CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP049105	Escherichia coli strain EC28 plasmid p5, complete sequence	0 crisprs	NA	0	0
NZ_CP049103	Escherichia coli strain EC28 plasmid pCTX-M-15, complete sequence	0 crisprs	NA	0	0
NZ_CP049104	Escherichia coli strain EC28 plasmid p4, complete sequence	0 crisprs	NA	0	0
NZ_CP049101	Escherichia coli strain EC28 chromosome, complete genome	4 crisprs	WYL,RT,csa3,cas3,DEDDh,PD-DExK,c2c9_V-U4,DinG	4	10
NZ_CP049106	Escherichia coli strain EC28 plasmid p6, complete sequence	0 crisprs	NA	0	0
NZ_CP049102	Escherichia coli strain EC28 plasmid p2, complete sequence	0 crisprs	NA	0	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP049101_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049101_1

2419474-2419597

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP049101_1

>merge|NZ_CP049101|1|2419474-2419597|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>NZ_CP049101|1|1|2419474-2419597|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049101.1\|WP_000212668.1\|2419033_2419339_-\|monooxygenase	unknown	unknown	gnl\|CDD\|182975
NZ_CP049101.1\|WP_001527082.1\|2419911_2421168_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|137602
NZ_CP049101.1\|WP_000648420.1\|2408380_2408617_-\|murein-lipoprotein-Lpp	unknown	unknown	gnl\|CDD\|185294
NZ_CP049101.1\|WP_024186906.1\|2416479_2417292_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182159
NZ_CP049101.1\|WP_000269498.1\|2426240_2427173_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
NZ_CP049101.1\|WP_000190985.1\|2427169_2428195_-\|HTH-type-transcriptional-repressor-PurR	unknown	unknown	gnl\|CDD\|236739
NZ_CP049101.1\|WP_001295403.1\|2408927_2410340_-\|pyruvate-kinase-PykF	unknown	unknown	gnl\|CDD\|181699
NZ_CP049101.1\|WP_000102278.1\|2428493_2428583_+\|stress-response-protein-YnhF	unknown	unknown	unknown
NZ_CP049101.1\|WP_001174939.1\|2421208_2422582_-\|multidrug-efflux-MATE-transporter-MdtK	unknown	unknown	gnl\|CDD\|234981
NZ_CP049101.1\|WP_000528342.1\|2410896_2411106_+\|fumarate-hydratase-FumD	unknown	unknown	gnl\|CDD\|182359
NZ_CP049101.1\|WP_001070247.1\|2411561_2412188_+\|ferredoxin-like-protein	unknown	unknown	gnl\|CDD\|182135
NZ_CP049101.1\|WP_001296102.1\|2414323_2414962_+\|YdhW-family-putative-oxidoreductase-system-protein	unknown	unknown	gnl\|CDD\|182160
NZ_CP049101.1\|WP_001182336.1\|2424916_2426128_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182924
NZ_CP049101.1\|WP_045132677.1\|2428748_2429918_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP049101.1\|WP_001527084.1\|2417303_2418908_-\|FAD-NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|182134
NZ_CP049101.1\|WP_001524760.1\|2415025_2415694_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|274451
NZ_CP049101.1\|WP_000007283.1\|2430063_2430645_-\|superoxide-dismutase-[Fe]	unknown	unknown	gnl\|CDD\|182534
NZ_CP049101.1\|WP_001527086.1\|2415690_2416476_+\|thiosulfate-reductase-cytochrome-B-subunit	unknown	unknown	gnl\|CDD\|184968
NZ_CP049101.1\|WP_000098896.1\|2423477_2424626_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
NZ_CP049101.1\|WP_000493947.1\|2422796_2423438_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846

Protein	Function_ID	Function_description	E-value
NZ_CP049101.1\|WP_000212668.1\|2419033_2419339_-\|monooxygenase	gnl\|CDD\|182975	PRK11118, PRK11118, putative monooxygenase; Provisional.	5.59739e-64
NZ_CP049101.1\|WP_001527082.1\|2419911_2421168_+\|hypothetical-protein	gnl\|CDD\|137602	PRK09945, PRK09945, hypothetical protein; Provisional.	0
NZ_CP049101.1\|WP_000648420.1\|2408380_2408617_-\|murein-lipoprotein-Lpp	gnl\|CDD\|185294	PRK15396, PRK15396, major outer membrane lipoprotein.	2.83509e-37
NZ_CP049101.1\|WP_024186906.1\|2416479_2417292_+\|hypothetical-protein	gnl\|CDD\|182159	PRK09946, PRK09946, hypothetical protein; Provisional.	1.45826e-173
NZ_CP049101.1\|WP_000269498.1\|2426240_2427173_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
NZ_CP049101.1\|WP_000190985.1\|2427169_2428195_-\|HTH-type-transcriptional-repressor-PurR	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
NZ_CP049101.1\|WP_001295403.1\|2408927_2410340_-\|pyruvate-kinase-PykF	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0
NZ_CP049101.1\|WP_045132677.1\|2428748_2429918_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	8.86948e-98
NZ_CP049101.1\|WP_001174939.1\|2421208_2422582_-\|multidrug-efflux-MATE-transporter-MdtK	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
NZ_CP049101.1\|WP_000528342.1\|2410896_2411106_+\|fumarate-hydratase-FumD	gnl\|CDD\|182359	PRK10292, PRK10292, fumarate hydratase FumD.	2.11502e-34
NZ_CP049101.1\|WP_001070247.1\|2411561_2412188_+\|ferredoxin-like-protein	gnl\|CDD\|182135	PRK09898, PRK09898, ferredoxin-like protein.	1.7427e-139
NZ_CP049101.1\|WP_001296102.1\|2414323_2414962_+\|YdhW-family-putative-oxidoreductase-system-protein	gnl\|CDD\|182160	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein.	5.79235e-121
NZ_CP049101.1\|WP_001182336.1\|2424916_2426128_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
NZ_CP049101.1\|WP_001527084.1\|2417303_2418908_-\|FAD-NAD(P)-binding-protein	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
NZ_CP049101.1\|WP_001524760.1\|2415025_2415694_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	7.07519e-77
NZ_CP049101.1\|WP_000007283.1\|2430063_2430645_-\|superoxide-dismutase-[Fe]	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	3.77321e-138
NZ_CP049101.1\|WP_001527086.1\|2415690_2416476_+\|thiosulfate-reductase-cytochrome-B-subunit	gnl\|CDD\|184968	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional.	3.14388e-161
NZ_CP049101.1\|WP_000098896.1\|2423477_2424626_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
NZ_CP049101.1\|WP_000493947.1\|2422796_2423438_+\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	2.24506e-123

>NZ_CP049101.1|WP_000212668.1|2419033_2419339_-|monooxygenase
MATLLQLHFAFNGPFGDAMVEQLEPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLA
>NZ_CP049101.1|WP_001527084.1|2417303_2418908_-|FAD-NAD(P)-binding-protein
MKTIAIVGAGPTGIYTLFSLLQQQTPLSISIFDQADEAGIGMPYSDEENSKLMLANIASIEIPPIYCTYLEWLQKQEASHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNLDLPSETFDLAVIATGHVWPDEEEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVTFHRDNANEKLNITLMSRTGILPEADFYCPIPYEPLHIITDQALNAEIQKGEVGLLDRVFRLIVEEIKFADPDWSQRIALESLNVDSFAQAWFAERKQRDPFDWAEKNLQEVERNKREKHTVPWRYVILRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYATIPSESIRRLLALREAGIIHILALGEDYEMEINESRTVLKTEDNSYSFDVFIDARGQRPLKVKDIPFPGLREQLQKTGDEIPDVGEDYTLQQPEDIRGRVAFGALPRLMHDQPFVQGLTACAEIGEAMARAVVKPASRARRRLSFD
>NZ_CP049101.1|WP_024186906.1|2416479_2417292_+|hypothetical-protein
MIITRADLREWRIGAVMYRWFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLADENFAHQEVSSMQKLATDPGERLFCSQFARSDDHARLGCCEDNARIATAGYAAQIASMGYSVRIGSVGFNSHIGSSGARARVAVTGNSSRISSAGDSSRIANTGMRVRVCTLGERCHVASNGDLVQIASFGANARIANSGDNVHIIASGENSTVVSTGVVDSIILGPGGCAALAYHDGERVRFAVAIEGENNIRAGVRYRLNEQHQFVEC
>NZ_CP049101.1|WP_001527086.1|2415690_2416476_+|thiosulfate-reductase-cytochrome-B-subunit
MNPSQHAEQFQSQLANYVPQFTPQFWPVWLIIAGLLLVGMWLVLGLHALLRARGVKKSATDHGERIYLYSKAVRLWHWSNALLFVLLLASGLINHFALVGETAVKSLVVVHEVCGFLLLACWLGFVLINAVGGNGHHYRIRRQGWLDRAAKQTRFYLFGIMQGEEHPFPATTQSKFNPLQQVAYVGVMYGLLPLLLLTGLLCLYPQAVGDVLPGVRYWLLQAHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH
>NZ_CP049101.1|WP_001524760.1|2415025_2415694_+|4Fe-4S-dicluster-domain-containing-protein
MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNGTQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAETRLAKGFPPICVSACPEHALIFGHEDSPEIQAWLQENKYYQYQLPGAGKPHLYRRFGQHLIKKENV
>NZ_CP049101.1|WP_001296102.1|2414323_2414962_+|YdhW-family-putative-oxidoreductase-system-protein
MNHQDELPLAKVSEIDEAKRQWLQGMRHPVDTVTEPEPAEILAEFIRQHSAAGQLVARAVFLSPPYSVAEEELSVLLENIKQNGDYADIACMTGSQDDYYYSTQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEAAIAAMDVAPEYADIRQVESSTAVLYLFSERFMTYGKAYGLCEWFEVEQFQNP
>NZ_CP049101.1|WP_001070247.1|2411561_2412188_+|ferredoxin-like-protein
MNPVDRPLLNIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV
>NZ_CP049101.1|WP_000528342.1|2410896_2411106_+|fumarate-hydratase-FumD
MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAMETVINALVK
>NZ_CP049101.1|WP_001295403.1|2408927_2410340_-|pyruvate-kinase-PykF
MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVHVL
>NZ_CP049101.1|WP_000648420.1|2408380_2408617_-|murein-lipoprotein-Lpp
MKATKLVLGAVILGSTLLAGCSSNAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNMATKYRK
>NZ_CP049101.1|WP_001527082.1|2419911_2421168_+|hypothetical-protein
MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEGEFSVDKGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGELLVYPGGEASNCEINQGGVFMLAGKASDTLLAGGTMNNLGGEDSDTIVENGAIYRLGTDGLQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGADLQQSTITVQQGGVLILDGSTAKGDSVTFSIGNINLNGGKLWLITDAATQVQLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITDASRQTLCNSLKLQPDQDGIGATLQPA
>NZ_CP049101.1|WP_001174939.1|2421208_2422582_-|multidrug-efflux-MATE-transporter-MdtK
MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMENIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTVSLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRLPSAIILQRAAR
>NZ_CP049101.1|WP_000493947.1|2422796_2423438_+|riboflavin-synthase
MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTEA
>NZ_CP049101.1|WP_000098896.1|2423477_2424626_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIAGARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTISAEQQKMAQERCEGLDVTILLQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLNVDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEIADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR
>NZ_CP049101.1|WP_001182336.1|2424916_2426128_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVSASLSLFLAGFAAAQLLWGPLSDRYGRKPVLFIGLTIFALGSLGMLWVENAATLLILRFVQAVGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQAIFATLFAITVVLILPIFWLKPTTKARNNSQDGLTFTDLLRSKTYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLVLFAVSVIATWAAGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAALQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEVGCQNHGNAEVAHSESH
>NZ_CP049101.1|WP_000269498.1|2426240_2427173_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAFRDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRLVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALKLENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLREPEETPATGD
>NZ_CP049101.1|WP_000190985.1|2427169_2428195_-|HTH-type-transcriptional-repressor-PurR
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQSHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR
>NZ_CP049101.1|WP_000102278.1|2428493_2428583_+|stress-response-protein-YnhF
MSTDLKFSLVTTIIVLGLIVAVGLTAALH
>NZ_CP049101.1|WP_045132677.1|2428748_2429918_+|MFS-transporter
MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMVSLFLSLPKAGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHVTPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWGAATFAVVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPEAVCVANS
>NZ_CP049101.1|WP_000007283.1|2430063_2430645_-|superoxide-dismutase-[Fe]
MSFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA

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Crispr_ID: NZ_CP049101_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049101_2

3073888-3073979

Orphan

Consensus_repeat	Method
CCACCTTTTTTACCTGCTTCAGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP049101_2

>merge|NZ_CP049101|2|3073888-3073979|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGCGCGCTGCGGGTCATTTTTGAAATTACCCCCGCTGTGCTGTCCACCTTTTTTACCTGCTTCTGATGC

>NZ_CP049101|2|2|3073888-3073979|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGC	GCGCTGCGGGTCATTTTTGAAATTACCCCCGCTGTGCTGT
CCACCTTTTTTACCTGCTTCTGATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049101.1\|WP_001151437.1\|3074402_3074999_+\|NAD(P)H:quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|179647
NZ_CP049101.1\|WP_001143120.1\|3075019_3075247_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182285
NZ_CP049101.1\|WP_000209905.1\|3078530_3079130_-\|molecular-chaperone-TorD	unknown	unknown	gnl\|CDD\|235326
NZ_CP049101.1\|WP_164699388.1\|3075284_3076526_-\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	unknown	unknown	gnl\|CDD\|182284
NZ_CP049101.1\|WP_000979522.1\|3063138_3063348_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049101.1\|WP_001524455.1\|3083639_3084668_-\|TMAO-reductase-system-periplasmic-protein-TorT	unknown	unknown	gnl\|CDD\|236801
NZ_CP049101.1\|WP_001063134.1\|3079126_3081673_-\|trimethylamine-N-oxide-reductase-TorA	unknown	unknown	gnl\|CDD\|237909
NZ_CP049101.1\|WP_001126780.1\|3070125_3070512_+\|pyrimidine-utilization-protein-C	unknown	unknown	gnl\|CDD\|274677
NZ_CP049101.1\|WP_001337721.1\|3072445_3073774_+\|pyrimidine-utilization-transport-protein-G	unknown	unknown	gnl\|CDD\|132655
NZ_CP049101.1\|WP_001526825.1\|3063402_3067365_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|236989
NZ_CP049101.1\|WP_001001173.1\|3071329_3071920_+\|malonic-semialdehyde-reductase	unknown	unknown	gnl\|CDD\|180040
NZ_CP049101.1\|WP_001524459.1\|3070519_3071320_+\|pyrimidine-utilization-protein-D	unknown	unknown	gnl\|CDD\|211851
NZ_CP049101.1\|WP_001350175.1\|3068330_3069422_+\|pyrimidine-utilization-protein-A	unknown	unknown	gnl\|CDD\|163355
NZ_CP049101.1\|WP_001230247.1\|3081672_3082845_-\|pentaheme-c-type-cytochrome-TorC	unknown	unknown	gnl\|CDD\|184992
NZ_CP049101.1\|WP_024186896.1\|3069421_3070114_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	unknown	unknown	gnl\|CDD\|163356
NZ_CP049101.1\|WP_001120112.1\|3082974_3083667_+\|two-component-system-response-regulator-TorR	unknown	unknown	gnl\|CDD\|182711
NZ_CP049101.1\|WP_000191701.1\|3067404_3068043_-\|HTH-type-transcriptional-regulator-RutR	unknown	unknown	gnl\|CDD\|184970
NZ_CP049101.1\|WP_000024560.1\|3077970_3078276_+\|chaperone-modulator-CbpM	unknown	unknown	gnl\|CDD\|182346
NZ_CP049101.1\|WP_001524458.1\|3071930_3072425_+\|pyrimidine-utilization-flavin-reductase-protein-F	unknown	unknown	gnl\|CDD\|132654
NZ_CP049101.1\|WP_000420626.1\|3077050_3077971_+\|curved-DNA-binding-protein	unknown	unknown	gnl\|CDD\|182347

Protein	Function_ID	Function_description	E-value
NZ_CP049101.1\|WP_001151437.1\|3074402_3074999_+\|NAD(P)H:quinone-oxidoreductase	gnl\|CDD\|179647	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional.	8.51484e-133
NZ_CP049101.1\|WP_001126780.1\|3070125_3070512_+\|pyrimidine-utilization-protein-C	gnl\|CDD\|274677	TIGR03610, RutC, pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.	5.99808e-85
NZ_CP049101.1\|WP_000209905.1\|3078530_3079130_-\|molecular-chaperone-TorD	gnl\|CDD\|235326	PRK04976, torD, chaperone protein TorD; Validated.	2.26397e-84
NZ_CP049101.1\|WP_164699388.1\|3075284_3076526_-\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	gnl\|CDD\|182284	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional.	0
NZ_CP049101.1\|WP_001524455.1\|3083639_3084668_-\|TMAO-reductase-system-periplasmic-protein-TorT	gnl\|CDD\|236801	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional.	1.61085e-176
NZ_CP049101.1\|WP_001063134.1\|3079126_3081673_-\|trimethylamine-N-oxide-reductase-TorA	gnl\|CDD\|237909	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA.	0
NZ_CP049101.1\|WP_001143120.1\|3075019_3075247_+\|hypothetical-protein	gnl\|CDD\|182285	PRK10174, PRK10174, hypothetical protein; Provisional.	8.66725e-44
NZ_CP049101.1\|WP_001337721.1\|3072445_3073774_+\|pyrimidine-utilization-transport-protein-G	gnl\|CDD\|132655	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).	0
NZ_CP049101.1\|WP_001526825.1\|3063402_3067365_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	gnl\|CDD\|236989	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed.	0
NZ_CP049101.1\|WP_001001173.1\|3071329_3071920_+\|malonic-semialdehyde-reductase	gnl\|CDD\|180040	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional.	1.79055e-130
NZ_CP049101.1\|WP_001524459.1\|3070519_3071320_+\|pyrimidine-utilization-protein-D	gnl\|CDD\|211851	TIGR03611, RutD, pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.	1.01761e-138
NZ_CP049101.1\|WP_001350175.1\|3068330_3069422_+\|pyrimidine-utilization-protein-A	gnl\|CDD\|163355	TIGR03612, RutA, pyrimidine utilization protein A. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the luciferase family defined by pfam00296 and is likely a FMN-dependent monoxygenase. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP049101.1\|WP_001230247.1\|3081672_3082845_-\|pentaheme-c-type-cytochrome-TorC	gnl\|CDD\|184992	PRK15032, PRK15032, pentaheme c-type cytochrome TorC.	0
NZ_CP049101.1\|WP_024186896.1\|3069421_3070114_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	gnl\|CDD\|163356	TIGR03614, RutB, pyrimidine utilization protein B.	1.89272e-169
NZ_CP049101.1\|WP_001120112.1\|3082974_3083667_+\|two-component-system-response-regulator-TorR	gnl\|CDD\|182711	PRK10766, PRK10766, two-component system response regulator TorR.	5.89892e-138
NZ_CP049101.1\|WP_000191701.1\|3067404_3068043_-\|HTH-type-transcriptional-regulator-RutR	gnl\|CDD\|184970	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional.	1.3356e-153
NZ_CP049101.1\|WP_000024560.1\|3077970_3078276_+\|chaperone-modulator-CbpM	gnl\|CDD\|182346	PRK10265, PRK10265, chaperone modulator CbpM.	5.75956e-65
NZ_CP049101.1\|WP_001524458.1\|3071930_3072425_+\|pyrimidine-utilization-flavin-reductase-protein-F	gnl\|CDD\|132654	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.	1.12154e-104
NZ_CP049101.1\|WP_000420626.1\|3077050_3077971_+\|curved-DNA-binding-protein	gnl\|CDD\|182347	PRK10266, PRK10266, curved DNA-binding protein.	0

>NZ_CP049101.1|WP_001337721.1|3072445_3073774_+|pyrimidine-utilization-transport-protein-G
MAMFGFPHWQLKSTSTESGVVAPDERLPFAQTAVMGVQHAVAMFGATVLMPILMGLDPNLSILMSGIGTLLFFFITGGRVPSYLGSSAAFVGVVIAATGFNGQGINPNISIALGGIIACGLVYTVIGLVVMKIGTRWIERLMPPVVTGAVVMAIGLNLAPIAVKNVSASAFDSWMAVMTVLCIGLVAVFTRGMIQRLLILVGLIVACLLYGVMTNVLGLGKAVDFTLVSHAAWFGLPHFSTPAFNGQAMMLIAPVAVILVAENLGHLKAVAGMTGRNMDPYMGRAFVGDGLATMLSGSVGGSGVTTYAENIGVMAVTKVYSTLVFVAAAVIAMLLGFSPKFGALIHTIPAAVIGGASIVVFGLIAVAGARIWVQNSVDLSQNGNLIMVAVTLVLGAGDFALTLGGFTLGGIGTATFGAILLNALLSRRLVDVPPPEVVHQKP
>NZ_CP049101.1|WP_001524458.1|3071930_3072425_+|pyrimidine-utilization-flavin-reductase-protein-F
MNIVDQQTFRDAMSCMGAAVNIITTDGPAGRAGFTASAVCSVTDTPPTLLVCLNRGASVWSVFNENRTLCVNTLSAGQEPLSNLFGGKTPMEHRFAAARWQTGVTGCPQLEKALVSFDCRISQVVSVGTHDILFCAIEAIHRHATPYGLVWFDRSYHALMRPAC
>NZ_CP049101.1|WP_001001173.1|3071329_3071920_+|malonic-semialdehyde-reductase
MNEAVSPGALSTLFTDARTHNGWRETPVSDETLREIYALMKWGPTSANCSPARIVFIRTAEGKERLRPALSSGNLQKTLTAPVTAIVAWDSEFYERLPQLFPHGDARSWFTSSPQLAEETAFRNSSMQAAYLIVACRALGLDTGPMSGFDRQYVDDAFFAGSTLKSNLLINIGYGDSSKLFARLPRLSFEEACGLL
>NZ_CP049101.1|WP_001524459.1|3070519_3071320_+|pyrimidine-utilization-protein-D
MKLSLSPPPYADAPVVVLISGLGGSGSYWLPQLAVLVQEYQVVCYDQRGTGNNPDTLAEDYCIAQMAAELHQALVAAGIERYAVVGHALGALVGMQLALDYPASVTVLVSVNGWLRINTHTRRCFQVREQLLHSGGAQAWVEAQPLFLYPADWMAARAPRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQIICASDDLLVPTACSSELHAALPDSQKMVMRYGGHACNVTDPETFNALLLNGLASLLHHREAAL
>NZ_CP049101.1|WP_001126780.1|3070125_3070512_+|pyrimidine-utilization-protein-C
MPKSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLETIRKVIETAGGTMADVTFNSIFITDWKNYAAINEIYAEFFPGDKPARFCIQCGLVKPDALVEIATIAHIAK
>NZ_CP049101.1|WP_024186896.1|3069421_3070114_+|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB
MTTLTARPEAITFDPQQTALIVVDMQNAYATPGGYLDLAGFDVSTTRPVIANIQTAVTAARAAGMLIIWFQNGWDEQYVEAGGPGSPNFHKSNALKTMRKQPQLQGKLLAKGSWDYQLVDELVPQPGDIVLPKPRYSGFFNTPLDSILRSRGIRHLVFTGIATNVCVESTLRDGFFLEYFGVVLEDATHQAGPEFAQKAALFNIETFFGWVSDVETFCNALSSTSFARIA
>NZ_CP049101.1|WP_001350175.1|3068330_3069422_+|pyrimidine-utilization-protein-A
MKIGVFVPIGNNGWLISTHAPQYMPTFELNKAIVQKAEHYHFDFALSMIKLRGFGGKTEFWDHNLESFTLMAGLAAVTSRIQIYATAATLTLPPAIVARMAATIDSISGGRFGVNLVTGWQKPEYEQMGIWPGDDYFSRRYDYLTEYVQVLRDLWGSGKSDFKGDFFTMDDCRVSPQPSVPMKVICAGQSDAGMAFSARYADFNFCFGKGVNTPTAFAPTAARMKQAAEQTGRDVGSYVLFMVIADETDDAARAKWEHYKAGADEEALSWLTEQSQKDTRSDTDTNVRQMADPTSAVNINMGTLVGSYASVARMLDEVASVPGAEGVLLTFDDFLSGIENFGERIQPLMQCRAHLPALTQEVA
>NZ_CP049101.1|WP_000191701.1|3067404_3068043_-|HTH-type-transcriptional-regulator-RutR
MTQGAVKTTGKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQHLIFMIWASTQHYADFAPQVEAVTGATLRDEVFFNQTVENVQRIIIEGIRPR
>NZ_CP049101.1|WP_001526825.1|3063402_3067365_+|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase
MGTTTMGVKLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQLENSDTLPELPALLSGAANESDEAPTPAEEPHQPFLDFAEQILPQSVSRAAITAAYRRPETEAVSMLLEQARLPQPVAEQAHKLAYQLADKLRNQKNASGRAGMVQGLLQEFSLSSQEGVALMCLAEALLRIPDKATRDALIRDKISNGNWQSHIGRSPSLFVNAATWGLLFTGKLVSTHNEASLSRSLNRIIGKSGEPLIRKGVDMAMRLMGEQFVTGETIAEALANARKLEEKGFRYSYDMLGEAALTAADAQAYMVSYQQAIHAIGKASNGRGIYEGPGISIKLSALHPRYSRAQYDRVMEELYPRLKSLTLLARQYDIGINIDAEEADRLEISLDLLEKLCFEPELAGWNGIGFVIQAYQKRCPLVIDYLIDLATRSRRRLMIRLVKGAYWDSEIKRAQMDGLEGYPVYTRKVYTDVSYLACAKKLLAVPNLIYPQFATHNAHTLAAIYQLAGQNYYPGQYEFQCLHGMGEPLYEQVTGKVADGKLNRPCRIYAPVGTHETLLAYLVRRLLENGANTSFVNRIADTSLPLDELVADPVTAVEKLAQQEGQTGLPHPKIPLPRDLYGHGRDNSAGLDLANEHRLASLSSALLNSALQKWQSLPMLEQPVAAGEMSPVINPAEPKDIVGYVREATPREVEQALESAVNNAPIWFATPPAERAAILHRAAVLMESQMQQLIGILVREAGKTFSNAIAEVREAVDFLHYYAGQVRDDFANETHRPLGPVVCISPWNFPLAIFTGQIAAALAAGNSVLAKPAEQTPLIAAQGIAILLEAGVPPGVVQLLPGRGETVGAQLTGDDRVRGVMFTGSTEVATLLQRNIASRLDAQGRPIPLIAETGGMNAMIVDSSALTEQVVIDVLASAFDSAGQRCSALRVLCLQDEIADHTLKMLRGAMAECRMGNPGRLTTDIGPVIDSEAKANIERHIQTMRSKGRQMFQAVRENSEDAREWQSGTFVAPTLIELDDFAELQKEVFGPVLHVVRYNRNQLPELIEQINASGYGLTLGVHTRIDETIAQVTGSAQVGNLYVNRNMVGAVVGVQPFGGEGLSGTGPKAGGPLYLYRLLANRPESALAVTLARQDAEYPVDVQLKAALTQPLNALREWAANRPELQALCTQYGELAQAGTQRFLPGPTGERNTWTLLPRERVLCIADDEQDALTQLAAVLAVGSQVLWPDDALHRQLVKALPSAVSERIQLAKAENITAQPFDAVIFHGDSDQLRALCEAVAARDGAIVSVQGFARGESNILLERLYIERSLSVNTAAAGGNASLMTIG
>NZ_CP049101.1|WP_000979522.1|3063138_3063348_-|hypothetical-protein
MMLQLCATMLNVTCVASLKMNEMLINEIDMTGIKKITQTFSLRQLTFLKGATAKNVRECNLMKNSVAEH
>NZ_CP049101.1|WP_001151437.1|3074402_3074999_+|NAD(P)H:quinone-oxidoreductase
MAKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPIGYAAQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG
>NZ_CP049101.1|WP_001143120.1|3075019_3075247_+|hypothetical-protein
MPTQEAKAHHVGEWASLRNTSPEIAEAIFEVAGYDEKMAEKIWEEGSDEVLVKAFAKTDKDSLFWGEQTIERKNV
>NZ_CP049101.1|WP_164699388.1|3075284_3076526_-|bifunctional-glucose-1-phosphatase/inositol-phosphatase
MNKTLIAATVAGIVLLASNAQAQTVPEGYQLQQVLMMSRHNLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYMGHYMREWLAEQGMVKSGECPPPDTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKMGTMDPTFNPVITDDSAAFSEQAVAAMEKELSKLQLTDSYKLLEQIVNYKDSPACEEKQQCSLVDGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGEIKSDQQWKVLSKLKNGYQDSLFTSPEVARNVAKPLVSYIDKALVTERTSAPKITVLVGHDSNIASLLTALDFKPYQLHDQNERTPIDGKIVFQRWHDSKANRDLMKIEYVYQSAEQLRNADALTLQAPAQRVTLELSGCPIDANGFCPMDKFDSVLNEAVK
>NZ_CP049101.1|WP_000420626.1|3077050_3077971_+|curved-DNA-binding-protein
MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFNRQFHHGDGQSFNAEDFDDIFSSIFGQHARQSRQRPATRGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPVSPWEAALGTKVTVPTLKESILLTIPPGSQAGQRLRVKGKGLVSKKQTGDLYAVLKIVMPPKPDENTAALWQQLADAQSSFEPRKDWGKA
>NZ_CP049101.1|WP_000024560.1|3077970_3078276_+|chaperone-modulator-CbpM
MANVTVTFTITEFCLHTGISEEELNEIVGLGVVEPREIQETTWVFDDHAAIVVQRAVRLRHELALDWPGIAVALTLMDDIAHLKQENRLLRQRLSRFVAHP
>NZ_CP049101.1|WP_000209905.1|3078530_3079130_-|molecular-chaperone-TorD
MTTLTAQQIACVYAWLAQLFSRELDDEQLTQIASAQMAEWFSLLKSEPPLTAAVNGLENSIATLTVRDDARLELAADFCGLFLMTDKQAALPYASAYKQDEQEIKRLLVEAGMETSGNFNEPADHLAIYLELLSHLHFSLGEGTVPARRIDGLRQKTLTALREWLPEFAVRCRQYDSFGFYAALSQLLLVLVECDHQNR
>NZ_CP049101.1|WP_001063134.1|3079126_3081673_-|trimethylamine-N-oxide-reductase-TorA
MNNNDLFQASRRRFLAQLGGLTVAGMLGPSLLTPRRATAAQAATEAVISKEGILTGSHWGAIRATVKDGRFVAAKPFELDKYPSKMIAGLPDHVHNAARIRYPMVRVDWLRKRHLSDTSQRGDNRFVRVSWDEALDMFYEELERVQKTHGPSALLTASGWQSTGMFHNASGMLAKAIALHGNSVGTGGDYSTGAAQVILPRVVGSMEVYEQQTSWPLVLQNSKTIVLWGSDLLKNQQANWWCPDHDVYEYYEQLKAKVAAGEIEVISIDPVVTSTHEYLGREHVKHIAVNPQTDVPLQLALAHTLYSENLYDKNFLANYCVGFEQFLPYLLGEKDGQPKDAAWAEKLTGIDAETIRGLARQMAANRTQIIAGWCVQRMQHGEQWAWMIVVLAAMLGQIGLPGGGFGFGWHYNGAGTPGRKGVILSGFSGSTSIPPVHDNSDYKGYSSTIPIARFIDAILEPGKVINWNGKSVKLPPLKMCIFAGTNPFHRHQQINRIIEGWRKLETVIAIDNQWTSTCRFADIVLPATTQFERNDLDQYGNHSNRGIIAMKQVVPPQFEARNDFDIFRELCRRFNREEAFTEGLDEMGWLKRIWQEGVQQGKGRGVHLPAFDDFWNNKEYVEFDHPQMFVRHQAFREDPDLEPLGTPSGLIEIYSKTIADMNYDDCQGHPMWFEKIERSHGGPGSQKYPLHLQSVHPDFRLHSQLCESETLRQQYTVAGKEPVFISPQDASARGIRHGDVVRVFNVRGQVLAGAVVSDRYAPGVARIHEGAWYDPDKGGEPGALCKYGNPNVLTIDIGTSQLAQATSAHTTLVEIEKYNGTVEQVTAFNGPVEMVAQCEYVPASQVKS
>NZ_CP049101.1|WP_001230247.1|3081672_3082845_-|pentaheme-c-type-cytochrome-TorC
MRKLWNALRRPSARWSVLALVATGIVIGIALIVLPHVGIKVTSTTEFCVSCHSMQPVYEEYKQSVHFQNASGVRAECHDCHIPPDIPGMVKRKLEASNDIYQTFIAHSIDTPEKFEAKRAELAEREWARMKENNSATCRSCHNYDAMDHAKQHPEAARQMKVAAKDNQSCIDCHKGIAHQLPDMSSGFRKQFDELRASANDSGDTLYSIDIKPIYAAKGDKEASGSLLPASEVKVLKRDGDWLQIEITGWTESAGRQRVLTQFPGKRIFVASIRGDVQQQVKTLEKTTVADTNTEWSKLQATAWMKKGDMVNDIKPIWAYADSLYNGTCNQCHGAPEISHFDANGWIGTLNGMIGFTSLDKREERTLLKYLQMNASDTAGKAHGDKKEEK
>NZ_CP049101.1|WP_001120112.1|3082974_3083667_+|two-component-system-response-regulator-TorR
MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQPVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADVC
>NZ_CP049101.1|WP_001524455.1|3083639_3084668_-|TMAO-reductase-system-periplasmic-protein-TorT
MRVLLFLLLSLFMLSAFSADNLLRWHDAQHYTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQKQVANLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWSHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVMTPKNADREHIRRSLSPGGFRPVYFYQHTSAAKK

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Crispr_ID: NZ_CP049101_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049101_3

3195617-3195699

Orphan

I-F

Consensus_repeat	Method
ATCTGCCTGTACGGCAGTGAACT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP049101_3

>merge|NZ_CP049101|3|3195617-3195699|CRISPRCasFinder
ATCTGCCTGTACGGCAGTGAACTTGTCATTATTGGCAGACAGGATCCGCGGCAATTTCTAAGCTGCCTGTACGGCAGTGAACT

>NZ_CP049101|3|3|3195617-3195699|CRISPRCasFinder
ATCTGCCTGTACGGCAGTGAACT	TGTCATTATTGGCAGACAGGATCCGCGGCAATTTCTA
AGCTGCCTGTACGGCAGTGAACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049101.1\|WP_024186894.1\|3189399_3190365_+\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|182343
NZ_CP049101.1\|WP_022296401.1\|3192254_3193976_+\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	unknown	unknown	gnl\|CDD\|236865
NZ_CP049101.1\|WP_001526800.1\|3207460_3209113_+\|hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|235391
NZ_CP049101.1\|WP_000228473.1\|3188361_3188856_-\|leucine-responsive-transcriptional-regulator-Lrp	unknown	unknown	gnl\|CDD\|183009
NZ_CP049101.1\|WP_001040187.1\|3195006_3195225_+\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
NZ_CP049101.1\|WP_001298299.1\|3205402_3206098_+\|aquaporin-Z	unknown	unknown	gnl\|CDD\|235453
NZ_CP049101.1\|WP_012896759.1\|3202372_3203323_+\|DUF535-domain-containing-protein	unknown	unknown	gnl\|CDD\|225537
NZ_CP049101.1\|WP_000886683.1\|3180613_3181906_-\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
NZ_CP049101.1\|WP_000746478.1\|3201100_3202216_-\|macrolide-transporter-subunit-MacA	unknown	unknown	gnl\|CDD\|183211
NZ_CP049101.1\|WP_000599803.1\|3203319_3204978_-\|ATP-dependent-endonuclease	unknown	unknown	gnl\|CDD\|226121
NZ_CP049101.1\|WP_001526803.1\|3194017_3194722_+\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
NZ_CP049101.1\|WP_000520781.1\|3198217_3198538_-\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NZ_CP049101.1\|WP_001524406.1\|3199157_3201104_-\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	unknown	unknown	gnl\|CDD\|182528
NZ_CP049101.1\|WP_022296400.1\|3190487_3192254_+\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	unknown	unknown	gnl\|CDD\|236870
NZ_CP049101.1\|WP_000934041.1\|3195910_3198187_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
NZ_CP049101.1\|WP_000410785.1\|3198860_3199085_+\|cold-shock-like-protein-CspD	unknown	unknown	gnl\|CDD\|77494
NZ_CP049101.1\|WP_001524414.1\|3184120_3188227_-\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|236669
NZ_CP049101.1\|WP_001295343.1\|3183350_3183962_-\|outer-membrane-lipoprotein-chaperone-LolA	unknown	unknown	gnl\|CDD\|129638
NZ_CP049101.1\|WP_001526801.1\|3206417_3207317_+\|L-lysine-exporter-LysO	unknown	unknown	gnl\|CDD\|225287
NZ_CP049101.1\|WP_000067797.1\|3181996_3183340_-\|replication-associated-recombination-protein-RarA	unknown	unknown	gnl\|CDD\|237355

Protein	Function_ID	Function_description	E-value
NZ_CP049101.1\|WP_024186894.1\|3189399_3190365_+\|thioredoxin-disulfide-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	0
NZ_CP049101.1\|WP_022296401.1\|3192254_3193976_+\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP049101.1\|WP_001526800.1\|3207460_3209113_+\|hydroxylamine-reductase	gnl\|CDD\|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0
NZ_CP049101.1\|WP_000228473.1\|3188361_3188856_-\|leucine-responsive-transcriptional-regulator-Lrp	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	5.32926e-117
NZ_CP049101.1\|WP_001040187.1\|3195006_3195225_+\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	8.41354e-49
NZ_CP049101.1\|WP_001298299.1\|3205402_3206098_+\|aquaporin-Z	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	2.04944e-144
NZ_CP049101.1\|WP_012896759.1\|3202372_3203323_+\|DUF535-domain-containing-protein	gnl\|CDD\|225537	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown].	3.94357e-131
NZ_CP049101.1\|WP_000886683.1\|3180613_3181906_-\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
NZ_CP049101.1\|WP_000746478.1\|3201100_3202216_-\|macrolide-transporter-subunit-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
NZ_CP049101.1\|WP_000599803.1\|3203319_3204978_-\|ATP-dependent-endonuclease	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
NZ_CP049101.1\|WP_001526803.1\|3194017_3194722_+\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	1.8761e-140
NZ_CP049101.1\|WP_000520781.1\|3198217_3198538_-\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	2.48686e-49
NZ_CP049101.1\|WP_001524406.1\|3199157_3201104_-\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
NZ_CP049101.1\|WP_022296400.1\|3190487_3192254_+\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP049101.1\|WP_000934041.1\|3195910_3198187_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
NZ_CP049101.1\|WP_000410785.1\|3198860_3199085_+\|cold-shock-like-protein-CspD	gnl\|CDD\|77494	PRK09937, PRK09937, cold shock-like protein CspD.	1.48016e-47
NZ_CP049101.1\|WP_001524414.1\|3184120_3188227_-\|DNA-translocase-FtsK	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0
NZ_CP049101.1\|WP_001295343.1\|3183350_3183962_-\|outer-membrane-lipoprotein-chaperone-LolA	gnl\|CDD\|129638	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself. [Protein fate, Protein and peptide secretion and trafficking].	1.48786e-125
NZ_CP049101.1\|WP_001526801.1\|3206417_3207317_+\|L-lysine-exporter-LysO	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	3.07671e-117
NZ_CP049101.1\|WP_000067797.1\|3181996_3183340_-\|replication-associated-recombination-protein-RarA	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0

>NZ_CP049101.1|WP_001040187.1|3195006_3195225_+|translation-initiation-factor-IF-1
MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>NZ_CP049101.1|WP_001526803.1|3194017_3194722_+|leucyl/phenylalanyl-tRNA--protein-transferase
MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPESLHISRSMKRFHKRSPYRVTMNYAFGQVIEGCASDREEGTWITRGVVEAYHRLHELGHAHSIEVWREGELVGGMYGVAQGTLFCGESMFSRMENASKTALLVFCDEFIRHGGKLIDCQVLNDHTASLGACEIPRRDYLNYLNQMRPERLPNNFWVPRRLFSPQE
>NZ_CP049101.1|WP_022296401.1|3192254_3193976_+|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC
MRALLPYLALYKRHKWMLSLGIVLAIVTLLASIGLLTLSGWFLSASAVAGVAGLYSFNYMLPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPAGLARYRQGELLNRVVADVDTLDHLYLRVISPLVGAFVVIMVVTIGFSFLDFTLAFTLGGIMLLTLFLMPPLFYRAGKSTGQNLTHLRGQYRQQLTAWLQGQAELTIFGASDRYRTQLENTEIQWLEAQRRQSELTALSQAIMLLIGALAVILMLWMASGGVGGNAQPGALIALFVFCALAAFEALAPVTGAFQHLGQVIASAVRISDLTDQKPEVTFPDTQTRVADRVSLTLRDVQFTYPEQSQQALKGISLQVNAGEHIAILGRTGCGKSTLLQLLTRAWDPQQGEILLNNSPLASLNEAALRQTISVVPQRVHLFSATLRDNLLLASPDSSDEALAEILRRVGLEKLLEDAGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLVLLDEPTEGLDATTESQILELLAEMMREKTVLMVTHRLRGLSRFQQIIVMDNGQIIEQGTHAELLARQGRYYQFKQGL
>NZ_CP049101.1|WP_022296400.1|3190487_3192254_+|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD
MNKSRQKELTRWLKQQSVISQRWLNISRLLGFVSGILIIAQAWFMARILQHMIMENIPREALLLPFTLLFLTFVLRAWVVWLRERVGYHAGQHIRFAIRRQVLDRLQQAGPAWIQGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVSVPLLIVVAIFPSNWAAALILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIFGRGEAEIESIRSASEDFRQRTMEVLRLAFLSSGILEFFTSLSIALVAVYFGFSYLGELDFGHYDTGVTLAAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFMETPLAHPQRGEAELASTDPVTIEAEDLFITSPEGKTLAGPLNFTLPAGQRAVLVGRSGSGKSSLLNALSGFLSYQGSLRINGIELRDLSPESWRKHLSWVGQNPQLPAATLRDNVLLARPDASEQELQTALDNAWVSEFLPLLPQGVDTPVGDQAARLSVGQAQRVAVARALLNPCSLLLLDEPAASLDAHSEQRVMEALNAASLRQTTLMVTHQLEDLADWDVIWVMQDGQIIEQGRYAELSVAGGPFAILLAHRQEEI
>NZ_CP049101.1|WP_024186894.1|3189399_3190365_+|thioredoxin-disulfide-reductase
MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVIGDQMGVTGVRLRDTQNTDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLADAK
>NZ_CP049101.1|WP_000228473.1|3188361_3188856_-|leucine-responsive-transcriptional-regulator-Lrp
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
>NZ_CP049101.1|WP_001524414.1|3184120_3188227_-|DNA-translocase-FtsK
MSQEYTEDKEVTLTKLSSGRRLLEALLILIVLFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQSSDEYIDYFAVSLRIIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHSSGGTIALLCVWAAGLTLFTGWSWVTIAEKLGGWILNILTFASNRTRRDDTWVDEDEYEDDEEYEDENHGKQHESRRARILRGALARRKRLAEKFINPMGRQTDAALFSGKRMDDDEEITYTARGVAADPDDVLFSGNRATQPEYDEYDPLLNGAPITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVAPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQPQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAAEQPVQQPYYATAAEQPAQQPYYAPAPEQAVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPTRPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANSGGPRPQVKEGIGPQLPRPKRIRVPTRRELASYGIKLPSQRAAEEKAREAQRNQYDSGDQYNDDEIDAMQQDELARQFAQTQQQRYGEQYQHDVPVNTEDADAAAEAELARQFAQTQQQRYSGEQPAGANPFSLDDFEFSPMKALLDDGPHEPLFTPIVEPVQQPQQPIAPQQQYQQPQQPVAPQPQYQQPQQPVAPQQQYQQPQQPVAPQQQYQQPQQPVTQQPQYQQPQQPVVPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPLHKPTTPLPSLDLLTPPPSEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRDNPSPLTVVLGKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESLLGMGDMLYSGPNSTLPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGAGGFDGAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLAPPPFD
>NZ_CP049101.1|WP_001295343.1|3183350_3183962_-|outer-membrane-lipoprotein-chaperone-LolA
MKKIAITCALLSSLVASSVWADAASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWLKDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKASNGNLKQFTINVGRDGTIHQFSAVEQDDQRSSYQLKSQQNGAVDAAKFTFTPPQGVTVDDQRK
>NZ_CP049101.1|WP_000067797.1|3181996_3183340_-|replication-associated-recombination-protein-RarA
MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAVGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEANAYAAGEVYFPPEIAQTRYYFPTNRGLEGKIGEKLAWLAEQDQNSPIKRYR
>NZ_CP049101.1|WP_000886683.1|3180613_3181906_-|serine--tRNA-ligase
MLDPNLLRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEELDAAKAELDALQAEIRDIALTIPNLPADEVPVGKDENDNVEVSRWGTPREFDFEVRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSENYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADTSNYALIPTAEVPLTNLVRGEIIDEDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQIVRPEDSMAALEEMTGHAEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSGLAVGRTLVAVMENYQQADGRIEVPEVLRPYMNGLEYIG
>NZ_CP049101.1|WP_000934041.1|3195910_3198187_-|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPTQSSDPGSQPNSEEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKNELTYGFQSAQKHKAEAAH
>NZ_CP049101.1|WP_000520781.1|3198217_3198538_-|ATP-dependent-Clp-protease-adapter-ClpS
MGKTNDWLDFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA
>NZ_CP049101.1|WP_000410785.1|3198860_3199085_+|cold-shock-like-protein-CspD
MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKGNHASVIVPVEVEAAVA
>NZ_CP049101.1|WP_001524406.1|3199157_3201104_-|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB
MTPLLELKDIRRSYPAGDEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKATSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAEQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRTEYYPAQLSGGQQQRVSIVRALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAIEKVNATGGTEPVVNTASGWRQFVSGFNEALTMAWRALAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQMVLADIRSIGTNTIDVYPGKDFGDDDPQYQQALKYDDLIAIQKQPWVASATPAVSQNLRLRYNNVDVAASANGVSGDYFNVYGMTFSEGNTFNQEQLNGRAQVVVLDSNTRRQLFPHKADVVGEVILVGNMPARVIGVAEEKQSMFGSSKVLRVWLPYSTMSGRVMGQSWLNSITVRVKEGFDSAEAEQQLTRLLSLRHGKKDFFTWNMDGVLKTVEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGALGITLSLLIAFTLQLFLPGWEIGFSPLALLLAFLCSTVTGILFGWLPARNAARLDPVDALARE
>NZ_CP049101.1|WP_000746478.1|3201100_3202216_-|macrolide-transporter-subunit-MacA
MKKRKTVKKRYVIAMVIVIAGLITLWRILNAPVPTYQTLIVRPGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGQIKDVLPTPEKINDAIFYYARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETREREVTIGARNDTDVEIVKGLEAGDEVVIGEAKPGAAQ
>NZ_CP049101.1|WP_012896759.1|3202372_3203323_+|DUF535-domain-containing-protein
MSQLTERTFTPSESLSSLSLFLSLARGQCRPGKFWHRRSFRQKFLLRSLIMPRLSVEWMNELSHWPNLNVLLTRQPRLPVRLHRPYLAANLSRKQLLEALRYHYALLRGCMSAEEFSLYLNTPGLQLAKLEGKNGEQFTLELTMMISMDKEGDSTILFRNSEGIPLAELTFTLCEYQGKRTMFIGGLQGAKWEIPHQEIQNATKACHGLFPKRLVMEAACLFAQRLQVEQIIAVSNETHIYRSLRYRDKEGKIHADYNAFWESVGGVCDAERHYRLPAQIARKEIAEIASKKRAEYRRRYEMLDAIQPQMATMFCS
>NZ_CP049101.1|WP_000599803.1|3203319_3204978_-|ATP-dependent-endonuclease
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPESDLYHFERDDFWFPPGDINGREHHLHIILTFRESLPGRHRVRRYRPLEACWTPCTDGYHRIFYRLEGESAEDGSVMTLRSFLDKDGHPIDVEDINDQARHLVRLMPVLRLRDARFMRRIRNGTVPNVPNVEVTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEHYFSEQGAGQARYRLMRRRASNEQRSWRYLDIINRMIDRPGGRSYRVILLGLFATLLQAKGTLRLDKDARPLLLIEDPETRLHPIMLSVAWHLLNLLPLQRIATTNSGELLSLTPVEHVCRLVRESSRVAAWRLGPSGLSTEDSRRISFHIRFNRPSSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREAEREHLTALPALDMEHFMYRQGFSDVFHRVAQIPENIPMNLRKIISKAIHRSSKPDLAIEVAMEAGRRGVDSVPTLLKKMFSRVLWLARGRAD
>NZ_CP049101.1|WP_001298299.1|3205402_3206098_+|aquaporin-Z
MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKRD
>NZ_CP049101.1|WP_001526801.1|3206417_3207317_+|L-lysine-exporter-LysO
MFSGLLIILVPLIVGYLIPLRQKAALRVINQLLSWMVYLILFFMGISLAFLDNLASNLLAILHYSAVSITVILLCNIAALMWLERCLPWRNHHQQEKLPSRIAMALESLKLCGVVVIGFAIGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQIVLNRRGMIVAVVVVASSLIGGLINAFILDLSINTALAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMVPAAIVHGFILSLLVPILIAFFSA
>NZ_CP049101.1|WP_001526800.1|3207460_3209113_+|hydroxylamine-reductase
MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIATLQGLSAWAVKAREYGIINHDVDSFAPRAFFSTLTNVNFDSPRIIGYAREAIALREALKAQCLAVDANARVDNPMADLQLVSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLKGAAAYMEHAHVLGQYDNDIYAQYHKIMAWLGTWPADMNALLECSMEIGQMNFKVMSILDAGETGKYGHPTPTQVNVKATAGKCILISGHDLKDLYNLLEQTEGTGVNVYTHGEMLPAHGYPELRKFKHLVGNYGSGWQNQQEEFARFPGPIVMTSNCIIDPTVGAYDDRIWTRSIVGWPGVRHLDGEDFSAVIAQAQQMAGFPYSEIPHLITVGFGRQTLLGAADTLIDLVSREKLRHIFLLGGCDGARGERHYFTDFATSVPDDCLILTLACGKYRFNKLEFGDIEGLPRLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVKNIVTGPTAPGFLTPDLLAVLNEKFGLRSITTVEEDMKQLLSA

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Crispr_ID: NZ_CP049101_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049101_4

4085346-4085478

Orphan

Consensus_repeat	Method
ATCACCAATATTGAAAA	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP049101_4

>merge|NZ_CP049101|4|4085346-4085478|PILER-CR
ATCACCAATATTGAAAATGTCACACGCAGATAAATCCAACTTTCAATATTGTTAAGCTCCTCACCAATATTGAAAACATGGCGTAGAAAAAAGAAATTTTCAATATTGTTTTATGGATCACCAATATTGAAAG

>NZ_CP049101|4|1|4085346-4085478|PILER-CR
ATCACCAATATTGAAAA	TGTCACACGCAGATAAATCCAACTTTCAATATTGTTAAGCTC
CTCACCAATATTGAAAA	CATGGCGTAGAAAAAAGAAATTTTCAATATTGTTTTATGG
ATCACCAATATTGAAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049101.1\|WP_000004399.1\|4091495_4092281_+\|crotonobetainyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|179599
NZ_CP049101.1\|WP_001523929.1\|4089833_4091387_+\|crotonobetaine/carnitine-CoA-ligase	unknown	unknown	gnl\|CDD\|181195
NZ_CP049101.1\|WP_001160966.1\|4076717_4077032_-\|CcdB-family-protein	unknown	unknown	gnl\|CDD\|376629
NZ_CP049101.1\|WP_001091518.1\|4083528_4084470_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|235120
NZ_CP049101.1\|WP_001523932.1\|4080517_4081849_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340874
NZ_CP049101.1\|WP_000333124.1\|4092995_4093391_-\|carnitine-metabolism-transcriptional-regulator-CaiF	unknown	unknown	gnl\|CDD\|183154
NZ_CP049101.1\|WP_000203741.1\|4081907_4082195_-\|ferredoxin-like-protein-FixX	unknown	unknown	gnl\|CDD\|185346
NZ_CP049101.1\|WP_000349942.1\|4088543_4089761_+\|L-carnitine-CoA-transferase	unknown	unknown	gnl\|CDD\|179589
NZ_CP049101.1\|WP_001126341.1\|4093651_4096873_-\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
NZ_CP049101.1\|WP_000600732.1\|4079879_4080410_-\|glutathione-regulated-potassium-efflux-system-oxidoreductase-KefF	unknown	unknown	gnl\|CDD\|234852
NZ_CP049101.1\|WP_000196510.1\|4093425_4093644_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049101.1\|WP_001287715.1\|4082191_4083478_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182273
NZ_CP049101.1\|WP_000787104.1\|4085727_4087242_+\|L-carnitine/gamma-butyrobetaine-antiport-BCCT-transporter	unknown	unknown	gnl\|CDD\|179568
NZ_CP049101.1\|WP_000122882.1\|4092286_4092877_+\|carnitine-operon-protein-CaiE	unknown	unknown	gnl\|CDD\|184189
NZ_CP049101.1\|WP_000125566.1\|4077034_4077268_-\|antitoxin	unknown	unknown	gnl\|CDD\|227619
NZ_CP049101.1\|WP_001523933.1\|4078024_4079887_-\|glutathione-regulated-potassium-efflux-system-protein-KefC	unknown	unknown	gnl\|CDD\|235131
NZ_CP049101.1\|WP_001523925.1\|4096890_4098039_-\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|237139
NZ_CP049101.1\|WP_000624375.1\|4077353_4077833_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
NZ_CP049101.1\|WP_001523930.1\|4084484_4085255_-\|electron-transfer-flavoprotein-FixA	unknown	unknown	gnl\|CDD\|179569
NZ_CP049101.1\|WP_000347117.1\|4087272_4088415_+\|crotonobetainyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|179566

Protein	Function_ID	Function_description	E-value
NZ_CP049101.1\|WP_000004399.1\|4091495_4092281_+\|crotonobetainyl-CoA-hydratase	gnl\|CDD\|179599	PRK03580, PRK03580, crotonobetainyl-CoA hydratase.	6.92249e-179
NZ_CP049101.1\|WP_001523929.1\|4089833_4091387_+\|crotonobetaine/carnitine-CoA-ligase	gnl\|CDD\|181195	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated.	0
NZ_CP049101.1\|WP_001160966.1\|4076717_4077032_-\|CcdB-family-protein	gnl\|CDD\|376629	pfam01845, CcdB, CcdB protein.	6.31846e-38
NZ_CP049101.1\|WP_001091518.1\|4083528_4084470_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|235120	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein.	0
NZ_CP049101.1\|WP_001523932.1\|4080517_4081849_-\|MFS-transporter	gnl\|CDD\|340874	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily. This family is composed of metazoan synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters including those that transport inorganic phosphate (Pht), aromatic compounds (PcaK and related proteins), proline/betaine (ProP), alpha-ketoglutarate (KgtP), citrate (CitA), shikimate (ShiA), and cis,cis-muconate (MucK), among others. SV2 is a transporter-like protein that serves as the receptor for botulinum neurotoxin A (BoNT/A), one of seven neurotoxins produced by the bacterium Clostridium botulinum. BoNT/A blocks neurotransmitter release by cleaving synaptosome-associated protein of 25 kD (SNAP-25) within presynaptic nerve terminals. Also included in this family is synaptic vesicle 2 (SV2)-related protein (SVOP) and similar proteins. SVOP is a transporter-like nucleotide binding protein that localizes to neurotransmitter-containing vesicles. The SV2-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.77698e-59
NZ_CP049101.1\|WP_000333124.1\|4092995_4093391_-\|carnitine-metabolism-transcriptional-regulator-CaiF	gnl\|CDD\|183154	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF.	2.21297e-74
NZ_CP049101.1\|WP_000203741.1\|4081907_4082195_-\|ferredoxin-like-protein-FixX	gnl\|CDD\|185346	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional.	1.84173e-69
NZ_CP049101.1\|WP_000349942.1\|4088543_4089761_+\|L-carnitine-CoA-transferase	gnl\|CDD\|179589	PRK03525, PRK03525, L-carnitine CoA-transferase.	0
NZ_CP049101.1\|WP_001126341.1\|4093651_4096873_-\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NZ_CP049101.1\|WP_000600732.1\|4079879_4080410_-\|glutathione-regulated-potassium-efflux-system-oxidoreductase-KefF	gnl\|CDD\|234852	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF.	2.62905e-133
NZ_CP049101.1\|WP_001287715.1\|4082191_4083478_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|182273	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional.	0
NZ_CP049101.1\|WP_000787104.1\|4085727_4087242_+\|L-carnitine/gamma-butyrobetaine-antiport-BCCT-transporter	gnl\|CDD\|179568	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter.	0
NZ_CP049101.1\|WP_000122882.1\|4092286_4092877_+\|carnitine-operon-protein-CaiE	gnl\|CDD\|184189	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional.	4.35289e-143
NZ_CP049101.1\|WP_000125566.1\|4077034_4077268_-\|antitoxin	gnl\|CDD\|227619	COG5302, COG5302, Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only].	2.77856e-23
NZ_CP049101.1\|WP_001523933.1\|4078024_4079887_-\|glutathione-regulated-potassium-efflux-system-protein-KefC	gnl\|CDD\|235131	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional.	0
NZ_CP049101.1\|WP_001523925.1\|4096890_4098039_-\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	gnl\|CDD\|237139	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit.	0
NZ_CP049101.1\|WP_000624375.1\|4077353_4077833_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.07206e-127
NZ_CP049101.1\|WP_001523930.1\|4084484_4085255_-\|electron-transfer-flavoprotein-FixA	gnl\|CDD\|179569	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed.	8.26121e-169
NZ_CP049101.1\|WP_000347117.1\|4087272_4088415_+\|crotonobetainyl-CoA-dehydrogenase	gnl\|CDD\|179566	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated.	0

>NZ_CP049101.1|WP_001523930.1|4084484_4085255_-|electron-transfer-flavoprotein-FixA
MKIITCYKCVPDEQDIAVNNADGSLDFSKADAKISQYDLNAIEAACQLKQQAAEAQVTALSVGAKALTNAKGRKDVLSRGPDELIVVIDDQFEQALPQQTASVLAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAVNGVSKIISLTADTLTVERELEDETETLSIPLPAVVAVSTDINSPQIPSMKAILGAAKKPVQVWSAADIGFNAEAAWSEQQVAAPKQRERQRIVIEGDGEEQIAAFAENLRKVI
>NZ_CP049101.1|WP_001091518.1|4083528_4084470_-|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNTFSQVWVFSDTPSRLPELMNGAQALANQINTFVLNDADGAQAIQLGANHVWKLSGKPNDRMIEDYAGVMADTIRQHGADGLVLLPNTRRGKLLAAKLGYRLNAAVSNDASAVSVQDGKATVKHMVYGGLAIGEERIATPYAVLTISSGTFDAAQPDASRTGETHTVEWQAPAVAITRTATQARQSNSVDLDKARLVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEHERYVGISNLMLKPELYLAVGISGQIQHMVGANASQTIFAINKDKNAPIFQYADYGIVGDAVKILPALTAALAR
>NZ_CP049101.1|WP_001287715.1|4082191_4083478_-|FAD-dependent-oxidoreductase
MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNSILAEKLGMAKRVKPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTDGLMGGGFLYTNENTLSLGLVCGLHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQHLESGPLRDMRMYQKLPAFLDNPRMFSGYPELAVGVARDLFTIDGSAPELMRKKILRHGKKVGFINLIKDGMKGVTVL
>NZ_CP049101.1|WP_000203741.1|4081907_4082195_-|ferredoxin-like-protein-FixX
MTSPVNVDVKLGVNKFNVDEEHPHIVVKADADKQALELLVKACPAGLYKKQDDGSVRFDYAGCLECGTCRILGLGSALEQWEYPRGTFGVEFRYG
>NZ_CP049101.1|WP_001523932.1|4080517_4081849_-|MFS-transporter
MQPSRNFDDLKFSSIHRRILLWGSGGPFLDGYVLVMIGVALEQLTPALKLDADWIGLLGAGTLAGLFVGTSLFGYISDKVGRRKMFLIDIIAIGVISVATMFVSSPVELLVMRVLIGIVIGADYPIATSMITEFSSTRQRAFSISFIAAMWYVGATCADLVGYWLYDVEGGWRWMLGSAAIPCLLILIGRFELPESPRWLLRKGRVKECEEMMIKLFGEPVAFEEEQPQQTRFRDLFNRRHFPFVLFVAAIWTCQVIPMFAIYTFGPQIVGLLGLGVGKNAALGNVVISLFFMLGCIPPMLWLNTAGRRPLLIGSFAMMTLALAVLGLIPDMGIWLVVMAFAVYAFFSGGPGNLQWLYPNELFPTDIRASAVGVIMSLSRIGTIVSTWALPIFINNYGISNTMLMGAGISLFGLLISVAFAPETRGMSLAQTSNMTIRGQRTG
>NZ_CP049101.1|WP_000600732.1|4079879_4080410_-|glutathione-regulated-potassium-efflux-system-oxidoreductase-KefF
MILIIYAHPYPHHSHANKRMLEQARTLEGVEIRSLYQLYPDFNIDIAAEQEALSRADLIVWQHPMQWYSIPPLLKLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGTHPGFDVLSQPLQATAIYCGLNWLPPFAMHCTFICDDETLEGQARHYKQRLLEWQEAHHG
>NZ_CP049101.1|WP_001523933.1|4078024_4079887_-|glutathione-regulated-potassium-efflux-system-protein-KefC
MDSHTLIQALIYLGSAALIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDAESILHFAEIGVVLMLFIIGLELDPQRLWKLRAAVFGGGALQMVICGGLLGLFCMLLGLRWQVAELIGMTLALSSTAIAMQAMNERNLMVTQMGRSAFAVLLFQDIAAIPLVAMIPLLAASSASTTMGAFVLSALKVAGALVLVVLLGRYVTRPALRFVARSGLREVFSAVALFLVFGFGLLLEEVGLSMAMGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIGVGMSIDFGTLIEKPLRIVILLLGFLIIKIAMLWLIARPLQVPNKQRRWFAVLLGQGSEFAFVVFGAAQMANVLEPEWAKSLTLAVALSMAATPILLVILNRLEQSSTEEAREADEIDEEQPRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNLQLTEMVKEHFPHLQIIARARDVDHYIRLRQAGVEKPERETFEGALKTGRLALESLGLGPYEARERADVFRRFNIQMVEEMAMVENDTKARAAVYKRTSAMLSEIITEDREHLSLIQRHGWQGTEEGKHTGNMADEPETKPSS
>NZ_CP049101.1|WP_000624375.1|4077353_4077833_-|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVIMGRHTWESIGRPLPGRKNIILSSQPGTDDRVTWVKSVDEAIAACGDVPEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSEFHDADAQNSHSYCFEILERR
>NZ_CP049101.1|WP_000125566.1|4077034_4077268_-|antitoxin
MTAKRTTQSVTVTVDRELVNRARDAGLNMSATLTVALNAELKKHAATRWREENAEAIAALNQLADETGCFSDEYRSF
>NZ_CP049101.1|WP_001160966.1|4076717_4077032_-|CcdB-family-protein
MQFTVYRSRGRNAAFPFVIDVTSDIIGEINRRIVIPLTPIERFSRIRPPERLNPILLLVDGKEYVLMTHETATVPVNALGTKFCDASAHRTLIKGALDFMLDGI
>NZ_CP049101.1|WP_000787104.1|4085727_4087242_+|L-carnitine/gamma-butyrobetaine-antiport-BCCT-transporter
MKNEKRKTGIEPKVFFPPLIIVGILCWLTVRDLDAANVVINAVFSYVTNVWGWAFEWYMVVMLFGWFWLVFGPYAKKRLGNEPPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISTPPFGLEPNSTGAKELGLAYSLFHWGPLPWATYSFLSVAFAYFFFVRKMEVIRPSSTLVPLVGEKHAKGLFGTIVDNFYLVALIFAMGTSLGLATPLVTECMQWLFGIPHTLQLDAIIITCWIILNAICVACGLQKGVRIASDVRSYLSFLMLGWVFIVSGASFIMNYFTDSVGMLLMYLPRMLFYTDPIAKGGFPQGWTVFYWAWWVIYAIQMSIFLARISRGRTVRELCFGMVLGLTASTWILWTVLGSNTLLLIDKNIINIPNLIEQYGVARAIIETWAALPLSTATMWGFFILCFIATVTLVNACSYTLAMSTCREVRDGEEPPLLVRIGWSVLVGIIGIVLLALGGLKPIQTAIIAGGCPLFFVNIMVTLSFIKDAKQNWKD
>NZ_CP049101.1|WP_000347117.1|4087272_4088415_+|crotonobetainyl-CoA-dehydrogenase
MDFNLNDEQELFVAGIRELMASENWEAYFAECDRDSVYPERFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGRLGAPTYVLYQLPGGFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKIYLNGSKCFITSSAYTPYIVVMARDGASPDKPVYTEWFVDMSKPGIKVTKLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQYR
>NZ_CP049101.1|WP_000349942.1|4088543_4089761_+|L-carnitine-CoA-transferase
MDHLPMPKFGPLAGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALSLNIFKDEGREAFLKLMETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIAHLSGFGQYGTEEYTNLPAYNTIAQAFSGYLIQNGDVDQPMPAFPYTADYFSGLTATTAALAALHKVRETGKGESIDIAMYEVMLRMGQYFMMDYFNGGEMCPRMTKGKDPYYAGCGLYKCADGYIVMELVGITQIAECFKDIGLAHLLGTPEIPEGTQLIHRIECPYGPLVEEKLDAWLAAHTIAEVKERFAELNIACAKVLTVPELESNPQYVARESITQWQTMDGRTCKGPNIMPKFKNNPGQIWRGMPSHGMDTAAILKNIGYSENDIQELVSKGLAKVED
>NZ_CP049101.1|WP_001523929.1|4089833_4091387_+|crotonobetaine/carnitine-CoA-ligase
MDIIGGQHLRQMWDDLADVYGHKTALICESSSGVVNRYSYLELNQEINRTANLFYTLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESTWILQNSQACLLVTSAQFYPMYQQIQQEDASQLRHICLTDMALPADDGVSSFTQLKNQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLAEKYSARAFWGQVQKYRATITECIPMMIRTLMVQPPSANDRQHRLREVMFYLNLSEQEKDAFCERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRAGFCYEAEIRDDHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK
>NZ_CP049101.1|WP_000004399.1|4091495_4092281_+|crotonobetainyl-CoA-hydratase
MSESLHLTRNGSILEITLDRPKANAIDAKTSFEMGEVFLNFRDDPQLRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFNLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKILPPAIVNEMVMTGRRMGAEEALRWGVVNRVVSQAELMDNARELAQQLVNSAPLAIAALKEIYRTTSEMPVEEAYRYIRSGVLKHYPSVLHSEDAIEGPLAFAEKRDPVWKGR
>NZ_CP049101.1|WP_000122882.1|4092286_4092877_+|carnitine-operon-protein-CaiE
MSYYAFEGLIPVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEENRPRLQGTTDVTPKR
>NZ_CP049101.1|WP_000333124.1|4092995_4093391_-|carnitine-metabolism-transcriptional-regulator-CaiF
MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCEVKMIPNKLEGRGCQCQRLVKVVDIDEQIYARLRNNSRDKLVGVRKTPRIPAVPLTELNREQKWQMMLSKSMRR
>NZ_CP049101.1|WP_000196510.1|4093425_4093644_+|hypothetical-protein
MTRFAAIKQGHIKIVDISIVCNFTVDKCELNPAYVIKNIDSPKDLLNGQKKRSSSENRISYLIKLADEKYPP
>NZ_CP049101.1|WP_001126341.1|4093651_4096873_-|carbamoyl-phosphate-synthase-large-subunit
MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHSMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPEALTKIRRELKDAGAERIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVGITGLNAEFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEECEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTTIEMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIPPYYSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGRRAIEDSRVIRRSALQYKVHYDTTLNGGFATAMALNADATEKVISVQEMHAQIK
>NZ_CP049101.1|WP_001523925.1|4096890_4098039_-|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit
MIKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEPYSWTQGSWTLTGGLPEAKKEDELPYHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVKDVVKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEASPGPHDAAPLFDHFIALIEQYRKTAK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP049101_2	2.1\|3073914\|40\|NZ_CP049101\|CRISPRCasFinder	3073914-3073953	40	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	47951-47990	1	0.975
NZ_CP049101_4	4.1\|4085363\|42\|NZ_CP049101\|PILER-CR	4085363-4085404	42	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	141085-141126	1	0.976
NZ_CP049101_4	4.2\|4085422\|40\|NZ_CP049101\|PILER-CR	4085422-4085461	40	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	141028-141067	1	0.975
NZ_CP049101_1	1.1\|2419517\|38\|NZ_CP049101\|CRISPRCasFinder	2419517-2419554	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
NZ_CP049101_4	4.2\|4085422\|40\|NZ_CP049101\|PILER-CR	4085422-4085461	40	NZ_CP034685	Bacillus sp. BD59S plasmid pBTBD59S2, complete sequence	143235-143274	11	0.725

1. spacer 2.1|3073914|40|NZ_CP049101|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 1, identity: 0.975

gcgctgcgggtcatttttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
***************.************************

2. spacer 4.1|4085363|42|NZ_CP049101|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 1, identity: 0.976

tgtcacacgcagataaatccaactttcaatattgttaagctc	CRISPR spacer
tgtcacacgcagataaatccaactttcaatattgttaagttc	Protospacer
***************************************.**

3. spacer 4.2|4085422|40|NZ_CP049101|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 1, identity: 0.975

catggcgtagaaaaaagaaattttcaatattgttttatgg	CRISPR spacer
catggcgtagaaaaaagaaattttcaatattgctttatgg	Protospacer
********************************.*******

4. spacer 1.1|2419517|38|NZ_CP049101|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

5. spacer 4.2|4085422|40|NZ_CP049101|PILER-CR matches to NZ_CP034685 (Bacillus sp. BD59S plasmid pBTBD59S2, complete sequence) position: , mismatch: 11, identity: 0.725

catggcgtagaaaaaagaaattttcaatattgttttatgg-	CRISPR spacer
aacacaatagaaaaaagaaattttcaaccttg-tttatact	Protospacer
 *..  .********************. *** *****.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

76643 : 95484

Morganella_phage(30.77%)

integrase

attL 80805:80821|attR 100951:100967

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000230718.1\|76643_77087_+	hypothetical protein	A0A1W6JPI4	Morganella_phage	4.8e-45	66.4
WP_000204054.1\|77103_77481_-	hypothetical protein	NA	NA	NA	NA
WP_000072645.1\|77484_77967_-	ImmA/IrrE family metallo-endopeptidase	A0A142KB62	Gordonia_phage	1.5e-28	43.9
WP_000594596.1\|78939_79638_-	hypothetical protein	NA	NA	NA	NA
WP_016231879.1\|79788_82509_-	lytic transglycosylase domain-containing protein	A5VW64	Enterobacteria_phage	7.5e-149	60.9
80805:80821	attL	NA	NA	NA	NA
WP_072643837.1\|82505_83825_-	phage DNA ejection protein	B6SCW4	Bacteriophage	1.6e-35	43.2
WP_000909176.1\|83824_84502_-	hypothetical protein	Q2A0B2	Sodalis_phage	7.0e-56	71.6
WP_000420674.1\|84495_84957_-	DUF2824 family protein	Q2A0B3	Sodalis_phage	2.9e-61	72.2
WP_001018524.1\|84973_85135_-	hypothetical protein	NA	NA	NA	NA
WP_001555747.1\|85719_88476_-	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	3.4e-298	57.0
WP_001208878.1\|88462_88834_-	hypothetical protein	NA	NA	NA	NA
WP_000628967.1\|88826_89168_-	hypothetical protein	A0A1B5FPL8	Escherichia_phage	2.5e-33	61.5
WP_042196814.1\|89178_89781_-	hypothetical protein	A0A286S1S7	Klebsiella_phage	8.8e-26	36.8
WP_164699319.1\|89773_89995_-	hypothetical protein	NA	NA	NA	NA
WP_001024675.1\|89991_90255_-	hypothetical protein	NA	NA	NA	NA
WP_001065738.1\|90251_90446_-	hypothetical protein	NA	NA	NA	NA
WP_001399727.1\|90438_91506_-	ash family protein	A0A1C9IHV9	Salmonella_phage	8.9e-13	36.8
WP_033554327.1\|91499_91682_-	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_072643836.1\|91674_92508_-	antA/AntB antirepressor family protein	G9L6G1	Escherichia_phage	9.0e-21	46.7
WP_000412532.1\|92520_92952_-	hypothetical protein	A0A1W6JPH9	Morganella_phage	1.8e-28	50.3
WP_001018038.1\|92951_93155_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_063101851.1\|93261_94212_-	hypothetical protein	NA	NA	NA	NA
WP_028120363.1\|94230_95484_-\|integrase	site-specific integrase	A0A1W6JPG6	Morganella_phage	3.9e-193	78.1
100951:100967	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1171624 : 1180374

Escherichia_phage(71.43%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001279001.1\|1171624_1172263_-	aldolase	A0A077SK32	Escherichia_phage	2.8e-83	75.0
WP_000590411.1\|1172259_1173522_-	3-oxo-tetronate kinase	A0A077SLJ7	Escherichia_phage	2.2e-135	61.4
WP_000847997.1\|1173518_1174427_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	1.5e-117	76.5
WP_001296319.1\|1174622_1175390_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	9.7e-70	57.4
WP_001141293.1\|1175440_1176097_-	protein-serine/threonine phosphatase	A0A077SLQ6	Escherichia_phage	3.3e-50	46.1
WP_164699436.1\|1176202_1178770_-	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	3.5e-31	20.7
WP_001525479.1\|1178916_1180374_+	hypothetical protein	A0A0R6PGY7	Moraxella_phage	5.8e-23	28.1

DBSCAN-SWA_3

1520197 : 1574874

Enterobacteria_phage(54.69%)

lysis,terminase,capsid,integrase,portal,holin,tail,head

attL 1532026:1532047|attR 1573785:1573806

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001224626.1\|1520197_1520767_-\|integrase	tyrosine-type recombinase/integrase	A0A2L1IV36	Escherichia_phage	7.0e-49	52.2
WP_001181153.1\|1521516_1522146_+\|integrase	tyrosine-type recombinase/integrase	A0A2L1IV36	Escherichia_phage	2.4e-119	99.5
WP_001525246.1\|1522464_1523085_+	LuxR family transcriptional regulator	A0A2L1IV08	Escherichia_phage	1.6e-118	99.0
WP_001525245.1\|1523109_1531017_+	autotransporter outer membrane beta-barrel domain-containing protein	A0A2L1IV38	Escherichia_phage	0.0e+00	94.3
WP_001525244.1\|1531064_1531595_+	OmpH family outer membrane protein	A0A2L1IV11	Escherichia_phage	3.3e-85	97.7
1532026:1532047	attL	NA	NA	NA	NA
WP_001163428.1\|1532120_1532321_-	response regulator inhibitor TorI	K7P7V0	Enterobacteria_phage	2.4e-33	100.0
WP_000545733.1\|1532378_1532546_-	hypothetical protein	A0A0K2FJ46	Enterobacteria_phage	1.3e-27	100.0
WP_001525242.1\|1532618_1532903_-	ASCH domain-containing protein	A5VWB6	Enterobacteria_phage	1.2e-49	98.9
WP_000253289.1\|1532895_1533180_-	DUF4752 family protein	A5VWB4	Enterobacteria_phage	3.8e-48	100.0
WP_164699343.1\|1534825_1534993_-	DUF2737 family protein	K7PJY9	Enterobacterial_phage	6.6e-24	96.4
WP_000753555.1\|1535009_1535324_-	hypothetical protein	K7PLT4	Enterobacteria_phage	1.2e-50	100.0
WP_000041326.1\|1535335_1535818_-	siphovirus Gp157 family protein	K7P6T5	Enterobacteria_phage	3.5e-78	96.9
WP_032174196.1\|1535801_1536713_-	DNA recombinase	K7PKG9	Enterobacteria_phage	1.7e-169	99.7
WP_000604110.1\|1536709_1537018_-	hypothetical protein	K7PJM4	Enterobacteria_phage	3.3e-53	99.0
WP_001243355.1\|1537102_1537255_-	host cell division inhibitory peptide Kil	A5VWA5	Enterobacteria_phage	4.7e-21	100.0
WP_000972063.1\|1537239_1537374_-	hypothetical protein	K7PHK2	Enterobacteria_phage	3.1e-16	100.0
WP_164699438.1\|1537457_1537874_-	hypothetical protein	A0A0U2DAF7	Escherichia_phage	3.4e-53	66.4
WP_164699440.1\|1538007_1538208_-	hypothetical protein	A0A088CQ77	Enterobacteria_phage	4.0e-28	98.5
WP_164699316.1\|1538207_1538459_-	hypothetical protein	A0A088CPT8	Enterobacteria_phage	3.8e-39	92.8
WP_001525230.1\|1538548_1538812_-	hypothetical protein	NA	NA	NA	NA
WP_096106239.1\|1538820_1539207_-	antitermination protein	A4KWR0	Enterobacteria_phage	2.4e-53	100.0
WP_024220799.1\|1539653_1540526_-	hypothetical protein	I6NRL3	Burkholderia_virus	7.7e-23	28.4
WP_001274760.1\|1540557_1541271_-	LexA family transcriptional regulator	A4KWV9	Enterobacteria_phage	1.8e-131	100.0
WP_164699344.1\|1541371_1541572_+	hypothetical protein	A4KWT7	Enterobacteria_phage	1.3e-29	98.5
WP_000251073.1\|1541690_1541984_+	hypothetical protein	K7P6Y2	Enterobacteria_phage	2.8e-46	100.0
WP_000166961.1\|1542016_1542178_+	hypothetical protein	Q76H53	Enterobacteria_phage	1.3e-21	100.0
WP_001608293.1\|1542164_1542986_+	replication protein	K7PJZ3	Enterobacterial_phage	2.0e-153	99.6
WP_001525220.1\|1542982_1544359_+	AAA family ATPase	A0A0P0ZC27	Stx2-converting_phage	8.2e-253	99.3
WP_000736904.1\|1544432_1544873_+	recombination protein NinB	A5VW91	Enterobacteria_phage	7.0e-81	100.0
WP_024186921.1\|1544869_1545052_+	NinE family protein	A0A0N7C1X3	Escherichia_phage	2.2e-28	98.3
WP_000566998.1\|1545048_1545219_+	protein ninF	A0A2I6PIG4	Escherichia_phage	7.2e-26	100.0
WP_001003984.1\|1545211_1545934_+	DNA-binding protein	K7P7L0	Enterobacteria_phage	7.1e-131	99.6
WP_000002243.1\|1545933_1546224_+	DUF1364 domain-containing protein	K7PKV0	Enterobacteria_phage	3.4e-52	100.0
WP_001008199.1\|1546220_1546583_+	RusA family crossover junction endodeoxyribonuclease	A5VW85	Enterobacteria_phage	9.2e-63	100.0
WP_000994516.1\|1546579_1546768_+	protein ninH	A5VW84	Enterobacteria_phage	5.5e-27	100.0
WP_000027549.1\|1546764_1547283_+	DUF1133 family protein	A5VW83	Enterobacteria_phage	9.0e-96	100.0
WP_000783734.1\|1547879_1548203_+\|holin	phage holin, lambda family	G5DA93	Enterobacteria_phage	1.3e-52	100.0
WP_164699345.1\|1548186_1548663_+	glycoside hydrolase family protein	A5VW81	Enterobacteria_phage	6.4e-88	99.4
WP_164699346.1\|1548659_1549097_+\|lysis	lysis protein	K7P7F7	Enterobacteria_phage	5.1e-68	94.5
WP_001139680.1\|1549084_1549237_+	hypothetical protein	K7PKL2	Enterobacteria_phage	1.2e-21	100.0
WP_001028468.1\|1549438_1549960_+	DNA-binding protein	H6WRZ8	Salmonella_phage	7.2e-101	99.4
WP_000807788.1\|1550319_1550562_+	DUF2560 family protein	A5VW77	Enterobacteria_phage	1.3e-36	100.0
WP_000179910.1\|1550641_1551067_+	hypothetical protein	Q716H4	Shigella_phage	1.8e-65	87.9
WP_112864989.1\|1551063_1552476_+\|terminase	PBSX family phage terminase large subunit	Q716H3	Shigella_phage	5.8e-278	99.8
WP_164699347.1\|1552478_1554605_+\|portal	portal protein	Q9AYZ9	Salmonella_phage	0.0e+00	99.4
WP_164699348.1\|1554618_1555503_+\|capsid	phage capsid protein	Q716H1	Shigella_phage	2.0e-143	99.3
WP_164699349.1\|1555514_1556786_+\|head	head protein	Q716H0	Shigella_phage	1.6e-239	99.3
WP_137500155.1\|1556828_1557014_+	hypothetical protein	Q716G9	Shigella_phage	3.0e-25	96.7
WP_000246750.1\|1556988_1557471_+	packaged DNA stabilization protein p27	Q716G8	Shigella_phage	3.8e-88	100.0
WP_164699350.1\|1557479_1558898_+	hypothetical protein	A5VW69	Enterobacteria_phage	3.3e-273	98.3
WP_089659741.1\|1558897_1559599_+\|tail	phage tail protein	A0A2D1GLK3	Escherichia_phage	1.1e-117	97.9
WP_164699351.1\|1559598_1560054_+	DUF2824 family protein	A5VW67	Enterobacteria_phage	3.1e-84	97.4
WP_164699352.1\|1560056_1560752_+	DNA transfer protein	A0A2H4FUQ9	Salmonella_phage	1.4e-115	97.8
WP_164699353.1\|1560762_1562112_+	phage DNA ejection protein	Q9AYZ0	Salmonella_phage	7.3e-246	98.9
WP_164699354.1\|1562111_1564280_+	DNA transfer protein	Q9AYY9	Salmonella_phage	0.0e+00	92.8
WP_000895335.1\|1564280_1564610_-	hypothetical protein	Q9AYY8	Salmonella_phage	1.7e-52	99.1
WP_000136767.1\|1564766_1565735_+	hypothetical protein	A9YX09	Burkholderia_phage	8.5e-71	48.6
WP_071653511.1\|1566126_1566312_+	hypothetical protein	I6RSG3	Salmonella_phage	4.3e-08	96.7
WP_001036008.1\|1566286_1566496_-	hypothetical protein	I6R975	Salmonella_phage	1.7e-29	97.1
WP_001283827.1\|1566492_1566744_-	Arc family DNA-binding protein	A5VW59	Enterobacteria_phage	1.2e-34	95.1
WP_000865491.1\|1566849_1566990_+	Arc family DNA-binding protein	A0A0M4S6R9	Salmonella_phage	5.7e-05	59.1
WP_097451082.1\|1567088_1568012_+	phage antirepressor Ant	A5VW58	Enterobacteria_phage	4.6e-175	98.4
WP_164699355.1\|1568112_1571058_+	peptidase S74	A5VW57	Enterobacteria_phage	0.0e+00	99.0
WP_000958692.1\|1572472_1573630_-\|integrase	prophage integrase IntS	A5VW56	Enterobacteria_phage	1.4e-221	99.5
WP_001525186.1\|1573941_1574874_-	formate/nitrite transporter family protein	E7DYY8	Enterobacteria_phage	1.0e-166	99.0
1573785:1573806	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1812886 : 1822329

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000569347.1\|1812886_1813813_+	glycine betaine ABC transporter ATP binding protein YehX	F2Y1V5	Organic_Lake_phycodnavirus	2.6e-08	26.8
WP_000783109.1\|1813817_1814549_+	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_001216963.1\|1814529_1814637_-	protein YohO	NA	NA	NA	NA
WP_001240408.1\|1814696_1815428_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	6.3e-111	98.5
WP_001295431.1\|1815649_1817335_+	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
WP_000598641.1\|1817331_1818051_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_045133108.1\|1818097_1818568_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.5e-81	98.7
WP_001296231.1\|1818608_1819070_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	3.2e-76	99.3
WP_045133107.1\|1819189_1821196_-	hypothetical protein	Q9EYF6	Enterobacteria_phage	0.0e+00	95.2
WP_001525033.1\|1821192_1822329_-	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	1.9e-162	97.4

DBSCAN-SWA_5

2140210 : 2225622

Escherichia_phage(28.21%)

tRNA,terminase,capsid,integrase,plate,holin,tail

attL 2137757:2137772|attR 2210308:2210323

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2137757:2137772	attL	NA	NA	NA	NA
WP_001531780.1\|2140210_2141227_-\|integrase	tyrosine-type recombinase/integrase	H9C152	Pectobacterium_phage	1.1e-126	63.6
WP_097478861.1\|2141195_2141459_-	DUF4224 domain-containing protein	H9C153	Pectobacterium_phage	4.0e-07	38.0
WP_000916333.1\|2141668_2141851_-	hypothetical protein	NA	NA	NA	NA
WP_021560871.1\|2141850_2142420_-	siphovirus Gp157 family protein	H9C156	Pectobacterium_phage	3.6e-37	50.3
WP_097478862.1\|2142416_2144633_-	hypothetical protein	H9C157	Pectobacterium_phage	1.4e-100	35.8
WP_097478863.1\|2144663_2144993_-	hypothetical protein	NA	NA	NA	NA
WP_001296165.1\|2145989_2146403_-	helix-turn-helix domain-containing protein	A0A1B5FPF4	Escherichia_phage	8.7e-09	49.1
WP_000360804.1\|2146501_2146732_+	transcriptional regulator	H6WRX5	Salmonella_phage	1.5e-21	63.2
WP_097478864.1\|2146790_2147267_+	hypothetical protein	H9C162	Pectobacterium_phage	1.9e-23	48.6
WP_097478865.1\|2147306_2147531_+	hypothetical protein	H9C163	Pectobacterium_phage	1.0e-16	54.1
WP_097478866.1\|2147527_2148538_+	replication protein RepO	A0A067ZIA1	Vibrio_phage	8.4e-29	46.7
WP_097478867.1\|2148534_2149926_+	replicative DNA helicase	I6R0N4	Salmonella_phage	2.4e-103	45.9
WP_097478868.1\|2149964_2150375_+	hypothetical protein	NA	NA	NA	NA
WP_064226336.1\|2150376_2150613_+	hypothetical protein	NA	NA	NA	NA
WP_033814619.1\|2150609_2150921_+	DNA-binding protein	A0A222YXX1	Escherichia_phage	4.1e-35	66.7
WP_059270170.1\|2150917_2151142_+	hypothetical protein	NA	NA	NA	NA
WP_000466605.1\|2151329_2151551_+	hypothetical protein	NA	NA	NA	NA
WP_097478869.1\|2151823_2152618_+	ORF6N domain-containing protein	A0A2R2Z302	Escherichia_phage	2.6e-41	68.3
WP_001559334.1\|2152997_2153693_+	hypothetical protein	NA	NA	NA	NA
WP_097755779.1\|2153693_2154359_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_097478789.1\|2154686_2155586_-	SMEK domain-containing protein	NA	NA	NA	NA
WP_097478788.1\|2156119_2157472_+	hypothetical protein	NA	NA	NA	NA
WP_097478787.1\|2158201_2158750_+	hypothetical protein	NA	NA	NA	NA
WP_097478786.1\|2159361_2160042_+	hypothetical protein	NA	NA	NA	NA
WP_000536919.1\|2160203_2160437_-	hypothetical protein	NA	NA	NA	NA
WP_097478785.1\|2160680_2161322_+	hypothetical protein	NA	NA	NA	NA
WP_001025459.1\|2161473_2161653_+	hypothetical protein	NA	NA	NA	NA
WP_000057009.1\|2161730_2162327_+	DUF1367 family protein	H9C173	Pectobacterium_phage	3.0e-71	64.6
WP_021560852.1\|2162323_2162617_+	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	6.6e-35	71.6
WP_097478784.1\|2162616_2163288_+	antitermination protein	Q7Y3X2	Yersinia_phage	3.5e-15	31.9
WP_001294589.1\|2163400_2163784_+	hypothetical protein	NA	NA	NA	NA
WP_000172496.1\|2163783_2164056_+\|holin	phage holin family protein	A0A0A0YPY6	Escherichia_phage	9.8e-09	42.9
WP_000131873.1\|2164055_2164535_+	TIGR02594 family protein	A0A222YWL8	Escherichia_phage	4.6e-62	68.8
WP_000734931.1\|2164542_2164737_+	hypothetical protein	NA	NA	NA	NA
WP_001531775.1\|2164796_2165042_-	hypothetical protein	NA	NA	NA	NA
WP_021560849.1\|2165410_2165977_+	hypothetical protein	A0A1I9KFT4	Aeromonas_phage	3.5e-32	44.0
WP_021560848.1\|2165963_2167826_+\|terminase	phage terminase large subunit family protein	A0A1I9KF19	Aeromonas_phage	3.7e-192	53.4
WP_000203897.1\|2167825_2168059_+	hypothetical protein	NA	NA	NA	NA
WP_033548729.1\|2169629_2170937_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	1.4e-105	53.4
WP_000206292.1\|2170936_2171266_+	hypothetical protein	A0A2R9YJN3	Escherichia_phage	2.0e-08	39.5
WP_001283997.1\|2171324_2172359_+\|capsid	major capsid protein	A0A2I6TCE5	Escherichia_phage	6.6e-106	56.5
WP_097478783.1\|2172393_2172813_+	DNA-packaging protein	NA	NA	NA	NA
WP_001531773.1\|2172809_2173190_+	hypothetical protein	NA	NA	NA	NA
WP_000774516.1\|2173221_2173902_+	hypothetical protein	NA	NA	NA	NA
WP_000015612.1\|2173898_2174435_+	hypothetical protein	NA	NA	NA	NA
WP_021560844.1\|2174415_2175318_+\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_024230605.1\|2175320_2175662_+\|plate	baseplate assembly protein	D4HTV2	Vibrio_phage	1.2e-19	50.5
WP_021560842.1\|2175658_2176579_+	hypothetical protein	D5LGZ3	Escherichia_phage	4.9e-68	48.1
WP_021560841.1\|2176581_2177208_+\|tail	phage tail protein I	A0A193GYD1	Enterobacter_phage	3.5e-25	43.0
WP_164699368.1\|2177200_2178412_+\|tail	phage tail protein	J9QDX3	Clostridium_phage	4.8e-15	35.5
WP_000626358.1\|2178411_2178801_+	hypothetical protein	A0A2H4EXG4	Aeromonas_phage	9.4e-05	30.8
WP_097478780.1\|2178797_2180300_+\|tail	phage tail protein	R9TMQ0	Vibrio_phage	2.7e-68	34.5
WP_021560838.1\|2180317_2180830_+\|tail	phage major tail tube protein	NA	NA	NA	NA
WP_000444667.1\|2180842_2181124_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_097478779.1\|2181232_2182873_+	hypothetical protein	A0A2I7R3J9	Vibrio_phage	1.2e-19	29.3
WP_001531768.1\|2182908_2183298_+\|tail	phage tail protein	E5FFG4	Burkholderia_phage	1.0e-14	37.9
WP_001531767.1\|2183458_2183683_+	hypothetical protein	NA	NA	NA	NA
WP_097478778.1\|2183686_2184730_+	late control protein	R9TNM7	Vibrio_phage	1.5e-33	28.5
WP_001296152.1\|2184896_2185316_+	hypothetical protein	G8C7Q7	Escherichia_phage	1.8e-49	68.8
WP_000847877.1\|2185787_2186453_+	UPF0149 family protein YecA	NA	NA	NA	NA
WP_045133236.1\|2186503_2187715_-	tyrosine transporter TyrP	NA	NA	NA	NA
WP_000377224.1\|2187905_2188145_+	YecH family protein	NA	NA	NA	NA
WP_000917208.1\|2188182_2188680_-	non-heme ferritin	NA	NA	NA	NA
WP_001524855.1\|2188851_2189175_-	hypothetical protein	NA	NA	NA	NA
WP_010723106.1\|2189438_2189525_+	stress response protein AzuC	NA	NA	NA	NA
WP_000082125.1\|2189639_2189891_+	DUF2766 domain-containing protein	NA	NA	NA	NA
WP_000179469.1\|2189968_2190472_-	non-heme ferritin-like protein	NA	NA	NA	NA
WP_000548680.1\|2191268_2192258_+	arabinose ABC transporter substrate-binding protein AraF	NA	NA	NA	NA
WP_001187785.1\|2192327_2193842_+	arabinose ABC transporter ATP binding protein AraG	A0A285PWH2	Cedratvirus	2.1e-12	29.2
WP_001527133.1\|2193856_2194843_+	arabinose ABC transporter permease AraH	NA	NA	NA	NA
WP_001527131.1\|2195009_2195810_+	trehalose-phosphatase	NA	NA	NA	NA
WP_001524853.1\|2195784_2197209_+	alpha,alpha-trehalose-phosphate synthase	NA	NA	NA	NA
WP_000122412.1\|2197215_2197644_-	universal stress protein UspC	NA	NA	NA	NA
WP_001295647.1\|2198423_2198774_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA
WP_001291603.1\|2198776_2199355_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA
WP_000906342.1\|2199481_2200369_+	flagellar motor stator protein MotA	NA	NA	NA	NA
WP_000795641.1\|2200365_2201292_+	flagellar motor protein MotB	NA	NA	NA	NA
WP_072254122.1\|2201296_2203261_+	chemotaxis protein CheA	NA	NA	NA	NA
WP_000147302.1\|2203281_2203785_+	chemotaxis protein CheW	NA	NA	NA	NA
WP_001524851.1\|2203929_2205591_+	methyl-accepting chemotaxis protein II	A0A2H4J162	uncultured_Caudovirales_phage	1.7e-10	40.3
WP_001524849.1\|2205881_2206742_+	protein-glutamate O-methyltransferase CheR	NA	NA	NA	NA
WP_000036385.1\|2206744_2207794_+	protein-glutamate methylesterase/protein glutamine deamidase	Q56AR1	Bacillus_thuringiensis_phage	1.0e-05	32.8
WP_000763867.1\|2207808_2208198_+	chemotaxis protein CheY	A0A2K9L4R0	Tupanvirus	1.3e-06	32.0
WP_000983609.1\|2208208_2208853_+	protein phosphatase CheZ	NA	NA	NA	NA
WP_001524846.1\|2209041_2210190_+	flagellar type III secretion system protein FlhB	NA	NA	NA	NA
WP_000066972.1\|2210182_2212261_+	flagellar biosynthesis protein FlhA	NA	NA	NA	NA
2210308:2210323	attR	NA	NA	NA	NA
WP_001202078.1\|2212260_2212653_+	flagellar protein FlhE	NA	NA	NA	NA
WP_001025322.1\|2212705_2214439_-\|tRNA	arginine--tRNA ligase	A0A2K9L6Z2	Tupanvirus	3.4e-86	33.5
WP_001304291.1\|2214654_2215221_+	VOC family protein	NA	NA	NA	NA
WP_001185734.1\|2215234_2215981_+	copper homeostasis protein CutC	NA	NA	NA	NA
WP_001524839.1\|2216368_2217469_+	cytochrome c-type protein TorY	NA	NA	NA	NA
WP_001527124.1\|2217493_2219923_+	trimethylamine N-oxide reductase TorZ	NA	NA	NA	NA
WP_000564725.1\|2219958_2220930_-\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
WP_045133239.1\|2220926_2221670_-	carboxy-S-adenosyl-L-methionine synthase CmoA	F5B419	Synechococcus_phage	1.7e-23	30.0
WP_000252980.1\|2221710_2222106_-	hypothetical protein	NA	NA	NA	NA
WP_001524835.1\|2222158_2222977_-	DUF72 domain-containing protein	Q859D1	Escherichia_coli_phage	6.5e-72	99.2
WP_000891625.1\|2222973_2223540_-	hydrolase	NA	NA	NA	NA
WP_001258676.1\|2223849_2225622_+\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA

DBSCAN-SWA_6

2644490 : 2690314

Enterobacteria_phage(55.26%)

lysis,capsid,terminase,integrase,tail,head

attL 2642414:2642429|attR 2688342:2688357

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2642414:2642429	attL	NA	NA	NA	NA
WP_001295593.1\|2644490_2644925_+	universal stress protein UspF	A0A1W6JNV4	Morganella_phage	1.4e-28	52.8
WP_120795384.1\|2647851_2647965_+	Rac prophage; protein YnaM	A0A1C9IHU6	Salmonella_phage	8.4e-07	80.6
WP_000836772.1\|2648033_2648267_+	cold shock protein YdfK	A0A192Y6D5	Salmonella_phage	4.1e-32	87.0
WP_000086519.1\|2648583_2649174_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	2.8e-24	38.8
WP_000885599.1\|2649271_2649847_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	9.1e-105	96.9
WP_071886609.1\|2649846_2653377_-	short-chain fatty acid transporter	X2KTY7	Enterobacteria_phage	2.5e-11	37.3
WP_001233133.1\|2653441_2654041_-	Ail/Lom family outer membrane beta-barrel protein	A5LH44	Enterobacteria_phage	1.6e-107	95.0
WP_032202219.1\|2654108_2657588_-	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	90.5
WP_000090943.1\|2657648_2658251_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	4.0e-87	84.7
WP_164699377.1\|2658187_2658931_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	6.1e-146	96.3
WP_001152660.1\|2658936_2659635_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	4.0e-131	97.8
WP_000847405.1\|2659634_2659964_-\|tail	phage tail protein	A0A2R9YJM0	Escherichia_phage	5.4e-54	94.5
WP_000840269.1\|2659960_2662522_-\|tail	phage tail tape measure protein	A0A0K2FI43	Enterobacteria_phage	0.0e+00	94.5
WP_000459474.1\|2662514_2662949_-\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	9.0e-57	90.0
WP_000479129.1\|2662930_2663353_-\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	2.7e-66	91.4
WP_001351266.1\|2663368_2664109_-\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	3.7e-127	95.9
WP_000683145.1\|2664116_2664512_-\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	1.3e-70	100.0
WP_000975062.1\|2664508_2665087_-\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	2.9e-79	99.0
WP_001204540.1\|2665098_2665452_-\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	3.4e-38	65.0
WP_000201530.1\|2665444_2665819_-	hypothetical protein	NA	NA	NA	NA
WP_000522649.1\|2665870_2666899_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.0e-114	61.6
WP_000256840.1\|2666956_2667304_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	2.0e-22	58.1
WP_001253996.1\|2667340_2668846_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	1.6e-100	54.0
WP_000140265.1\|2670424_2670706_-	hypothetical protein	NA	NA	NA	NA
WP_000835282.1\|2670717_2671260_-\|terminase	terminase	O64316	Escherichia_phage	3.4e-37	48.8
WP_001179424.1\|2671461_2671845_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_000190771.1\|2671856_2672198_-\|head	head decoration protein	NA	NA	NA	NA
WP_000228106.1\|2672207_2673248_-\|capsid	phage capsid protein	C6ZCY2	Enterobacteria_phage	3.0e-66	42.2
WP_000126640.1\|2673465_2673888_-	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_000161636.1\|2673884_2674136_-	hypothetical protein	NA	NA	NA	NA
WP_000761841.1\|2674483_2676238_-	DNA primase	Q7M2A8	Enterobacteria_phage	7.8e-91	40.1
WP_000425299.1\|2676234_2676534_-	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_001091146.1\|2676551_2676773_-	hypothetical protein	NA	NA	NA	NA
WP_001156310.1\|2676773_2676965_-	hypothetical protein	A0A286S1P8	Klebsiella_phage	1.1e-11	59.3
WP_000920679.1\|2676964_2677150_-	hypothetical protein	NA	NA	NA	NA
WP_001390072.1\|2677142_2677340_-	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
WP_000179580.1\|2677530_2677836_+	hypothetical protein	NA	NA	NA	NA
WP_001038675.1\|2678169_2678748_-	hypothetical protein	A0A1W6JPH8	Morganella_phage	9.2e-57	63.0
WP_029488835.1\|2678804_2679062_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_000963723.1\|2679063_2680305_-\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	9.1e-94	42.9
WP_000259002.1\|2681322_2681529_-\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	7.9e-11	56.9
WP_001304453.1\|2681512_2683441_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	3.3e-260	66.7
WP_000867568.1\|2683412_2683961_-\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	1.0e-57	84.2
WP_000881610.1\|2684523_2684706_-	hypothetical protein	NA	NA	NA	NA
WP_000830178.1\|2684912_2685239_-	TonB family protein	H6WZK5	Escherichia_phage	3.7e-39	72.2
WP_001298464.1\|2685719_2686013_+	increased serum survival lipoprotein Iss	K7PL54	Enterobacteria_phage	7.0e-45	92.8
WP_001228695.1\|2686103_2686286_-\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	2.9e-17	98.3
WP_001135310.1\|2686502_2687000_-	lysozyme RrrD	M1FJA0	Enterobacteria_phage	9.3e-90	96.4
WP_000839565.1\|2686999_2687215_-\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	1.3e-32	94.4
WP_001348108.1\|2687466_2687841_-	hypothetical protein	NA	NA	NA	NA
WP_000506936.1\|2688012_2688441_-	cell envelope integrity protein TolA	NA	NA	NA	NA
2688342:2688357	attR	NA	NA	NA	NA
WP_000640162.1\|2689484_2690027_-	DUF1133 family protein	A0A0U2S606	Escherichia_phage	4.9e-76	75.7
WP_000247763.1\|2690023_2690314_-	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	3.7e-46	87.5

DBSCAN-SWA_7

2697041 : 2715338

Escherichia_phage(64.71%)

tRNA,integrase

attL 2698378:2698391|attR 2712761:2712774

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001676522.1\|2697041_2699039_-	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	3.3e-21	26.2
2698378:2698391	attL	NA	NA	NA	NA
WP_001151151.1\|2699379_2699802_-	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	4.8e-63	88.5
WP_001262393.1\|2699842_2700913_-	hypothetical protein	A0A088CD36	Shigella_phage	4.2e-63	65.2
WP_164699378.1\|2700984_2701410_-	Rha family transcriptional regulator	NA	NA	NA	NA
WP_001072337.1\|2701406_2701661_-	hypothetical protein	A0A2I6PIE5	Escherichia_phage	2.8e-18	60.3
WP_000233320.1\|2701740_2702160_+	helix-turn-helix domain-containing protein	A0A2I6PIE7	Escherichia_phage	4.2e-19	47.5
WP_001169151.1\|2702591_2702747_+	YdaF family protein	M4QQ57	Salicola_phage	6.1e-08	55.3
WP_001312793.1\|2702743_2703232_-	superinfection exclusion protein B	NA	NA	NA	NA
WP_000560225.1\|2703673_2703895_+	killing protein KilR	A0A0U2RTC4	Escherichia_phage	4.9e-35	97.3
WP_001352098.1\|2703894_2704065_+	conserved protein, Rac prophage	A0A0U2SHB5	Escherichia_phage	3.6e-17	71.4
WP_164699379.1\|2704515_2707116_+	exodeoxyribonuclease VIII	A0A0U2I1R6	Escherichia_phage	2.6e-247	63.4
WP_000166319.1\|2707108_2707918_+	recombination protein RecT	A0A1P8DTF2	Proteus_phage	8.8e-106	71.5
WP_001317028.1\|2707974_2708169_+	type I toxin-antitoxin system endodeoxyribonuclease toxin RalR	A0A0U2QQP4	Escherichia_phage	5.8e-32	96.9
WP_000276809.1\|2708161_2708371_+	double-strand break reduction protein RcbA	A0A0U2QL97	Escherichia_phage	6.1e-27	98.4
WP_000079604.1\|2708449_2708665_+	excisionase XisR	A0A0U2RY08	Escherichia_phage	1.8e-37	100.0
WP_000040852.1\|2708666_2709902_+\|integrase	site-specific integrase	A0A0U2JGI6	Escherichia_phage	5.5e-240	98.8
WP_164699380.1\|2709953_2710889_+\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	3.8e-145	98.1
WP_001524640.1\|2711016_2712390_-	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	1.1e-52	33.1
WP_001296046.1\|2712419_2712593_-	hypothetical protein	NA	NA	NA	NA
WP_001524638.1\|2712867_2713851_-	zinc transporter ZntB	NA	NA	NA	NA
2712761:2712774	attR	NA	NA	NA	NA
WP_001524637.1\|2714105_2715338_+	diguanylate cyclase DgcM	A0A127AWB9	Bacillus_phage	3.1e-17	39.5

DBSCAN-SWA_8

2908238 : 2953137

Enterobacteria_phage(36.51%)

protease,tRNA,lysis,capsid,terminase,integrase,portal,plate,tail,head

attL 2906357:2906372|attR 2960488:2960503

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2906357:2906372	attL	NA	NA	NA	NA
WP_095501568.1\|2908238_2908430_-	isocitrate dehydrogenase	Q77Z09	Phage_21	4.4e-24	100.0
WP_001526918.1\|2909221_2911111_+	DUF262 domain-containing protein	NA	NA	NA	NA
WP_032145339.1\|2911144_2911372_-	recombinase family protein	A0A1S6L009	Salmonella_phage	1.9e-13	81.2
WP_001526916.1\|2911365_2911752_+	hypothetical protein	NA	NA	NA	NA
WP_001526915.1\|2911753_2912191_+\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	7.2e-46	66.9
WP_000639074.1\|2912162_2912558_-\|tail	tail fiber assembly protein	A0A0M4S6V4	Salmonella_phage	3.5e-15	43.5
WP_104209248.1\|2912566_2912974_-\|tail	phage tail protein	M1FN94	Enterobacteria_phage	8.3e-20	45.9
WP_001526913.1\|2913226_2913811_-	YmfQ family protein	O22003	Shigella_phage	3.2e-113	99.5
WP_023351662.1\|2913801_2914860_-\|plate	baseplate J/gp47 family protein	U5P424	Shigella_phage	6.2e-200	98.9
WP_000424732.1\|2914846_2915272_-	hypothetical protein	U5P0R9	Shigella_phage	2.3e-81	100.0
WP_001259088.1\|2915271_2915820_-\|plate	phage baseplate assembly protein	U5P081	Shigella_phage	3.3e-96	98.4
WP_045133318.1\|2915819_2916899_-\|plate	baseplate protein	U5P0H6	Shigella_phage	2.2e-205	99.4
WP_001526910.1\|2916895_2918224_-\|tail	phage tail/DNA circulation protein	Q8SBG8	Shigella_phage	2.5e-246	99.1
WP_045133317.1\|2918284_2920120_-\|tail	phage tail tape measure protein	S5FM63	Shigella_phage	1.2e-304	98.9
WP_001526907.1\|2920261_2920531_-\|tail	phage tail assembly protein	M1FPE4	Enterobacteria_phage	3.9e-42	98.9
WP_001526906.1\|2920530_2920887_-\|tail	phage tail protein	U5P076	Shigella_phage	9.0e-63	99.2
WP_001526905.1\|2920886_2922383_-\|tail	phage tail sheath protein	M1FN90	Enterobacteria_phage	1.4e-269	97.8
WP_000497751.1\|2922366_2922537_-	DUF2635 domain-containing protein	Q8SBH3	Shigella_phage	9.3e-26	100.0
WP_001526904.1\|2922545_2923106_-	hypothetical protein	Q8SBH4	Shigella_phage	2.0e-104	98.4
WP_001526903.1\|2923102_2923609_-	hypothetical protein	M1FPE2	Enterobacteria_phage	6.5e-91	99.4
WP_000702388.1\|2923583_2923994_-\|head	phage head closure protein	M1FJ87	Enterobacteria_phage	5.9e-74	97.8
WP_000927711.1\|2923990_2924314_-\|head,tail	phage gp6-like head-tail connector protein	U5P072	Shigella_phage	1.1e-56	99.1
WP_000601363.1\|2924316_2924517_-	hypothetical protein	S5FNU1	Shigella_phage	1.7e-26	98.5
WP_001526902.1\|2924566_2925772_-\|capsid	phage major capsid protein	U5P0G9	Shigella_phage	1.2e-223	99.3
WP_001193631.1\|2925786_2926437_-\|head,protease	HK97 family phage prohead protease	U5P4H2	Shigella_phage	2.5e-119	100.0
WP_001526901.1\|2926414_2927656_-\|portal	phage portal protein	U5P411	Shigella_phage	7.6e-242	99.5
WP_000605606.1\|2927655_2927838_-	hypothetical protein	S5FXQ9	Shigella_phage	1.7e-25	100.0
WP_072011717.1\|2927849_2929346_-\|terminase	terminase large subunit	A0A1C9IIA1	Salmonella_phage	7.4e-300	99.8
WP_000929172.1\|2929579_2930074_-\|terminase	phage terminase small subunit P27 family	A0A1B3B2F4	Salmonella_phage	8.6e-88	99.4
WP_001526899.1\|2930199_2930550_-	HNH endonuclease	Q8HA82	Salmonella_phage	7.5e-62	94.0
WP_001298464.1\|2931074_2931368_+	increased serum survival lipoprotein Iss	K7PL54	Enterobacteria_phage	7.0e-45	92.8
WP_001228695.1\|2931458_2931641_-\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	2.9e-17	98.3
WP_001135277.1\|2931857_2932355_-	lysozyme RrrD	M1FJA0	Enterobacteria_phage	5.4e-90	97.0
WP_000839596.1\|2932354_2932570_-\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	9.0e-34	100.0
WP_000737271.1\|2933158_2934241_+	porin OmpC	Q1MVN1	Enterobacteria_phage	1.6e-166	80.1
WP_001204776.1\|2934429_2934813_-	antitermination protein QuuD	A0A088CD47	Shigella_phage	1.5e-55	83.3
WP_000971053.1\|2934898_2935039_-	YlcG family protein	K7PHH3	Enterobacteria_phage	3.6e-07	67.4
WP_001099712.1\|2935035_2935398_-	crossover junction endodeoxyribonuclease RusA	K7PM48	Enterobacteria_phage	4.3e-60	96.5
WP_000950951.1\|2935417_2935612_-	protein ninF	NA	NA	NA	NA
WP_000386643.1\|2935604_2935946_-	DUF2591 family protein	Q76H72	Enterobacteria_phage	1.6e-61	96.5
WP_024192700.1\|2935948_2936125_-	NinE family protein	A5VW90	Enterobacteria_phage	6.3e-25	94.8
WP_000153286.1\|2936121_2936649_-	phage N-6-adenine-methyltransferase	A0A1I9LJP9	Stx_converting_phage	4.7e-100	99.4
WP_000736913.1\|2936645_2937086_-	recombination protein NinB	M1FPM8	Enterobacteria_phage	1.2e-80	100.0
WP_000145927.1\|2937159_2937450_-	protein ren	O48423	Enterobacteria_phage	2.8e-46	97.9
WP_000788872.1\|2937446_2938148_-	Replication protein 14	A0A0P0ZD31	Stx2-converting_phage	2.9e-129	99.6
WP_000185431.1\|2938144_2939044_-	replication protein	K7P7F0	Enterobacteria_phage	3.5e-172	99.0
WP_000442609.1\|2939076_2939373_-	hypothetical protein	G9L678	Escherichia_phage	2.2e-46	94.9
WP_000067727.1\|2939514_2939730_-	helix-turn-helix transcriptional regulator	A0A0N7C2U7	Escherichia_phage	2.2e-35	100.0
WP_001302016.1\|2939806_2940502_+	LexA family transcriptional regulator	A0A0N7BTS4	Escherichia_phage	8.6e-134	100.0
WP_001062368.1\|2940541_2941099_+	hypothetical protein	NA	NA	NA	NA
WP_000968518.1\|2941095_2941848_+	DUF1828 domain-containing protein	NA	NA	NA	NA
WP_000438342.1\|2942124_2942307_+	hypothetical protein	A0A0N7C057	Escherichia_phage	1.1e-27	98.3
WP_000088199.1\|2942284_2942557_+	hypothetical protein	A0A0N7C217	Escherichia_phage	2.8e-40	98.9
WP_001066170.1\|2942573_2943155_-	superinfection exclusion protein B	K7P6T7	Enterobacteria_phage	1.4e-92	92.7
WP_000213979.1\|2943368_2943569_+	Restriction inhibitor protein ral	A0A0K2FJE6	Enterobacteria_phage	7.1e-33	98.5
WP_000065374.1\|2943751_2944120_+	DUF2528 family protein	M1FPD2	Enterobacteria_phage	2.0e-65	100.0
WP_001198860.1\|2944192_2944357_+\|protease	protease FtsH-inhibitory lysogeny factor CIII	A0A0N6WES3	Escherichia_phage	1.4e-26	100.0
WP_000372923.1\|2944325_2944469_+	host cell division inhibitory peptide Kil	A0A0N7C2U2	Escherichia_phage	2.7e-18	97.9
WP_000995434.1\|2944544_2944841_+	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	1.1e-48	98.0
WP_000100847.1\|2944846_2945632_+	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	6.3e-149	100.0
WP_000186848.1\|2945628_2946309_+	YqaJ viral recombinase family protein	A0A0P0ZCD4	Stx2-converting_phage	1.6e-132	100.0
WP_000149537.1\|2946305_2946488_+	DUF1317 domain-containing protein	A0A1U8QQC1	Enterobacteria_phage	1.8e-27	98.3
WP_000548516.1\|2946460_2946652_+	DUF1382 family protein	A0A0P0ZC67	Stx2-converting_phage	1.8e-25	93.7
WP_000763374.1\|2947038_2947260_+	TraR/DksA family transcriptional regulator	A0A1I9LJM6	Stx_converting_phage	2.3e-32	93.2
WP_000002139.1\|2947259_2947586_+	ASCH domain-containing protein	A5VWB6	Enterobacteria_phage	9.8e-48	95.7
WP_000490213.1\|2947569_2947809_+	DUF4222 domain-containing protein	M1FPC8	Enterobacteria_phage	4.7e-39	96.2
WP_000088653.1\|2947948_2948185_+	excisionase	NA	NA	NA	NA
WP_000741335.1\|2948174_2949317_+\|integrase	tyrosine-type recombinase/integrase	Q77Z02	Phage_21	3.6e-206	100.0
WP_000444487.1\|2949430_2950681_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-23	100.0
WP_001248674.1\|2950852_2951506_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_000476093.1\|2951515_2951977_+	phosphatase NudJ	NA	NA	NA	NA
WP_001295972.1\|2952030_2953137_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
2960488:2960503	attR	NA	NA	NA	NA

DBSCAN-SWA_9

3520295 : 3572669

Enterobacteria_phage(41.82%)

protease,tRNA,lysis,capsid,terminase,integrase,portal,holin,tail,head

attL 3548931:3548946|attR 3577465:3577480

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001201838.1\|3520295_3521249_+\|protease	omptin family outer membrane protease OmpT	NA	NA	NA	NA
WP_000239877.1\|3521480_3522149_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_001311482.1\|3522561_3522861_+\|integrase	tyrosine-type recombinase/integrase	B9UDL9	Salmonella_phage	1.7e-30	82.4
WP_072254160.1\|3522898_3523189_+\|integrase	tyrosine-type recombinase/integrase	A0A088CD23	Shigella_phage	3.8e-35	83.1
WP_001201822.1\|3523663_3524617_+\|protease	omptin family outer membrane protease OmpT	NA	NA	NA	NA
WP_001226381.1\|3524803_3526288_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_000937500.1\|3526471_3526777_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	2.8e-12	76.5
WP_000742376.1\|3526845_3527502_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_071586406.1\|3527556_3527655_-\|tail	phage tail protein	K7PMH7	Enterobacteria_phage	1.2e-06	78.1
WP_000355700.1\|3527694_3527988_-	hypothetical protein	NA	NA	NA	NA
WP_001204581.1\|3527997_3528276_-	hypothetical protein	A0A0E3JSQ1	Enterobacteria_phage	6.0e-22	50.5
WP_021531100.1\|3528272_3530333_-\|tail	phage tail fiber protein	A0A1X7QGG5	Escherichia_phage	4.2e-152	65.7
WP_021531099.1\|3530397_3530997_-	Ail/Lom family outer membrane beta-barrel protein	H6WZM8	Escherichia_phage	1.3e-106	95.5
WP_062880614.1\|3531064_3534544_-	host specificity protein J	A5LH43	Enterobacteria_phage	0.0e+00	90.0
WP_089614625.1\|3534604_3535237_-\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	8.5e-96	97.1
WP_068892106.1\|3535173_3535917_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	2.3e-148	96.8
WP_001152612.1\|3535922_3536621_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	2.1e-132	98.7
WP_000847345.1\|3536620_3536950_-\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	8.1e-58	98.2
WP_164699394.1\|3536946_3539508_-\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	90.2
WP_000459448.1\|3539500_3539935_-\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	1.3e-63	98.3
WP_000479202.1\|3539916_3540330_-\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	7.0e-67	93.6
WP_024210634.1\|3540345_3541086_-\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	2.3e-132	99.6
WP_000683105.1\|3541093_3541489_-\|tail	tail protein	A0A0K2FIF4	Enterobacteria_phage	1.0e-70	100.0
WP_000975070.1\|3541485_3542064_-\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	2.7e-80	100.0
WP_021546026.1\|3542075_3542429_-\|tail	tail attachment protein	A0A2R9YJJ5	Escherichia_phage	2.2e-61	97.4
WP_000158899.1\|3542440_3542836_-	DNA-packaging protein FI	A0A2R9YJP4	Escherichia_phage	2.0e-55	92.4
WP_000063254.1\|3542877_3543903_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	2.8e-189	98.2
WP_001299443.1\|3543958_3544291_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	1.7e-55	100.0
WP_021546025.1\|3544300_3545620_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	6.9e-233	98.4
WP_021546024.1\|3545600_3547202_-\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	7.2e-309	98.7
WP_000198149.1\|3547198_3547405_-\|head,tail	Lambda prophage-derived head-to-tail joining protein W	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
WP_021514143.1\|3547401_3549327_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.7
3548931:3548946	attL	NA	NA	NA	NA
WP_061089094.1\|3549301_3549847_-	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	1.4e-94	98.9
WP_000881608.1\|3550411_3550594_-	hypothetical protein	NA	NA	NA	NA
WP_000830178.1\|3550800_3551127_-	TonB family protein	H6WZK5	Escherichia_phage	3.7e-39	72.2
WP_000738425.1\|3551607_3551901_+	increased serum survival lipoprotein Iss	C6ZCX3	Enterobacteria_phage	1.6e-44	91.8
WP_077877966.1\|3551991_3552174_-\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	6.5e-17	96.7
WP_000992182.1\|3552390_3552924_-	lysozyme	K7PLY1	Enterobacteria_phage	2.6e-98	94.4
WP_000370548.1\|3553029_3553302_+	hypothetical protein	NA	NA	NA	NA
WP_000250557.1\|3553267_3553612_-	YdfR family protein	K7PGU6	Enterobacteria_phage	3.5e-35	90.5
WP_000284486.1\|3553616_3553832_-\|holin	holin	M1FN85	Enterobacteria_phage	1.0e-32	95.8
WP_000502162.1\|3553854_3554046_-	hypothetical protein	NA	NA	NA	NA
WP_021546022.1\|3554925_3555987_-	site-specific DNA-methyltransferase	A5LH81	Enterobacteria_phage	1.3e-202	97.4
WP_001317671.1\|3556136_3556331_-	hypothetical protein	Q8SBE3	Shigella_phage	5.7e-27	95.3
WP_000966854.1\|3556512_3557043_-	hypothetical protein	NA	NA	NA	NA
WP_001047122.1\|3557197_3557950_-	antitermination protein	Q8SBE4	Shigella_phage	8.4e-135	97.6
WP_001535863.1\|3557963_3558953_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.4e-193	98.8
WP_001061427.1\|3558960_3559803_-	KilA-N domain-containing protein	S5MC03	Escherichia_phage	1.1e-138	91.5
WP_000767127.1\|3559822_3560212_-	RusA family crossover junction endodeoxyribonuclease	A0A0P0ZD39	Stx2-converting_phage	1.6e-68	99.2
WP_000210176.1\|3560208_3560535_-	LexA family transcriptional regulator	A0A0N7KZF7	Stx2-converting_phage	2.3e-52	97.2
WP_001573323.1\|3560534_3561029_-	PerC family transcriptional regulator	A0A0P0ZCF0	Stx2-converting_phage	6.2e-86	97.5
WP_021546021.1\|3561025_3561967_-	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	9.5e-152	98.7
WP_001250269.1\|3561956_3562136_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	7.8e-15	68.5
WP_000515847.1\|3562311_3562863_-	hypothetical protein	S5FXP0	Shigella_phage	2.9e-100	98.4
WP_001191674.1\|3562855_3563116_-	helix-turn-helix transcriptional regulator	S5FKP1	Shigella_phage	7.1e-41	100.0
WP_001020634.1\|3563213_3563906_+	helix-turn-helix transcriptional regulator	S5FUZ3	Shigella_phage	1.0e-126	100.0
WP_000559922.1\|3564225_3564741_-	hypothetical protein	NA	NA	NA	NA
WP_000135680.1\|3565211_3565574_+	hypothetical protein	Q8SBF8	Shigella_phage	8.6e-61	100.0
WP_000081287.1\|3565639_3566464_+	DUF2303 family protein	U5P439	Shigella_phage	6.0e-150	100.0
WP_000008165.1\|3566591_3567128_+	5'-deoxynucleotidase	U5P0T3	Shigella_phage	4.8e-100	98.3
WP_001242707.1\|3567118_3567481_+	phage protein	K7PH61	Enterobacteria_phage	4.4e-65	98.3
WP_000206812.1\|3567480_3567786_+	hypothetical protein	U5P0J0	Shigella_phage	9.2e-48	95.0
WP_000433951.1\|3567785_3568157_+	helix-turn-helix domain-containing protein	M1FJ59	Enterobacteria_phage	1.0e-45	80.2
WP_001624790.1\|3568012_3569176_+\|integrase	site-specific integrase	A0A088CD23	Shigella_phage	5.2e-200	86.6
WP_000729155.1\|3569538_3570405_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.7e-30	37.5
WP_000190282.1\|3570406_3570619_+	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_001143516.1\|3570726_3571248_+	metal-dependent hydrolase	NA	NA	NA	NA
WP_000912352.1\|3571283_3572669_-\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.9e-45	34.8
3577465:3577480	attR	NA	NA	NA	NA

DBSCAN-SWA_10

4133228 : 4212261

Enterobacteria_phage(36.67%)

tRNA,capsid,terminase,integrase,portal,holin,tail,head

attL 4154084:4154099|attR 4219556:4219571

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001223184.1\|4133228_4133915_-\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_001295754.1\|4134314_4134455_-	hypothetical protein	NA	NA	NA	NA
WP_001194358.1\|4134550_4135267_+	two-component system response regulator ArcA	NA	NA	NA	NA
WP_000920358.1\|4135326_4136679_-	cell envelope integrity protein CreD	NA	NA	NA	NA
WP_001523910.1\|4136736_4138161_-	two-component system sensor histidine kinase CreC	Q8QKV7	Ectocarpus_siliculosus_virus	4.2e-10	20.9
WP_001188689.1\|4138160_4138850_-	two-component system response regulator CreB	W8CYM9	Bacillus_phage	8.8e-30	35.3
WP_000875487.1\|4138862_4139336_-	protein CreA	NA	NA	NA	NA
WP_000371666.1\|4139546_4140416_+	MDR efflux pump AcrAB transcriptional activator RobA	NA	NA	NA	NA
WP_000942350.1\|4140412_4141060_-	2,3-diphosphoglycerate-dependent phosphoglycerate mutase GpmB	NA	NA	NA	NA
WP_001339518.1\|4141111_4141639_+	non-canonical purine NTP phosphatase	NA	NA	NA	NA
WP_024193365.1\|4141711_4142038_-	trp operon repressor	NA	NA	NA	NA
WP_000409419.1\|4142127_4144065_-	murein transglycosylase	A0A1P8CWQ1	Bacillus_phage	4.0e-11	34.8
WP_000046754.1\|4144271_4145939_+	energy-dependent translational throttle protein EttA	A0A2K9L3Z8	Tupanvirus	1.0e-39	27.7
WP_000093834.1\|4146059_4147292_-	multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR	A0A0C5K935	Enterococcus_phage	2.1e-82	42.6
WP_001029698.1\|4147312_4148695_-	DNA repair protein RadA	NA	NA	NA	NA
WP_001523907.1\|4148743_4149712_-	phosphoserine phosphatase	NA	NA	NA	NA
WP_000124608.1\|4149817_4150462_+	YtjB family periplasmic protein	NA	NA	NA	NA
WP_001523905.1\|4150489_4151506_+	lipoate--protein ligase LplA	NA	NA	NA	NA
WP_000566145.1\|4151537_4151801_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000224879.1\|4151961_4152681_-	purine-nucleoside phosphorylase	NA	NA	NA	NA
WP_000816460.1\|4152737_4153961_-	phosphopentomutase	NA	NA	NA	NA
WP_000477822.1\|4154012_4155335_-	thymidine phosphorylase	A0A0H3UZD4	Geobacillus_virus	4.0e-79	39.8
4154084:4154099	attL	NA	NA	NA	NA
WP_001295412.1\|4155412_4156192_-	deoxyribose-phosphate aldolase	NA	NA	NA	NA
WP_001143234.1\|4156449_4158000_+	YjjI family glycine radical enzyme	NA	NA	NA	NA
WP_024186950.1\|4157971_4158835_+	YjjW family glycine radical enzyme activase	NA	NA	NA	NA
WP_000563043.1\|4159051_4159831_-	metal-dependent hydrolase	NA	NA	NA	NA
WP_001298490.1\|4159827_4160901_-	patatin family protein	NA	NA	NA	NA
WP_000490275.1\|4161022_4161184_-	DUF1328 domain-containing protein	A0A0N7CBR2	Salmonella_phage	1.8e-10	64.2
WP_001385192.1\|4161310_4161916_-	molecular chaperone OsmY	NA	NA	NA	NA
WP_000202563.1\|4162308_4163895_-	peptide chain release factor 3	D0R0F5	Streptococcus_phage	2.4e-30	25.2
WP_001217539.1\|4164114_4164363_+	DinI family protein	A5LH55	Enterobacteria_phage	1.1e-38	100.0
WP_122990060.1\|4164789_4164903_+	hypothetical protein	A0A1C9IHU6	Salmonella_phage	1.1e-06	77.8
WP_000839978.1\|4164971_4165205_+	cold shock protein YdfK	A0A192Y6D5	Salmonella_phage	1.9e-32	87.0
WP_000086527.1\|4165585_4166176_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	1.6e-24	38.8
WP_001306187.1\|4166403_4166697_-	hypothetical protein	NA	NA	NA	NA
WP_001306186.1\|4166739_4167780_-\|tail	tail fiber domain-containing protein	A0A0E3M4A9	Enterobacteria_phage	6.4e-125	67.6
WP_000654169.1\|4167789_4168071_-	hypothetical protein	A0A1X7QHA1	Escherichia_phage	9.1e-18	48.9
WP_001560746.1\|4168070_4170446_-\|tail	phage tail fiber protein	A0A1X7QGG5	Escherichia_phage	4.3e-169	69.5
WP_001228249.1\|4170510_4171110_-	Ail/Lom family outer membrane beta-barrel protein	Q9EV15	Enterobacteria_phage	1.5e-102	92.0
WP_000515333.1\|4171177_4174657_-	host specificity protein J	A5LH43	Enterobacteria_phage	0.0e+00	88.9
WP_000090890.1\|4174717_4175350_-\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	2.2e-96	99.0
WP_001306182.1\|4175286_4176030_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	3.0e-145	94.3
WP_001152461.1\|4176034_4176733_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	1.2e-130	97.0
WP_000847355.1\|4176732_4177062_-\|tail	phage tail protein	A0A2R9YJM0	Escherichia_phage	1.5e-56	96.3
WP_164699410.1\|4177058_4179620_-\|tail	phage tail tape measure protein	A0A0K2FI43	Enterobacteria_phage	0.0e+00	88.6
WP_000459448.1\|4179612_4180047_-\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	1.3e-63	98.3
WP_000479202.1\|4180028_4180442_-\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	7.0e-67	93.6
WP_001306179.1\|4180457_4181198_-\|tail	phage tail protein	A0A2I6TC77	Escherichia_phage	7.8e-133	99.6
WP_000683151.1\|4181205_4181601_-\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	1.4e-69	98.5
WP_000975067.1\|4181597_4182176_-\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	3.5e-80	99.5
WP_001204538.1\|4182186_4182540_-\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	3.1e-39	66.7
WP_000201526.1\|4182532_4182907_-	hypothetical protein	NA	NA	NA	NA
WP_164699411.1\|4182958_4183987_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.9e-113	61.0
WP_000256840.1\|4184044_4184392_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	2.0e-22	58.1
WP_001253996.1\|4184428_4185934_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	1.6e-100	54.0
WP_001306178.1\|4185923_4187516_-\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	1.9e-184	60.9
WP_000259002.1\|4187512_4187719_-\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	7.9e-11	56.9
WP_001306177.1\|4187702_4189631_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	3.3e-260	65.9
WP_001519435.1\|4189602_4190109_-	hypothetical protein	O64316	Escherichia_phage	3.3e-34	48.5
WP_001300120.1\|4190536_4190731_+	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	1.5e-27	98.4
WP_000548592.1\|4190981_4191188_-	hypothetical protein	A0A0K2FJ18	Enterobacteria_phage	3.4e-22	79.4
WP_001019207.1\|4191483_4191657_-	addiction module toxin, GnsA/GnsB family	NA	NA	NA	NA
WP_001443523.1\|4191829_4191985_-	hypothetical protein	NA	NA	NA	NA
WP_071528545.1\|4192132_4192321_-	cold-shock protein	NA	NA	NA	NA
WP_000066495.1\|4192331_4192544_-	cold shock protein CspI	A0A1W6JNX5	Morganella_phage	1.2e-22	74.3
WP_001071778.1\|4192908_4193406_-	DUF2514 domain-containing protein	NA	NA	NA	NA
WP_001101173.1\|4193402_4193936_-	lysozyme	K7PLY1	Enterobacteria_phage	1.4e-96	93.8
WP_001306174.1\|4194049_4194310_+	hypothetical protein	NA	NA	NA	NA
WP_000193256.1\|4194257_4194809_-	YdfR family protein	Q08JA0	Stx2-converting_phage	1.1e-35	50.6
WP_000839580.1\|4194813_4195029_-\|holin	holin	A5LH82	Enterobacteria_phage	1.9e-31	93.0
WP_000066486.1\|4195781_4195997_-	cold shock-like protein CspB	A0A1W6JNX5	Morganella_phage	5.9e-25	75.0
WP_000087755.1\|4196296_4196509_+	cold shock-like protein CspF	NA	NA	NA	NA
WP_122632654.1\|4196563_4196653_+	hypothetical protein	NA	NA	NA	NA
WP_023148371.1\|4196931_4197684_-	antitermination protein	Q8SBE4	Shigella_phage	1.7e-135	98.0
WP_001519432.1\|4197697_4198687_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	4.3e-195	99.7
WP_001072669.1\|4198694_4199510_-	KilA-N domain-containing protein	U5P4K5	Shigella_phage	8.5e-149	99.3
WP_000767110.1\|4199672_4200068_-	RusA family crossover junction endodeoxyribonuclease	A0A0P0ZD39	Stx2-converting_phage	5.7e-66	98.4
WP_000210181.1\|4200064_4200391_-	LexA family transcriptional regulator	U5P451	Shigella_phage	9.2e-54	100.0
WP_001401088.1\|4200387_4201041_-	phage N-6-adenine-methyltransferase	A5LH72	Enterobacteria_phage	3.3e-127	99.1
WP_001332382.1\|4201040_4201535_-	PerC family transcriptional regulator	A0A0P0ZCF0	Stx2-converting_phage	1.9e-87	99.4
WP_164699412.1\|4201531_4202350_-	helix-turn-helix domain-containing protein	Q8SBF1	Shigella_phage	5.6e-116	94.9
WP_015364394.1\|4202346_4202571_-	hypothetical protein	A0A291AX25	Escherichia_phage	1.2e-33	91.9
WP_058905682.1\|4202575_4203412_-	ash family protein	Q8SBF3	Shigella_phage	2.3e-149	98.9
WP_000515860.1\|4203408_4203960_-	hypothetical protein	Q8SBF4	Shigella_phage	7.6e-101	100.0
WP_000649477.1\|4204003_4204204_-	transcriptional regulator	U5P445	Shigella_phage	7.9e-32	100.0
WP_000859460.1\|4204294_4204969_+	LexA family transcriptional regulator	Q8SBF6	Shigella_phage	1.7e-131	99.1
WP_000135680.1\|4205637_4206000_+	hypothetical protein	Q8SBF8	Shigella_phage	8.6e-61	100.0
WP_063628492.1\|4206065_4206890_+	DUF2303 family protein	U5P439	Shigella_phage	6.6e-149	99.3
WP_164699413.1\|4207017_4207554_+	5'-deoxynucleotidase	K7PKJ9	Enterobacteria_phage	1.2e-98	97.2
WP_041124190.1\|4207907_4208528_+	DUF551 domain-containing protein	A5LH60	Enterobacteria_phage	2.2e-112	91.3
WP_088129574.1\|4209262_4210870_+	cytidine deaminase	NA	NA	NA	NA
WP_061066749.1\|4211022_4212261_-\|integrase	site-specific integrase	A5LH57	Enterobacteria_phage	1.0e-233	98.3
4219556:4219571	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP049102

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1262 : 80455

Enterobacteria_phage(22.73%)

transposase,integrase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001066954.1\|1262_2003_-\|integrase	tyrosine-type recombinase/integrase	I3WFA4	Macacine_betaherpesvirus	1.2e-24	57.6
WP_001324033.1\|2123_2312_-	hypothetical protein	NA	NA	NA	NA
WP_000175738.1\|2685_3594_-	antimicrobial resistance protein Mig-14	NA	NA	NA	NA
WP_000771475.1\|3656_4766_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
WP_000280980.1\|5198_6152_-\|protease	omptin family outer membrane protease	NA	NA	NA	NA
WP_001324039.1\|7424_7583_-\|transposase	transposase	NA	NA	NA	NA
WP_000928804.1\|10419_11607_+	efflux RND transporter periplasmic adaptor subunit	A0A140XAI1	Dickeya_phage	1.0e-09	55.7
WP_000733250.1\|11603_13544_+	MacB family efflux pump subunit	G9BWD6	Planktothrix_phage	1.8e-35	39.0
WP_001312828.1\|13547_14918_+	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_000974762.1\|15714_16656_-	hypothetical protein	NA	NA	NA	NA
WP_000450494.1\|18916_20110_-	hypothetical protein	NA	NA	NA	NA
WP_000169527.1\|22141_22441_+\|transposase	transposase	NA	NA	NA	NA
WP_015918726.1\|22437_23304_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.8e-51	40.6
WP_000738422.1\|24465_24759_+	increased serum survival lipoprotein Iss	K7PL54	Enterobacteria_phage	5.9e-44	90.7
WP_001318220.1\|27904_29020_+	salmochelin biosynthesis C-glycosyltransferase IroB	NA	NA	NA	NA
WP_001389363.1\|29159_32819_+	salmochelin/enterobactin export ABC transporter IroC	W8CYL7	Bacillus_phage	3.6e-45	29.8
WP_000933678.1\|32922_34152_+	catecholate siderophore esterase IroD	NA	NA	NA	NA
WP_000271274.1\|34236_35193_+	catecholate siderophore esterase IroE	NA	NA	NA	NA
WP_001222185.1\|35237_37415_-	siderophore salmochelin receptor IroN	A0A0P0I887	Acinetobacter_phage	9.6e-06	31.8
WP_001190234.1\|38280_39315_-	3-deoxy-7-phosphoheptulonate synthase	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	1.9e-73	44.0
WP_000377483.1\|39874_40183_-	hypothetical protein	NA	NA	NA	NA
WP_000969988.1\|40281_40464_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_001324224.1\|40460_40658_-	toxin-antitoxin system protein	NA	NA	NA	NA
WP_001324221.1\|41372_42614_+	HlyD family secretion protein	NA	NA	NA	NA
WP_001183604.1\|42588_44703_+	microcin H47 export transporter peptidase/ATP-binding subunit MchF	W8CYL7	Bacillus_phage	3.6e-34	26.5
WP_001259758.1\|44872_45184_-	colicin V	NA	NA	NA	NA
WP_001323890.1\|45161_45398_-	colicin V immunity protein	NA	NA	NA	NA
WP_000379710.1\|46337_46607_+	membrane protein	NA	NA	NA	NA
WP_001017346.1\|46603_47584_+	NAD(P)-binding domain-containing protein	A0A2H4J2Q2	uncultured_Caudovirales_phage	3.3e-06	41.5
WP_001171523.1\|47659_48040_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	7.1e-66	99.2
WP_000612591.1\|48036_48384_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.2e-61	100.0
WP_001553770.1\|50263_50716_-	peptide deformylase	E3SLL2	Synechococcus_phage	9.2e-12	39.4
WP_079399109.1\|50824_54958_-\|protease	hemoglobin-binding protease autotransporter Hbp	Q9LA54	Enterobacteria_phage	5.2e-295	41.6
WP_001442799.1\|55923_57075_+\|transposase	IS30-like element IS30 family transposase	W5R8L2	Staphylococcus_phage	2.0e-42	35.6
WP_000124098.1\|57196_57562_+	hypothetical protein	NA	NA	NA	NA
WP_001553768.1\|58857_59202_-	hypothetical protein	NA	NA	NA	NA
WP_001347516.1\|59293_59434_-	hypothetical protein	NA	NA	NA	NA
WP_001351729.1\|61814_62207_+	cysteine hydrolase	NA	NA	NA	NA
WP_000058717.1\|62344_63229_+	EamA family transporter	NA	NA	NA	NA
WP_000804064.1\|63260_64460_-	tetracycline efflux MFS transporter Tet(A)	NA	NA	NA	NA
WP_000164043.1\|64565_65216_+	tetracycline resistance transcriptional repressor TetR(A)	NA	NA	NA	NA
WP_000844627.1\|65247_65490_-\|transposase	transposase	NA	NA	NA	NA
WP_001067855.1\|67127_67832_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001138070.1\|68202_71169_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	72.9
WP_000427619.1\|71247_72252_+\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_000954592.1\|72433_72610_-	DUF4102 domain-containing protein	T1S9J3	Salmonella_phage	1.0e-06	68.6
WP_001043260.1\|72939_73755_+	sulfonamide-resistant dihydropteroate synthase Sul2	A0A0B5J4J5	Pandoravirus	5.9e-09	27.6
WP_001082320.1\|73815_74619_+	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA
WP_000480972.1\|74618_75455_+	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
WP_000027057.1\|75685_76546_-	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_001235713.1\|76728_77286_-	recombinase family protein	Q1MVP4	Enterobacteria_phage	7.0e-94	100.0
WP_001143760.1\|77449_80455_+\|transposase	Tn3-like element Tn3 family transposase	Q1MVP5	Enterobacteria_phage	0.0e+00	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP049101

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP049102

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection