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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP049204 Escherichia coli strain PapM-32-1 chromosome, complete genome 8 crisprs csa3,PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,RT,c2c9_V-U4 0 19 6 0

Results visualization

1. NZ_CP049204
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP049204_1 1058534-1059355 Unclear I-E
13 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP049204_2 1084993-1085265 TypeI-E I-E
4 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP049204_3 1602071-1602176 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP049204_4 2191501-2191624 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP049204_5 2893173-2893264 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP049204_6 3025112-3025260 Orphan I-F
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP049204_7 4026938-4027073 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP049204_8 4236722-4236871 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP049204_5 5.1|2893199|40|NZ_CP049204|CRISPRCasFinder 2893199-2893238 40 NZ_CP041417 Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence 47951-47990 0 1.0
NZ_CP049204_7 7.1|4026958|43|NZ_CP049204|PILER-CR 4026958-4027000 43 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 141084-141126 0 1.0
NZ_CP049204_2 2.1|1085022|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT 1085022-1085053 32 NZ_LT991959 Enterobacter cloacae complex sp. isolate C45 plasmid pC45-p2 84406-84437 2 0.938
NZ_CP049204_4 4.1|2191544|38|NZ_CP049204|CRISPRCasFinder 2191544-2191581 38 NZ_CP043437 Enterobacter sp. LU1 plasmid unnamed 113727-113764 2 0.947
NZ_CP049204_7 7.2|4027021|37|NZ_CP049204|PILER-CR 4027021-4027057 37 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 141031-141067 2 0.946
NZ_CP049204_2 2.4|1085205|32|NZ_CP049204|CRISPRCasFinder,CRT 1085205-1085236 32 NZ_CP012254 Cronobacter sakazakii strain NCTC 8155 plasmid pCS1, complete sequence 3328-3359 5 0.844
NZ_CP049204_2 2.4|1085205|32|NZ_CP049204|CRISPRCasFinder,CRT 1085205-1085236 32 NZ_CP037443 Klebsiella sp. PO552 plasmid p2, complete sequence 63232-63263 5 0.844
NZ_CP049204_1 1.3|1058685|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT 1058685-1058716 32 NC_022987 Xylella phage Prado, complete genome 32998-33029 6 0.812
NZ_CP049204_1 1.1|1058563|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT 1058563-1058594 32 CP007645 Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence 235417-235448 7 0.781
NZ_CP049204_1 1.3|1058685|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT 1058685-1058716 32 MH020248 Mycobacterium phage Panamaxus, complete genome 17984-18015 7 0.781
NZ_CP049204_1 1.3|1058685|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT 1058685-1058716 32 MN062712 Mycobacterium phage Pocahontas, complete genome 17981-18012 7 0.781
NZ_CP049204_1 1.3|1058685|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT 1058685-1058716 32 KX640831 Mycobacterium phage Margo, complete genome 18010-18041 7 0.781
NZ_CP049204_1 1.3|1058685|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT 1058685-1058716 32 MG812492 Mycobacterium phage Lambert1, complete genome 17984-18015 7 0.781
NZ_CP049204_1 1.3|1058685|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT 1058685-1058716 32 MK284519 Mycobacterium phage Norbert, complete genome 17984-18015 7 0.781
NZ_CP049204_1 1.3|1058685|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT 1058685-1058716 32 MN062706 Mycobacterium phage Heathen, complete genome 17237-17268 7 0.781
NZ_CP049204_1 1.3|1058685|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT 1058685-1058716 32 MK524496 Mycobacterium phage Veracruz, complete genome 17984-18015 7 0.781
NZ_CP049204_1 1.3|1058685|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT 1058685-1058716 32 NC_042328 Mycobacterium virus HelDan, complete genome 17489-17520 7 0.781
NZ_CP049204_1 1.3|1058685|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT 1058685-1058716 32 MH976517 Mycobacterium phage Popcicle, complete genome 17981-18012 7 0.781
NZ_CP049204_1 1.3|1058685|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT 1058685-1058716 32 MF373840 Mycobacterium phage Fred313, complete genome 17181-17212 7 0.781
NZ_CP049204_1 1.3|1058685|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT 1058685-1058716 32 KT326767 Mycobacterium phage Texage, complete genome 17985-18016 7 0.781
NZ_CP049204_1 1.3|1058685|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT 1058685-1058716 32 KM592966 Mycobacterium phage QuinnKiro, complete genome 17984-18015 7 0.781
NZ_CP049204_1 1.3|1058685|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT 1058685-1058716 32 MH316563 Mycobacterium phage Hookmount, complete genome 17985-18016 7 0.781
NZ_CP049204_1 1.3|1058685|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT 1058685-1058716 32 KJ510415 Mycobacterium phage Phantastic, complete genome 17401-17432 7 0.781
NZ_CP049204_1 1.3|1058685|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT 1058685-1058716 32 KX670828 Mycobacterium phage Todacoro, complete genome 17984-18015 7 0.781
NZ_CP049204_1 1.3|1058685|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT 1058685-1058716 32 MK494127 Mycobacterium phage Noella, complete genome 17985-18016 7 0.781
NZ_CP049204_1 1.5|1058807|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT 1058807-1058838 32 NC_015378 Burkholderia gladioli BSR3 plasmid bgla_3p, complete sequence 13895-13926 7 0.781
NZ_CP049204_1 1.7|1058929|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT 1058929-1058960 32 NZ_CP014527 Haematospirillum jordaniae strain H5569 plasmid unnamed 2, complete sequence 153850-153881 7 0.781
NZ_CP049204_1 1.10|1059112|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT 1059112-1059143 32 NZ_CP014527 Haematospirillum jordaniae strain H5569 plasmid unnamed 2, complete sequence 153850-153881 7 0.781
NZ_CP049204_1 1.3|1058685|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT 1058685-1058716 32 KY420199 Proteus phage vB_PvuS_Pm34, complete genome 7738-7769 8 0.75
NZ_CP049204_1 1.4|1058746|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT 1058746-1058777 32 NC_011368 Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence 833757-833788 8 0.75
NZ_CP049204_3 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder 1602097-1602150 54 MT230402 Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence 262-315 8 0.852
NZ_CP049204_3 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder 1602097-1602150 54 NZ_AP023208 Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence 12103-12156 8 0.852
NZ_CP049204_3 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder 1602097-1602150 54 NZ_CP019246 Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence 41406-41459 8 0.852
NZ_CP049204_6 6.2|3025201|31|NZ_CP049204|CRISPRCasFinder 3025201-3025231 31 NZ_CP050314 Shewanella aestuarii strain PN3F2 plasmid pPN3F2_1, complete sequence 177100-177130 8 0.742
NZ_CP049204_1 1.3|1058685|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT 1058685-1058716 32 NZ_CP017148 Bosea vaviloviae strain Vaf18 plasmid unnamed1, complete sequence 108763-108794 9 0.719
NZ_CP049204_1 1.8|1058990|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT 1058990-1059021 32 NC_021289 Burkholderia insecticola plasmid p1, complete sequence 745343-745374 9 0.719
NZ_CP049204_1 1.8|1058990|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT 1058990-1059021 32 MN694785 Marine virus AFVG_250M136, complete genome 23405-23436 9 0.719
NZ_CP049204_1 1.8|1058990|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT 1058990-1059021 32 MN694521 Marine virus AFVG_250M135, complete genome 23404-23435 9 0.719
NZ_CP049204_1 1.9|1059051|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT 1059051-1059082 32 NZ_CP045339 Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence 695518-695549 9 0.719
NZ_CP049204_1 1.11|1059173|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT 1059173-1059204 32 NC_021289 Burkholderia insecticola plasmid p1, complete sequence 745343-745374 9 0.719
NZ_CP049204_1 1.11|1059173|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT 1059173-1059204 32 MN694785 Marine virus AFVG_250M136, complete genome 23405-23436 9 0.719
NZ_CP049204_1 1.11|1059173|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT 1059173-1059204 32 MN694521 Marine virus AFVG_250M135, complete genome 23404-23435 9 0.719
NZ_CP049204_6 6.1|3025141|31|NZ_CP049204|CRISPRCasFinder 3025141-3025171 31 NZ_CP045060 Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p1, complete sequence 9737-9767 9 0.71
NZ_CP049204_6 6.1|3025141|31|NZ_CP049204|CRISPRCasFinder 3025141-3025171 31 NZ_CP045053 Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p1, complete sequence 9738-9768 9 0.71
NZ_CP049204_6 6.1|3025141|31|NZ_CP049204|CRISPRCasFinder 3025141-3025171 31 NZ_CP045057 Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p1, complete sequence 9737-9767 9 0.71
NZ_CP049204_1 1.8|1058990|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT 1058990-1059021 32 NZ_AP021845 Azospira sp. I09 plasmid pAZI09, complete sequence 210970-211001 10 0.688
NZ_CP049204_1 1.8|1058990|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT 1058990-1059021 32 KX925554 Streptomyces phage BRock, complete genome 11615-11646 10 0.688
NZ_CP049204_1 1.11|1059173|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT 1059173-1059204 32 NZ_AP021845 Azospira sp. I09 plasmid pAZI09, complete sequence 210970-211001 10 0.688
NZ_CP049204_1 1.11|1059173|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT 1059173-1059204 32 KX925554 Streptomyces phage BRock, complete genome 11615-11646 10 0.688
NZ_CP049204_2 2.4|1085205|32|NZ_CP049204|CRISPRCasFinder,CRT 1085205-1085236 32 MT679221 Proteus phage 7, complete genome 91877-91908 10 0.688
NZ_CP049204_2 2.4|1085205|32|NZ_CP049204|CRISPRCasFinder,CRT 1085205-1085236 32 MT799840 Salmonella phage JN03, complete genome 92242-92273 10 0.688
NZ_CP049204_3 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder 1602097-1602150 54 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 229441-229494 10 0.815
NZ_CP049204_3 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder 1602097-1602150 54 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 239935-239988 10 0.815
NZ_CP049204_3 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder 1602097-1602150 54 NZ_CP044147 Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2 7383-7436 10 0.815
NZ_CP049204_3 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder 1602097-1602150 54 CP044351 Escherichia coli strain 194195 plasmid p194195_1, complete sequence 84207-84260 10 0.815
NZ_CP049204_3 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder 1602097-1602150 54 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 87127-87180 10 0.815
NZ_CP049204_3 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder 1602097-1602150 54 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 230847-230900 10 0.815
NZ_CP049204_3 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder 1602097-1602150 54 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 211817-211870 10 0.815
NZ_CP049204_1 1.12|1059234|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT 1059234-1059265 32 CP047389 Agrobacterium sp. CGMCC 11546 plasmid pA 221554-221585 11 0.656
NZ_CP049204_3 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder 1602097-1602150 54 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 4105-4158 11 0.796
NZ_CP049204_3 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder 1602097-1602150 54 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 3363-3416 11 0.796
NZ_CP049204_3 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder 1602097-1602150 54 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 4104-4157 11 0.796
NZ_CP049204_3 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder 1602097-1602150 54 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 3362-3415 11 0.796
NZ_CP049204_3 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder 1602097-1602150 54 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 4104-4157 11 0.796
NZ_CP049204_3 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder 1602097-1602150 54 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 3362-3415 11 0.796
NZ_CP049204_3 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder 1602097-1602150 54 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 4104-4157 11 0.796
NZ_CP049204_3 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder 1602097-1602150 54 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 3362-3415 11 0.796
NZ_CP049204_3 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder 1602097-1602150 54 NZ_AP023207 Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence 31242-31295 11 0.796
NZ_CP049204_3 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder 1602097-1602150 54 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 34-87 12 0.778
NZ_CP049204_3 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder 1602097-1602150 54 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 4004-4057 12 0.778
NZ_CP049204_3 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder 1602097-1602150 54 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 229239-229292 12 0.778
NZ_CP049204_3 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder 1602097-1602150 54 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 229340-229393 12 0.778
NZ_CP049204_3 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder 1602097-1602150 54 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 33-86 12 0.778
NZ_CP049204_3 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder 1602097-1602150 54 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 4003-4056 12 0.778
NZ_CP049204_3 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder 1602097-1602150 54 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 239733-239786 12 0.778
NZ_CP049204_3 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder 1602097-1602150 54 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 239834-239887 12 0.778
NZ_CP049204_3 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder 1602097-1602150 54 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 33-86 12 0.778
NZ_CP049204_3 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder 1602097-1602150 54 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 4003-4056 12 0.778
NZ_CP049204_3 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder 1602097-1602150 54 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 230645-230698 12 0.778
NZ_CP049204_3 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder 1602097-1602150 54 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 230746-230799 12 0.778
NZ_CP049204_3 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder 1602097-1602150 54 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 33-86 12 0.778
NZ_CP049204_3 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder 1602097-1602150 54 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 4003-4056 12 0.778
NZ_CP049204_3 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder 1602097-1602150 54 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 211615-211668 12 0.778
NZ_CP049204_3 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder 1602097-1602150 54 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 211716-211769 12 0.778
NZ_CP049204_3 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder 1602097-1602150 54 NZ_CP044307 Escherichia coli strain C27A plasmid pC27A-2, complete sequence 15008-15061 12 0.778
NZ_CP049204_3 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder 1602097-1602150 54 NZ_CP044307 Escherichia coli strain C27A plasmid pC27A-2, complete sequence 18340-18393 12 0.778
NZ_CP049204_3 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder 1602097-1602150 54 NZ_CP010208 Escherichia coli strain M11 plasmid B, complete sequence 30167-30220 13 0.759
NZ_CP049204_3 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder 1602097-1602150 54 MT230312 Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence 160-213 14 0.741

1. spacer 5.1|2893199|40|NZ_CP049204|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 0, identity: 1.0

gcgctgcgggtcattcttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
****************************************

2. spacer 7.1|4026958|43|NZ_CP049204|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 0, identity: 1.0

tgtcacacgcagataaatccaactttcaatattgttaagttcc	CRISPR spacer
tgtcacacgcagataaatccaactttcaatattgttaagttcc	Protospacer
*******************************************

3. spacer 2.1|1085022|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LT991959 (Enterobacter cloacae complex sp. isolate C45 plasmid pC45-p2) position: , mismatch: 2, identity: 0.938

ttcagccagatcgctaacatcatattgtactg	CRISPR spacer
ttcagccagatcgccaacatcattttgtactg	Protospacer
**************.******** ********

4. spacer 4.1|2191544|38|NZ_CP049204|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

5. spacer 7.2|4027021|37|NZ_CP049204|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 2, identity: 0.946

catggcgtagcaaaaagaaattttcaatattgtttta	CRISPR spacer
catggcgtagaaaaaagaaattttcaatattgcttta	Protospacer
********** *********************.****

6. spacer 2.4|1085205|32|NZ_CP049204|CRISPRCasFinder,CRT matches to NZ_CP012254 (Cronobacter sakazakii strain NCTC 8155 plasmid pCS1, complete sequence) position: , mismatch: 5, identity: 0.844

aacacctgtccgtggaaatatcgtggtcctga	CRISPR spacer
aacacctgcccgtggaaatatcgcggcgcaga	Protospacer
********.**************.**. * **

7. spacer 2.4|1085205|32|NZ_CP049204|CRISPRCasFinder,CRT matches to NZ_CP037443 (Klebsiella sp. PO552 plasmid p2, complete sequence) position: , mismatch: 5, identity: 0.844

aacacctgtccgtggaaatatcgtggtcctga	CRISPR spacer
aacacctgcccgtggaaatatcgcggcacaga	Protospacer
********.**************.**. * **

8. spacer 1.3|1058685|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT matches to NC_022987 (Xylella phage Prado, complete genome) position: , mismatch: 6, identity: 0.812

cccgcctc--tgcgaacgcggcgatccattgctg	CRISPR spacer
--cgactcgaagcgaccgcggcgatccatcgctg	Protospacer
  ** ***   **** *************.****

9. spacer 1.1|1058563|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT matches to CP007645 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence) position: , mismatch: 7, identity: 0.781

gcccgcg-cattttccccgccagtcagccgcgg	CRISPR spacer
-ttcacgaccttttccgcgccagtaagccgcgg	Protospacer
 ..*.** * ****** ******* ********

10. spacer 1.3|1058685|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT matches to MH020248 (Mycobacterium phage Panamaxus, complete genome) position: , mismatch: 7, identity: 0.781

cccgcctctgcgaacgcggcgatccattgctg--	CRISPR spacer
gccgcctgtgcgaacgcagcgatcag--gctgaa	Protospacer
 ****** *********.****** .  ****  

11. spacer 1.3|1058685|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT matches to MN062712 (Mycobacterium phage Pocahontas, complete genome) position: , mismatch: 7, identity: 0.781

cccgcctctgcgaacgcggcgatccattgctg--	CRISPR spacer
gccgcctgtgcgaacgcagcgatcag--gctgaa	Protospacer
 ****** *********.****** .  ****  

12. spacer 1.3|1058685|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT matches to KX640831 (Mycobacterium phage Margo, complete genome) position: , mismatch: 7, identity: 0.781

cccgcctctgcgaacgcggcgatccattgctg--	CRISPR spacer
gccgcctgtgcgaacgcagcgatcag--gctgaa	Protospacer
 ****** *********.****** .  ****  

13. spacer 1.3|1058685|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT matches to MG812492 (Mycobacterium phage Lambert1, complete genome) position: , mismatch: 7, identity: 0.781

cccgcctctgcgaacgcggcgatccattgctg--	CRISPR spacer
gccgcctgtgcgaacgcagcgatcag--gctgaa	Protospacer
 ****** *********.****** .  ****  

14. spacer 1.3|1058685|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT matches to MK284519 (Mycobacterium phage Norbert, complete genome) position: , mismatch: 7, identity: 0.781

cccgcctctgcgaacgcggcgatccattgctg--	CRISPR spacer
gccgcctgtgcgaacgcagcgatcag--gctgaa	Protospacer
 ****** *********.****** .  ****  

15. spacer 1.3|1058685|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT matches to MN062706 (Mycobacterium phage Heathen, complete genome) position: , mismatch: 7, identity: 0.781

cccgcctctgcgaacgcggcgatccattgctg--	CRISPR spacer
gccgcctgtgcgaaggcggcgatcag--gctgaa	Protospacer
 ****** ****** ********* .  ****  

16. spacer 1.3|1058685|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT matches to MK524496 (Mycobacterium phage Veracruz, complete genome) position: , mismatch: 7, identity: 0.781

cccgcctctgcgaacgcggcgatccattgctg--	CRISPR spacer
gccgcctgtgcgaacgcagcgatcag--gctgaa	Protospacer
 ****** *********.****** .  ****  

17. spacer 1.3|1058685|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT matches to NC_042328 (Mycobacterium virus HelDan, complete genome) position: , mismatch: 7, identity: 0.781

cccgcctctgcgaacgcggcgatccattgctg--	CRISPR spacer
gccgcctgtgcgaaggcggcgatcag--gctgaa	Protospacer
 ****** ****** ********* .  ****  

18. spacer 1.3|1058685|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT matches to MH976517 (Mycobacterium phage Popcicle, complete genome) position: , mismatch: 7, identity: 0.781

cccgcctctgcgaacgcggcgatccattgctg--	CRISPR spacer
gccgcctgtgcgaacgcagcgatcag--gctgaa	Protospacer
 ****** *********.****** .  ****  

19. spacer 1.3|1058685|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT matches to MF373840 (Mycobacterium phage Fred313, complete genome) position: , mismatch: 7, identity: 0.781

cccgcctctgcgaacgcggcgatccattgctg--	CRISPR spacer
gccgcctgtgcgaaggcggcgatcag--gctgaa	Protospacer
 ****** ****** ********* .  ****  

20. spacer 1.3|1058685|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT matches to KT326767 (Mycobacterium phage Texage, complete genome) position: , mismatch: 7, identity: 0.781

cccgcctctgcgaacgcggcgatccattgctg--	CRISPR spacer
gccgcctgtgcgaacgcagcgatcag--gctgaa	Protospacer
 ****** *********.****** .  ****  

21. spacer 1.3|1058685|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT matches to KM592966 (Mycobacterium phage QuinnKiro, complete genome) position: , mismatch: 7, identity: 0.781

cccgcctctgcgaacgcggcgatccattgctg--	CRISPR spacer
gccgcctgtgcgaacgcagcgatcag--gctgaa	Protospacer
 ****** *********.****** .  ****  

22. spacer 1.3|1058685|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT matches to MH316563 (Mycobacterium phage Hookmount, complete genome) position: , mismatch: 7, identity: 0.781

cccgcctctgcgaacgcggcgatccattgctg--	CRISPR spacer
gccgcctgtgcgaacgcagcgatcag--gctgaa	Protospacer
 ****** *********.****** .  ****  

23. spacer 1.3|1058685|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT matches to KJ510415 (Mycobacterium phage Phantastic, complete genome) position: , mismatch: 7, identity: 0.781

cccgcctctgcgaacgcggcgatccattgctg--	CRISPR spacer
gccgcctgtgcgaaggcggcgatcag--gctgaa	Protospacer
 ****** ****** ********* .  ****  

24. spacer 1.3|1058685|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT matches to KX670828 (Mycobacterium phage Todacoro, complete genome) position: , mismatch: 7, identity: 0.781

cccgcctctgcgaacgcggcgatccattgctg--	CRISPR spacer
gccgcctgtgcgaacgcagcgatcag--gctgaa	Protospacer
 ****** *********.****** .  ****  

25. spacer 1.3|1058685|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT matches to MK494127 (Mycobacterium phage Noella, complete genome) position: , mismatch: 7, identity: 0.781

cccgcctctgcgaacgcggcgatccattgctg--	CRISPR spacer
gccgcctgtgcgaacgcagcgatcag--gctgaa	Protospacer
 ****** *********.****** .  ****  

26. spacer 1.5|1058807|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT matches to NC_015378 (Burkholderia gladioli BSR3 plasmid bgla_3p, complete sequence) position: , mismatch: 7, identity: 0.781

ctcgtcgccaatcgccagtcagacatcaaaca-	CRISPR spacer
atcgtcgccaatcgccagaccgac-ccgatcat	Protospacer
 ***************** * *** .*.* ** 

27. spacer 1.7|1058929|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014527 (Haematospirillum jordaniae strain H5569 plasmid unnamed 2, complete sequence) position: , mismatch: 7, identity: 0.781

tgggggcgattgacgagcaggcgcgtaccgtt	CRISPR spacer
tcaaggcgatggccgagcaggcgcgtacagat	Protospacer
* ..****** * *************** * *

28. spacer 1.10|1059112|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014527 (Haematospirillum jordaniae strain H5569 plasmid unnamed 2, complete sequence) position: , mismatch: 7, identity: 0.781

tgggggcgattgacgagcaggcgcgtaccgtt	CRISPR spacer
tcaaggcgatggccgagcaggcgcgtacagat	Protospacer
* ..****** * *************** * *

29. spacer 1.3|1058685|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT matches to KY420199 (Proteus phage vB_PvuS_Pm34, complete genome) position: , mismatch: 8, identity: 0.75

cccgcctctgcgaacgcggcgatccattgctg	CRISPR spacer
ccattttctgcaaaggcggcgatccattgtcg	Protospacer
**  ..*****.** **************..*

30. spacer 1.4|1058746|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT matches to NC_011368 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence) position: , mismatch: 8, identity: 0.75

atctggacgcatgggggaaagctgcgg-aacgc	CRISPR spacer
gagtggacgcatgaaggaaagctgcgacagcg-	Protospacer
.  **********..***********. *.** 

31. spacer 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder matches to MT230402 (Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence) position: , mismatch: 8, identity: 0.852

cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
catccggcaatcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaaa	Protospacer
**. * *** .* .***************** **********************

32. spacer 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 8, identity: 0.852

cacgccg-catcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
-gctccgacgttcggtgcctgatgcgacgctggcgcgtcttatcaggcctacgag	Protospacer
 .* *** *.*.* **************************************.*.

33. spacer 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder matches to NZ_CP019246 (Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence) position: , mismatch: 8, identity: 0.852

cacgccgcatcctg-tgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
-aggcaccgtgctgatgtctgatgcgacgctggcgcgtcttatcagacctacaaa	Protospacer
 * **  *.* *** **.****************************.********

34. spacer 6.2|3025201|31|NZ_CP049204|CRISPRCasFinder matches to NZ_CP050314 (Shewanella aestuarii strain PN3F2 plasmid pPN3F2_1, complete sequence) position: , mismatch: 8, identity: 0.742

gtacggcagtgaacgcagctgaaattgagag	CRISPR spacer
atatagcagtgaaagcatctgaaattgatga	Protospacer
.**..******** *** ********** ..

35. spacer 1.3|1058685|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017148 (Bosea vaviloviae strain Vaf18 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

cccgcctctgcgaacgcggcgatccattgctg	CRISPR spacer
gccgccgctgcgatcgcggcgatctccctttg	Protospacer
 ***** ****** **********. .. .**

36. spacer 1.8|1058990|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT matches to NC_021289 (Burkholderia insecticola plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

caatccacgccgaagcgctggaaatggaaaaa	CRISPR spacer
tgatccacgccgaagctctcgaaatgcacgct	Protospacer
..************** ** ****** * .  

37. spacer 1.8|1058990|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT matches to MN694785 (Marine virus AFVG_250M136, complete genome) position: , mismatch: 9, identity: 0.719

caatccacgccgaagcgctggaaatggaaaaa	CRISPR spacer
ttatccacgccgaagtggtggaaatcctagac	Protospacer
. *************.* *******   *.* 

38. spacer 1.8|1058990|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT matches to MN694521 (Marine virus AFVG_250M135, complete genome) position: , mismatch: 9, identity: 0.719

caatccacgccgaagcgctggaaatggaaaaa	CRISPR spacer
ttatccacgccgaagtggtggaaatcctagac	Protospacer
. *************.* *******   *.* 

39. spacer 1.9|1059051|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045339 (Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence) position: , mismatch: 9, identity: 0.719

tcattcaaagagcagtacgaagaactttttaa	CRISPR spacer
gtcttcaaagcccagtacgaagaactcattct	Protospacer
 . *******  **************. **  

40. spacer 1.11|1059173|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT matches to NC_021289 (Burkholderia insecticola plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

caatccacgccgaagcgctggaaatggaaaaa	CRISPR spacer
tgatccacgccgaagctctcgaaatgcacgct	Protospacer
..************** ** ****** * .  

41. spacer 1.11|1059173|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT matches to MN694785 (Marine virus AFVG_250M136, complete genome) position: , mismatch: 9, identity: 0.719

caatccacgccgaagcgctggaaatggaaaaa	CRISPR spacer
ttatccacgccgaagtggtggaaatcctagac	Protospacer
. *************.* *******   *.* 

42. spacer 1.11|1059173|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT matches to MN694521 (Marine virus AFVG_250M135, complete genome) position: , mismatch: 9, identity: 0.719

caatccacgccgaagcgctggaaatggaaaaa	CRISPR spacer
ttatccacgccgaagtggtggaaatcctagac	Protospacer
. *************.* *******   *.* 

43. spacer 6.1|3025141|31|NZ_CP049204|CRISPRCasFinder matches to NZ_CP045060 (Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p1, complete sequence) position: , mismatch: 9, identity: 0.71

tggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
caccgggcgggtggaacatgttaccaggaca	Protospacer
.. .***********..********** . *

44. spacer 6.1|3025141|31|NZ_CP049204|CRISPRCasFinder matches to NZ_CP045053 (Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p1, complete sequence) position: , mismatch: 9, identity: 0.71

tggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
caccgggcgggtggaacatgttaccaggaca	Protospacer
.. .***********..********** . *

45. spacer 6.1|3025141|31|NZ_CP049204|CRISPRCasFinder matches to NZ_CP045057 (Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p1, complete sequence) position: , mismatch: 9, identity: 0.71

tggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
caccgggcgggtggaacatgttaccaggaca	Protospacer
.. .***********..********** . *

46. spacer 1.8|1058990|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP021845 (Azospira sp. I09 plasmid pAZI09, complete sequence) position: , mismatch: 10, identity: 0.688

caatccacgccgaagcgctggaaatggaaaaa	CRISPR spacer
aggaactggccgaagcgctggcagtggaaaag	Protospacer
 ..  *  ************* *.*******.

47. spacer 1.8|1058990|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT matches to KX925554 (Streptomyces phage BRock, complete genome) position: , mismatch: 10, identity: 0.688

caatccacgccgaagcgctggaaatggaaaaa	CRISPR spacer
tgctccacgcggaagagctggaaatgatgtac	Protospacer
.. ******* **** **********. . * 

48. spacer 1.11|1059173|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP021845 (Azospira sp. I09 plasmid pAZI09, complete sequence) position: , mismatch: 10, identity: 0.688

caatccacgccgaagcgctggaaatggaaaaa	CRISPR spacer
aggaactggccgaagcgctggcagtggaaaag	Protospacer
 ..  *  ************* *.*******.

49. spacer 1.11|1059173|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT matches to KX925554 (Streptomyces phage BRock, complete genome) position: , mismatch: 10, identity: 0.688

caatccacgccgaagcgctggaaatggaaaaa	CRISPR spacer
tgctccacgcggaagagctggaaatgatgtac	Protospacer
.. ******* **** **********. . * 

50. spacer 2.4|1085205|32|NZ_CP049204|CRISPRCasFinder,CRT matches to MT679221 (Proteus phage 7, complete genome) position: , mismatch: 10, identity: 0.688

aacacctgtccgtggaaatatcgtggtcctga	CRISPR spacer
ttttcctgtccctggaaatatcgttgtggttg	Protospacer
  . ******* ************ **  * .

51. spacer 2.4|1085205|32|NZ_CP049204|CRISPRCasFinder,CRT matches to MT799840 (Salmonella phage JN03, complete genome) position: , mismatch: 10, identity: 0.688

aacacctgtccgtggaaatatcgtggtcctga	CRISPR spacer
ttttcctgtccctggaaatatcgttgtggttg	Protospacer
  . ******* ************ **  * .

52. spacer 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 10, identity: 0.815

cacgccgcatcctg-tgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
-cagtcgtgtgcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaa	Protospacer
   *.**..* * * ****************..**********************

53. spacer 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 10, identity: 0.815

cacgccgcatcctg-tgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
-cagtcgtgtgcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaa	Protospacer
   *.**..* * * ****************..**********************

54. spacer 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 10, identity: 0.815

cacgcc-gcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
-gcgctggtgccggatgcctgatgcgacgctggcgcgtcttatcatgcctacaaa	Protospacer
 .***. *...*  .****************************** *********

55. spacer 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 10, identity: 0.815

cacgcc-gcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
-gcgctggtgccggatgcctgatgcgacgctggcgcgtcttatcatgcctacaaa	Protospacer
 .***. *...*  .****************************** *********

56. spacer 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 10, identity: 0.815

cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
cattcggtgcacgatgcctgatgcgacgctgccgcgtcttatcaggcctacaaa	Protospacer
**. * *... * .***************** **********************

57. spacer 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 10, identity: 0.815

cacgccgcatcctg-tgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
-cagtcgtgtgcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaa	Protospacer
   *.**..* * * ****************..**********************

58. spacer 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 10, identity: 0.815

cacgccgcatcctg-tgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
-cagtcgtgtgcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaa	Protospacer
   *.**..* * * ****************..**********************

59. spacer 1.12|1059234|32|NZ_CP049204|PILER-CR,CRISPRCasFinder,CRT matches to CP047389 (Agrobacterium sp. CGMCC 11546 plasmid pA) position: , mismatch: 11, identity: 0.656

tttacctgctcggtgatatcgtcctgcaaatc	CRISPR spacer
gcctgctgctcggtgatttcgtccggcatggg	Protospacer
 ..  ************ ****** *** .  

60. spacer 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.796

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
cagttatgcgcag------atgcctgatgcgacgctggcgcgtcttatcatgcctacaaa	Protospacer
      ..*** *      .****************************** *********

61. spacer 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.796

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
cagttgtacgcag------gtgcctgatgcgacgctggcgcgtcttatcatgcctacgag	Protospacer
      .**** *      ******************************* ******.*.

62. spacer 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.796

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
cagttatgcgcag------atgcctgatgcgacgctggcgcgtcttatcatgcctacaaa	Protospacer
      ..*** *      .****************************** *********

63. spacer 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.796

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
cagttgtacgcag------gtgcctgatgcgacgctggcgcgtcttatcatgcctacgag	Protospacer
      .**** *      ******************************* ******.*.

64. spacer 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.796

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
cagttatgcgcag------atgcctgatgcgacgctggcgcgtcttatcatgcctacaaa	Protospacer
      ..*** *      .****************************** *********

65. spacer 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.796

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
cagttgtacgcag------gtgcctgatgcgacgctggcgcgtcttatcatgcctacgag	Protospacer
      .**** *      ******************************* ******.*.

66. spacer 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.796

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
cagttatgcgcag------atgcctgatgcgacgctggcgcgtcttatcatgcctacaaa	Protospacer
      ..*** *      .****************************** *********

67. spacer 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.796

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
cagttgtacgcag------gtgcctgatgcgacgctggcgcgtcttatcatgcctacgag	Protospacer
      .**** *      ******************************* ******.*.

68. spacer 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 11, identity: 0.796

cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
catccggtaatcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacagc	Protospacer
**. * *.* .* .***************** ********************. 

69. spacer 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.778

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
catttgtgcgctg------atgcctgatgcgacgctgacgcgtcttatcatgcctacaaa	Protospacer
      ..***.*      .*****************.************ *********

70. spacer 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.778

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
taattgtgcgcag------atgcctgatgcgacgctagcgcgtcttatcatgcctacaaa	Protospacer
      ..*** *      .****************.************* *********

71. spacer 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.778

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
cagtcgtgcgcag------atgcctgatgcgacgctaacgcgtcttatcaggcctacaaa	Protospacer
      ..*** *      .****************..**********************

72. spacer 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.778

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
cagtcgtgcgcag------atgcctgatgcgacgctaacgcgtcttatcaggcctacaaa	Protospacer
      ..*** *      .****************..**********************

73. spacer 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.778

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
catttgtgcgctg------atgcctgatgcgacgctgacgcgtcttatcatgcctacaaa	Protospacer
      ..***.*      .*****************.************ *********

74. spacer 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.778

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
taattgtgcgcag------atgcctgatgcgacgctagcgcgtcttatcatgcctacaaa	Protospacer
      ..*** *      .****************.************* *********

75. spacer 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.778

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
cagtcgtgcgcag------atgcctgatgcgacgctaacgcgtcttatcaggcctacaaa	Protospacer
      ..*** *      .****************..**********************

76. spacer 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.778

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
cagtcgtgcgcag------atgcctgatgcgacgctaacgcgtcttatcaggcctacaaa	Protospacer
      ..*** *      .****************..**********************

77. spacer 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.778

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
catttgtgcgctg------atgcctgatgcgacgctgacgcgtcttatcatgcctacaaa	Protospacer
      ..***.*      .*****************.************ *********

78. spacer 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.778

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
taattgtgcgcag------atgcctgatgcgacgctagcgcgtcttatcatgcctacaaa	Protospacer
      ..*** *      .****************.************* *********

79. spacer 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.778

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
cagtcgtgcgcag------atgcctgatgcgacgctaacgcgtcttatcaggcctacaaa	Protospacer
      ..*** *      .****************..**********************

80. spacer 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.778

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
cagtcgtgcgcag------atgcctgatgcgacgctaacgcgtcttatcaggcctacaaa	Protospacer
      ..*** *      .****************..**********************

81. spacer 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.778

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
catttgtgcgctg------atgcctgatgcgacgctgacgcgtcttatcatgcctacaaa	Protospacer
      ..***.*      .*****************.************ *********

82. spacer 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.778

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
taattgtgcgcag------atgcctgatgcgacgctagcgcgtcttatcatgcctacaaa	Protospacer
      ..*** *      .****************.************* *********

83. spacer 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.778

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
cagtcgtgcgcag------atgcctgatgcgacgctaacgcgtcttatcaggcctacaaa	Protospacer
      ..*** *      .****************..**********************

84. spacer 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.778

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
cagtcgtgcgcag------atgcctgatgcgacgctaacgcgtcttatcaggcctacaaa	Protospacer
      ..*** *      .****************..**********************

85. spacer 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 12, identity: 0.778

cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
caacaattaccaggtgcctgatgcgacgctggcgcgtcttatcatgcctacgag	Protospacer
**     .*.*  ******************************* ******.*.

86. spacer 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 12, identity: 0.778

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
catttgtgcgctg------atgcctgatgcgacgctgacgcgtcttatcatgcctacaaa	Protospacer
      ..***.*      .*****************.************ *********

87. spacer 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 13, identity: 0.759

cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
catttgtgctctgatgcctgatgcgacgctgacgcgtcttatcatgcctacaat	Protospacer
**. .    **. .*****************.************ ******** 

88. spacer 3.1|1602097|54|NZ_CP049204|CRISPRCasFinder matches to MT230312 (Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence) position: , mismatch: 14, identity: 0.741

cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
tctccggcaattgaagcctgatgcgacgctgacgcgtcttatcaggcctacnag	Protospacer
. . * *** .. . ****************.******************* *.

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1101558 : 1108698 6 Escherichia_phage(83.33%) NA NA
DBSCAN-SWA_2 1723030 : 1732473 10 Enterobacteria_phage(85.71%) NA NA
DBSCAN-SWA_3 1827152 : 1833459 6 Enterobacteria_phage(50.0%) NA NA
DBSCAN-SWA_4 2480905 : 2534355 60 Escherichia_phage(55.1%) terminase,integrase,tRNA,tail,lysis attL 2500010:2500025|attR 2539955:2539970
DBSCAN-SWA_5 3156126 : 3198602 64 Enterobacteria_phage(44.44%) protease,integrase,tail,holin,lysis,coat attL 3158042:3158056|attR 3198676:3198690
DBSCAN-SWA_6 3679314 : 3772643 101 Shigella_phage(49.18%) plate,protease,terminase,head,integrase,portal,capsid,tail,holin attL 3698921:3698937|attR 3770089:3770105
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage