_023303698.1\|1510233_1511886_+\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	9.85977e-23
NZ_CP049046.1\|WP_032619706.1\|1503033_1504371_-\|TolC-family-outer-membrane-protein	gnl\|CDD\|273829	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family. Members of this model are outer membrane proteins from the TolC subfamily within the RND (Resistance-Nodulation-cell Division) efflux systems. These proteins, unlike the NodT subfamily, appear not to be lipoproteins. All are believed to participate in type I protein secretion, an ABC transporter system for protein secretion without cleavage of a signal sequence, although they may, like TolC, participate also in the efflux of smaller molecules as well. This family includes the well-documented examples TolC (E. coli), PrtF (Erwinia), and AprF (Pseudomonas aeruginosa). [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Porins].	4.16719e-87
NZ_CP049046.1\|WP_023303699.1\|1509224_1510019_-\|YdcF-family-protein	gnl\|CDD\|224351	COG1434, COG1434, Uncharacterized conserved protein [Function unknown].	5.30194e-19
NZ_CP049046.1\|WP_023303692.1\|1524727_1525261_-\|DUF3833-domain-containing-protein	gnl\|CDD\|378992	pfam12915, DUF3833, Protein of unknown function (DUF3833). This is a family of uncharacterized proteins found in Proteobacteria.	3.41715e-91
NZ_CP049046.1\|WP_032619707.1\|1505859_1506927_+\|oxidoreductase	gnl\|CDD\|183212	PRK11579, PRK11579, putative oxidoreductase; Provisional.	9.00543e-148
NZ_CP049046.1\|WP_023303697.1\|1512987_1514367_+\|efflux-transporter-outer-membrane-subunit	gnl\|CDD\|273830	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined. [Cellular processes, Detoxification, Transport and binding proteins, Porins].	6.43453e-93
NZ_CP049046.1\|WP_003857302.1\|1521770_1522799_+\|methionine-synthase	gnl\|CDD\|181659	PRK09121, PRK09121, methionine synthase.	0
NZ_CP049046.1\|WP_023303691.1\|1525739_1526960_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|225139	COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane].	6.89487e-111
NZ_CP049046.1\|WP_164691868.1\|1484906_1502912_-\|BapA-prefix-like-domain-containing-protein	gnl\|CDD\|380150	NF012196, Ig_like_ice, Ig-like domain-containing protein. This variant form of the Ig-like domain occurs as a repeat in a number of large adhesins, including a 1.5-MDa ice-binding adhesin, the Marinomonas primoryensis antifreeze protein.	8.25225e-14
NZ_CP049046.1\|WP_017384500.1\|1520067_1520607_-\|DUF2058-domain-containing-protein	gnl\|CDD\|225664	COG3122, COG3122, Uncharacterized protein conserved in bacteria [Function unknown].	1.03752e-76
NZ_CP049046.1\|WP_003857305.1\|1524272_1524731_+\|DMT-family-transporter	gnl\|CDD\|377396	pfam04657, DMT_YdcZ, Putative inner membrane exporter, YdcZ. DMT_YdcZ is a family of putative inner membrane exporters from both Gram-positive and Gram-negative bacteria.	5.29058e-30

>NZ_CP049046.1|WP_023303697.1|1512987_1514367_+|efflux-transporter-outer-membrane-subunit
MTLRPIAGLLIMAFLAGCQSVDVEPAKSSLHIPAQWRATSGPASPTEQLWWRNFHDSNLNRYVDQALKNNSDVLIARERINEYQARVYAADGSLFPSLDAGVTGTRARSQSAATGLPVYGTLYKGSLTASYDVDIWGVNRSTSRAAEASLEAQKAAAAAADLTVASSVASGYVTLLSLDEQLRVTRSTLKSREEAFNLAKRQFETGYSSRLELMQSDSELRATRAQVPLLQHQIAQQENALSLLLGSNPGDVARGESFDALTPLKLPSQLPSTLLNRRPDIVQAERQLIAADATLAASRASLLPSINLTATGSVQDRTLSGLLDNPLQLWSVGGSILAPLLNRQALNAQVDISQSQRNQALYSYEKTVRNAFAEVNDSLDAITRYQEQLTELLAQQTVAQETLRIAQNRYRNGYSSYLDELDAQRTLFSVQTSVVQVKNNLLLAQIDLYKALGGGWSSA
>NZ_CP049046.1|WP_017693458.1|1511908_1512991_+|HlyD-family-secretion-protein
MSQQDAAKEQANTRKNVRVVSIFTAAAIGIVGVLVILYAWQLPPFTRHAQFTDNAYVRGQTTFISPQVNGYITEVHVQDFAQVKKGELLLQIDDRIYRQRVHQAEAQLAMKIAALNNNLQQRKSAEAVIAKNEAALKNARAQSLKTQADLKRVKELTADGSLSIRERDSALASAAQGSADIDQAKATLEMSRQDLQTVIVNRGSLEADVENAKAALELAQIDLQNTRIVAPRDGQLGQIAVRLGAYVTAGTHLTTLVPPQHWVIANIKETQLANLRVGQPVKFTVDALNDKAYQGRVESISPATGVEFSAITPDNATGNFVKIAQRIPVRIEVLGEPEAYRLLRPGMSVQVTIDTREAKQ
>NZ_CP049046.1|WP_023303698.1|1510233_1511886_+|MFS-transporter
MRLPQRDPYAPREWQPHEKPALLGSPSTPEHPTSKRIAYGVVGLLVCLTGALGNAVVTANLQNLQGTFGAWSTEIAWLPAVYVMTNVSINLLLVKFRQQYGLRAFTEGFLVLYVLVTFFHLFVNDLSSALMVRAAHGMVAAALSSLGIYYQIQAWPAKHRLKALTIGITGSSLAIPLARLFSTELLQLDEWRGLYFFELGLALISLACVMALKLPPGDRRKVFEKKDFITFFLLAPGMALLCAVLSLGRLDWWFEAPWIGWALALSLVLIVSAIVFEHNRNNPLLNTRWLSSGSIVRLGLIMLLIRIVLAEQNTGVIGWLQYVGLQNEQMTHLAWAIFAGIVCGIVTSCLTIKPTKLAWPIITSLALMIVASLLDSQSNNLTRPDQLIFSQFLLGFGSAFFLAPAMLAAIGGVIADPRNLVSFSVMFGMSQNLGGLLGSAILGTFQTWREKYHSSLLADQLTTLNPLVNERIQLYTQMYKSLIGDSSLLGTQAITQLQTVTALEANILAYNDTYLLTASIATATLVWILWRLLRLRITARMALKNATGNK
>NZ_CP049046.1|WP_023303699.1|1509224_1510019_-|YdcF-family-protein
MTMALFPCLPGTTLDAVNTVGAWLAQDDYQDNQPVDLVILAGNAVIPAIDAACKIAAEQGIPLIISGGIGHSTTFLYAAIAKHPRYNRIPTTGRAEAAILADIAREFWNIPAEHLHVEDQSTNCGENARFSRALMKQSGLNAARVLVVQDPTMQRRTMATFARVCRDEAASPAWVSHPGLTPVLQNSDDGLVFSGPVEGLWPVERYLSLVLGEFPRLRDDINGYGPAGRDFIAHVDIPADVDAAWQILRNDVILTDALVSRSLL
>NZ_CP049046.1|WP_032619709.1|1507586_1509026_-|aldehyde-dehydrogenase
MTVPVQHPMYIDGQFVAWQGDAWIDVINPATEEVISRIPDGSAEDTRKAIDAADRAQAGWEALPAIERASWLRKISAGIRERVSEISALIVAEGGKIQQLAEVEVNFTADYIDYMAEWARRYEGEIIQSDRPGENILVFKRALGVTTGILPWNFPFFLIARKLAPALLTGNTIVIKPSEFTPNNAIAFAKIVDEIGLPKGVFNLVLGRGETVGQELAGNPKVAMVSMTGSVGAGEKIMAAAAKNITKVGLELGGKAPAIVMDDADLELAVKSIVDSRVINTGQVCNCAERVYVQKGIYDRFVNRLGEAMKAVQFGNPAERTDIAMGPLINAAALERVEQKVARAVQEGAKVVLGGKAAEGKGYFYPPTLLLDVRQDMAIMHEETFGPVLPVVAFDTLEEALNMANDSDYGLTSSVYTQDLNVAMKAIKGLKFGETYINRENFEAMQGFHAGWRKSGIGGADGKHGLNEYLQTQVVYLQS
>NZ_CP049046.1|WP_015570570.1|1506968_1507499_-|cytochrome-b561
MRTKYTGLQISIHWLVFLLVIMAYCAMEFRGWFPRTDRPLINMIHVSCGISILVLMVARLLIRLKFPAPPIQPKPKAMITGLSHLGHLVIYLLFIALPLIGMVMMYNRGNDWFAFGLTMPHAAEGNFDLVDTLKEWHVTLANLGYFVIGLHAFAALMHHYFWKDNTLLRMMPKKRQ
>NZ_CP049046.1|WP_032619707.1|1505859_1506927_+|oxidoreductase
MNKVKTMNIALIGYGFVGKTFHAPLIQSVEGLKLAVVSSRDEEKVKRDLPDVLVVATPEEAIQHPDIDLVVIASPNATHAPLATLALNAGKHVVVDKPFTLDMQEARDLIALAQEKQRLLSVFHNRRWDSDFLGIKQVIEQGRIGKVKHFESHIDRFRPEVRVRWREQNVPGSGLWFDLGPHMIDQTLQLFGLPQSVQGNIATLRDGAEINDWAHVVLNYPEHKVVLHCSMLVAGGVARFTVHGDKASVVKAHIDQQEAQLLAGVVPGSESWGEDSDAMVLFNAQGEASAIPAPKGDQRQYYINVRDALNGKIDNPVHPVEALAVMAVLEAAVKSSETGSTLELDLTAQERAQLQ
>NZ_CP049046.1|WP_015570569.1|1505102_1505846_+|DeoR/GlpR-transcriptional-regulator
MHKTARQKYVLDIITEQGQASITELAERLQVSADTIRRDLTDLEKQGLAQKNHGGAIALNLSTMTRVSRNSLLPEIKQRLGKQVAQCVPAGSTLFLDAGSTLLAVASFLQGPLTIITPSLDIAQQVSDREDIDLILLGGKWDQKQRLFAGSATLSLLSRYRADIAILGACAIHAELGLSASQEADAEVKRAMLAASQAHWVVADHLKLNQCEPYLVSGLSEIHQLFLDRPWAELGDHSALQVTVGAH
>NZ_CP049046.1|WP_032619706.1|1503033_1504371_-|TolC-family-outer-membrane-protein
MKMKCNNRLLRLSVSLTLISLVVTAANANNGQTGISPVAAMTMKESILFALDRDPSVSQQAAQLGIGQAQIDEARSGWMPQIALNGSTGHSQTTDSSGSLRNSAAWGLSLTQLVYDFGKTNNSISQSSAQRDSYRYQLMSTMSAVAEKTALSYVEVKRYSDLLQAAKENVQALKNVEQLAKLRADAGVSSTSDELQTRTRIAGMQATVEQYNASLNSARARLAVLTGIQAERYSPVPGGLAVEPDSLNRIDYSLIPTVMAAQNMERSAQYGVETARSQHWPTLSLKGGRTRYESDNRAYWDDQIQLNIDAPLYQGGAVSARVRQAEGARAMASSQVDQARFDVLQKASVAQADWTGARGRMEAGKRQLENALRARDVYKNEYTLSKRSINDLLSVEQDVWSATSAKIMAEYDGWSAAINYASAVDNLLPLIGIEKNAAAKLPDLS
>NZ_CP049046.1|WP_164691868.1|1484906_1502912_-|BapA-prefix-like-domain-containing-protein
MSTAKVVDVIIRKTAEKTKLTGEGNLSVSISSPSVIEIQGSAQDVVRYVRQGNDLLIYMKDGSVIRCNNYFVEDTETHNHSELVFNDNQELTHISFADAGEASGVAATELTAQAAPISSIEPFLEQGSVLSDAPWGWIAGAALGGGAIGALLAHGGDGETKTKVIDNTKEVESATPTFLLTDNAGDKQGVLSAKAVTDDNTPTFSGTGQPGATIQVKDGSGSTIASTMVAKDGTWTVTLPTQADGEHTWSVVQIDGSKTTSAGSITVTVSTADASVTLATTAGDNVINASEQSAGFTLSGTSKNLAQGTALTVTLNGKTYSAEVGANGAWSVKVPAADAQALGDGTWTVNVSGKDAAGNTVSGSQTIGVDTASPVISVDTIAQDNIINAAEHNQPLTLTGKTDAEAGQIVTVTLNGKNHTATVGSDGTWSVTLPASEVQALANGEHTLTVNVSDKAGNGSSVTADFTVDTAAPVVTINTVAGDDILNTSEQGQAQIISGQANGAAAGDVVTVTVGGKTFTGVVQADGSWSVGVPASVIGALGEGSHSISVAVTDAAGNTGSATHGITLSGNPPEFTFDPISQDNVLNAQEAMQPLSLSGTSNLPNGSTVTVTLNNVNYQATLENGRWSVQVPVSDVLDLANTLYTVSVSGTDSVGNSGSAEANLLVDTALPQVIVNTFAGDNLVNNAEAAVDQTLSGRVTGAAAGDTVSVTVGGKSYTATVGSDLKWSVTIPSADLQAFGDGDLTFSASVTNAHGNTGTGERDININAELPGLRVNTISGDDVINAIEQQQDLAVTGSSTHLAEGTQITVTINNVEYVTTVNASGSWQIGVPAADLQAWTAGGMTVSVSAEDAWGNTVAAEHPIELDLNAVAVTIDTVTTDDMLNAAEKGADVTLSGQTQGVEAGQTVVVKFADQTFTAQVQQDGSWRLTVPASAMETLIDGRAQVSVSVTNVNGNSADASRVVIVDTQPPAITLDNLTDDNIINAAEAQQDLMLSGSTTAEAGQTVTVTLNGKSYQTTVQADGRWQLNVPAADVSALSDGNVTVTATVSDVAGNSSSADRVGLVDATVPQVTINDFVTDTNTVNQLAHAQAQILSGSVTGAAAGDLVIITINNVDYTTVVDAAGNWSLGLPASVVQGLTDGTWTINVSVTDQSGNTGSSSVDVVVNTVTPVIGINTLAADDVINAAEKGEDLLLSGTSNQPEGTTITVNLNGINYTATTDASGNWSVTVPASAVSALGEANYTVTASVTDNVGNSAAATHDVLVDSSLPVVTLNNFAGDNIVNAAEVAAGQTLTGKVSNAASGDTVTIILGGQTYTATVQDDLTWSLPLTQSQLTALGNGDLTVSASVTNAHGNTGSSSLDVTIDAQLPGLRIDTVAGDDVINVIEHAQNLVIAGTSTDLAAGSTVTVTINGKSYSASVLADGSWQAAVPAADVSRWADGSLTISASAQDTSGNPVNIGTVVDVDLAPVAISINSVTDDNVLNAAEKGQDLVLSGSSSNVEAGQTVTIIFAGKTWTTTVDANGDWTCTVPAADLSGLKDGDASVQVSVTNVNGNAASSSQAFSVDTAAPAVTINTISGDNMLNAAEAAQDLTLSGTSTAEAGQTVTVTFNGNQYTAQVQANGSWTLDVPAADLAGIADGSAAVTVTVSDKAGNPASAGASVLVDTTVPQITFNIVAGDDIVNIAEHGQALIVTGKVTGAQAGDVITLTLNGKDYTAMLDASGNWSVGVPATDVGALANGDQTISATLTDKAGNSTSATHAFDVSLTAPVITINTLAVDDVINATEKGQDLLISGTSNQPDGTRITVTLNGISYAATTDASGNWSVTLPAANVSVLGEASYSVTASVTDTAGNSANTSHSVLVDSALPQVTINAVATDDVINAAEVASGQTLSGKVSGAASGDTVTIGIGGNTYTATVQDDLSWSVNVASDVLTAIGNGDLTVTASVTNGHGNTGTGERDITIDASLPGLRVDTVAGDDVINSIEHGQNLIITGSSDGLASGSALTVTVNGKIYAATVLADGTWTAAIPAADVGALSAGTITVTVDGQSAAGNPVSISHDVKVDLAAVAISINPIASDDVINAAEKGADLVLSGSTTNVEENQTVTITFGGKLYTATVDASGNWTATVPSADLGGLKDGDASVQVSVTNVNGNSASAGREYSVDATAPTVSIEIVSDNNIINAAEAQQDLVVNGVSNAEAGQTVTVTLNGVDYTTTVQANGSWSVTVPSADIGAITDGDYTITAAVADKAGNPASADRDVLVDTTVPQLTINTVSDDDVINSAEHAQALIVTGSVTGAAAGDVVTVTINNKDYTATLDTSGRWSVGVPAADVSALAAGDYTITAALTDKAGNSNSTTHEVEVNLTAPVLTIDTVSGDDVINSSEKTQDLTITGTASGLAAGAVVTVMLNGKAYSATVDTNGQWTTTVPASEVGQLGEALYTVSASATDSVGNSSSTSHTVNVESVLPGVIINTVAGDDVINAAELATGQTISGTVVNAEAGNTVTVSVGGHSYTATVQDNLTWSVSVPESVLTALGNGDLTVTASVTNGVGNSGSGERDITIDANLPGLRVDTVAGDDVINSIEHGQNLIITGSSDGLTAGTALTVTVNGKTYPATVLADGTWSAAIPSADVSALAAGTVTVNVEGQSSAGNPVTINHDVTVDLANVAISIDAIASDDVINAAERGADLVLSGTTSNVEENQIVTITFGGKNYTATVDAEGKWTATVPSADLTGLKDGDASVQVSVTNVNGNSASAGREYSVDATAPSVTINMIATDDILNASEAQSDLAISGTSTAEAGQTVTVSLNGKDYTTTVSANGSWTLNVPAADLAGLTDGSVTVTAAVSDKAGNPASVDHNLTVDVTVPAVTIHTVAGDDVINVAEHNQAQIISGSATGAAAGDKVTVTIGGQSYTTVLDAAGNWSVGVPASVISGLSDGSVTVTASVTDAAGNTGSGTHNVTVDTGLPSVSFNAISDDNVLNAVEKGQDLSVSGTSANLAEGTVVTVTLNGKNYTATTAADGTWSLTVPAADLAGLGQASYTLNATATNGVGNSVSSSANLLVDTALPTVTINTVAGDNVINAAEVAAGQTLSGTVANAEAGNTVTVTIGGHSYTATVQNNLSWSVNVPSDVLTALGNGSLSVTATVTNGHGNTGTGEREIAIDANLPGLRVNTVAGDDVVNTIEHAQNLIVSGSSDGLAPGTALTVTVNGKDYAATVLADGTWSAAIPSADVSAWPEGTVKISVTGDSAAGNPITISHDVTVDLTTVAISINALATDDVINAAEKGADLVLSGVTTNVEAGQTVTISLNGRIYTTTVDDSGNWTYTVPSADLAGLKDGDASVQVSVTNVNGNSASAGREYSVDATAPSVTINTIATDDILNATEAQSDLAISGTSTAEAGQTLTVSLNGKDYTTTVSANGSWTLNVPAADLAGLTDGSVTVTASVSDKAGNPASVDHTLTVDVTVPAVTIHTVAGDDVINVAEHNQAQIISGSATGAAAGDTVTVTIGGQSYTTVLDAAGNWSVGVPANVISGLSDGSVTVTASVTDAAGNTGSGTHNVTVDTGLPSVSFNAISDDNVLNAVEKGQDLSVSGTSANLAEGTVVTVTLNGKNYTATTAADGTWSLTVPAADLSGLGEASYTLSATATNGVGNSISTTANLLVDTALPTVTINTVAGDNVINAAEVAAGQTITGKVANADIGNTVTVNIGGNTYTATVQSDLTWSVNVPESVLTALGNGDLTVSATVTNDHGNTGTGERDITIDASLPGLRVDTVAGDDVINSIEHGQNLIVTGSSDGLAAGTTLTVTVNGKTYAASVLADGTWSAAIPAADVGALAAGTVTVTVAGQSAAGNPVSISHDVTVDLAAVAISIDAIATDDVINAAEKGADLVLSGSTSNVEENQTVTITFGGKSYTAKVDADGNWTATVPSSDLAGLKDGDASVQVSVTNVNGNSASAGREYSVDATAPTVTIDTVAGDNVINGSEAAAGVAISGTTTAEVGQTVTVNLGGNSYTAQVQQGGVWSINVPAADLSTLADNGYTVQVSVSDAAGNPGSAGKAITLDTTPPTVSFNVVAGDDVINSVEHGQAQVISGTATGASVGDKLVITIGSNQYTTTVDASGKWSVGVPASDISALTDGTVTLSATITDSAGNSSTQTHDVVVNTASVALTVNTLSGDDVINAAEAGASLVINGSSAQFANGTQVTITLNGKSYTATIQSDGSWTTTVPAADVGTLADGASYQVSVSAQDSAGNSASATHTISVDTTAPVISVNTLSGDDVLNAAEAQQPLTVHGSSSAEAGQTVTVTLGGKTYTALVANDGTWTLDVPAADLANLSEGALTVTASVNDKAGNNGQTTHTLTVDTVAPAVTISTVADDDIVNNAEQLAGQTISGTTTAEQGQTVTVSFNGHSYQATVAANGSWSVFVPGRDFLGLSDGDYTITATVSDKAGNPGSATHDVTLNGDVPTIAINTFAQDDIVNAAEHGTPLVISGTTDAPTGQTVTITLNGKTYTATVQNDGTWSYTVGSADVTALADGGSYVINAQVSNAIGNSASDNHTVTVDLTAPSMGISIDSLQNDTGLSANDFITNDSQVVVNGSLTAQLGNNEKAQISLDGGTTWIDLTVTGTTWRYTDGRTLTDGTYQYQVRVIDNAGNVGATDSQDVVIDLTKPAAATITVDSVSQDTGLSDSDFITSDNQISLKGTLGAALGSGDHAQISLDGGATWTDVSVSGLSWTYVDGRTLADGDYNYQLRVIDDAGNISATTSQVVTIDTVAPDASKTIAIDSISDDTGLSSSDFITNDTSLTLHGSLGATLADGEYAQISIDGGVTWQNVIVTGNSWYYVDGRTLGNQTYDYYVRVVDAAGNVGASAHQQVTVDTVAPDAAITVTVDNITVDTGFDNNDFLTSSTSYTLNGTLGAELGAGEYVQVSMDGGTTWVYATVSGTRWSYNDTRTLADGDYRYQVRVVDQAGNVGATTTQDVTVDTQAPQYGITIDSISEDTGQSGSDFITMDTSLTINGSLGSALASDERVQISLDGGNTWIDTTVTNQRWSYTDTRDLADGDYTYQVRIIDQAGNVGSTSSQVVTVDTTPPDTVGTVVSYTDGEGERTGTYGASVATDDTSPLINGTLNRAPEDGEIVQLYRDGILLGQVTMNGSASWSYQDNGLLDGNHTYILRVTDKAGNYTESDGFVLNVDTSIPTTTAAITAQTTSDTTPIVSGTVSADLVNGEYLVVTVNGKTYTSQTGGAVVVDPDHNTWYLQIPDSDALSVASYDVTAQVKSSAGNGNTTGTATGSLVIDTTSVNTDWATTAGNSNNSTMTLGMNSSGLWNIIANGQSYSSSDDSTYAGNTLTNTRSYYVVSQTAADFDRNGTQDIFATENTYAGSTQVMWTYDGSSYTASQLAMGTTIWYGGVIAYDKTGDGYLDLAYGDAGMDSLTYLVNTNGVLSPDGTGGEGGFYGQFDSGREISGVDLNNDGTVDIVQHTNRSGAYSLTVINNNGNGTLSIGQNLTNVFVANASNTTTAASMTWADFNGDGYMDLYLGSSYNNNGGVIYYNDGTGQLSTTKSAVEASNATAGYLSVAVDWNGDGQMDIIKLSTYGSSQTATLFTNNGYGSTWTSSQLASGLANVTGVAAVDYNWDGAQDLLVSQQNGKVVLVQNNAEIADGTAMHLHIVDSEGINAYYGNTVNLYNAAGVLVASQIINAQSGIGSNDTSALVSFYGLDPNETYSAEIVKITNGVSDNVTWTGLDAGNGKEGYVLTAEAATGGHSGTITGTGYNDTFIAEDGTYTYNGSGGWNTHSDYDTWSNTGGMDVVDYRNATSGITVDLRLSTAQDTGFGTTRLLNIEGINGSDYDDVITGNSGDNQFEGRGGNDTFNIGSGGHDTLLYKLINASDATGGNGSDVVNGFTVGTWEGTADTDRIDLRDLLSDSGYTGTGSASYVNGVATLDSSAGNIADYIRVVQNGSNTEIQVDLDGTGGQFTPTTLVTLNGVQTDLATLLANHQLLIA
>NZ_CP049046.1|WP_015570577.1|1518677_1519283_+|FMN-dependent-NADH-azoreductase
MSKVLVLKSSILAGYSQSGQLSDYFVEQWREQHSADEITVRDLAANPIPVLDGELVGALRPSDAPLTPRQQEALALSDELIAELQAHDVIVINAPMYNFNIPTQLKNYFDLVARAGVTFRYTENGPEGLVKGKRAVVLTSRGGIHKDTPTDLVAPYLTLFLGFIGITDVNFVFAEGIAYGPEVATKAQTDAKAAIDSLVAA
>NZ_CP049046.1|WP_017693463.1|1519373_1520060_+|RluA-family-pseudouridine-synthase
MSVIIDTFIAPPCHDNIEILWQDEHLLLINKPSGLLSLSGKNPQNLDSVHHRLVQTFPGCTLVHRLDFGTSGLMVIARNKAINAALCHQFSQRAVNKVYTALLCGHVEQDEGTVDAPIAKDPALFPLMTICARTGKPARSRYRVVERIYQDTTMPLTRVELTPETGRTHQLRIHCQQLGHPILGCDLYGGLEWPGAEETPRLMLHASALNFIHPLSGETMNARHAAPF
>NZ_CP049046.1|WP_017384500.1|1520067_1520607_-|DUF2058-domain-containing-protein
MTKLTLQEQMLKAGLVSSKKMAKVQRTAKKSRVQAREAREAVEENKKAQLERDKQLSEQQKQAVLAKEFRAQVKQLIEMNRITVAKGNITFNFTDGNLIKKIEVDKQTQTQLINGRLAIARLVINANGDCDYAIIPAVVADKIAQRDADSIVLNSALSQEEQDEDDPYADFKIPDDLMW
>NZ_CP049046.1|WP_023296571.1|1520775_1521750_+|DUF1852-domain-containing-protein
MSQAFTFTLKRSCFDENYNPSENTRTTTNFANLARGEKRQENLRNTLVMINNRFNALASWDNPKADRYAVELEIISVDMNIGGDFTFPAIEILQTTIVDKKTHERIEGIVGNNFSSYVRDYDFSVLLLEHNKDRARFSLPENFGELHGNIFKSFVHSAEYQANFKKAPVICLSVSSKDTYRRTGNHHPVLGYEYQPDGESLTEQYFAKMGLKVRYFMPENSVAPFAFFFTGDLLRDYTNLELIGTISTMETFQKIYRPEIYNANSAAGQCYQPDLNQQDHSLTKIVYDREERSRLAIEQGKYTEERFIKPYKTLLEQWSQHFTL
>NZ_CP049046.1|WP_003857302.1|1521770_1522799_+|methionine-synthase
MKTLLPTSTAGSLPKPTWLAQPETLWSPWKLQDEELLAGKQDALRLSLDEQIRAGIDIVSDGEQTRQHFVTTFIEHLSGVDFENRQTVRIRNRYDASVPTVVDAVARQKPVFVDDAKYLRQLTDKPIKWALPGPMTMIDTLYDAHYKSREKLAWEFAKILNQEARELEAAGVDIIQFDEPAFNVFFDEVNDWGIAALERAIEGLKCETAVHICYGYGIKANTDWKKTLGSEWRQYEEAFPKLQTSKIDIISLECHNSRVPMDLLELIRGKKVMVGAIDVATQTIETPEEVADTLRKALQFVDADKLYPSTNCGMAPLSRQVANGKLKALSAGADIIRRELAR
>NZ_CP049046.1|WP_023303693.1|1522802_1523735_-|LysR-family-transcriptional-regulator
MMDAGHISIRALLIFIDVYETQNFSVVARREGISASQVSRVIHQLEDALGQQLFYRNTRAIMPTESGHLFVRYARAMAGNMEDARRELDERAREPSGTLRINGPVFFGQRHIAPGLPGLLARYPRLSIELTLTDDFIDPHRDAADVIFRIGALTDSSFHARVFGQQFYHLAASPDYLQKHGAPEGPDDLSRHHCLVYRGSSGPNRWLIRQPGEAWVHYPIVPLMTSNNAETLLIAALGGMGVVLFPDWMVSERLKSGELVALLPEMECSINTEPLTIAAIYPNARHPPLNVRAVIDYYIERFGTPLYWQT
>NZ_CP049046.1|WP_003857304.1|1523833_1524268_+|DMT-family-transporter
MHIILILLVIAGGMGLSVEAGLLGPLGAEVGDLWAAFSIFSVGTGLTFLLMLFFSPRNSPSFFAQPSWHLLGGVLGPVYVIILTIATPAIGIAMTMIGILAGQVFKSLIIDHYGLLGTPHRRIDTKRIIALGFIIAALILVAQG
>NZ_CP049046.1|WP_003857305.1|1524272_1524731_+|DMT-family-transporter
MTVIMIILAVIGGATLSIQAAINGQLGSSVGVFKSAFLTFSVGALVTALLIFFFEPKQAVSLMDVPKWQLLGALCGVPYIVIMVLAVQRIGTAVATVAVILGQLAMSMLIDNFGWLNNEAIPFSVSRFGAVVCLSIALFFIYSSSKPQPEED
>NZ_CP049046.1|WP_023303692.1|1524727_1525261_-|DUF3833-domain-containing-protein
MKRFLLMALALTMLVAGCSTEVTEYRQQQPRLDIFTYFQGKTEAWGMVQDRSGKQIRRFHVEIAGDVIGDTLTLNEHFVYDDGEKQQRVWHIRRVGQNRYEGTAGDIEGGATGQAAGNALNWRYSMNVKADGKTWLLHFDDWMYLQDSTRLFNKTEMKKFGVTVATVTLFFTRKEGG
>NZ_CP049046.1|WP_023303691.1|1525739_1526960_-|class-I-SAM-dependent-methyltransferase
MTNPVFALEPDIPRNVRVARWLLFRLLNGLHGGSLTLREGAQTFQFGDASAALHAEVQVLAPGVYWRILTGGSLAAAQAWMDGDWETPHLTPLLELIARNSQILGKLEKGFRLLGKPVERLRHWMRRNSRAQARENIAAHYDLGNAFYAHFLDEHLLYSSALFSGDEQDLTAAQQAKMARLCDQLALTANDHLLEIGTGWGAMAEYAARHYGCRVTTTTLSQEQYHWATARIARAGLQDRVEVLLCDYRDLSGVYDKLVSVEMIEAVGQRYLPTFFRTCQARLRPGGRMAIQAITIQDQRYRDYSKSVDFIQRYIFPGGFLPSITAMNELMTRHTDFVVRNLFDMGPDYARTLAHWRQRFVHAWQEIEKLGFDDRFRRMWLYYLGYCEAGFNARTISVVQLTAERV

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Crispr_ID: NZ_CP049046_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049046_3

2143875-2143963

Orphan

I-F

Consensus_repeat	Method
ATTTCTAAGCTGCCTGCCCGGCAGTGAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP049046_3

>merge|NZ_CP049046|3|2143875-2143963|CRISPRCasFinder
ATTTCTAAGCTGCCTGCCCGGCAGTGAACAAAACACGCTGGCGCGTGTCGGTGTCGCCGTATTTCTAAGCTGCCTGCCCGGCAGTGAAC

>NZ_CP049046|3|3|2143875-2143963|CRISPRCasFinder
ATTTCTAAGCTGCCTGCCCGGCAGTGAAC	AAAACACGCTGGCGCGTGTCGGTGTCGCCGT
ATTTCTAAGCTGCCTGCCCGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049046.1\|WP_015570988.1\|2139690_2140590_+\|lysine-exporter-LysO-family-protein	unknown	unknown	gnl\|CDD\|225287
NZ_CP049046.1\|WP_023303380.1\|2155146_2155944_-\|prepilin-peptidase	unknown	unknown	gnl\|CDD\|224900
NZ_CP049046.1\|WP_154294646.1\|2143714_2143852_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049046.1\|WP_017693707.1\|2135916_2136873_+\|DUF535-domain-containing-protein	unknown	unknown	gnl\|CDD\|377343
NZ_CP049046.1\|WP_023296208.1\|2145999_2147001_+\|low-specificity-L-threonine-aldolase	unknown	unknown	gnl\|CDD\|236710
NZ_CP049046.1\|WP_023303381.1\|2152189_2154892_-\|PKD-domain-containing-protein	unknown	unknown	gnl\|CDD\|119365
NZ_CP049046.1\|WP_015570985.1\|2134641_2135757_-\|macrolide-transporter-subunit-MacA	unknown	unknown	gnl\|CDD\|183211
NZ_CP049046.1\|WP_023303384.1\|2142397_2143366_+\|NADH-oxidoreductase	unknown	unknown	gnl\|CDD\|236735
NZ_CP049046.1\|WP_023303382.1\|2147011_2148448_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187556
NZ_CP049046.1\|WP_017693708.1\|2136869_2138528_-\|ATP-dependent-endonuclease	unknown	unknown	gnl\|CDD\|226121
NZ_CP049046.1\|WP_017693713.1\|2149700_2151512_-\|PKD-domain-containing-protein	unknown	unknown	gnl\|CDD\|381595
NZ_CP049046.1\|WP_017384854.1\|2151646_2152087_-\|type-III-secretion-system-invasion-protein-IagB	unknown	unknown	gnl\|CDD\|185228
NZ_CP049046.1\|WP_017384847.1\|2140734_2142387_+\|hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|235391
NZ_CP049046.1\|WP_017693711.1\|2144242_2145961_+\|ubiquinone-dependent-pyruvate-dehydrogenase	unknown	unknown	gnl\|CDD\|181661
NZ_CP049046.1\|WP_015570984.1\|2132704_2134645_-\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	unknown	unknown	gnl\|CDD\|182528
NZ_CP049046.1\|WP_026080729.1\|2138818_2139514_+\|aquaporin-Z	unknown	unknown	gnl\|CDD\|235453
NZ_CP049046.1\|WP_017384852.1\|2148540_2149554_+\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223528
NZ_CP049046.1\|WP_017384857.1\|2155940_2156426_-\|type-II-secretion-system-protein-M	unknown	unknown	gnl\|CDD\|377391
NZ_CP049046.1\|WP_032103415.1\|2156422_2157556_-\|general-secretion-pathway-protein-GspL	unknown	unknown	gnl\|CDD\|273768
NZ_CP049046.1\|WP_006809408.1\|2132412_2132634_+\|cold-shock-like-protein-CspD	unknown	unknown	gnl\|CDD\|184960

Protein	Function_ID	Function_description	E-value
NZ_CP049046.1\|WP_015570988.1\|2139690_2140590_+\|lysine-exporter-LysO-family-protein	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	2.69399e-117
NZ_CP049046.1\|WP_023303380.1\|2155146_2155944_-\|prepilin-peptidase	gnl\|CDD\|224900	COG1989, PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	1.87481e-40
NZ_CP049046.1\|WP_017693707.1\|2135916_2136873_+\|DUF535-domain-containing-protein	gnl\|CDD\|377343	pfam04393, DUF535, Protein of unknown function (DUF535). Family member Shigella flexneri VirK is a virulence protein required for the expression, or correct membrane localization of IcsA (VirG) on the bacterial cell surface,. This family also includes Pasteurella haemolytica lapB, which is thought to be membrane-associated.	3.82706e-128
NZ_CP049046.1\|WP_015570984.1\|2132704_2134645_-\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
NZ_CP049046.1\|WP_023303381.1\|2152189_2154892_-\|PKD-domain-containing-protein	gnl\|CDD\|119365	cd06548, GH18_chitinase, The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.	1.3015e-124
NZ_CP049046.1\|WP_015570985.1\|2134641_2135757_-\|macrolide-transporter-subunit-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
NZ_CP049046.1\|WP_023303384.1\|2142397_2143366_+\|NADH-oxidoreductase	gnl\|CDD\|236735	PRK10684, PRK10684, HCP oxidoreductase, NADH-dependent; Provisional.	0
NZ_CP049046.1\|WP_023303382.1\|2147011_2148448_+\|SDR-family-oxidoreductase	gnl\|CDD\|187556	cd05245, SDR_a2, atypical (a) SDRs, subgroup 2. This subgroup contains atypical SDRs, one member is identified as Escherichia coli protein ybjT, function unknown. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that generally matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	4.06263e-140
NZ_CP049046.1\|WP_017693708.1\|2136869_2138528_-\|ATP-dependent-endonuclease	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
NZ_CP049046.1\|WP_017693713.1\|2149700_2151512_-\|PKD-domain-containing-protein	gnl\|CDD\|381595	cd00325, chitinase_GH19, Glycoside hydrolase family 19, chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Glycoside hydrolase family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases, but they are smaller in size due to certain deletions. Despite lacking any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different enzyme groups arose from a common ancestor glycohydrolase antecedent to the prokaryotic/eukaryotic divergence.	2.7565e-72
NZ_CP049046.1\|WP_017384854.1\|2151646_2152087_-\|type-III-secretion-system-invasion-protein-IagB	gnl\|CDD\|185228	PRK15328, PRK15328, type III secretion system invasion protein IagB.	5.32861e-87
NZ_CP049046.1\|WP_017384847.1\|2140734_2142387_+\|hydroxylamine-reductase	gnl\|CDD\|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0
NZ_CP049046.1\|WP_017693711.1\|2144242_2145961_+\|ubiquinone-dependent-pyruvate-dehydrogenase	gnl\|CDD\|181661	PRK09124, PRK09124, ubiquinone-dependent pyruvate dehydrogenase.	0
NZ_CP049046.1\|WP_023296208.1\|2145999_2147001_+\|low-specificity-L-threonine-aldolase	gnl\|CDD\|236710	PRK10534, PRK10534, L-threonine aldolase; Provisional.	0
NZ_CP049046.1\|WP_026080729.1\|2138818_2139514_+\|aquaporin-Z	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	1.82782e-146
NZ_CP049046.1\|WP_017384852.1\|2148540_2149554_+\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|223528	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	1.05058e-52
NZ_CP049046.1\|WP_017384857.1\|2155940_2156426_-\|type-II-secretion-system-protein-M	gnl\|CDD\|377391	pfam04612, T2SSM, Type II secretion system (T2SS), protein M. This family of membrane proteins consists of Type II secretion system protein M sequences from several Gram-negative (diderm) bacteria. The precise function of these proteins is unknown, though in Vibrio cholerae, the T2SM (EpsM) protein interacts with the T2SL (EpsL) protein, and also forms homodimers.	2.13746e-29
NZ_CP049046.1\|WP_032103415.1\|2156422_2157556_-\|general-secretion-pathway-protein-GspL	gnl\|CDD\|273768	TIGR01709, Type_II_secretion_system_protein_L, type II secretion system protein L. This model represents GspL, protein L of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking].	6.87481e-40
NZ_CP049046.1\|WP_006809408.1\|2132412_2132634_+\|cold-shock-like-protein-CspD	gnl\|CDD\|184960	PRK14998, PRK14998, cold shock-like protein CspD; Provisional.	9.14248e-48

>NZ_CP049046.1|WP_154294646.1|2143714_2143852_+|hypothetical-protein
MQASAFAFGTSVGPVSVSATGLFAGWHYVYPAYIVPTACTAVNRG
>NZ_CP049046.1|WP_023303384.1|2142397_2143366_+|NADH-oxidoreductase
MTMPTSQCPWRMQVHHIHQETPDVWTLSLLCHDYYPYRAGQYALVSVRNSADTLRAYTISSTPGVSEYITLTVRRIDDGAGSEWLTRDVKRGDYIWLSDAQGEFTCDDKTEDKFLLLAAGCGVTPIMSMRRWLAKYRPQADVQVIFSVRSPEDVIFAEEWRNYPVTLVAEHNATHGFVAGRLSRELLQSVPDIANRTVMTCGPAPYMEIVEKEVKALGVTRFFKEQFFTPVAEAATSGMKFTKLQPAQTFFGRVGTTLLEALESNNVPVAAACRAGVCGCCKTKVVSGEYTVTSTMTLTDAEIAEGYVLACSCHPQGDLVLA
>NZ_CP049046.1|WP_017384847.1|2140734_2142387_+|hydroxylamine-reductase
MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIAALQGLSAWAFKAREYGIVDHYVDSFAPRAFFSTLTNVNFDSPRIVGYAREAIALREALKAQCLNADASARVDNPMAELQLVSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLKGAAAYMEHAHVLGQYDNAIYAQYHKIMAWLGTWPSDMNALLECSMEIGQMNFKVMSILDAGETSTYGHPTPTQVNVKATEGKCILISGHDLKDLYNLLKQTEGTGVNVYTHGEMLPAHGYPELRKFKHLIGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVGAYDDRIWTRSIVGWPGVSHLEGDDFGPVIAQAQQMAGFPYSEIPHLITVGFGRETLLGAADSLIDLVSREKLRHIFLIGGCDGARGERNYFTDFATRVPEDCLILTLACGKYRFNKLDFGNIEGLPRLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVTNIVTGPTAPGFLTPDLLAILNEKFGLRSVTNVEDDMKQLLSA
>NZ_CP049046.1|WP_015570988.1|2139690_2140590_+|lysine-exporter-LysO-family-protein
MFSGLLIILLPLIVGYLIPLRHESALKLINRFLSWIVYVILFFMGISLAFLDNLATNLLSILHYSAVTVVVILLCNIAALFWLERTIPWKNHHHQEKLPSRIAMALESLKLCGVVVLGFLLGLTGWAFLQHATEASEYTLIFLLFLIGIQLRNNGMTLKQIVLNRRGMMVAVIVVASSLAGGVINAFILDLPLKTSLAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLVRRSRSTALGLCGATSMDFTLPVLQRSGGLEMVPAAIVHGFILSLLVPILMAFFSA
>NZ_CP049046.1|WP_026080729.1|2138818_2139514_+|aquaporin-Z
MFRKLAAECFGTFWLVFGGCGSAVLAAAFPELGIGFVGVALAFGLTVLTMAFAVGHISGGHFNPAVTLGLWAGGRFPAKDIIGYIIAQVIGGIIAAAVLYVIASGKAGFDAAASGFASNGFGEHSPGGYSMLSAIVIEIVLTAGFLLVIHGATDKYAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWLFWVMPIIGGILGGVLYRTLLEKRD
>NZ_CP049046.1|WP_017693708.1|2136869_2138528_-|ATP-dependent-endonuclease
MLLERVEIVGFRGINRLSLQLEQNNVLIGENAWGKSSLLDALTLLLSPEENLYHFVHDDFWFPPGDVNGREKHLHIILTFRESEPGRHRVRRFRPMSPCWVPCEDGFQRIFYRLEGEMAQNDGVLTLREFLDEKGNPIPLDNIDELARHLIRLSPVLRLRDARFMRRIRNGTVPNMPEVEVTARELDFLARELVSRPQNLTDGQIRQGLSAMVQLLEHYFSEQGTGQARHRLMRRRSHDEQRSWRYLDIINRMIDRPGGRTHRVILLGLFSTLLQAKGTVRLDRDARPLLLVEDPETRLHPIMLSVAWHLLNLLPLQRVTTTNSGELLSLTPVEYVCRLVRESSRVTAYRLGPGGLNAEDGRRIAFHIRFNRASSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLIKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREEEREHLTALPAMDMEHFMYRQGFDDVFHRVAMIPVDVPMNMRRVIAKAIHRSSKPDLAIEVATEAGRRGVESVPTLLRKMFSRVLWLARGRAD
>NZ_CP049046.1|WP_017693707.1|2135916_2136873_+|DUF535-domain-containing-protein
MSSIVDTPYSTLPQPKSGWQLFKSLASGSLTPGLAWQNPAYRRKFMLRSLATPFTTARLLGNLAKQPRLMQILRVQPGLPCRLHRPWLTVNMGRQTTLDALNDHYEMMSRHLPASLLNGYLSSQGITLVTLTGKEEQQFSVRLSADAFLDKEGEATLTFCDHQNTVLAELTFTLCTYQGKPTLFIGGMQGAKAHVPHEHIQLATKACHGLFPKRLLVEAVMTLAGAFPVEQILAVSNATHIYRSWRYRKKKEGKLLADYDSFWRSLGGQQQDNGNFALPLTMPRKPMEEIASKKRSEYRRRYALLDSLIQQVSQATAR
>NZ_CP049046.1|WP_015570985.1|2134641_2135757_-|macrolide-transporter-subunit-MacA
MNLKGKRRKLFLLLAVVVLAGGFWLWKVLNAPVPQYQTLIVRPGELQQNVLATGKLDALRKVDVGAQVSGQLKTLSVEIGDKVKKGQLLGVIDPEQAQNQIREVEATLMELRAQRAQAQAERNLAQVTLTRQQALAKTQAISKQDLDTAATELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTQIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPQTRYEGVLKDILPTPEKVNDAIFYYARFEVPNPQGVLRLDMTAQVHIQLTGVKNVLTVPLSALGESAGDNRYKVKVLRNGESREREVVIGARNDTDVVVVKGLEEGEEVVTSETLPGAAQ
>NZ_CP049046.1|WP_015570984.1|2132704_2134645_-|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB
MTALLELNDIRRSYPSGDGPVEVLKGISLRVEAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGTDVSTLDGDALAKLRREHFGFIFQRYHLLSHLSAAQNVEVPAVYAGVERKKRLERAKALLTRLGLAERVDYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDQGHTVIIVTHDPQVAAQAERIIEIHDGELVSNPPPRQSRAAAPKEALPASTGWGQFSSGFREALTMAWLAMAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQLVLADIRAIGTNTIDVYPGKDFGDDEPQYQQALKYDDLAAIQKQPWVNSATPAVSQNLRLRYGNIDVAASANGVSGDYFNVYGMTFSEGATFNAEQLAGRAQVVVLDANSRRQLFPNKTRVVGEVILVGNMPATVIGVAEEKQSMFGSSKILRVWLPYSTISGRIMGQSWLNSITVRVKEGYDSALAEQQLERLLTLRHGKKDFFTWNMDGLLKTAEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGAMGIALSMMIAFALQLFLPGWEIGFSPMAILTAFLCSTFTGILFGWLPARNAARLDPVDALARE
>NZ_CP049046.1|WP_006809408.1|2132412_2132634_+|cold-shock-like-protein-CspD
MEMGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQGPKGNHASLIVPVEAETVA
>NZ_CP049046.1|WP_017693711.1|2144242_2145961_+|ubiquinone-dependent-pyruvate-dehydrogenase
MKQTVAAYIAKTLEQAGVKRIWGVTGDSLNGLSDSLNKMKTIEWMPTRHEEVAAFAAGAEAQLTGELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYCELVSSPEQIPQVLAIAMRKAILNRGVSVVVLPGDVALKAAPETATTHWYSAPQPTITPAEEELKKLAQLLRYSSNIALMCGSGCAGAHKELVEFAGKLKAPVVHALRGKEHVEYDNPYDVGMTGLIGFSSGFHTMMNADTLILLGTQFPYRAFYPTDAKIIQIDINPGSIGAHSKVDMALIGDIKSTLAALLPLLEEKTDRKFLDKALSDYRDARKGLDDLAKPSEKAIHPQYLAQQISHFADDDAIFTCDVGTPTVWAARYLKMNGKRRLLGSFNHGSMANAMPQALGAKATAPERQVVAMCGDGGFSMLMGDFLSVAQMKLPLKIVVFNNSVLGFVAMEMKAGGYLTDGTELHDTNFARIAEACGITGIRVEKASEVDDALQRAFAIDGPVLVDVVVAKEELAIPPQIKLEQAKGFSLYMLRAIISGRGDEVIELAKTNWLR
>NZ_CP049046.1|WP_023296208.1|2145999_2147001_+|low-specificity-L-threonine-aldolase
MIDLRSDTVTRPGRAMLEEMMAAPVGDDVYGDDPTVNELQRYAAELSGKEAALFLPTGTQANLVALLSHCERGEEYIVGQGAHNYLYEAGGAAVLGSIQPQPIDAAPDGTLPLDKVAAKIKADDIHFARTKLLSLENTHNGKVLPREYLKAAWDFTRERKLGLHVDGARIFNAVVEYGCELKAITQYCDSFTICLSKGLGTPVGSLLVGSADYIRRANRWRKMTGGGMRQAGILAAAGLYALKNNVSRLKDDHDNAAWMAAQLREIGADVMRHDTNMLFVRVGDEHAAALGDFMKARGVLINASPVVRLVMHLDVNREQLTEVVEHWQAFLQR
>NZ_CP049046.1|WP_023303382.1|2147011_2148448_+|SDR-family-oxidoreductase
MPQRILVLGASGYIGQHLTTALSQQGHQVLAAARNTERLQKLHLPGVTCHNVDLSWPKALPALLEGVDTLYYLVHSMGEGGDFIAHERQVAMNVRDALLQTPVKQVIFLSSLQAPEHEQSDHLRARQLTAETLRSARIPVTELRAGIIVGAGSAAFEVMRDMVYNLPVLTPPRWVRSRTTPIALENLLHYLVALLDHPAEQHRVLEAAGPEVLSYQAQFEHFMRVSGRHRWLIPIPFPTRWISVWFLNVITSVPPTTAKALIQGLKHDLLADDLALRALIPQELIRFDDAVRNTLKEEEKLVNSSDWGYDAQAFARWRPEYGYYPKQAGCTVKTTASLAALWEVVNQIGGKERYFFGNILWQTRGALDLLVGHRLAKGRPAHPWLKVGDTVDSWKVIIVEPEKQLALLFGMKAPGLGRLCFTLKDNGDHRELDVRAWWHPHGMPGLFYWLLMIPAHLFIFRGMAKRIAQLAEEKRENN
>NZ_CP049046.1|WP_017384852.1|2148540_2149554_+|NAD(P)-dependent-oxidoreductase
MKVLVTGATSGLGRNAVEFLRNKGISVRATGRNEAMGKLLQKMGAEFVHADLTELVSSQAKVMLAGIDTLWHCSSFTSPWGTQEAFDLANVRATRRLGEWAVAWGVRNFIHISSPSLYFDYHHHRDIQEDFRPARFACEFARSKAAGEEVIDLLAQSNPHTRFTVLRPQSLFGPHDKVFIPRLAQMMHHYGSVLLPRGGDALVDMTYYENAVHAMWLASQPECDKLVSGRAYNITNGEPCTLRSIVQRLIDELKIDCRIRSVPYPMLDMIARSMERFGSKSAKEPALTHYGVSKLNFDFTLDISRAENELGYKPIVSLDEGIVRTAAWLRDHGKLHR
>NZ_CP049046.1|WP_017693713.1|2149700_2151512_-|PKD-domain-containing-protein
MNKRTLLSVLIAGACVAPLMAQAANLKETSSEPYTIKASDLAKKEKELTDFPLMASVKETIQTLDNAQVELIEPGRAANPDNVKRVEGIVKASDWEYLFPLRAQAYTYSNFLKAVGKFPALCKTYNDGRDSDAICRKELATMFAHFAQETGGHESWRPEAEWRQALVHVREMGWSEGQKGGYNGECNPDVWQGQTWPCGKDKDGDFLSYFGRGAKQLSYNYNYGPFSEAMYGDVRTLLDKPELVADTWLNLASAIFFFAYPQPPKPSMLQVIDGTWQPNDHDKANGLVPGFGVTTQIINGGVECGGPTEIAQSQNRIKYYKEFANYLKVPVPANEVLGCANMKQFDEGGAGALKIYWEQDWGWSADTPDGKTYSCQLVGYQTPFSAFKDGDYSKCVQHFFNVKIVNDEGSSETPDETPVTPTPTPSDDETPAPTPTPDETPVVVNHAPVAQIAGPIGAVEAGAQVSLSAEGSTDPDGNTLTYTWRSQDGQTVTGQDKAVVTFTAPESATAQQYEVSLTVSDGELSSTTSYLLNVKAKAATPSGEDTSYPAWSANSKYNAGDIVNNHGKLFQCKPFPYSGWCNNAPTYYEPGAGLAWAEAWTAL
>NZ_CP049046.1|WP_017384854.1|2151646_2152087_-|type-III-secretion-system-invasion-protein-IagB
MKKLILLLLIISQSALANCWNKAAHYYHVDPYLLYAIANVESGMNPYAVGQNRDGTRDVGLMQINSSHFTALESRGIDEYRLITEPCTSIMVGASILAGMIRVYGYNWEAVGAYNAGLKKENYPQRMKYAHKVWAKYQQLKLAARY
>NZ_CP049046.1|WP_023303381.1|2152189_2154892_-|PKD-domain-containing-protein
MKFMKPKYLALFIAAATSSAFAAAPGAPTIGYGNDKFALVEVDQAAQDYNNLVKVHNDGVDVKVEWNVWSGDAPTSAKVLLDGQTVWTGAAGATGSATFKVKKGGRYQEQVEVCNASGCAKSASKLIIVADTDGSHLLPLNTSLKENNKAFAKHTDKVVAAYFPEWGVYDRNFPVDKIPAANLNHILYGFIPICGGDGINDGLKTIEGGNSFRVLQNDCKGRPDYTVAIHDPWAALQKPQAGVSGWDDPYKGNFGQLMALKKAHPDLKVLPSIGGWTLSDPFFHMGDPAIRARFVSSVKEFLQTWKFFDGVDIDWEFPGGGGVSENLGNPQQDKATYTALMHDLRTMLNELSAQTGRTYELTSAIGAGRDKIEDVDYTAAQQYLDHIFLMSYDFYGGWSNTVLGHQAALRAPAWRPDTDYTTENGVNALLSQGVQPGKIVVGAGMYGRGWTGVHGYTGNNPFTGTATGMVKGTWEPGVVDYRQIVNEYKGKPGWEYGYDADAEAPYVFNKTTGDLITYEDARSTTAKGKYVLANKLGGLFAWSIDSDTGDILNAMNESLLGGDATPVDPEVTNHAPIASSADQNVSGPVTVTLDGSASSDPDGDAITYKWTQVSGPSVTITNSTKAKATFNVAAATSDQTMVFRLTVTDAKGLSNAIDIQVVNKAPKANQAPVLNPMEAITLESGETYALHAQAADPDGDALTYAWSVPADMHATGSDSANVNITAPEVSSTSTYTLSVVVSDGKTSVQSNVQVTVNPKAAPAPVPDDEDTNPADDVTPPADDVTPPSDKGSCDAPVDANASKYAAWESSKIYNGGDTVSFDHLVWKAKYWTQGNQPGFGVDAWELVSNVKMNWRSDLVYNGGDTTTYEGNVYRAKWWTRGDNPANSDVWVKEGASTDCK
>NZ_CP049046.1|WP_023303380.1|2155146_2155944_-|prepilin-peptidase
MNTFSLMRDAFPVGFPIMSAILGGIVGSFLGVVAERVPGMVMDEEGSGNLLFPASNCPVCQHALAAWENIPLLSWLLLRGRCHQCGSAIPLRLFLVELISALFFGITAWCMPDVQALFSLWLLAAFLLPLAMIDWQHQLLPDCLTQPLLWAGLVLHAFDHTLPLRDALFGAVAGYLSLWLLYWAFRLITGREGLGYGDFKLLAALGAWCGWQVLPSIELAAALSGIVGYFAVNNLNKNNLTISFGPYLAFAGIVVFMSQQFAFTF
>NZ_CP049046.1|WP_017384857.1|2155940_2156426_-|type-II-secretion-system-protein-M
MKERIAQLKSRYQNYSTREKIILKICAVAIVGAVVYYTGVIPLDNMIQNSKSTLKRQKETLNWMRSEIDKNHLQVQIVKTNNPRTVVENSAHEINLSLTDMRQEGQTLSFVLNRVNVYELRSWLREINQTSGVRLQKINLTPVDHLSDVKAQVQLTWSKNA
>NZ_CP049046.1|WP_032103415.1|2156422_2157556_-|general-secretion-pathway-protein-GspL
MKQVLFVRPDSREGGKIMWCESGSERVEVVDSLEMLAEHPLATRVCLLLPASDMIFRHFTLPKKVASQAMAFSWMAEETLIGDVDNLHWTVLHKKGADVDAVAIDADRLRAALTRCQEAGLNVIQALPDAWLLPVTTGGSTLVAQDDSYWLRLSPHVAGEMEATLLPLLMQKAGVGEVWCYGDAPAKVHVDVQHAWQHPLALIQPQWQTCRVNLLHGEFSLKAGNGRAAKSMKAAMVAAGVLSVALLLGPRIAMAWMLVQQENRVQEEIVQVYQHHFPSMRQQTNIKYHFGQSLKKQSKGFFLQLDELENARQSVPAMEIELLEYDAQQNTLTLSVSAQNQPALQAFVNQTSENFDFTLQPVSTTEPYTAMIAGKHK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP049046_3	3.1\|2143904\|31\|NZ_CP049046\|CRISPRCasFinder	2143904-2143934	31	JF974302	Vibrio phage VBpm10, * SEQUENCING IN PROGRESS *, 8 unordered pieces	21037-21067	6	0.806
NZ_CP049046_3	3.1\|2143904\|31\|NZ_CP049046\|CRISPRCasFinder	2143904-2143934	31	MG592513	Vibrio phage 1.142.O._10N.261.49.E11, partial genome	26631-26661	7	0.774
NZ_CP049046_3	3.1\|2143904\|31\|NZ_CP049046\|CRISPRCasFinder	2143904-2143934	31	MG592412	Vibrio phage 1.028.O._10N.286.45.B6, partial genome	26631-26661	7	0.774
NZ_CP049046_3	3.1\|2143904\|31\|NZ_CP049046\|CRISPRCasFinder	2143904-2143934	31	MG592527	Vibrio phage 1.159.O._10N.261.46.F12, partial genome	26631-26661	7	0.774
NZ_CP049046_3	3.1\|2143904\|31\|NZ_CP049046\|CRISPRCasFinder	2143904-2143934	31	MG592588	Vibrio phage 1.217.O._10N.261.45.A1, partial genome	26631-26661	7	0.774
NZ_CP049046_3	3.1\|2143904\|31\|NZ_CP049046\|CRISPRCasFinder	2143904-2143934	31	MG592589	Vibrio phage 1.219.O._10N.261.45.E2, partial genome	26631-26661	7	0.774
NZ_CP049046_3	3.1\|2143904\|31\|NZ_CP049046\|CRISPRCasFinder	2143904-2143934	31	MG592524	Vibrio phage 1.156.O._10N.261.45.A6, partial genome	26631-26661	7	0.774
NZ_CP049046_3	3.1\|2143904\|31\|NZ_CP049046\|CRISPRCasFinder	2143904-2143934	31	MG592669	Vibrio phage 2.159.A._10N.261.46.F12, partial genome	26631-26661	7	0.774
NZ_CP049046_3	3.1\|2143904\|31\|NZ_CP049046\|CRISPRCasFinder	2143904-2143934	31	MG592670	Vibrio phage 2.159.B._10N.261.46.F12, partial genome	26631-26661	7	0.774
NZ_CP049046_3	3.1\|2143904\|31\|NZ_CP049046\|CRISPRCasFinder	2143904-2143934	31	MG592507	Vibrio phage 1.136.O._10N.261.45.E11, partial genome	26631-26661	7	0.774
NZ_CP049046_3	3.1\|2143904\|31\|NZ_CP049046\|CRISPRCasFinder	2143904-2143934	31	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	1534665-1534695	7	0.774
NZ_CP049046_3	3.1\|2143904\|31\|NZ_CP049046\|CRISPRCasFinder	2143904-2143934	31	NC_015184	Agrobacterium sp. H13-3 plasmid pAspH13-3a, complete sequence	62534-62564	8	0.742
NZ_CP049046_3	3.1\|2143904\|31\|NZ_CP049046\|CRISPRCasFinder	2143904-2143934	31	NZ_CP035511	Haematobacter massiliensis strain OT1 plasmid pOT1-1, complete sequence	283146-283176	8	0.742
NZ_CP049046_3	3.1\|2143904\|31\|NZ_CP049046\|CRISPRCasFinder	2143904-2143934	31	NZ_CP054620	Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence	22328-22358	9	0.71
NZ_CP049046_3	3.1\|2143904\|31\|NZ_CP049046\|CRISPRCasFinder	2143904-2143934	31	NC_013859	Azospirillum sp. B510 plasmid pAB510e, complete sequence	475099-475129	9	0.71
NZ_CP049046_3	3.1\|2143904\|31\|NZ_CP049046\|CRISPRCasFinder	2143904-2143934	31	NZ_CP054621	Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence	714186-714216	10	0.677
NZ_CP049046_2	2.1\|1514471\|58\|NZ_CP049046\|CRISPRCasFinder	1514471-1514528	58	NZ_LN868946	Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 4, complete sequence	15954-16011	12	0.793

1. spacer 3.1|2143904|31|NZ_CP049046|CRISPRCasFinder matches to JF974302 (Vibrio phage VBpm10, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces) position: , mismatch: 6, identity: 0.806

aaaacacgctggcgcgtgtcggtgtcgccgt	CRISPR spacer
acaatgctctggcgcgtttcagtgtcgccgt	Protospacer
* **..* ********* **.**********

2. spacer 3.1|2143904|31|NZ_CP049046|CRISPRCasFinder matches to MG592513 (Vibrio phage 1.142.O._10N.261.49.E11, partial genome) position: , mismatch: 7, identity: 0.774

aaaacacgctggcgcgtgtcggtgtcgccgt	CRISPR spacer
actatgctctggcgcgtttcagtgtcgccgt	Protospacer
*  *..* ********* **.**********

3. spacer 3.1|2143904|31|NZ_CP049046|CRISPRCasFinder matches to MG592412 (Vibrio phage 1.028.O._10N.286.45.B6, partial genome) position: , mismatch: 7, identity: 0.774

aaaacacgctggcgcgtgtcggtgtcgccgt	CRISPR spacer
actatgctctggcgcgtttcagtgtcgccgt	Protospacer
*  *..* ********* **.**********

4. spacer 3.1|2143904|31|NZ_CP049046|CRISPRCasFinder matches to MG592527 (Vibrio phage 1.159.O._10N.261.46.F12, partial genome) position: , mismatch: 7, identity: 0.774

aaaacacgctggcgcgtgtcggtgtcgccgt	CRISPR spacer
actatgctctggcgcgtttcagtgtcgccgt	Protospacer
*  *..* ********* **.**********

5. spacer 3.1|2143904|31|NZ_CP049046|CRISPRCasFinder matches to MG592588 (Vibrio phage 1.217.O._10N.261.45.A1, partial genome) position: , mismatch: 7, identity: 0.774

aaaacacgctggcgcgtgtcggtgtcgccgt	CRISPR spacer
actatgctctggcgcgtttcagtgtcgccgt	Protospacer
*  *..* ********* **.**********

6. spacer 3.1|2143904|31|NZ_CP049046|CRISPRCasFinder matches to MG592589 (Vibrio phage 1.219.O._10N.261.45.E2, partial genome) position: , mismatch: 7, identity: 0.774

aaaacacgctggcgcgtgtcggtgtcgccgt	CRISPR spacer
actatgctctggcgcgtttcagtgtcgccgt	Protospacer
*  *..* ********* **.**********

7. spacer 3.1|2143904|31|NZ_CP049046|CRISPRCasFinder matches to MG592524 (Vibrio phage 1.156.O._10N.261.45.A6, partial genome) position: , mismatch: 7, identity: 0.774

aaaacacgctggcgcgtgtcggtgtcgccgt	CRISPR spacer
actatgctctggcgcgtttcagtgtcgccgt	Protospacer
*  *..* ********* **.**********

8. spacer 3.1|2143904|31|NZ_CP049046|CRISPRCasFinder matches to MG592669 (Vibrio phage 2.159.A._10N.261.46.F12, partial genome) position: , mismatch: 7, identity: 0.774

aaaacacgctggcgcgtgtcggtgtcgccgt	CRISPR spacer
actatgctctggcgcgtttcagtgtcgccgt	Protospacer
*  *..* ********* **.**********

9. spacer 3.1|2143904|31|NZ_CP049046|CRISPRCasFinder matches to MG592670 (Vibrio phage 2.159.B._10N.261.46.F12, partial genome) position: , mismatch: 7, identity: 0.774

aaaacacgctggcgcgtgtcggtgtcgccgt	CRISPR spacer
actatgctctggcgcgtttcagtgtcgccgt	Protospacer
*  *..* ********* **.**********

10. spacer 3.1|2143904|31|NZ_CP049046|CRISPRCasFinder matches to MG592507 (Vibrio phage 1.136.O._10N.261.45.E11, partial genome) position: , mismatch: 7, identity: 0.774

aaaacacgctggcgcgtgtcggtgtcgccgt	CRISPR spacer
actatgctctggcgcgtttcagtgtcgccgt	Protospacer
*  *..* ********* **.**********

11. spacer 3.1|2143904|31|NZ_CP049046|CRISPRCasFinder matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.774

aaaacacg----ctggcgcgtgtcggtgtcgccgt	CRISPR spacer
----cccggcacctggcgcgtgacggtctcgccgt	Protospacer
    * **    ********** **** *******

12. spacer 3.1|2143904|31|NZ_CP049046|CRISPRCasFinder matches to NC_015184 (Agrobacterium sp. H13-3 plasmid pAspH13-3a, complete sequence) position: , mismatch: 8, identity: 0.742

aaaacacgctggcgcgtgtcggtgtcgccgt	CRISPR spacer
tgagatcgcgggcgagtgtcggtgtcgccgc	Protospacer
 .*.  *** **** ***************.

13. spacer 3.1|2143904|31|NZ_CP049046|CRISPRCasFinder matches to NZ_CP035511 (Haematobacter massiliensis strain OT1 plasmid pOT1-1, complete sequence) position: , mismatch: 8, identity: 0.742

aaaacacgctggcgcgtgtcggtgtcgccgt	CRISPR spacer
tagaactgctggcgcgtgtcggcatcgccga	Protospacer
 *.*  .***************..******

14. spacer 3.1|2143904|31|NZ_CP049046|CRISPRCasFinder matches to NZ_CP054620 (Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.71

aaaacacgctggcgcgtgtcggtgtcgccgt	CRISPR spacer
atcctgggctgccgcgtgtcgatgtcgccgg	Protospacer
*   .. **** *********.********

15. spacer 3.1|2143904|31|NZ_CP049046|CRISPRCasFinder matches to NC_013859 (Azospirillum sp. B510 plasmid pAB510e, complete sequence) position: , mismatch: 9, identity: 0.71

aaaacacgctggcgcgtgtcggtgtcgccgt	CRISPR spacer
atcctgggctgccgggtgtcggtgtcgccgg	Protospacer
*   .. **** ** ***************

16. spacer 3.1|2143904|31|NZ_CP049046|CRISPRCasFinder matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 10, identity: 0.677

aaaacacgctggcgcgtgtcggtgtcgccgt	CRISPR spacer
ctgcggcgctggcgcgggtcggagtcgcccc	Protospacer
  .  .********** ***** ****** .

17. spacer 2.1|1514471|58|NZ_CP049046|CRISPRCasFinder matches to NZ_LN868946 (Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 4, complete sequence) position: , mismatch: 12, identity: 0.793

gaaacgataaaaagccgggtggcggctacgccttacccggcctacatgttctacatat	CRISPR spacer
tcgcaaataaaaagccgggtggcggctacgccttacccggcctacatcgtctgcttga	Protospacer
  .  .*****************************************  ***.* *.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

186260 : 244830

Enterobacteria_phage(27.78%)

holin,terminase,tRNA,tail,integrase

attL 192226:192242|attR 201891:201907

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_017383555.1\|186260_187346_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_003860729.1\|187385_188075_-	uracil-DNA glycosylase	A0A076JX67	Equid_alphaherpesvirus	7.9e-55	48.8
WP_003860727.1\|188390_188774_+	autonomous glycyl radical cofactor GrcA	A0A193GZ98	Escherichia_phage	2.1e-33	71.8
WP_017383554.1\|188826_190155_-	ATP-dependent RNA helicase SrmB	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	4.7e-48	33.5
WP_015572137.1\|190287_191025_+\|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	NA	NA	NA	NA
WP_017692868.1\|191009_192629_-	L-aspartate oxidase	NA	NA	NA	NA
192226:192242	attL	NA	NA	NA	NA
WP_006176728.1\|193054_193630_+	RNA polymerase sigma factor RpoE	A0A0F6TH34	Sinorhizobium_phage	8.2e-05	28.1
WP_015572138.1\|193661_194312_+	anti-sigma-E factor RseA	NA	NA	NA	NA
WP_045332167.1\|194311_195265_+	sigma-E factor regulatory protein RseB	NA	NA	NA	NA
WP_006811609.1\|195261_195738_+	SoxR-reducing system protein RseC	NA	NA	NA	NA
WP_006811608.1\|196169_197399_+\|integrase	site-specific integrase	H6WRW7	Salmonella_phage	9.9e-242	98.8
WP_022651668.1\|197376_197661_-	excisionase Xis	H6WRW8	Salmonella_phage	4.3e-39	83.0
WP_045332174.1\|197707_197950_-	DUF4060 family protein	K7PHF4	Enterobacteria_phage	3.9e-33	92.3
WP_045332217.1\|197936_198620_-	hypothetical protein	H2BDG4	Pseudomonas_virus	1.0e-46	46.7
WP_045332219.1\|198663_199773_-	recombinase RecT	H6WRX0	Salmonella_phage	5.5e-167	79.7
WP_058677481.1\|199784_203060_-	exodeoxyribonuclease	K7P6V4	Enterobacteria_phage	0.0e+00	68.3
201891:201907	attR	NA	NA	NA	NA
WP_045332221.1\|203199_203361_-	hypothetical protein	H6WRX3	Salmonella_phage	1.6e-11	62.0
WP_032674134.1\|203371_203578_-	phage encoded cell division inhibitor protein	K7PM31	Enterobacteria_phage	3.1e-31	94.1
WP_045332177.1\|203774_204176_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_006811600.1\|204287_204518_+	hypothetical protein	H6WRX5	Salmonella_phage	3.6e-12	42.1
WP_045332180.1\|204520_205063_+	hypothetical protein	M9NZI6	Enterobacteria_phage	4.8e-47	55.0
WP_164692023.1\|205498_206491_+	replication protein	A5VW95	Enterobacteria_phage	1.4e-49	75.0
WP_039270087.1\|206474_207167_+	phage replication protein P	G8C7U6	Escherichia_phage	3.5e-79	60.0
WP_045332182.1\|207178_207865_+	hypothetical protein	NA	NA	NA	NA
WP_012132763.1\|207868_208129_+	DUF977 family protein	H6WRX9	Salmonella_phage	8.1e-29	73.5
WP_045332187.1\|208125_208614_+	hypothetical protein	NA	NA	NA	NA
WP_040117511.1\|208615_208825_+	hypothetical protein	NA	NA	NA	NA
WP_045332190.1\|208828_209233_+	hypothetical protein	M9NZE4	Enterobacteria_phage	8.0e-15	95.7
WP_045332193.1\|209235_209982_+	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	9.7e-67	79.1
WP_058677480.1\|209978_211862_+	DNA methyltransferase	H9C171	Pectobacterium_phage	2.3e-197	51.9
WP_045332196.1\|211992_212409_+	hypothetical protein	NA	NA	NA	NA
WP_045332197.1\|212565_212799_+	DinI family protein	A0A0M4REN2	Salmonella_phage	4.0e-27	80.5
WP_017693509.1\|213203_213803_+	DUF1367 family protein	A0A0M4QX23	Salmonella_phage	2.7e-99	87.8
WP_017692885.1\|213808_214009_+	hypothetical protein	K7PJT9	Enterobacteria_phage	7.6e-19	59.1
WP_045332200.1\|213999_214293_+	hypothetical protein	K7P7Q1	Enterobacteria_phage	1.4e-45	97.8
WP_045332203.1\|214289_214646_+	RusA family crossover junction endodeoxyribonuclease	K7P6W0	Enterobacteria_phage	1.8e-63	95.8
WP_045332207.1\|214642_214783_+	YlcG family protein	NA	NA	NA	NA
WP_058677479.1\|214779_215589_+	antitermination protein	M9NZB0	Enterobacteria_phage	5.3e-111	70.5
WP_045332212.1\|216175_217138_+	hypothetical protein	A9YX09	Burkholderia_phage	1.3e-66	44.2
WP_015570936.1\|217315_217702_+	hypothetical protein	A0A192Y8P2	Salmonella_phage	3.2e-45	78.1
WP_045332224.1\|217688_217970_+\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	1.3e-19	46.2
WP_058670585.1\|217969_218599_+	glycoside hydrolase family 19 protein	G8C7W0	Escherichia_phage	4.6e-102	88.0
WP_045331536.1\|218606_218876_+	hypothetical protein	G8C7W1	Escherichia_phage	4.5e-30	82.0
WP_003859853.1\|219971_220202_+	hypothetical protein	NA	NA	NA	NA
WP_015570934.1\|220421_221420_+\|terminase	terminase small subunit	I6X6R5	Burkholderia_virus	1.1e-38	44.0
WP_164691776.1\|221397_222705_+\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	1.5e-142	57.0
WP_045331449.1\|222706_224095_+	DUF4055 domain-containing protein	A0A1B0VMH0	Pseudomonas_phage	3.8e-125	50.5
WP_045331452.1\|224096_225188_+	phage Mu F like family protein	I6PD76	Cronobacter_phage	6.7e-117	57.9
WP_045331455.1\|225274_226045_+	hypothetical protein	A0A1B0VMG1	Pseudomonas_phage	6.3e-69	59.6
WP_045331458.1\|226057_227011_+	Ig domain-containing protein	A0A1B0VMF8	Pseudomonas_phage	3.1e-134	75.3
WP_162184507.1\|226992_227292_+	hypothetical protein	NA	NA	NA	NA
WP_045331464.1\|227328_227811_+	hypothetical protein	A0A2I7RQ74	Vibrio_phage	1.5e-07	31.3
WP_045331466.1\|227812_228163_+	hypothetical protein	I6PD77	Cronobacter_phage	7.3e-33	57.8
WP_045331468.1\|228164_228749_+	hypothetical protein	G8C7Q1	Escherichia_phage	1.1e-49	55.3
WP_045331470.1\|228745_229156_+	hypothetical protein	I6PDJ8	Cronobacter_phage	3.3e-32	50.0
WP_017693490.1\|229213_229885_+\|tail	tail protein	I6PBN6	Cronobacter_phage	3.3e-50	48.4
WP_045331472.1\|229946_230258_+	hypothetical protein	I6PDG2	Cronobacter_phage	9.1e-35	67.0
WP_080337738.1\|230254_230569_+	hypothetical protein	I6PD79	Cronobacter_phage	3.3e-16	63.3
WP_045331475.1\|230565_233478_+\|tail	phage tail tape measure protein	I6PCW3	Cronobacter_phage	3.7e-154	39.0
WP_020690998.1\|233552_233906_+	hypothetical protein	A0A1V0E5P9	Salmonella_phage	6.0e-59	98.3
WP_045331477.1\|233962_234310_+\|tail	phage tail protein	I6PBN7	Cronobacter_phage	1.1e-36	62.6
WP_045331478.1\|234306_235062_+\|tail	phage minor tail protein L	G8C7J7	Escherichia_phage	2.7e-117	78.4
WP_045331481.1\|235063_235783_+	peptidase P60	K7PLS6	Enterobacteria_phage	2.3e-142	97.0
WP_045142476.1\|236121_236694_+	SocA family protein	NA	NA	NA	NA
WP_072044163.1\|236690_237143_+	hypothetical protein	NA	NA	NA	NA
WP_164691777.1\|237222_237852_+\|tail	tail assembly protein	K7PGY0	Enterobacteria_phage	1.1e-55	57.1
WP_063162030.1\|237904_241486_+\|tail	phage tail protein	Q9MCR7	Enterobacteria_phage	0.0e+00	83.6
WP_040117545.1\|241487_242453_+	hypothetical protein	G1CSU0	Cronobacter_virus	2.2e-58	39.9
WP_045331488.1\|242512_243991_+	hypothetical protein	K7PHF0	Enterobacteria_phage	4.5e-132	55.5
WP_045331490.1\|243999_244830_+\|tail	tail fiber domain-containing protein	A0A192Y7T9	Enterobacteria_phage	5.8e-36	31.4

DBSCAN-SWA_2

715072 : 725885

Hokovirus(12.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032619353.1\|715072_716491_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	8.9e-61	32.1
WP_032634835.1\|716600_717971_+	phosphomannomutase CpsG	A0A127AWJ1	Bacillus_phage	2.0e-33	27.7
WP_032619355.1\|718136_719543_+	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	4.7e-38	28.5
WP_032619357.1\|719632_720718_+	dTDP-glucose 4,6-dehydratase	A0A291LAD7	Escherichia_phage	8.2e-99	52.6
WP_017693099.1\|720718_721600_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	9.0e-104	62.7
WP_032619358.1\|721838_723005_+	UDP-glucose 6-dehydrogenase	A0A1J0FA55	Only_Syngen_Nebraska_virus	7.0e-112	54.0
WP_032619359.1\|723054_724059_-	NAD-dependent epimerase	A0A2K9L0I7	Tupanvirus	1.9e-33	29.0
WP_032619360.1\|724253_725234_+	LPS O-antigen chain length determinant protein WzzB	NA	NA	NA	NA
WP_017693103.1\|725273_725885_-	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	A0A2H4UVM0	Bodo_saltans_virus	1.6e-14	29.3

DBSCAN-SWA_3

809291 : 856768

Cronobacter_phage(27.12%)

head,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_164691804.1\|809291_810587_-	DUF3596 domain-containing protein	Q20GI2	Phage_258-320	1.6e-178	68.2
WP_014070846.1\|810632_810878_-	excisionase family protein	Q8W657	Enterobacteria_phage	9.4e-27	67.9
WP_059444766.1\|811253_811580_-	DUF550 domain-containing protein	K7PGV7	Enterobacterial_phage	4.6e-45	83.0
WP_085004673.1\|811589_811829_-	DUF4222 domain-containing protein	M1FPC8	Enterobacteria_phage	2.8e-28	73.1
WP_164691805.1\|811806_812307_-	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	1.7e-70	79.1
WP_164691806.1\|812303_812456_-	DUF1317 family protein	T1SAR0	Salmonella_phage	1.6e-05	44.2
WP_164691807.1\|812452_812881_-	regulator	M9NYX4	Enterobacteria_phage	2.9e-71	94.4
WP_045333352.1\|812877_813558_-	YqaJ viral recombinase family protein	M9NZE1	Enterobacteria_phage	7.6e-127	94.7
WP_058663635.1\|813554_814400_-	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	4.8e-70	61.2
WP_164691808.1\|814418_814703_-	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	2.2e-48	95.7
WP_023622534.1\|815156_815360_-	phage encoded cell division inhibitor protein	K7P6H3	Enterobacteria_phage	4.4e-22	76.6
WP_023294196.1\|815356_815515_-	hypothetical protein	G8C7T3	Escherichia_phage	5.8e-22	96.2
WP_032667910.1\|815511_815739_-	hypothetical protein	I6NVM7	Burkholderia_virus	3.2e-05	42.5
WP_164691809.1\|815886_816525_-	hypothetical protein	NA	NA	NA	NA
WP_023313997.1\|817046_817244_+	hypothetical protein	G8C7T7	Escherichia_phage	9.2e-25	93.8
WP_045325426.1\|817381_818143_-	KilA-N domain-containing protein	A0A1L2BWW1	Bacteriophage	1.1e-09	46.3
WP_164691810.1\|818236_818878_-	helix-turn-helix domain-containing protein	K7PH71	Enterobacterial_phage	1.2e-92	76.3
WP_006809779.1\|818981_819197_+	helix-turn-helix transcriptional regulator	K7PMD5	Enterobacterial_phage	2.8e-27	81.7
WP_149912276.1\|819227_819770_+	regulator	M9NZI6	Enterobacteria_phage	1.6e-87	91.7
WP_015571544.1\|819859_820006_+	hypothetical protein	NA	NA	NA	NA
WP_023314000.1\|819998_820898_+	hypothetical protein	A0A0N7C1Z7	Escherichia_phage	1.4e-80	54.7
WP_164691811.1\|820887_822321_+	AAA family ATPase	Q716D2	Shigella_phage	9.2e-231	86.7
WP_164691812.1\|822320_822665_+	winged helix-turn-helix transcriptional regulator	G8C7U7	Escherichia_phage	1.6e-56	97.3
WP_047727199.1\|822661_822958_+	DUF4406 domain-containing protein	A0A222YYT7	Escherichia_phage	7.1e-29	63.0
WP_047727197.1\|822954_823428_+	ead/Ea22-like family protein	K7P6J7	Enterobacteria_phage	4.2e-31	49.2
WP_164691813.1\|823424_824183_+	hypothetical protein	A0A248SKW5	Klebsiella_phage	3.1e-20	43.0
WP_049110418.1\|824557_824857_+	hypothetical protein	NA	NA	NA	NA
WP_049130133.1\|824902_825403_+	hypothetical protein	NA	NA	NA	NA
WP_164691814.1\|825444_825693_+	DNA polymerase III subunit theta	G8C7V1	Escherichia_phage	2.3e-33	90.0
WP_109885434.1\|825689_825950_+	hypothetical protein	NA	NA	NA	NA
WP_032634774.1\|826127_826583_+	hypothetical protein	I6PD71	Cronobacter_phage	7.0e-60	66.2
WP_059444869.1\|826582_826753_+	NinE family protein	K7P7K0	Enterobacteria_phage	1.7e-19	87.5
WP_164691815.1\|826745_827387_+	NinG family protein	M9NYX8	Enterobacteria_phage	1.8e-106	93.0
WP_164691816.1\|827383_827767_+	hypothetical protein	A0A2R2Z307	Escherichia_phage	3.2e-21	45.5
WP_164691817.1\|827763_827880_+	hypothetical protein	NA	NA	NA	NA
WP_164691818.1\|827876_828566_+	antiterminator	I6PDF8	Cronobacter_phage	9.3e-56	51.8
WP_001514183.1\|829001_829403_+	hypothetical protein	NA	NA	NA	NA
WP_001514184.1\|829399_829675_+\|holin	phage holin family protein	S4TNV9	Salmonella_phage	5.8e-09	41.0
WP_022651099.1\|829677_830220_+	glycoside hydrolase family 108 protein	A0A0U2S643	Escherichia_phage	2.7e-74	70.4
WP_164691819.1\|830216_830489_+	hypothetical protein	G8C7W1	Escherichia_phage	2.9e-13	52.3
WP_164692025.1\|830639_830876_+	hypothetical protein	A0A291LBC4	Klebsiella_phage	4.9e-25	68.8
WP_032619431.1\|831177_831396_+	hypothetical protein	NA	NA	NA	NA
WP_032619433.1\|831392_831599_+	hypothetical protein	NA	NA	NA	NA
WP_045363909.1\|831602_832253_+	hypothetical protein	G8C7P2	Escherichia_phage	1.2e-113	99.1
WP_063615165.1\|832249_833797_+	hypothetical protein	G8C7P3	Escherichia_phage	5.9e-292	89.8
WP_164691820.1\|833808_835266_+	DUF1073 domain-containing protein	F1C5D7	Cronobacter_phage	9.4e-199	74.6
WP_164692026.1\|835222_836203_+\|head	phage head morphogenesis protein	F1C5D8	Cronobacter_phage	4.2e-110	66.1
WP_044704353.1\|836234_836429_+	hypothetical protein	NA	NA	NA	NA
WP_164691821.1\|836521_837907_+	DUF2213 domain-containing protein	F1C5D9	Cronobacter_phage	2.0e-150	58.7
WP_164691822.1\|837910_838342_+	hypothetical protein	F1C5E0	Cronobacter_phage	1.5e-51	72.0
WP_063938477.1\|838353_839439_+	hypothetical protein	F1C5E1	Cronobacter_phage	1.2e-142	69.0
WP_063938479.1\|839450_839828_+	hypothetical protein	NA	NA	NA	NA
WP_164691823.1\|839830_840211_+	hypothetical protein	F1C5E2	Cronobacter_phage	3.1e-29	55.3
WP_164691824.1\|840210_840384_+	50S ribosomal protein L13	Q5G8X7	Enterobacteria_phage	1.6e-12	52.6
WP_023314029.1\|840383_840740_+	hypothetical protein	G0ZNE2	Cronobacter_phage	4.7e-27	55.6
WP_164691825.1\|840742_841207_+	HK97 gp10 family phage protein	A0A2P1MXA4	Escherichia_phage	4.5e-30	45.5
WP_164691826.1\|841203_841587_+	hypothetical protein	F1C5E4	Cronobacter_phage	1.8e-40	63.8
WP_164691827.1\|841651_842395_+	Ig domain-containing protein	F1C5E5	Cronobacter_phage	1.3e-71	84.9
WP_130066902.1\|842452_843124_+	hypothetical protein	G0ZNE7	Cronobacter_phage	3.4e-55	49.3
WP_164692027.1\|843907_846232_+	tape measure protein	A0A1B1W284	Salmonella_phage	9.5e-145	53.4
WP_032619450.1\|846231_846729_+	hypothetical protein	F1C5F0	Cronobacter_phage	1.8e-88	90.9
WP_032634732.1\|846728_847199_+	hypothetical protein	F1C5F1	Cronobacter_phage	8.0e-75	87.8
WP_032619452.1\|847212_847578_+	C40 family peptidase	F1C5F2	Cronobacter_phage	2.1e-62	89.9
WP_164691828.1\|847564_850042_+	MoaD/ThiS family protein	F1C5A7	Cronobacter_phage	0.0e+00	92.5
WP_164691829.1\|850099_852274_+	hypothetical protein	B1GS50	Salmonella_phage	9.2e-57	56.7
WP_126530052.1\|852299_853802_-	hypothetical protein	M1FPE6	Enterobacteria_phage	4.8e-89	38.6
WP_045332016.1\|853805_854723_-	glycosyltransferase family 2 protein	U5P087	Shigella_phage	9.2e-160	91.7
WP_045332015.1\|854719_855082_-	GtrA family protein	U5P0S6	Shigella_phage	2.0e-49	85.0
WP_052686387.1\|855194_855500_+	hypothetical protein	K7PGV5	Enterobacterial_phage	1.6e-15	43.6
WP_164691830.1\|855499_856768_+	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	5.8e-229	91.5

DBSCAN-SWA_4

874470 : 909767

Staphylococcus_phage(40.0%)

integrase,transposase

attL 866595:866610|attR 900903:900918

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
866595:866610	attL	NA	NA	NA	NA
WP_045418864.1\|874470_875688_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_032634564.1\|876105_876420_+	hypothetical protein	NA	NA	NA	NA
WP_164691832.1\|876445_876955_+	hypothetical protein	NA	NA	NA	NA
WP_089617388.1\|877048_877483_+	DUF2787 domain-containing protein	NA	NA	NA	NA
WP_164691833.1\|877778_878036_+	DeoR family transcriptional regulator	NA	NA	NA	NA
WP_164691834.1\|879050_879188_-	hypothetical protein	NA	NA	NA	NA
WP_164691835.1\|879493_881017_+	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	3.2e-88	39.1
WP_164691836.1\|881006_882290_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_164691837.1\|882286_882970_+	UPF0149 family protein	NA	NA	NA	NA
WP_164692028.1\|883022_886307_+	HsdR family type I site-specific deoxyribonuclease	A0A220A398	Liberibacter_phage	2.0e-63	27.4
WP_063945660.1\|886303_887059_+	M48 family metallopeptidase	NA	NA	NA	NA
WP_045896958.1\|888086_889016_+	DNA-processing protein DprA	NA	NA	NA	NA
WP_164691838.1\|889012_893689_+	RecQ family ATP-dependent DNA helicase	K7YHB4	Megavirus	2.5e-35	32.0
WP_032469931.1\|893685_894174_+	hypothetical protein	NA	NA	NA	NA
WP_097761820.1\|894360_894489_-\|transposase	transposase	NA	NA	NA	NA
WP_001254932.1\|894982_896134_-\|transposase	IS30-like element IS30 family transposase	W5R8L2	Staphylococcus_phage	2.0e-42	35.6
WP_000227969.1\|897576_898653_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_032187804.1\|898999_900454_+	DUF262 domain-containing protein	NA	NA	NA	NA
WP_164691839.1\|900446_902489_+	DUF262 domain-containing protein	NA	NA	NA	NA
900903:900918	attR	NA	NA	NA	NA
WP_164691840.1\|902675_908411_+	DUF4011 domain-containing protein	NA	NA	NA	NA
WP_164692029.1\|908631_909486_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	8.0e-81	56.2
WP_000537152.1\|909482_909767_-\|transposase	IS3 family transposase	NA	NA	NA	NA

DBSCAN-SWA_5

1590983 : 1598524

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003857421.1\|1590983_1591838_+	benzoate transporter	M1I711	Paramecium_bursaria_Chlorella_virus	8.1e-25	33.2
WP_003857424.1\|1591940_1592246_+	DUF1161 domain-containing protein	NA	NA	NA	NA
WP_164691873.1\|1592376_1594815_+	molybdopterin-dependent oxidoreductase	A0A077SK27	Escherichia_phage	2.2e-216	49.5
WP_023303657.1\|1594825_1595443_+	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	4.0e-74	58.6
WP_164691874.1\|1595444_1596299_+	dimethyl sulfoxide reductase anchor subunit	A0A077SK59	Escherichia_phage	6.4e-22	33.1
WP_017384547.1\|1596343_1596958_+	Tat proofreading chaperone DmsD	A0A077SLS7	Escherichia_phage	3.3e-28	34.7
WP_017384548.1\|1597067_1597379_+	YebG family protein	NA	NA	NA	NA
WP_017694081.1\|1597493_1597808_-	hypothetical protein	NA	NA	NA	NA
WP_015570622.1\|1597846_1598524_-	type A chloramphenicol O-acetyltransferase	G3CFL0	Escherichia_phage	2.1e-76	62.6

DBSCAN-SWA_6

1836760 : 1909014

Klebsiella_phage(26.19%)

head,terminase,capsid,portal,tRNA,tail,transposase,integrase

attL 1833148:1833163|attR 1900645:1900660

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1833148:1833163	attL	NA	NA	NA	NA
WP_015570783.1\|1836760_1837261_+\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
WP_015570785.1\|1837669_1839001_+	sugar (Glycoside-Pentoside-Hexuronide) transporter	NA	NA	NA	NA
WP_032619910.1\|1839016_1841053_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA
WP_003857881.1\|1841159_1841606_+	DUF441 domain-containing protein	NA	NA	NA	NA
WP_017384695.1\|1841589_1842381_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_017384696.1\|1842480_1843668_+	CynX/NimT family MFS transporter	NA	NA	NA	NA
WP_023296323.1\|1843699_1844407_-	CTP synthase	NA	NA	NA	NA
WP_015570789.1\|1844558_1844903_+	DUF488 domain-containing protein	NA	NA	NA	NA
WP_015570790.1\|1844903_1845209_-	hypothetical protein	NA	NA	NA	NA
WP_015570791.1\|1845289_1845544_-	DUF333 domain-containing protein	NA	NA	NA	NA
WP_045331148.1\|1845855_1846884_+	sensor domain-containing diguanylate cyclase	G3MA91	Bacillus_virus	8.5e-13	32.6
WP_015570793.1\|1846929_1847028_+	YoaK family small membrane protein	NA	NA	NA	NA
WP_015570794.1\|1847028_1847103_+	protein YoaJ	NA	NA	NA	NA
WP_003857896.1\|1847156_1847405_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_071524166.1\|1847774_1847867_+	stress response membrane protein YncL	NA	NA	NA	NA
WP_023296321.1\|1847991_1849491_+	cyclic diguanylate phosphodiesterase	NA	NA	NA	NA
WP_015570796.1\|1849495_1849741_-	YmjA family protein	NA	NA	NA	NA
WP_045351080.1\|1849816_1850008_-	hypothetical protein	Q77Z09	Phage_21	2.7e-21	92.6
WP_164691885.1\|1850152_1851451_-	DUF2254 domain-containing protein	NA	NA	NA	NA
WP_042863324.1\|1851516_1853514_-	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	2.6e-21	26.2
WP_058663376.1\|1853716_1854274_-	recombinase family protein	A0A1S6L009	Salmonella_phage	2.1e-74	76.5
WP_010429924.1\|1856202_1856436_-	hypothetical protein	E4WL42	Enterobacteria_phage	3.9e-30	76.6
WP_042863329.1\|1856543_1857215_-	hypothetical protein	A0A2P0WA07	Enterobacter_phage	9.3e-85	71.7
WP_042863330.1\|1857215_1857530_-	hypothetical protein	A0A2P0WA17	Enterobacter_phage	3.7e-36	71.6
WP_164691886.1\|1857571_1861114_-	DUF1983 domain-containing protein	Q9MCU0	Escherichia_phage	0.0e+00	60.9
WP_042863333.1\|1861178_1861781_-\|tail	tail assembly protein	I6PCW4	Cronobacter_phage	6.9e-47	52.6
WP_058663337.1\|1861761_1862478_-	peptidase P60	A0A1W6JP31	Morganella_phage	4.1e-62	47.4
WP_058663338.1\|1862480_1863230_-\|tail	phage minor tail protein L	K7PGX3	Enterobacteria_phage	3.2e-86	58.4
WP_164692034.1\|1863312_1863672_-\|tail	phage tail protein	A0A1W6JP11	Morganella_phage	4.3e-20	41.3
WP_058663339.1\|1863668_1866641_-\|tail	phage tail tape measure protein	A0A2H4J107	uncultured_Caudovirales_phage	3.3e-25	25.4
WP_042863338.1\|1866630_1866849_-	hypothetical protein	Q6UAW9	Klebsiella_phage	1.7e-08	42.3
WP_010433126.1\|1866869_1867214_-	hypothetical protein	NA	NA	NA	NA
WP_042863340.1\|1867272_1867746_-	hypothetical protein	NA	NA	NA	NA
WP_042863384.1\|1867763_1868168_-	hypothetical protein	Q6UAX1	Klebsiella_phage	1.6e-39	66.4
WP_042863341.1\|1868179_1868560_-	hypothetical protein	Q6UAX2	Klebsiella_phage	1.0e-43	71.1
WP_042863343.1\|1868540_1868882_-\|head,tail	head-tail adaptor protein	Q6UAX3	Klebsiella_phage	1.3e-37	66.4
WP_042863344.1\|1868878_1869202_-\|head,tail	phage gp6-like head-tail connector protein	Q7Y407	Yersinia_phage	2.0e-32	64.2
WP_058663340.1\|1869182_1869635_-	hypothetical protein	Q6UAX5	Klebsiella_phage	1.2e-14	65.0
WP_042863346.1\|1869694_1870990_-\|capsid	phage major capsid protein	Q6UAX6	Klebsiella_phage	4.9e-175	74.4
WP_164691887.1\|1871058_1871715_-	S49 family peptidase	Q6UAX7	Klebsiella_phage	7.8e-60	46.6
WP_050861117.1\|1871748_1873008_-\|portal	phage portal protein	Q6UAX8	Klebsiella_phage	6.2e-191	77.2
WP_164691888.1\|1873007_1873187_-	hypothetical protein	NA	NA	NA	NA
WP_042863349.1\|1873180_1874896_-\|terminase	terminase large subunit	Q6UAY0	Klebsiella_phage	2.4e-278	79.3
WP_042863351.1\|1874930_1875365_-\|terminase	P27 family phage terminase small subunit	Q6UAY1	Klebsiella_phage	5.5e-62	80.6
WP_045351068.1\|1875502_1875862_-	HNH endonuclease	Q6UAS2	Klebsiella_phage	3.0e-50	73.3
WP_045351067.1\|1876236_1876557_+	hypothetical protein	NA	NA	NA	NA
WP_052686676.1\|1877028_1877466_-	hypothetical protein	NA	NA	NA	NA
WP_045351066.1\|1877600_1878038_-	hypothetical protein	NA	NA	NA	NA
WP_045351065.1\|1878366_1878906_-	hypothetical protein	K7PHH7	Enterobacteria_phage	5.6e-72	78.9
WP_045351064.1\|1878902_1879439_-	lysozyme	K7PM52	Enterobacteria_phage	1.1e-80	79.4
WP_023292747.1\|1879438_1879654_-	hypothetical protein	H9C183	Pectobacterium_phage	1.0e-24	75.4
WP_058663377.1\|1880882_1881488_-	hypothetical protein	H9C175	Pectobacterium_phage	2.5e-81	72.0
WP_058663343.1\|1881500_1882520_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	4.0e-95	51.6
WP_032658080.1\|1882983_1883238_-	cloacin	NA	NA	NA	NA
WP_164691889.1\|1883247_1884825_-	colicin	NA	NA	NA	NA
WP_080337586.1\|1885108_1885342_-	hypothetical protein	H6WRY6	Salmonella_phage	3.3e-21	66.2
WP_164691890.1\|1885380_1885614_-	DinI-like family protein	K7PM44	Enterobacteria_phage	1.9e-24	70.1
WP_164691891.1\|1885962_1886337_-	hypothetical protein	M9NZE4	Enterobacteria_phage	6.9e-13	54.8
WP_164691892.1\|1886336_1886669_-	hypothetical protein	NA	NA	NA	NA
WP_164691893.1\|1886929_1887349_-	PerC family transcriptional regulator	NA	NA	NA	NA
WP_080337585.1\|1887363_1888035_-	replication protein	A0A0U2JGJ0	Escherichia_phage	6.1e-68	77.5
WP_063158485.1\|1888915_1889470_-	hypothetical protein	M9NZI6	Enterobacteria_phage	1.7e-15	33.0
WP_040017166.1\|1889472_1889703_-	Cro/Cl family transcriptional regulator	H6WRX5	Salmonella_phage	8.0e-20	60.5
WP_080317437.1\|1889792_1890230_+	helix-turn-helix domain-containing protein	H6WRX4	Salmonella_phage	1.6e-37	59.0
WP_154817221.1\|1890591_1890906_-	hypothetical protein	NA	NA	NA	NA
WP_120266921.1\|1893017_1893737_+	3'-5' exoribonuclease	K7PLW7	Enterobacteria_phage	4.1e-62	57.5
WP_071785721.1\|1893789_1894035_+	excisionase	NA	NA	NA	NA
WP_164691895.1\|1894015_1895143_+\|integrase	tyrosine-type recombinase/integrase	O21925	Phage_21	5.5e-122	58.6
WP_126514517.1\|1895160_1896201_-	DNA cytosine methyltransferase	A0A0R6PG08	Moraxella_phage	9.1e-63	40.5
WP_164691896.1\|1896224_1898054_-	AAA family ATPase	NA	NA	NA	NA
WP_003857898.1\|1898424_1899675_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	7.9e-21	94.4
WP_032619914.1\|1899792_1900455_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_032619915.1\|1900454_1900928_+	NUDIX hydrolase	NA	NA	NA	NA
1900645:1900660	attR	NA	NA	NA	NA
WP_032103856.1\|1900968_1902081_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_006809213.1\|1902108_1902738_+	high frequency lysogenization protein HflD	NA	NA	NA	NA
WP_017693620.1\|1902757_1904128_+	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	1.1e-108	45.8
WP_032619916.1\|1904213_1904669_-	anti-adapter protein IraM	NA	NA	NA	NA
WP_026094318.1\|1905082_1905754_+	two-component system response regulator PhoP	NA	NA	NA	NA
WP_032634007.1\|1905754_1907218_+	two-component system sensor histidine kinase PhoQ	NA	NA	NA	NA
WP_017384706.1\|1907309_1908431_+	cupin domain-containing protein	NA	NA	NA	NA
WP_023303482.1\|1908522_1909014_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_7

2742996 : 2755585

Morganella_phage(20.0%)

integrase

attL 2746065:2746079|attR 2760399:2760413

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_152044020.1\|2742996_2745771_-	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	9.9e-298	57.3
WP_152043993.1\|2745783_2746410_-	hypothetical protein	A0A286S1S7	Klebsiella_phage	2.9e-24	36.6
2746065:2746079	attL	NA	NA	NA	NA
WP_047724781.1\|2746406_2746628_-	hypothetical protein	NA	NA	NA	NA
WP_058648769.1\|2746624_2746888_-	hypothetical protein	NA	NA	NA	NA
WP_125375328.1\|2746884_2747619_-	host cell division inhibitor Icd-like protein	Q8SBF3	Shigella_phage	5.0e-07	35.8
WP_109555193.1\|2747669_2748503_-	antA/AntB antirepressor family protein	A0A0P0ZG08	Escherichia_phage	1.3e-22	48.0
WP_033146207.1\|2748516_2748951_-	hypothetical protein	A0A1W6JPH9	Morganella_phage	8.0e-29	54.3
WP_048241341.1\|2748950_2749148_-	AlpA family transcriptional regulator	A0A1V0E8E5	Vibrio_phage	3.0e-07	45.3
WP_164692039.1\|2749364_2750141_-	hypothetical protein	NA	NA	NA	NA
WP_164691931.1\|2750291_2751506_-\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	5.7e-133	57.0
WP_017383130.1\|2751858_2753112_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	6.2e-98	46.6
WP_015571369.1\|2753123_2754227_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.0e-59	39.9
WP_017383128.1\|2754532_2755585_+	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	2.0e-118	60.9
2760399:2760413	attR	NA	NA	NA	NA

DBSCAN-SWA_8

3126618 : 3134123

Enterobacteria_phage(85.71%)

integrase

attL 3120580:3120592|attR 3134846:3134858

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3120580:3120592	attL	NA	NA	NA	NA
WP_032620857.1\|3126618_3127068_-	hypothetical protein	Q7M298	Enterobacteria_phage	9.7e-46	70.8
WP_032620855.1\|3127060_3127360_-	hypothetical protein	Q7M2A0	Enterobacteria_phage	1.2e-31	70.1
WP_032620854.1\|3127352_3127907_-	ash family protein	Q7M2A7	Enterobacteria_phage	1.5e-35	72.1
WP_026094409.1\|3127903_3128170_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	4.4e-22	62.5
WP_032620852.1\|3128732_3129476_+	hypothetical protein	NA	NA	NA	NA
WP_023323621.1\|3129478_3129697_+	phage transcriptional activator	Q7M294	Enterobacteria_phage	1.0e-16	68.2
WP_017692853.1\|3129725_3130289_+	Polarity suppression protein	Q7M2A1	Enterobacteria_phage	6.0e-61	65.9
WP_032620851.1\|3130627_3131767_+	ATP-binding protein	NA	NA	NA	NA
WP_080288371.1\|3131763_3132825_+	DUF4435 domain-containing protein	NA	NA	NA	NA
WP_032620849.1\|3132860_3134123_-\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	8.2e-74	40.4
3134846:3134858	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP049048

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

43200 : 78378

Enterobacteria_phage(23.08%)

integrase,transposase

attL 74076:74135|attR 87470:88290

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059514180.1\|43200_43911_-\|integrase	tyrosine-type recombinase/integrase	I3WFA4	Macacine_betaherpesvirus	2.2e-15	42.5
WP_032672763.1\|43997_44393_-	hypothetical protein	NA	NA	NA	NA
WP_025760371.1\|45160_46990_+	hypothetical protein	NA	NA	NA	NA
WP_045911952.1\|47239_47689_+	hypothetical protein	NA	NA	NA	NA
WP_025760329.1\|47824_48337_+	hypothetical protein	NA	NA	NA	NA
WP_025760328.1\|48544_49177_+	hypothetical protein	NA	NA	NA	NA
WP_025760327.1\|49231_49420_-	hypothetical protein	E5FFJ6	Burkholderia_phage	2.3e-09	47.3
WP_032635079.1\|49473_49737_-	hypothetical protein	NA	NA	NA	NA
WP_045265524.1\|49767_50619_-	AAA family ATPase	Q8JL10	Natrialba_phage	8.4e-14	30.9
WP_025760324.1\|50806_51007_-	hypothetical protein	NA	NA	NA	NA
WP_045911951.1\|51507_52185_+	DNA methylase	A0A2I7RE86	Vibrio_phage	7.3e-29	36.4
WP_025760322.1\|52184_52406_+	hypothetical protein	NA	NA	NA	NA
WP_025760321.1\|52416_52836_+	DUF1380 domain-containing protein	NA	NA	NA	NA
WP_025760320.1\|52889_53672_+	hypothetical protein	NA	NA	NA	NA
WP_059513632.1\|54078_54609_+	antirestriction protein	A0A1I9S7Y0	Rhodococcus_phage	1.9e-08	28.7
WP_000027057.1\|54768_55629_-	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_001235713.1\|55811_56369_-	recombinase family protein	Q1MVP4	Enterobacteria_phage	7.0e-94	100.0
WP_001143759.1\|56532_59538_+\|transposase	Tn3-like element Tn3 family transposase	Q1MVP5	Enterobacteria_phage	0.0e+00	99.8
WP_001206316.1\|61385_62177_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1	NA	NA	NA	NA
WP_000679427.1\|62340_62688_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259031.1\|62681_63521_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000050481.1\|63925_65467_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_000359986.1\|66865_67639_+	ArmA family 16S rRNA (guanine(1405)-N(7))-methyltransferase	NA	NA	NA	NA
WP_077252464.1\|67619_67901_-	hypothetical protein	NA	NA	NA	NA
WP_002026779.1\|68120_68306_-	hypothetical protein	NA	NA	NA	NA
WP_002001451.1\|68354_69539_+\|transposase	IS4-like element ISEc29 family transposase	A0A0F7LAS3	uncultured_marine_virus	4.5e-50	35.4
WP_000052512.1\|69937_71413_+	ABC-F type ribosomal protection protein Msr(E)	A0A1B0RXA0	Streptococcus_phage	2.3e-160	59.0
WP_000155092.1\|71468_72353_+	Mph(E) family macrolide 2'-phosphotransferase	NA	NA	NA	NA
WP_004896925.1\|72711_73254_-	hypothetical protein	NA	NA	NA	NA
74076:74135	attL	NA	NA	NA	NA
WP_016162063.1\|74138_74843_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	9.0e-139	99.6
WP_089617563.1\|74848_75082_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_021312768.1\|75179_75596_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_021312767.1\|75592_75823_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_042948507.1\|76431_76743_+	hypothetical protein	NA	NA	NA	NA
WP_042948505.1\|76862_77423_+	hypothetical protein	NA	NA	NA	NA
WP_016338374.1\|77601_78378_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	6.0e-51	91.1
87470:88290	attR	NA	NA	NA	NA

DBSCAN-SWA_2

133340 : 141685

Bacillus_phage(16.67%)

integrase

attL 121976:121988|attR 135621:135633

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
121976:121988	attL	NA	NA	NA	NA
WP_045912034.1\|133340_134345_-\|integrase	tyrosine-type recombinase/integrase	A0A0A7AR08	Bacillus_phage	1.3e-05	27.5
WP_058655916.1\|134645_135068_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.2e-29	50.8
WP_058655917.1\|135247_135919_-	DNA breaking-rejoining protein	A0A2H4J5W2	uncultured_Caudovirales_phage	2.8e-81	60.4
135621:135633	attR	NA	NA	NA	NA
WP_058655918.1\|136268_136952_+	DNA methylase	A0A2I7RE86	Vibrio_phage	8.7e-30	36.9
WP_047359680.1\|136948_137173_+	hypothetical protein	NA	NA	NA	NA
WP_058655919.1\|137221_137638_+	DUF1380 family protein	NA	NA	NA	NA
WP_058655920.1\|138048_138555_+	antirestriction protein	A0A1I9S7Y0	Rhodococcus_phage	8.2e-09	31.7
WP_059446943.1\|139375_139606_+	DUF905 domain-containing protein	NA	NA	NA	NA
WP_058672090.1\|139675_141685_+	ParB/RepB/Spo0J family partition protein	G8DH78	Emiliania_huxleyi_virus	2.1e-23	29.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP049047

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP049046

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP049048

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection