CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP034967	Aeromonas veronii strain ZfB1 chromosome, complete genome	6 crisprs	csa3,DEDDh,DinG,cas3,WYL	0	0	8	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP034967_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP034967_1

763017-763122

Orphan

Consensus_repeat	Method
ACTAAACGCCAAGGTTTGATCCGAATGAAATCTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP034967_1

>merge|NZ_CP034967|1|763017-763122|CRISPRCasFinder
ACTAAACGCCAAGGTTTGATCCGAATGAAATCTGCATATGCGAGCGACGATGGCGCTGGCCGTTTTATCTGTACTAAACGCTAAGGTTTGATCCGAATGAAATCTG

>NZ_CP034967|1|1|763017-763122|CRISPRCasFinder
ACTAAACGCCAAGGTTTGATCCGAATGAAATCTG	CATATGCGAGCGACGATGGCGCTGGCCGTTTTATCTGT
ACTAAACGCTAAGGTTTGATCCGAATGAAATCTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP034967.1\|WP_164536072.1\|755048_756605_+\|cytochrome-bd-I-ubiquinol-oxidase-subunit-CydA	unknown	unknown	gnl\|CDD\|185052
NZ_CP034967.1\|WP_005362971.1\|769615_770179_+\|DUF2799-domain-containing-protein	unknown	unknown	gnl\|CDD\|378521
NZ_CP034967.1\|WP_005304933.1\|757767_757884_+\|cytochrome-bd-I-oxidase-subunit-CydX	unknown	unknown	gnl\|CDD\|227227
NZ_CP034967.1\|WP_164536074.1\|764576_765890_-\|sodium-dependent-transporter	unknown	unknown	gnl\|CDD\|271367
NZ_CP034967.1\|WP_005335737.1\|758287_758695_+\|tol-pal-system-associated-acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|274304
NZ_CP034967.1\|WP_005313284.1\|762429_762954_+\|peptidoglycan-associated-lipoprotein-Pal	unknown	unknown	gnl\|CDD\|182744
NZ_CP034967.1\|WP_005335722.1\|767044_768358_-\|sodium-dependent-transporter	unknown	unknown	gnl\|CDD\|271367
NZ_CP034967.1\|WP_013723471.1\|759825_760959_+\|cell-envelope-integrity-protein-TolA	unknown	unknown	gnl\|CDD\|368950
NZ_CP034967.1\|WP_005335735.1\|758684_759374_+\|protein-TolQ	unknown	unknown	gnl\|CDD\|131843
NZ_CP034967.1\|WP_041202810.1\|757870_758182_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370577
NZ_CP034967.1\|WP_164536076.1\|768568_769408_-\|isopenicillin-N-synthase-family-oxygenase	unknown	unknown	gnl\|CDD\|226022
NZ_CP034967.1\|WP_005335741.1\|756616_757753_+\|cytochrome-d-ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|184965
NZ_CP034967.1\|WP_164536079.1\|772495_773119_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|225222
NZ_CP034967.1\|WP_164536077.1\|770230_771049_-\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|182523
NZ_CP034967.1\|WP_164536078.1\|771159_772389_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883
NZ_CP034967.1\|WP_005335733.1\|759373_759820_+\|protein-TolR	unknown	unknown	gnl\|CDD\|274306
NZ_CP034967.1\|WP_005335728.1\|761054_762380_+\|Tol-Pal-system-protein-TolB	unknown	unknown	gnl\|CDD\|235312
NZ_CP034967.1\|WP_164536075.1\|766321_767041_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270422
NZ_CP034967.1\|WP_005304871.1\|773430_773907_+\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_CP034967.1\|WP_164536080.1\|774037_774355_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225653

Protein	Function_ID	Function_description	E-value
NZ_CP034967.1\|WP_164536072.1\|755048_756605_+\|cytochrome-bd-I-ubiquinol-oxidase-subunit-CydA	gnl\|CDD\|185052	PRK15097, PRK15097, cytochrome bd-I ubiquinol oxidase subunit CydA.	0
NZ_CP034967.1\|WP_005362971.1\|769615_770179_+\|DUF2799-domain-containing-protein	gnl\|CDD\|378521	pfam10973, DUF2799, Protein of unknown function (DUF2799). Some members in this family of proteins are annotated as yfiL which has no known function.	2.14062e-28
NZ_CP034967.1\|WP_005304933.1\|757767_757884_+\|cytochrome-bd-I-oxidase-subunit-CydX	gnl\|CDD\|227227	COG4890, COG4890, Predicted outer membrane lipoprotein [Function unknown].	9.94001e-13
NZ_CP034967.1\|WP_164536074.1\|764576_765890_-\|sodium-dependent-transporter	gnl\|CDD\|271367	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain. SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. An arrangement of 12 transmembrane (TM) helices appears to be as a common topological motif for eukaryotic and some prokaryotic and archaeal NTTs. However, this subfamily which contains the majority of bacterial members and some archaeal members, appears to contain only 11 TMs; for example the functional Fusobacterium nucleatum tyrosine transporter Tyt1.	6.33875e-163
NZ_CP034967.1\|WP_005335737.1\|758287_758695_+\|tol-pal-system-associated-acyl-CoA-thioesterase	gnl\|CDD\|274304	TIGR02799, Acyl-CoA_thioesterase_YbgC, tol-pal system-associated acyl-CoA thioesterase. The tol-pal system consists of five critical genes. Inner membrane proteins TolQ and TolR convert protomotive force to energy that is transduced through TolA to an outer membrane complex of TolB and Pal. The system is known to be required to maintain outer membrane integrity. In a system with several homologous parts, ExbB and ExbD transduces energy through TonB to a variety of outer membrane proteins, many of which are siderophore receptors. The tol-pal system therefore may also be involved in transport. This family consists of a protein nearly always found in operons with the genes of the tol-pal system. The significance of this thioesterase to the tol-pal system is unclear, but either of two observations may be relevant. First, Pal, or peptidoglycan-associated lipoprotein, has a conserved N-terminal cleavage and acylation that makes it a lipoprotein. Second, the tol-pal system is implicated not only in the import of certain organics but also in the maintenance of outer membrane integrity (by an unknown mechanism).	4.63634e-55
NZ_CP034967.1\|WP_005313284.1\|762429_762954_+\|peptidoglycan-associated-lipoprotein-Pal	gnl\|CDD\|182744	PRK10802, PRK10802, peptidoglycan-associated lipoprotein Pal.	7.01963e-78
NZ_CP034967.1\|WP_005335722.1\|767044_768358_-\|sodium-dependent-transporter	gnl\|CDD\|271367	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain. SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. An arrangement of 12 transmembrane (TM) helices appears to be as a common topological motif for eukaryotic and some prokaryotic and archaeal NTTs. However, this subfamily which contains the majority of bacterial members and some archaeal members, appears to contain only 11 TMs; for example the functional Fusobacterium nucleatum tyrosine transporter Tyt1.	1.14419e-164
NZ_CP034967.1\|WP_013723471.1\|759825_760959_+\|cell-envelope-integrity-protein-TolA	gnl\|CDD\|368950	pfam06519, TolA, TolA C-terminal. This family consists of several bacterial TolA proteins as well as two eukaryotic proteins of unknown function. Tol proteins are involved in the translocation of group A colicins. Colicins are bacterial protein toxins, which are active against Escherichia coli and other related species (See pfam01024). TolA is anchored to the cytoplasmic membrane by a single membrane spanning segment near the N-terminus, leaving most of the protein exposed to the periplasm.	1.87806e-20
NZ_CP034967.1\|WP_005335735.1\|758684_759374_+\|protein-TolQ	gnl\|CDD\|131843	TIGR02796, Protein_TolQ, TolQ protein. TolQ is one of the essential components of the Tol-Pal system. Together with TolR, it harnesses protonmotive force to energize TolA, which spans the periplasm to reach the complex of TolB and Pal at the outer member. The tol-pal system proves to be important for maintaining outer membrane integrity. Gene pairs similar to the TolQ and TolR gene pair often number several per genome, but this model describes specificially TolQ per se, as found in tol-pal operons. A close homolog, excluded from this model, is ExbB of the ExbB/ExbD/TonB protein complex, which powers transport of siderophores and vitamin B12 across the bacterial outer membrane. The Tol-Pal system is exploited by colicin and filamentous phage DNA to enter the cell. It is also implicated in pathogenesis in several bacterial species [Transport and binding proteins, Other, Cellular processes, Pathogenesis].	3.85704e-106
NZ_CP034967.1\|WP_041202810.1\|757870_758182_+\|hypothetical-protein	gnl\|CDD\|370577	pfam09600, Cyd_oper_YbgE, Cyd operon protein YbgE (Cyd_oper_YbgE). This entry describes a small protein of unknown function, about 100 amino acids in length, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It appears to be an integral membrane protein. It is found so far only in the Proteobacteria.	1.39334e-17
NZ_CP034967.1\|WP_164536076.1\|768568_769408_-\|isopenicillin-N-synthase-family-oxygenase	gnl\|CDD\|226022	COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only].	3.77928e-40
NZ_CP034967.1\|WP_005335741.1\|756616_757753_+\|cytochrome-d-ubiquinol-oxidase-subunit-II	gnl\|CDD\|184965	PRK15003, PRK15003, cytochrome d ubiquinol oxidase subunit II.	7.4003e-160
NZ_CP034967.1\|WP_164536079.1\|772495_773119_+\|transcriptional-regulator	gnl\|CDD\|225222	COG2345, COG2345, Predicted transcriptional regulator [Transcription].	1.0392e-57
NZ_CP034967.1\|WP_164536077.1\|770230_771049_-\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|182523	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional.	1.07224e-81
NZ_CP034967.1\|WP_164536078.1\|771159_772389_-\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.05317e-43
NZ_CP034967.1\|WP_005335733.1\|759373_759820_+\|protein-TolR	gnl\|CDD\|274306	TIGR02801, Protein_TolR, TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score. [Transport and binding proteins, Other, Cellular processes, Pathogenesis].	9.04242e-42
NZ_CP034967.1\|WP_005335728.1\|761054_762380_+\|Tol-Pal-system-protein-TolB	gnl\|CDD\|235312	PRK04792, tolB, Tol-Pal system protein TolB.	0
NZ_CP034967.1\|WP_164536075.1\|766321_767041_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270422	cd13704, PBP2_HisK, The periplasmic sensor domain of histidine kinase receptors; the type 2 periplasmic binding fold protein. This subfamily includes the periplasmic sensor domain of the histidine kinase receptors (HisK) which are elements of the two-component signal transduction systems commonly found in bacteria and lower eukaryotes. Typically, the two-component system consists of a membrane-spanning histidine kinase sensor and a cytoplasmic response regulator. The two-component systems serve as a stimulus-response coupling mechanism to enable microorganisms to sense and respond to changes in environmental conditions. Extracellular stimuli such as small molecule ligands and ions are detected by the N-terminal periplasmic sensing domain of the sensor kinase receptor, which regulate the catalytic activity of the cytoplasmic kinase domain and promote ATP-dependent autophosphorylation of a conserved histidine residue. The phosphate is then transferred to a conserved aspartate in the response regulator through a phospho-transfer mechanism, and the activity of the response regulator is in turn regulated. The sensor domain belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space through their function as an initial high-affinity binding component. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	4.42586e-14
NZ_CP034967.1\|WP_005304871.1\|773430_773907_+\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	3.22775e-48
NZ_CP034967.1\|WP_164536080.1\|774037_774355_-\|hypothetical-protein	gnl\|CDD\|225653	COG3111, COG3111, Periplasmic protein with OB-fold [Function unknown].	0.00055518

>NZ_CP034967.1|WP_005313284.1|762429_762954_+|peptidoglycan-associated-lipoprotein-Pal
MQLNKLLKGLAIALPLFTLAACSSSSDSDAAGAESGMTDGMGGVQTGGANGMLSPEEQMRQKFEALQRDNVIYFPFDGYDIQGQYADLLDAHASYLRERPSVKVLIEGHADERGTPEYNIALGERRAKAVAKYLQTLGVQAEQLSIVSYGEEKPLDLSHTEDAFAKNRRAVLVY
>NZ_CP034967.1|WP_005335728.1|761054_762380_+|Tol-Pal-system-protein-TolB
MIRKVFFALVGCLLLGQSAQAALDIVITGGIDSARPIAVAPFKWEGNGQLPQDIAEVVSNDLMRSGKFKPLARGQMPQTPSSSSEINFAPWASQGVEAVVVGSISAVGDGTYKVNFELVDVLKGQLAKAQGGESNGYILDSRMATIPGAQMRQFAHRISDIVYERLTGERGAFLTRLAYVSVQQGTQFPYQLRISDYDGYNEKTLLRSREPLMSPAWSPDGSKLAYVSFENQKSEIYVQDIYTQQRSLITSFRGINGAPEWSPDGRRLAIVLSKDGSPNLYVVDVASKQLTRVTTSRVIDTEPSWMPDGQNLLFTSERGGKPQIYSVNLATGMTRRMTWEGESNQGASITPDGKIMVMVTRVQGQYRIARQDMENNALLVLTQSALDESPSVAPNGSMIIYATIYQGRKSLALVSTDGRFKAVLPTSSGEIRAPAWSPFLN
>NZ_CP034967.1|WP_013723471.1|759825_760959_+|cell-envelope-integrity-protein-TolA
MDVKRGISGYLIASFLLHLIIGIILFVGLDFSKPKRPESKGQIVNAVMLDENFLNEQAKQIQQQKSQPKPQKVEKEKDKEDTDLAKRELAQKQEQLRIAETKRKQAEEATRKAEAEKQKKVAEQKQAEEKAQKAEEARKLEEQKAKKAEAERKAAEAESKALALKKKKEQEKKEAEEKAKAAEAKAKKAEADKKAKAEAEKKAKAEAEKKAKAEAEKKAKEEAEKKAKADAEKKAKAEAEKQAKIAAERKRKAAEQAKLQKEMEEMMQQQLSAEANARSQAASAAAQGEVDKYAALIKATVERYMILDPTMRGKTCTIGVRLASSGFVISVDNGQGDPAVCRSGKAAVLKANQLPVPKDPAAFEMLKEFNLKLEPSI
>NZ_CP034967.1|WP_005335733.1|759373_759820_+|protein-TolR
MQTYQRIRRKKVAEINVVPYIDVMLVLLIIFMAVTPVITQGVKVDLPQAESEQLPEDAKPPFIVSVNTEGEYVIKAGEADDEPVPSGTPEAMQQYITEKAMGYLAINQNAPVVVAGDKAVRYEEVILLMVALKNAGVPQVGLMTDPVN
>NZ_CP034967.1|WP_005335735.1|758684_759374_+|protein-TolQ
MHAEISFIGLFWQASLLVKLVMMTLMSMSIVSWALIIQRSKAIKAANLASEQFEDRFWSGVDLNRLYQESSSRRDDIEGMEDIFYSGFKEYARLLKAGARGQDAVMDGTYRAMRVSLSRAVDDLESNLPVLATIGSISPYIGLFGTVWGIMNAFIALGQVQQATLQMVAPGIAEALIATAMGLFAAIPAVIFYNRFSNKVERLENAYANFMDEFTTILNRQIAQQQGDQ
>NZ_CP034967.1|WP_005335737.1|758287_758695_+|tol-pal-system-associated-acyl-CoA-thioesterase
MGEVFEFPVRVYYEDTDAGGIVYNANYLKFMERARTEFLRAKGVEQDVWLQEGYAFVVSRTEIDFRSAARFNELLNVLTQVIEVKRASLRFSQQILAADGRLITQAMVQIACVSHPQMKPVAIPEKIKGVLLSAR
>NZ_CP034967.1|WP_041202810.1|757870_758182_+|hypothetical-protein
MKTSDRLARLAAPLERQPWQGLMLLAAALLAVAILQAPNLIAANTSEHGLWLAPWLMWAVCCGVLNGLGFHLKSLPGRVLFNPWLAWPSLLYGLWLTHSYFLS
>NZ_CP034967.1|WP_005304933.1|757767_757884_+|cytochrome-bd-I-oxidase-subunit-CydX
MWYFTWILGLLLACAFGIINALWLEHTENMDRQIDENK
>NZ_CP034967.1|WP_005335741.1|756616_757753_+|cytochrome-d-ubiquinol-oxidase-subunit-II
MFDYETLRVIWWALVGVLLIGFAITDGFDMGVGALLPFVGKKDVERRVMLNTMGPHWEGNQVWLVTAGGALFAAWPMVYAATFSGFYIAMILTLMALFLRPVGFKYRSLRADAKWRSNWDWALFAGSAVPPIVFGVAFGNLLQGVPFEFNQFMMLTYHGNFFGLLNPFGILAGLVSLFMLLTQGATWLMMKTDGEVLARSRTAAMICSLLTLVLFAAAGWWVSGMEGYVIVKAAATDAVSNPMNKEVVLQAGAWMNNYTLYPWMVAAPVLGLAMSLLTALFARMNIGWLAFTSSSLAIAGVILTAGFSMFPFVMPSSLEPSLSLTMWDATASFNTLQVMTVAAAIFVPIVLGYTIWTYIKMFGRVTNKHIEDNQQSLY
>NZ_CP034967.1|WP_164536072.1|755048_756605_+|cytochrome-bd-I-ubiquinol-oxidase-subunit-CydA
MIAEHVVDLSRFQFAATALYHFLFVPLTLGMAFILAIMESVYVMTNNTIYRDMTKFWGKLFGINFALGVTTGLAMEFQFGTNWAYYSHYVGDIFGAPLAIEGLMAFFLESTFVGMFFFGWDRLSKHQHLAATWLMALGTNLSALWILVANGWMQNPVGAEFNFESMRMEMMSFADVVLNPVAQVKFVHTVAAGYTCGAMFVLGISSYYLLKNRDVAFARRSFAIAAAFGMASIVSVLILGDESGYETGEVQKVKLAAIEAEWETEPAPAAFTLFGIPNQEEMRTDYAIKIPYALGIIATRSLDGQVTGLKDLKSEHELRVRNGMTAYDLLTKLQSGDKSDETRARFDEVKQDLGYGLLLKRYTSNVTDATDEQIKAAVDDSIPQVLPLFFAFRIMVAVGMLMLVLIGMAFYDSARHQIGKRKWLLKGLLWGIPLPWIAIEAGWFVAEYGRQPWTIAEVLPTSLSASNLPAAEIWFSLIGICLFYTVLLVIEMYLMFKYARLGPSSLKTGKYHFEQIKA
>NZ_CP034967.1|WP_164536074.1|764576_765890_-|sodium-dependent-transporter
MSQVQWSSRLGHVLAAAGTAIGLGAIWKFPYVTATNGGGAFLLVFLLFSFTLGVAVQVGETLLGSHSQRGVLGAFRKLVGPNWRWMGYMGIACGFFIYSFYSVVGGWTVGYAALAMAGKLNLSEGSALTALFNGYVSNPWWPVLTHLIFAGLTWWFVQGGIQKGVERALRWMMPALFIMMLLLVGVGLSMPGSMAGVRQLLLPDFSMLTGQSVLDALGLAFFSLSIGLGVHTTYGAYLPNSEGVLRSGVWVVTLASLISVLAGLMIFPALASTGIDPTAGPGLTFMTMPAVFSYLPFGQGLGVVFFLLLLVAALSSSISMLEHLVRFTTEEWGWSRRGACRVLTLLIMASGIPVSLSFGPWSDLTLFGKTIFELLDYLTSNLMMPLFGLVLTLLLGWRLGDAILPASLSPALRLALLWCWRVAAPLLISGILIRGIM
>NZ_CP034967.1|WP_164536075.1|766321_767041_+|transporter-substrate-binding-domain-containing-protein
MRWMVLPWLLISLSVSAQPALTLLSHDLPPFTEYRDGKLDGFAIRLIDEVQEELGTRYPVRIYPLKRALALARVEPGYGLFVVQRLPERESHFKWVGPLFINRVFIYQAPDSRHPLTSLAQLRDLPRVGVVLGNADDVRLTHEGYTNLVRYKTVGEAIERLMLGKIDALPMAELVMEATLDKMGLSRRSIVSSGVLLHQAGLYIVFSKGTDDAEITRWQHALDAVRAAQGRADGPTREE
>NZ_CP034967.1|WP_005335722.1|767044_768358_-|sodium-dependent-transporter
MKQSQWSSRLGYILAAAGSAVGIGAIWKFPYVTAVNGGGAFLLVFLLFSFTLGVAVLMGETLLGSMSRRGVVGAFSDLLGKQWRWVGVMGVISTLLIYCFYSVVGGWTLGYTGMAISGQLNHGDAAALTARFNDYVSGDVWPILTHLLFAALTWMVVQGGIQKGVERTLRWMMPALFLMILMLVAFGLTLPNAMAGVRHFLMPDFSKLGMSGVLDAMGLAFFSLSIGLGIHTTYGAYLPTSEGVGRSSLWVVLLASMVAVLAGLMIFPVLASTGIDPASGPGLTFMTMPAVFQLLPFGQVLEVIFFALLVFAALSSAISLLEHLQCFLCETWGWSRRTACSAITGFVMVSGVPVSLSFGPLQHATLFGKTIFELLDFVTSNLMMPLFGLMLTLLLGWKLGRKALPQGIASHWHHLLMNCWRWIAPLLIGGILIRGLV
>NZ_CP034967.1|WP_164536076.1|768568_769408_-|isopenicillin-N-synthase-family-oxygenase
MKVLTVDYRSPDAAQRFTESLRTTGFGVLTNHPIPKELVQSIYDNWYRFFMSEQKQDFLFNRETQDGYFPPSVSEVAKGHSQKDIKEYFHIYPWGQMPEELKEQAMEYYRLANGLAAELLGWVEQYTPADIAANYSSPLSSMIEESQKTLLRVLHYPPFDGTEEPGAIRAAAHEDINLLTILPAANEPGLQVKGSDGEWMDVPCDFGTLIINIGDMLQEASRGYYPSTTHRVINPTGGSAAKSRISLPLFLHPRPDVVLSERHTAHSYLMERLRELGVI
>NZ_CP034967.1|WP_005362971.1|769615_770179_+|DUF2799-domain-containing-protein
MSPKILLLTLPVLLAGCSALSEDECRTMSWYNLGYQDGSEGKTRQATRDYVSSCSEYGLKVDEAEWKRGYDKGLELYCIPELAYSKGKEGQAYLGVCPNDASFLKQYQRGYEEYKLAARLREISDELERTERDIDTLERSIRNETNTEQRDYYRAKRDRAIRHYESLRREYNRLRYPDRVIQFSFGG
>NZ_CP034967.1|WP_164536077.1|770230_771049_-|Cof-type-HAD-IIB-family-hydrolase
MSEYKAIALDMDGTLLTRDHKISSATRAALAQARAHGIKVLLVTGRHYMTARPFHHELALDTPLICSNGAYLYDPVQNRILSGDPLAAAPLTELLAAVEAQQMGALFHLSEGIGYIGCEEHVTRIRHWSANQPDHLKIVLHPVEELAGWLDNPVWKLELFNQDPARLHTFMGEVVEQMPFTRDWAAPYAVELVQPGCSKGNRLVQWAASEGIAMEQVVAFGDNNNDISMFEQVGLAVAMGNAAPQIQSHAHRVTADHNEDGIALALQRWVLP
>NZ_CP034967.1|WP_164536078.1|771159_772389_-|MFS-transporter
MEKHGHKNPLWVLVMTVTLAVAGFSLPSPVLAPLLLDPAHGMLTPEASDWSRKVWLGVIMGLYPLFQLVGSPWLGRLSDRYGRKPLLLLSLAGVLAGYALMALGIAWRSLPLLLLSRIVEGLCNGNIAIVQAMAADLAGKEHKARSFAWINIGMNLGWVVGPMIGGYAAVISGDYSLAAWLAVGMTLLNLLLVYWLIPYRPPVAATRQTATLSSRQLLLQPALLPYFALTLISYGAVQLYFTYFNIWLVERLSWDPAQLAQAAVLVSLPMMAGSWLGSRIARHWRGSSLGIVGHLVMASGMLLFILPVHWWGLALTFVPAGIGMSLGELATSVAISNRSHPEQQGQAMGLYRALAVGSEILAVLLGSLVLLAGTEWPFYLATLCSLASAAGFYLLRRRADRRQQLASCT
>NZ_CP034967.1|WP_164536079.1|772495_773119_+|transcriptional-regulator
MNASTDKILFLLKSHGPQSAAALGEQLQMTSMGARQHLLTLEQEGWVTFNDEARGRGRPVRLWQLTEQAWQRFPDTHSDLTVQLIDNVRELFGEEGMERLIQQREQQMLARYQEALGSHGLSGRLAALKELRTREGYMAEILREEDGCWLLWESHCPICVAARTCRGFCRSELALFRQLLAPATVEREQYLLEGAHRCLYRITPPAL
>NZ_CP034967.1|WP_005304871.1|773430_773907_+|Lrp/AsnC-family-transcriptional-regulator
MLKLDRIDRHILELMQENGRISNLELAELVGLSPSPCSRRVKALEDAGLIDTHVTLLNARQLGLTLTAYIHISMDRHTPERFENFDRAISELPEVLECDLITGNDADYQLKVVVRDMEHYQHFLLDKLTHIPGVTGVRSSFVLRRIKHKTALPLNHLG
>NZ_CP034967.1|WP_164536080.1|774037_774355_-|hypothetical-protein
MQTSIVGLSILWGLASFGVQGDFIESRDSVAPSWQAESRVEMEGYLIESLGEDRWLFDNGSESLLVSLPEGQWVPTGERLRVSGEPQQEQSGWLLQVEDIRQVSV

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP034967_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP034967_2

1206135-1206247

Orphan

Consensus_repeat	Method
GCAACGGAGTAACTTGGCTTCAGGCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP034967_2

>merge|NZ_CP034967|2|1206135-1206247|CRISPRCasFinder
GCAACGGAGTAACTTGGCTTCAGGCCCTTTTATTAAGGATGTCTTGGAGTTGAAACAGAAGAATATCAAGGCCGCAGCGCTCGGCTGCAACGGAGTAACTTGGCTTCAGGCCC

>NZ_CP034967|2|2|1206135-1206247|CRISPRCasFinder
GCAACGGAGTAACTTGGCTTCAGGCCC	TTTTATTAAGGATGTCTTGGAGTTGAAACAGAAGAATATCAAGGCCGCAGCGCTCGGCT
GCAACGGAGTAACTTGGCTTCAGGCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP034967.1\|WP_042054529.1\|1214460_1215261_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197666
NZ_CP034967.1\|WP_005362195.1\|1211132_1211684_+\|hemerythrin	unknown	unknown	gnl\|CDD\|226454
NZ_CP034967.1\|WP_005347798.1\|1215272_1215809_-\|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein	unknown	unknown	gnl\|CDD\|176643
NZ_CP034967.1\|WP_164536275.1\|1196552_1198541_-\|bifunctional-metallophosphatase/5'-nucleotidase	unknown	unknown	gnl\|CDD\|277354
NZ_CP034967.1\|WP_164536280.1\|1204888_1205272_+\|SirB2-family-protein	unknown	unknown	gnl\|CDD\|377264
NZ_CP034967.1\|WP_164536278.1\|1202830_1203919_+\|peptide-chain-release-factor-1	unknown	unknown	gnl\|CDD\|234801
NZ_CP034967.1\|WP_005347796.1\|1216005_1217262_-\|adenylosuccinate-synthetase	unknown	unknown	gnl\|CDD\|197875
NZ_CP034967.1\|WP_164536283.1\|1211784_1214265_-\|alpha-glucosidase	unknown	unknown	gnl\|CDD\|236653
NZ_CP034967.1\|WP_005334936.1\|1208822_1209203_-\|autonomous-glycyl-radical-cofactor-GrcA	unknown	unknown	gnl\|CDD\|213978
NZ_CP034967.1\|WP_164536282.1\|1210384_1211062_+\|uracil-DNA-glycosylase	unknown	unknown	gnl\|CDD\|235376
NZ_CP034967.1\|WP_005334938.1\|1205284_1206085_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|225464
NZ_CP034967.1\|WP_005362209.1\|1201519_1202779_+\|glutamyl-tRNA-reductase	unknown	unknown	gnl\|CDD\|234592
NZ_CP034967.1\|WP_164536279.1\|1203980_1204832_+\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	unknown	unknown	gnl\|CDD\|274634
NZ_CP034967.1\|WP_005334937.1\|1206267_1207122_+\|3-deoxy-8-phosphooctulonate-synthase	unknown	unknown	gnl\|CDD\|235363
NZ_CP034967.1\|WP_005353887.1\|1207423_1208704_+\|dicarboxylate/amino-acid:cation-symporter	unknown	unknown	gnl\|CDD\|234968
NZ_CP034967.1\|WP_164536276.1\|1199966_1200815_-\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	unknown	unknown	gnl\|CDD\|234731
NZ_CP034967.1\|WP_005334960.1\|1195737_1196334_-\|aminoacyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|235457
NZ_CP034967.1\|WP_005343846.1\|1198656_1199604_-\|ribose-phosphate-pyrophosphokinase	unknown	unknown	gnl\|CDD\|234929
NZ_CP034967.1\|WP_164536281.1\|1209574_1210315_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270422
NZ_CP034967.1\|WP_164536277.1\|1200814_1201393_-\|outer-membrane-lipoprotein-LolB	unknown	unknown	gnl\|CDD\|377063

Protein	Function_ID	Function_description	E-value
NZ_CP034967.1\|WP_042054529.1\|1214460_1215261_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	4.99054e-21
NZ_CP034967.1\|WP_005362195.1\|1211132_1211684_+\|hemerythrin	gnl\|CDD\|226454	COG3945, COG3945, Uncharacterized conserved protein [Function unknown].	6.02121e-19
NZ_CP034967.1\|WP_005347798.1\|1215272_1215809_-\|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein	gnl\|CDD\|176643	cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in bacterial and archaea. Members here include Escherichia coli YBHB and YBCL which are thought to regulate protein phosphorylation as well as Sulfolobus solfataricus SsCEI which inhibits serine proteases alpha-chymotrypsin and elastase. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer). In a few of the bacterial members present here the dimerization interface is proposed to form the ligand binding site, unlike in other PEBP members.	7.25808e-61
NZ_CP034967.1\|WP_164536275.1\|1196552_1198541_-\|bifunctional-metallophosphatase/5'-nucleotidase	gnl\|CDD\|277354	cd07409, MPP_CD73_N, CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	3.33031e-80
NZ_CP034967.1\|WP_164536280.1\|1204888_1205272_+\|SirB2-family-protein	gnl\|CDD\|377264	pfam04247, SirB, Invasion gene expression up-regulator, SirB. SirB up-regulates Salmonella typhimurium invasion gene transcription. It is, however, not essential for the expression of these genes. Its function is unknown.	1.17302e-20
NZ_CP034967.1\|WP_164536278.1\|1202830_1203919_+\|peptide-chain-release-factor-1	gnl\|CDD\|234801	PRK00591, prfA, peptide chain release factor 1; Validated.	0
NZ_CP034967.1\|WP_005347796.1\|1216005_1217262_-\|adenylosuccinate-synthetase	gnl\|CDD\|197875	smart00788, Adenylsucc_synt, Adenylosuccinate synthetase. Adenylosuccinate synthetase plays an important role in purine biosynthesis, by catalyzing the GTP-dependent conversion of IMP and aspartic acid to AMP. Adenylosuccinate synthetase has been characterized from various sources ranging from Escherichia coli (gene purA) to vertebrate tissues. In vertebrates, two isozymes are present - one involved in purine biosynthesis and the other in the purine nucleotide cycle. The crystal structure of adenylosuccinate synthetase from E. coli reveals that the dominant structural element of each monomer of the homodimer is a central beta-sheet of 10 strands. The first nine strands of the sheet are mutually parallel with right-handed crossover connections between the strands. The 10th strand is antiparallel with respect to the first nine strands. In addition, the enzyme has two antiparallel beta-sheets, comprised of two strands and three strands each, 11 alpha-helices and two short 3/10-helices. Further, it has been suggested that the similarities in the GTP-binding domains of the synthetase and the p21ras protein are an example of convergent evolution of two distinct families of GTP-binding proteins. Structures of adenylosuccinate synthetase from Triticum aestivum and Arabidopsis thaliana when compared with the known structures from E. coli reveals that the overall fold is very similar to that of the E. coli protein.	2.59858e-174
NZ_CP034967.1\|WP_164536283.1\|1211784_1214265_-\|alpha-glucosidase	gnl\|CDD\|236653	PRK10137, PRK10137, alpha-glucosidase; Provisional.	0
NZ_CP034967.1\|WP_005334936.1\|1208822_1209203_-\|autonomous-glycyl-radical-cofactor-GrcA	gnl\|CDD\|213978	TIGR04365, Autonomous_glycyl_radical_cofactor, autonomous glycyl radical cofactor GrcA. This small protein, previously designated YfiD in E. coli, is closely homologous to pyruvate formate_lyase (PFL) in a region surrounding the stable glycyl radical that is prepared by the action of pyruvate formate-lyase activase, a radical SAM enzyme. When damage at the site of this radical breaks the main chain of PFL, this protein acts as a spare part that reintroduces the needed stable glycyl radical. Cutoffs for this model are set to exclude a set of closely related phage proteins that appear to have a corresponding function.	6.45315e-80
NZ_CP034967.1\|WP_164536282.1\|1210384_1211062_+\|uracil-DNA-glycosylase	gnl\|CDD\|235376	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional.	2.85695e-150
NZ_CP034967.1\|WP_005334938.1\|1205284_1206085_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|225464	COG2912, COG2912, Uncharacterized conserved protein [Function unknown].	4.40346e-57
NZ_CP034967.1\|WP_005362209.1\|1201519_1202779_+\|glutamyl-tRNA-reductase	gnl\|CDD\|234592	PRK00045, hemA, glutamyl-tRNA reductase; Reviewed.	0
NZ_CP034967.1\|WP_164536279.1\|1203980_1204832_+\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	gnl\|CDD\|274634	TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. [Protein fate, Protein modification and repair].	1.3322e-123
NZ_CP034967.1\|WP_005334937.1\|1206267_1207122_+\|3-deoxy-8-phosphooctulonate-synthase	gnl\|CDD\|235363	PRK05198, PRK05198, 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional.	0
NZ_CP034967.1\|WP_005353887.1\|1207423_1208704_+\|dicarboxylate/amino-acid:cation-symporter	gnl\|CDD\|234968	PRK01663, PRK01663, C4-dicarboxylate transporter DctA; Reviewed.	0
NZ_CP034967.1\|WP_164536276.1\|1199966_1200815_-\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	gnl\|CDD\|234731	PRK00343, ipk, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional.	0
NZ_CP034967.1\|WP_005334960.1\|1195737_1196334_-\|aminoacyl-tRNA-hydrolase	gnl\|CDD\|235457	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional.	6.57579e-107
NZ_CP034967.1\|WP_005343846.1\|1198656_1199604_-\|ribose-phosphate-pyrophosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	0
NZ_CP034967.1\|WP_164536281.1\|1209574_1210315_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270422	cd13704, PBP2_HisK, The periplasmic sensor domain of histidine kinase receptors; the type 2 periplasmic binding fold protein. This subfamily includes the periplasmic sensor domain of the histidine kinase receptors (HisK) which are elements of the two-component signal transduction systems commonly found in bacteria and lower eukaryotes. Typically, the two-component system consists of a membrane-spanning histidine kinase sensor and a cytoplasmic response regulator. The two-component systems serve as a stimulus-response coupling mechanism to enable microorganisms to sense and respond to changes in environmental conditions. Extracellular stimuli such as small molecule ligands and ions are detected by the N-terminal periplasmic sensing domain of the sensor kinase receptor, which regulate the catalytic activity of the cytoplasmic kinase domain and promote ATP-dependent autophosphorylation of a conserved histidine residue. The phosphate is then transferred to a conserved aspartate in the response regulator through a phospho-transfer mechanism, and the activity of the response regulator is in turn regulated. The sensor domain belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space through their function as an initial high-affinity binding component. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.10623e-22
NZ_CP034967.1\|WP_164536277.1\|1200814_1201393_-\|outer-membrane-lipoprotein-LolB	gnl\|CDD\|377063	pfam03550, LolB, Outer membrane lipoprotein LolB.	7.6429e-57

>NZ_CP034967.1|WP_005334938.1|1205284_1206085_+|tetratricopeptide-repeat-protein
MLHIDEWTDFEAHDITELALSVSDEIYGSVEEGMRELNLLDEWLDEQIEEGTCDEVRQQLLQGFYHSLGFHGDWQDYFSANNCDLNQVLVQRKGIPVSLGILIIQLGRKLGLDVEGICFPGHFLVSFAGGEGEVYVDPFTGDELSLARIELLLRGALGDLATLTPDYLQPSGQWEIIERLLNVSKGALLREDRMPEALRCSELLLRMKPGDPLETRDRGFIYEQLDCPRQAADDFEYFIEQCPDDPVADVLKVQLAALDLSPKPLH
>NZ_CP034967.1|WP_164536280.1|1204888_1205272_+|SirB2-family-protein
MVFVLKHLHLTLIGGAVLMFMLRFYWVQTATGRAYSAPVMKVSGWLNGLVVLSGVLLCMVLDLNPLNNVTPWLSEKLMAILVLVFLAAMALRLAKSNLVRWCSFLGALGWIYFIAKLAVLKQTSVFG
>NZ_CP034967.1|WP_164536279.1|1203980_1204832_+|peptide-chain-release-factor-N(5)-glutamine-methyltransferase
MQIQQARAHIMTVLAGGESPRADADVLLCHLLDCRRSYLMTWPERELDAAQQATLQTWLARRLNGEPIAHLVGEREFWSLPLKVSPATLIPRPDTEVLVEQALAKIPQGPCAVLDLGTGTGAIALAIKSERPELDVWAVDRMADAAALARENSVALGLPIEVRDGSWFEPLGEPDRDNTPRFAVIVSNPPYIDGADPHLEQGDVRFEPRSALVADDAGLADIRHIVAHAPAYLLADGWLLLEHGWDQGEAVRQLLRDGGYREVATVRDYGDNDRVTLGLCPLR
>NZ_CP034967.1|WP_164536278.1|1202830_1203919_+|peptide-chain-release-factor-1
MNPSLIRKLEGLIERHEEVQAMLGEPDVVSDQDRYRALTREYAQLEDIVHAFQRYRQAQDDLDTTQMMLEEDDADLREMAQEELPLAKANLEALEQELQLMLLPKDPKDDNNCYLEIRAGAGGDEAAIFAGDLFRMYSRFAERQGWRVSIVSCNDGEYGGYKEVIAKIDGERVYGRLKFESGGHRVQRVPETESQGRVHTSACTVAVLPEVPEAEQIEINPADLKIDTFRASGAGGQHVNKTDSAIRITHLPTGLVVECQDERSQHKNRAKAMSVLSARLQAAEDERHRAAEQSTRRNLVGSGDRSERIRTYNYPQGRLSEHRINLTLYRLSEILEGDLDCVITPLVQEYQADQLASLAENN
>NZ_CP034967.1|WP_005362209.1|1201519_1202779_+|glutamyl-tRNA-reductase
MSLLALGINHNTASVALRERVAFGPDCIDRALRELVSQPGVSEAVIVSTCNRTELYCNLEEERQEQVLRWLQQFHGLDAAELVTAIYQHHDEEAVRHLMRVACGLDSLVLGEPQILGQIKQSYAHAQQAESVKGALERLFQKSFSVAKRVRTDTEIGASAVSVAFAAVSLGRRIFSDLSQTKVLLVGAGETIELVARHLREQNVTKMMVANRTLQRAQTLAAEFGAQVMTLEEIPDYLHEADIVISSTASPLPIIGKGMVERALKARRFKPMFLVDIAVPRDIEAEVDELSDAYLYTVDDLQGIIEQNLETRKRAAAQAEVIVQEERDEFMGWYRGQSSVDLIRDYRHQSQQVADEELQRALLALAQGESAEQALKAMAHRLTNKLIHAPTQALRQAASQGDQSELSRLRQALGLSQEP
>NZ_CP034967.1|WP_164536277.1|1200814_1201393_-|outer-membrane-lipoprotein-LolB
MLLRIFTLTCLLLLAGCATTQPQRDQVNWNQERIRLEQLTHWQLSGKMAIITPQQKGSARLNWQQDGEDYRLNLTSLIGTSILELSRSKGEITLLDSDGNRHQSQDAEALIYQLTGWNIPVAGLPEWIKGLPGQAEFELNPDSSLASVRDGQWQIVYGDYRDQDGYRLPHQLTMTGQNSRLKLQINQWTLAR
>NZ_CP034967.1|WP_164536276.1|1199966_1200815_-|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase
MASTRWPAPAKLNLFLHVNGRRPDGYHELQTLFIFLNHSDWLEFEVIPNSDTLTLSPAIPGVPDEQNLIIRAARLLQATLPSPQGAHIRLEKVLPMGGGIGGGSSDAATTLVALNHLWQAGLSEDELAALGVQLGADVPVFVRGKAAFAEGVGEQLQPVELPDAWYLVLKPDCHVATAAVFQDPDLPRATPKMALDNLLEGEWKNDCESLVKKRHPEVANALGWLLEYAPSRMTGTGACVFAQFEDEVTAREVLACVPKGLDGFVAKGENISPLFSTLQQFK
>NZ_CP034967.1|WP_005343846.1|1198656_1199604_-|ribose-phosphate-pyrophosphokinase
MPDMKLFAGNATPELAQKIADRLFIKLGNAAVGRFSDGEISVQINENVRGGDIFIIQSTCAPTNDNLMELIVMVDALRRASAGRITAVIPYFGYARQDRRVRSARVPITAKVVADFLSSVGVDRVLTVDLHAEQIQGFFDVPVDNVFGSPVLLEDMKSKNLESPVVVSPDIGGVVRARAIAKLLDDTDIAIIDKRRPRPNVSQVMHLIGDVAGRDCIIVDDMIDTGGTLCKAAEALKERGAKRVFAYATHPVFSGSAVENIKNSVIDELIITDSIPLTAEMKAVGKVKQLTLSTVLAEAIRRISNEESISAMFEH
>NZ_CP034967.1|WP_164536275.1|1196552_1198541_-|bifunctional-metallophosphatase/5'-nucleotidase
MNCLRPLLLATLTSALFACQPAKENPPFVLTLAHMNDTHSQFDPVNAEIKGQIFAQQGETDTLYTRFGGYPRLLTMAKAYQADALAKNQPLLLLHGGDAWQGSGYFKLNEGMANAELLSQFGLDAMALGNHEFDLDNQKLARFIEGVNFPVLAANLDTNADPALSKADNLKPFVVYAFDGNQKSPVTDLDNLPQGKQLVAVIGLVLEDMGNIAPNVGKLRFGKEVASAQATVDMLQAKGIHQIVALTHIGNERDLALATKVNGLDAIVGGHSHSLLGDFRNIGWGKTGDYAKLVTNPDGIGKTCVVQAGSYAQAIGLAQVTFDSQGQVTDCQGHNSLLASRDFFADAARKQALDDARSKEASQFVDNQPNLVTVDEDPRLRGIIDSHYKPALEKAYGPVIGTIPEQLQNARRPGDNGSDSHGSDVAPLVAEGEFYWANTPAVQALTGGPVDFSLVAVGGVRADLPAGEWREGDSALTLLPFKNQLSVLTLTGAEVRALLTETITATLPTSAHAGKFPYGGHLRYTFQETDAGKAGTLTQLQHKTASGEWQDLVDSQHYRVVMNAYSANGNDGWQTLANAQRHQSERVDIASVNGKLTAFPVLKVAQNGELLSAVYAPGQALDCKASGVDCGTDAASFVEYVRDARPSLTALDEETVTLLRAK
>NZ_CP034967.1|WP_005334960.1|1195737_1196334_-|aminoacyl-tRNA-hydrolase
MTSEIKLIVGLGNPGPEYAKTRHNAGAWYVEQLARWHNVSLREEPKFFGHTARILVEGQDVRLLIPNTYMNLSGKAVAALARFYQIEPEAMLVAHDELDLPPGIAKFKQGGGHGGHNGLKDIIAKMGNNNNFFRLRLGIGHPGSKEQVAGFVLTKAPSSEQNLIDAALDESLRATDILFKQDMTKAMNRLHSFKAEKG
>NZ_CP034967.1|WP_005334937.1|1206267_1207122_+|3-deoxy-8-phosphooctulonate-synthase
MEQKNIKINQIDVANDKPFVLFGGMNVLESRDMAMAVCEKYVEVTSKLGIPFVFKASWDKANRSSIHSYRGPGLEEGMKIFQELKATFGMPVISDLHEPHQAKPVAEVVDVIQLPAFLARQTDLVEAMARTGNVINIKKPQFLSPSQMKNITDKFEECGNDQLILCERGANFGYDNLVVDMLGLGVMKKSTGGYPVIFDVTHSLQCRDPLGAASGGRREQVTELARAGMAVGLAGLFIESHPDPKIARCDGPSALPLEKLEGFLKQMKAIDDLIKGFEPLDTSA
>NZ_CP034967.1|WP_005353887.1|1207423_1208704_+|dicarboxylate/amino-acid:cation-symporter
MRKKLFSSLYFQVLLAITLGVFLGHVYPELGADMKPLGDGFVKLIKMIIAPVIFCTVVTGIAGMESMKAVGKTGAIALLYFEVVSTIALIIGLCVVNLLQPGAGMNVDPAALDASAISAYAEQAKSQGIIAFLLDIIPGSVIGAFASGNILQVLLFAVLFGFSLHHIGEKGQVIFGVIDSFSKVIFGIINMIMRLAPVGAFGAMAFTIGKYGVGSLVQLGQLIACFYLTCLFFIFIVLGSIAKASGFSILRFISYIREELLIVLGTSSSESVLPRMLDKMEKLGCQKSVVGLVIPTGYSFNLDGTSIYLTMAAIFIAQATNTPLDLFQQITLLVVLLISSKGAAGVTGSGFIVLAATISAVGHLPLAGLALILGIDRFMSEARALTNLIGNGVATVVVAKYCKQLDEKKMDAVLGGKVGQLEADRA
>NZ_CP034967.1|WP_005334936.1|1208822_1209203_-|autonomous-glycyl-radical-cofactor-GrcA
MIKGIQITQAANTALLNSFWLLDEEKQQARCICVKGDAFAADQEVQLADLGQFEYRELPVQAEPAVEGGQHLNVNVLRRETLEDAIENPEKYPQLTIRVSGYAVRFNALTPEQQRDVVTRTFTQSL
>NZ_CP034967.1|WP_164536281.1|1209574_1210315_+|transporter-substrate-binding-domain-containing-protein
MNNGWRKWAWLALFCCWASSVAVRAETVRIAVGEWPPYISEALPNQGFLCEVVRQAFAEEGLDVSFHFYSWAEAYRLTLEGRYVVTMPWFRSREREQLFYLSASLGHFTTRLMTLTGTPAVNLGELKHEPVGVTRGYFYGDGFAARQAGLNLEWSDSDEESMGKLIDGRIHYLVMDEQVAQTLFQQALVRHPQSLSLTGAADPIWSQPGYLLMRKADPEARRLMLLFNSGLRKLERSGRLARLWKA
>NZ_CP034967.1|WP_164536282.1|1210384_1211062_+|uracil-DNA-glycosylase
MLTWSDVIGSEKEQDYFKSTLATVRAEREAGKVIYPPATDVFNAFKLTELDQVKVVILGQDPYHGPNQAHGLCFSVLPGVRTPPSLVNIYKEMQRDLPGFVTPNHGFLESWAKQGVLLLNTVLTVQAGQAHSHAHLGWETFTDRVIEQINASCQGMVFLLWGAHAQKKGRFIDRQRHYVLTAPHPSPLSAHRGFIGCGHFSETNRLLEQQGKSPIEWKSVCIPLD
>NZ_CP034967.1|WP_005362195.1|1211132_1211684_+|hemerythrin
MLSSLHKDHLNIARLLELLKHKLAAIRAEEPISYFLVRDVIDYLREVSDKYHHPKEDLIYDYYLKYRVVEGEVANRLQEEHVKLLEAGADLKEMVEMILMDAVIPLDQFTTKLERFVELQEAHMNYEEGVIFPHLRDSLTEDDWRHLEQNWQNRAIGDPLFGAEVSQHFQALAKRLSLPLTNG
>NZ_CP034967.1|WP_164536283.1|1211784_1214265_-|alpha-glucosidase
MFRKTLLSVALGTALFGLTACNDNQTESSTVAKPEQAIQYKDVIDRRGTPTQFRDFDSYSNLKYNPLLDLGAWHGFLLPASDKEWGGFTGPMVISEEYSLFFASELDKLTLSDASGRPFPLTSARKQEAYAIPGALVQRFEFEPFTLELELRYGDARTALIRTRLINQTDAPLTLNLNWQGELLNQWDAKDTIASKYPGWTRTISESDKGIEFQFGKLRSTWNIMQSGSARYRIDRTLPSRTTLDQKTLGYQSDASITLATKGSEDIYTLQSYLHSADDASRHQQSRQALLADPASYFADSIRRWEGYLANGLSNQGIPESERRIAVKAMETLNGNWRSPAGAILHDGVTPSNTARWFDGVWAWDSWKHAYAMAHFNPEVAKNNVRAMYDYQVQPDDPVRPQDAGMVIDAIFYNKQADRGGDGGNWNERDTKPPLSAWAIWEIYSATKDKAFIAEMYPKLQAYHDWWYRARDNNRNGIIEYGATKHVEHNDEYGNITFKVQYSNGIPAGLDLSSCTSEGDGWYACAGMPLYRQVLNVGGYSDMDIGAQHGAGWESGMDNAARFGFIEPGQLQRYADKTYGGDLAKARQDWNVAFFENHQDNGDLIGFSIDQESVELNAFLAKEKRILADMADLLGKPNDASRYRDGATQLAGYINSCMFDEASGFYYDRQIAQGDVADGNGCVGKLLTARGRGPEGWSPLWAEVADKEKAARVREVMLNAQEFNTKIPLGTAALTNPAYDPNIYWRGRVWLDQFYFGVKGLENYGYRSDAEALVNKLFNNAEGLAGSGPIRENYNPETGAMQGASNFSWSSAHLYMLYRNFLKPQA
>NZ_CP034967.1|WP_042054529.1|1214460_1215261_-|AraC-family-transcriptional-regulator
MSTPLLQQSHYLGIRQQPLHRVLIYAPTLIWVTQGSKQLWWRERRLSFDRERWLLIPAGHQLTFVNQPEQGKFRSHAITLLTPPPPEWLAESAPSHADLEEPAVKVTPGLAFCFELISTMAERGLSEATQAELLRGFYAELRAANALGLLFPASTMTLAERLARYLAVEPGIDHTLEAVAPHFSMSRASMVRKLAAEGRSFRQLLAQVRMSHALNLLQQGLTPLEVALACGYDSPSRFAARFKQEFGLTPHQYLHTCPARLASNEK
>NZ_CP034967.1|WP_005347798.1|1215272_1215809_-|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein
MKLLKQSALLPLLCLTAMPAFAMTLKSTDIHEGQLMDKQFSFNGFGCSGDNHSPQLSWQDLPAGTKSVAITAYDPDAPTGSGWWHWLVVNLPATQSELASNASGKLKQGLEIRTDFGNQGYGGPCPPAGHGMHRYQFTAWALPHDLEVKADTPPAMVGYMLNSMALGKATLTATFVTP
>NZ_CP034967.1|WP_005347796.1|1216005_1217262_-|adenylosuccinate-synthetase
MSSIVVVGANWGDEGKGRIVDYLAGQAGASIRFQGGNNAGHTVVNDLGTFKLHQVPSGVFNPDCLVVLGPGMVISPEKLTVELEEVKASGVTPKLAISDRATLCLPLHALEDTLEEQRLGDGAYGSTRQGIAPAYGDRVMKKAILVGWLKQPDVLVERIQFMLDWKLPQMKAIYPSFEFTQTAQEMADWLLEVSAPWIDAVCNVSMPLKALQAEGKTLLFEAQLGAGRDLIYGEYPWVTSSHVSGAYAGIGGGLPGLRPERVIAVAKAFSSSVGTGTLLTAMENQDEFRKITNEFGATTGRPRDVGYFDAVATKNGVELQAATEVALTKLDCLTGLPDLKICVAYEGAHTENPIWPQTAALKPVYEQMESWSEDITGCRTFEELPRAAQQYVLRIEELLGVPVPMVSVGPGRDEMILR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP034967_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP034967_3

1379300-1379412

Orphan

Consensus_repeat	Method
TGTCCAGCCAGCTCAGGCCGACTCCCGCTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP034967_3

>merge|NZ_CP034967|3|1379300-1379412|CRISPRCasFinder
TGTCCAGCCAGCTCAGGCCGACTCCCGCTTCTGCGGTTTGCAGGTGAGCGGTGATGATATGGCGGGTTGGGACGAGCTCGGGCTGTCCAGCCAGTTCAGGCCGACTCCCGCTT

>NZ_CP034967|3|3|1379300-1379412|CRISPRCasFinder
TGTCCAGCCAGCTCAGGCCGACTCCCGCTT	CTGCGGTTTGCAGGTGAGCGGTGATGATATGGCGGGTTGGGACGAGCTCGGGC
TGTCCAGCCAGTTCAGGCCGACTCCCGCTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP034967.1\|WP_164536364.1\|1382371_1383562_+\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|224090
NZ_CP034967.1\|WP_164536363.1\|1378925_1379189_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP034967.1\|WP_164536365.1\|1383654_1384077_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|341115
NZ_CP034967.1\|WP_164536366.1\|1384076_1385027_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP034967.1\|WP_005353611.1\|1371992_1373399_-\|hexose-6-phosphate:phosphate-antiporter	unknown	unknown	gnl\|CDD\|236564
NZ_CP034967.1\|WP_005334586.1\|1387004_1387271_-\|type-III-secretion-system-export-apparatus-subunit-SctS	unknown	unknown	gnl\|CDD\|227131
NZ_CP034967.1\|WP_005334588.1\|1385164_1386223_-\|type-III-secretion-system-export-apparatus-subunit-SctU	unknown	unknown	gnl\|CDD\|227130
NZ_CP034967.1\|WP_164536367.1\|1386219_1387008_-\|type-III-secretion-system-export-apparatus-protein-SctT	unknown	unknown	gnl\|CDD\|227129
NZ_CP034967.1\|WP_005334611.1\|1371467_1371773_-\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|224362
NZ_CP034967.1\|WP_164536361.1\|1377009_1378305_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP034967.1\|WP_164536362.1\|1378388_1378871_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP034967.1\|WP_164536359.1\|1370700_1371468_-\|PTS-transporter-subunit-EIIA	unknown	unknown	gnl\|CDD\|334031
NZ_CP034967.1\|WP_164536368.1\|1387922_1388849_-\|YscQ/HrcQ-family-type-III-secretion-apparatus-protein	unknown	unknown	gnl\|CDD\|235891
NZ_CP034967.1\|WP_164536360.1\|1373976_1375887_-\|PTS-transporter-subunit-EIIA	unknown	unknown	gnl\|CDD\|182066
NZ_CP034967.1\|WP_005334585.1\|1387272_1387926_-\|type-III-secretion-system-export-apparatus-protein-SctR	unknown	unknown	gnl\|CDD\|227128
NZ_CP034967.1\|WP_139493458.1\|1380712_1382284_+\|PTS-maltose-transporter-subunit-IICB	unknown	unknown	gnl\|CDD\|182245
NZ_CP034967.1\|WP_164536357.1\|1369181_1369673_-\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239647
NZ_CP034967.1\|WP_005353619.1\|1367917_1369024_-\|tRNA-2-thiouridine(34)-synthase-MnmA	unknown	unknown	gnl\|CDD\|234664
NZ_CP034967.1\|WP_164536358.1\|1369672_1370596_-\|23S-rRNA-pseudouridine(2457)-synthase-RluE	unknown	unknown	gnl\|CDD\|211334
NZ_CP034967.1\|WP_164537913.1\|1388845_1389388_-\|type-III-secretion-system-needle-length-determinant	unknown	unknown	gnl\|CDD\|274172

Protein	Function_ID	Function_description	E-value
NZ_CP034967.1\|WP_164536364.1\|1382371_1383562_+\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|224090	COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism].	1.12125e-154
NZ_CP034967.1\|WP_164536357.1\|1369181_1369673_-\|NUDIX-hydrolase	gnl\|CDD\|239647	cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	1.89545e-65
NZ_CP034967.1\|WP_005353611.1\|1371992_1373399_-\|hexose-6-phosphate:phosphate-antiporter	gnl\|CDD\|236564	PRK09556, uhpT, hexose-6-phosphate:phosphate antiporter.	0
NZ_CP034967.1\|WP_005334586.1\|1387004_1387271_-\|type-III-secretion-system-export-apparatus-subunit-SctS	gnl\|CDD\|227131	COG4794, EscS, Type III secretory pathway, component EscS [Intracellular trafficking and secretion].	2.71579e-27
NZ_CP034967.1\|WP_005334588.1\|1385164_1386223_-\|type-III-secretion-system-export-apparatus-subunit-SctU	gnl\|CDD\|227130	COG4792, EscU, Type III secretory pathway, component EscU [Intracellular trafficking and secretion].	0
NZ_CP034967.1\|WP_164536367.1\|1386219_1387008_-\|type-III-secretion-system-export-apparatus-protein-SctT	gnl\|CDD\|227129	COG4791, EscT, Type III secretory pathway, component EscT [Intracellular trafficking and secretion].	7.98521e-75
NZ_CP034967.1\|WP_005334611.1\|1371467_1371773_-\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|224362	COG1445, FrwB, Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism].	2.24429e-39
NZ_CP034967.1\|WP_164536362.1\|1378388_1378871_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.87975e-10
NZ_CP034967.1\|WP_164536359.1\|1370700_1371468_-\|PTS-transporter-subunit-EIIA	gnl\|CDD\|334031	pfam00359, PTS_EIIA_2, Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2.	5.67863e-19
NZ_CP034967.1\|WP_164536368.1\|1387922_1388849_-\|YscQ/HrcQ-family-type-III-secretion-apparatus-protein	gnl\|CDD\|235891	PRK06933, PRK06933, YscQ/HrcQ family type III secretion apparatus protein.	8.98312e-142
NZ_CP034967.1\|WP_164536360.1\|1373976_1375887_-\|PTS-transporter-subunit-EIIA	gnl\|CDD\|182066	PRK09765, PRK09765, PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional.	6.34905e-132
NZ_CP034967.1\|WP_005334585.1\|1387272_1387926_-\|type-III-secretion-system-export-apparatus-protein-SctR	gnl\|CDD\|227128	COG4790, EscR, Type III secretory pathway, component EscR [Intracellular trafficking and secretion].	1.91005e-117
NZ_CP034967.1\|WP_139493458.1\|1380712_1382284_+\|PTS-maltose-transporter-subunit-IICB	gnl\|CDD\|182245	PRK10110, PRK10110, PTS maltose transporter subunit IICB.	0
NZ_CP034967.1\|WP_164536365.1\|1383654_1384077_-\|hypothetical-protein	gnl\|CDD\|341115	cd17032, T3SC_IA_SycT-like, Class IA type III secretion system chaperone protein, similar to Yersinia enterocolitica SycT. This family includes type III secretion system (T3SS) chaperone proteins similar to Yersinia enterocolitica SycT and similar proteins. In Y. enterocolitica, a food-borne pathogen causing gastroenteritis and mesenteric lymphadenitis, chaperone SycT promotes translocation of effector YopT (Yersinia outer protein T), a cysteine protease that inactivates the small GTPase RhoA of targeted host cells by cleaving its C-terminal, prenylated cysteine, thereby releasing the GTPase into the host cytosol.	3.7315e-25
NZ_CP034967.1\|WP_005353619.1\|1367917_1369024_-\|tRNA-2-thiouridine(34)-synthase-MnmA	gnl\|CDD\|234664	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed.	0
NZ_CP034967.1\|WP_164536358.1\|1369672_1370596_-\|23S-rRNA-pseudouridine(2457)-synthase-RluE	gnl\|CDD\|211334	cd02566, PseudoU_synth_RluE, Pseudouridine synthase, Escherichia coli RluE. This group is comprised of bacterial proteins similar to E. coli RluE. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. Escherichia coli RluE makes psi2457 in 23S RNA. psi2457 is not universally conserved.	5.97554e-89
NZ_CP034967.1\|WP_164537913.1\|1388845_1389388_-\|type-III-secretion-system-needle-length-determinant	gnl\|CDD\|274172	TIGR02514, Yop_proteins_translocation_protein_P., type III secretion system needle length determinant. Members of this family include YscP of the Yersinia type III secretion system and equivalent proteins in other animal pathogen bacterial type III secretion systems. The model describes the conserved C-terminal region. N-terminal regions are poorly conserved and variable in length with some low-complexity sequence.	4.29855e-49

>NZ_CP034967.1|WP_164536363.1|1378925_1379189_-|hypothetical-protein
MSNPHDQNPPSEIHRCDKCRERTRHIVVLAARDHSQDIMPKDPCKAFWQAFTSSSITNWAFGETLAYQTPHVKHLICERCGEKFLEY
>NZ_CP034967.1|WP_164536362.1|1378388_1378871_-|GNAT-family-N-acetyltransferase
MKCVEMAPHQLPLALLLEADPAEQRIAAYLTGAWGFAALAGSNGNEVVGACVVGLVGEQTAEIFNIAVAPNCQQQGIGSGLLRFVLTSLAGKGVYRVELGTGSFGHQLTYYQRHGFRVDTVVKDHFLIHYPEPLMEHGIQHKDMLRLSLVLKPNTPLFNG
>NZ_CP034967.1|WP_164536361.1|1377009_1378305_+|hypothetical-protein
MASPLEDLDELTLRCRDEKAREHIFEAVASYRSGAFRAAIVTTWIAVCFDFIEKLRELALAGDKEAEQQVQSIEKIHRTNDITAALKFEKDLLSLAKDKFSLLTPIEYEDLKRLQDDRNRCAHPSLSSDDQAYSPPAELARLHIHSAVTHLLQHPPVQGKYALERLLKEIDSEYFPTSEMETKKVFSVGPLRRPRDSLVRSLVIVLCKSILSDSEGWKKRNRRVAAIKAVSSLHYTPSSKAKKDTLPTLFRGIEDKDMHKAINFLRNLPESWEYLEEDIHQRLKKFVRTLDTDNFAQYIDFLIEYQPLRSQAKQRLERASKRDLKEVWLFFGTPPEVLDKIIDFYFQSDSYDEANDWAKELSQISNEFSENQIRKLLVGVADNSQITGSFQLGTLINNLRIGNKIPEEEFEALLQENGLDEHCLESQDNVL
>NZ_CP034967.1|WP_164536360.1|1373976_1375887_-|PTS-transporter-subunit-EIIA
MITTLINEHLINLDLKATRKEEVFTEMARLLVAQGKVSDEQQFVKDLWAREELDNTGFEEGVALPHAKSAAVSTPAVAIGISRNGIDYGAEDGKPSKLFFMIASPAGGANHHIEVLAELSAKLIEEGFIDALLAAKTPADALALLLAKKEEAAAAPAADKGLIIGVTGCPAGIAHTYLAAESLERAAKELGYEVKVETNGSIGVKNSPTADEIARAAAIVVACDKQVDMARFAGKPLIKTGVKAPIKDGKGLIEQALKAPAYVADKDEKKGDEKRASGGSSDLYRYLMNGVSHMIPFVVTGGLLIALSLAIGGNPTPSGMQIPEGSMWNQILNVGVAAFTLMIPILAGYIAYAIGDRPALAPGFIGGWIANNGSFYGADAGTGFIGAIIAGLLVGYLVRWIATRQYHKMVQPLVPILIAPIVGSLFIAAVFIFIIGAPIADMMTGLNAMLLSMSGGSLVLLGIVLGGMAGFDMGGPVNKVAFLFSVGMIASGQTQFMGAMACAIPAAPLGMSLATVLGRKLGIFDESEIEAGKAAGAMGLVGISEGAIPFAARDPLAVIPANVLGSMTAAVMAFLFGITNSVAHGGPIVALLGAVNKPLLALLCMICGAIVTGVVAVALKKLRVKKSDEVTLAKAA
>NZ_CP034967.1|WP_005353611.1|1371992_1373399_-|hexose-6-phosphate:phosphate-antiporter
MLKLLQQVRVPTLDLPVEARRKLWFKPFMQSYLVVFIGYLTMYLIRKNFNIAQNDMIQEYGLSMTELGMIGLGFSITYGVGKTIVSYYADGKNTKQFLPLMLILSALCMLGFSASMGGTGFSLYFMIFFYALSGFFQSCGGSCSYSTITKWTPRNKRGTYLGMWNLSHNVGGAGAAGVALFGANYLFDGNVLGMFIFPSIIALIVGFIGLRFGSDSPEAYGLGKVEELFDEVASEEDIATEEQQLTKWQIFVKYVLLNKVIWLLCFANIFLYVVRIGIDQWSTVYAHQELGFSKDVAIQGFTFFEVGALVGTLMWGYLSDLANGRRGLVACVALALIIATLGLYQHATTQFMFLGSLFTLGFLVFGPQLLIGVAAVGFVPKQGISVADGVKGTFAYLIGDSFAKLGLGMIADGTPIFGLTGWTGTFAALDIAAAACLVLMGCVAVAEERKIRRIKRELKAAELAAQTA
>NZ_CP034967.1|WP_005334611.1|1371467_1371773_-|PTS-sugar-transporter-subunit-IIB
MKIVAVTACPTGIAHTYMAADALQKAATGLGLKIKVETQGAMGMENMLTARDIASADLVLIASDIEIEQKERFLGCTIHQVRLETVLLDANAVLKALPIPA
>NZ_CP034967.1|WP_164536359.1|1370700_1371468_-|PTS-transporter-subunit-EIIA
MLTREITFYCQQGLSITQAKQLNRLAGMFKSTIRCANLTRRQTVAASNQLSLLTLATQPGDLCQLQIEGCDAELAHMAFTCWCGELGQPLVRPRTAALAELRLANALPDYHFALRQLAYSPKPLTKTEALEHLIDLLPAELVTDRATLTAAVERREQVSATIIRPGLAMPHVLSEGISQPALTLLNCKEPIEWDSQIGPVQTIILLAVPVGSGRETLRPLTRLAQAMIDDVVSHALLLAGSAPARQAIVIESLLS
>NZ_CP034967.1|WP_164536358.1|1369672_1370596_-|23S-rRNA-pseudouridine(2457)-synthase-RluE
MKSPRSRLSVSRAPRDNAPRTAAKPAAPRHASPRKPELAPADRKLLLLNKPYMVLCQFTDEAGRETLKDYIKEPGIYAAGRLDRDSEGLLLLTNDGKLQARLTQPGEKTPKTYWVQVEGIPSEEKLAALRAGVELNDGMTLPAGARIMDEPAVWPRNPPIRERKEIPTSWLEIKIIEGRNRQVRRMTAHIGHPTLRLIRYAIGDWTLDGLAPGESRSLPAPELTPLSNSRPRPSSSRSGAHTAKPAKPAGEAPRRASQPRRDERPRSTHPTERAATNPTGGKPRSSGRGTARRPARAGNPDSNDKES
>NZ_CP034967.1|WP_164536357.1|1369181_1369673_-|NUDIX-hydrolase
MSNQAEQSATSHARMEARLTVAALVQWQGRFLVVEEEIKGQRRFNQPAGHVEAGEDLLTAACRELKEETGLTATPTAWLGTYLYKPADSEATYVRTAIIFDLEKAPGQHHPEDPDGDVLACHWLTFEEIAECKPALRSPLVWQCIQDYLAGTRLPLSALKAFI
>NZ_CP034967.1|WP_005353619.1|1367917_1369024_-|tRNA-2-thiouridine(34)-synthase-MnmA
MTDNSQIKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDTDEYCSAAQDLADAKAVCDKLGMKLHTINFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEELGATYIATGHYVRRDDSTGRPRLLRGLDTNKDQSYFLYTLSEKQVGQSLFPVGDLEKPEVRRIAEQLDLITAKKKDSTGICFIGERKFKDFLAKFLPAQPGKIETVDGKVIGEHQGLMYHTLGQRKGLGIGGRKDATEEAWYVVDKEVERNVLVVAQGEHPRLYSDGLIASQLHWVDRTPIREPRRCTVKTRYRQQDIPCLIQPIDDETIRVIFDEKQAAVTPGQSAVFYDGEVCLGGGIIEQRFSHPV
>NZ_CP034967.1|WP_139493458.1|1380712_1382284_+|PTS-maltose-transporter-subunit-IICB
MAKPQAKSTIWEFLQSLGKTFMLPVALLAFSGILLGVGSSLTSDAVKQSMPFLDNTVLQLLFLWMTKVGLVAFIYLPVMFAVAIPLGLAREEKGVAAFAGFVGYAALNLSINFYLTVANVIGDAAAEKAYGVKSILGISSIDTGILGAIIVGVIVAKLHARFYTYKMPDALAFFGGARFVPIITALVLGVVGLVVPFVWPWFAAGINGIGALISHAGPFGPFLFGTGERLLLPLGLHHILVALIRFTEAGGTQLVCGHEVSGALNIFYAELSCADTSGFSVSATSFLSQGKMPAFLGGLPGAALAMYHCARPENRGKIKALLVSGVVACVIGGITEPLEFLFLFVAPVLYVIHAILTGLGFMTMGLLGVTIGNTDGNLIDFLVFGVLQGTATKWYLVPVAAAIWFAIYYSVFRFAIVRFNLKTPGREIETSETAQPAGKKAGNSGYNGEIILNALGGADNILALDNCITRLRMSVQDMSRVDDKVLKANGAIGVIKLDEHNLQVVIGPQVHLVKNQLQSLMEA
>NZ_CP034967.1|WP_164536364.1|1382371_1383562_+|pyridoxal-phosphate-dependent-aminotransferase
MHDIYDFDRVVDRHGTYCTQWDYVADRFGHADLLPFTISDMDFETAPCIRQTLATRLEHGVFGYSRWNHDDFKGAVSDWFAHRYSASLDPETLVYGPSVIYVIAQLVSLWSVPGEGVLVHTPAYDAFGNMLAANDRVLLPCPLKREQGSYQIDWECFEQQAARPDCRILLLCSPHNPTGRVWTRDELGRMAAICQRHGVKVISDDIHMDVSFARYLPWSEVAPDDHWALVSSGSKSFNIPALGGAYAFIANAAARAAYLQRLKAAHGLSSPPILGVLAHISAYRDGAGWLDALKSYLHGNLAHVAARLNAAFPAIDYRVPEGTYLAWIDLRGLGIDSTKRMDALQTLLVEKYRVAIMRGDTYGPEGTGYIRLNVGCPRSKVDQGLDALISALGEVV
>NZ_CP034967.1|WP_164536365.1|1383654_1384077_-|hypothetical-protein
MMFHAMLSTLVRQLSLPQECLHEKGLDLQAGPFSLHIRERDQLVTLFIPLGDIQTPSLAAMADWPVLQLSRDSEQSTLLWCREWLDKLDVDLLTDMVSRMLHQAEALTQGTALAATELSEPAIEPAMSRPNCGIPTTIRA
>NZ_CP034967.1|WP_164536366.1|1384076_1385027_-|hypothetical-protein
MALPAIGGHIHLNRPASPQQTEASPLLAKGNKLFEQSVKRGIGHFQSSDLKQVISALCQLQSAPDSGKAQRVQDAIQHWEQHHPKEVAARGARLTELKQALAEQGAITRAAPRHEPKVMAGGTQALLQKSMAGLEKLGSYACTDAQTFVQPNNPSYQKIIGKLNAFGQDPQRLAANQRANNSANMAAIQITRNKQPLSLRTMENIAKAVDDAKAGCCSTLAYSAAAELLRHNSDQRIEVLAHRGAQGHAQTHCFVVIGRAEGSELTKPESWGPHAKVVDPWAATIGAPLVGTPARPPIANLWPPTESVFDNTHRED
>NZ_CP034967.1|WP_005334588.1|1385164_1386223_-|type-III-secretion-system-export-apparatus-subunit-SctU
MSGEKTEQPTPKKLRDARQKGQVVKSKEVVSTAIILSLVGMLMAMSDYYLEHLGKLMMIPESHINLPFTQALNHVVENLMQEMAYLCIPLLAVAVLVVLASHFAQYGFLLSGESIKPDIKKINPVEGAKKIFSIKSLMEFVKSLLKVSLLSLLVWVTIKGNLQAMLQLPGCGMSCITPVLGGMLGQLMAVCAMGFVVIAIADYAFEHYQHIKQLKMSKDEVKREYKEMEGSPEIKSKRRQFHQELQSSNMRADVKRSSVIVANPTHIAIGIRYERGETPLPVVTLKFTDAQALQVRKIAEEEGIPVLQRIPLARALYRDAQLNNYIPADQIEATAEVLRWLEQWRQSEGPQW
>NZ_CP034967.1|WP_164536367.1|1386219_1387008_-|type-III-secretion-system-export-apparatus-protein-SctT
MTLESLQPQMLAYTLLLPRFISCFVMLPVLSKQMLGGAMIRNGVVCSLALYAYPTVADTLPEQIDGMTLAMLIAKEVLLGLLIGFVAAIPFWAIEASGFLIDNQRGAAMGSLFNPSLGSQTSPTGLLLTQTLITLFFASGAFLALLAALFQSYISWPVAHFFPTIDEQWVNFFYSQFSHMLLLCALLAAPLLIAMFLAEFGLALISRFAPSLNVFVLAMPIKSAVASLLLVIYIKLMMDHAYQQVLVVMDPLQLLIPILEAR
>NZ_CP034967.1|WP_005334586.1|1387004_1387271_-|type-III-secretion-system-export-apparatus-subunit-SctS
MSHADILHFTSQALWLVLILSMPPVLVAALVGTLVSLLQALTQIQEQTLGFVAKLIAVVITLFATTAWLGNELYSFADMVLFKVPQIQ
>NZ_CP034967.1|WP_005334585.1|1387272_1387926_-|type-III-secretion-system-export-apparatus-protein-SctR
MIQLPDELNLIVGLALLALLPFIAVMATSFVKLAVVFSLLRNALGVQQIPPNMAMYGLAIILSIYVMAPVGFATQDYLRQNEVSLAKAESVEKFLDEGIAPYRDFLKKQIKPREHAFFIDSTKQLWPSKYADRLEPDSLLILLPAFTVSELSRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISLPFKLLLFVLLDGWARLTHGLVISYGG
>NZ_CP034967.1|WP_164536368.1|1387922_1388849_-|YscQ/HrcQ-family-type-III-secretion-apparatus-protein
MTPIALTSASLAELTLQQTLSQYRQHFSWSGGELLLAIGLPPATLDTRLQLQWQGLSLPLLCHGAELAHWLAPDLQQAALFSLPEPLQLALIERLGQPLGGLTCSALTRQESNVQTDEPALQLRLQREGASLALWLPQPESLLSKLPPRPRQQRLPLPLTLSLQWGEMGLTMDELATLAIGDVLLPPPHPQLGQQLLICVEGRPFAYCQPHQQHLELTAMHNAASADPFGPTELDQLPIPVSFEVGRQTLDWHTLTSLQPGALIDLGTPLDGEVRIISNGHSLGVGRLVEIQGRLGVRVERLDNESQS
>NZ_CP034967.1|WP_164537913.1|1388845_1389388_-|type-III-secretion-system-needle-length-determinant
MTEKAAKQLNEASLVDARELAEPLAADTDTDINALTLSDEIPEASGQPIPPQVKTPGDLQLARLTPAESNRELGQLLERLAVDIYQELGRPERPPLLRLTLPQLGALSIRIAHHHGELQIEILATSEGQLLLNQGRGDLVDRLQRLYPGERVALDLFGQPDSEQGSRHKRSIYEEWDADA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP034967_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP034967_4

2159352-2159453

Orphan

Consensus_repeat	Method
CAGCAGGGCGACCAGCAGCAGCGAGAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP034967_4

>merge|NZ_CP034967|4|2159352-2159453|CRISPRCasFinder
CAGCAGGGCGACCAGCAGCAGCGAGAGAGTGGCCAGCAGCTTGCCGGTTTTCTGAAAACGGGTGAACCAGAGCAGCAGCAGGGCGACCAGCAGCAGGGAGAG

>NZ_CP034967|4|4|2159352-2159453|CRISPRCasFinder
CAGCAGGGCGACCAGCAGCAGCGAGAG	AGTGGCCAGCAGCTTGCCGGTTTTCTGAAAACGGGTGAACCAGAGCAG
CAGCAGGGCGACCAGCAGCAGGGAGAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP034967.1\|WP_164536734.1\|2159608_2160385_+\|tRNA-uridine-5-oxyacetic-acid(34)-methyltransferase-CmoM	unknown	unknown	gnl\|CDD\|182918
NZ_CP034967.1\|WP_164536732.1\|2157845_2158601_-\|triose-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234589
NZ_CP034967.1\|WP_164536738.1\|2176491_2177379_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP034967.1\|WP_005345759.1\|2161800_2162520_+\|chromosome-partition-protein-MukE	unknown	unknown	gnl\|CDD\|235378
NZ_CP034967.1\|WP_139474292.1\|2151783_2153169_-\|L-serine-ammonia-lyase	unknown	unknown	gnl\|CDD\|273233
NZ_CP034967.1\|WP_164536736.1\|2170420_2171698_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|225116
NZ_CP034967.1\|WP_005336848.1\|2147120_2147387_-\|cell-division-topological-specificity-factor-MinE	unknown	unknown	gnl\|CDD\|234718
NZ_CP034967.1\|WP_164536731.1\|2153877_2155119_+\|dicarboxylate/amino-acid:cation-symporter	unknown	unknown	gnl\|CDD\|366058
NZ_CP034967.1\|WP_005360946.1\|2149047_2149326_+\|YcgL-domain-containing-protein	unknown	unknown	gnl\|CDD\|377477
NZ_CP034967.1\|WP_164536737.1\|2172481_2176396_+\|ATP-dependent-RNA-helicase-HrpA	unknown	unknown	gnl\|CDD\|182986
NZ_CP034967.1\|WP_164536735.1\|2162523_2166951_+\|chromosome-partition-protein-MukB	unknown	unknown	gnl\|CDD\|235316
NZ_CP034967.1\|WP_121463494.1\|2168621_2169584_+\|IS1595-family-transposase	unknown	unknown	gnl\|CDD\|372298
NZ_CP034967.1\|WP_042055930.1\|2153322_2153607_-\|pyrimidine/purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|377724
NZ_CP034967.1\|WP_013723728.1\|2148220_2148940_-\|septum-site-determining-protein-MinC	unknown	unknown	gnl\|CDD\|179880
NZ_CP034967.1\|WP_005336844.1\|2150137_2151508_-\|L-serine-ammonia-lyase	unknown	unknown	gnl\|CDD\|273233
NZ_CP034967.1\|WP_005345760.1\|2160485_2161820_+\|chromosome-partition-protein-MukF	unknown	unknown	gnl\|CDD\|179980
NZ_CP034967.1\|WP_005333252.1\|2177495_2177783_+\|50S-ribosomal-protein-L25	unknown	unknown	gnl\|CDD\|180318
NZ_CP034967.1\|WP_005336847.1\|2147389_2148202_-\|septum-site-determining-protein-MinD	unknown	unknown	gnl\|CDD\|225447
NZ_CP034967.1\|WP_021230185.1\|2171818_2172241_+\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341392
NZ_CP034967.1\|WP_005336840.1\|2156724_2157696_-\|6-phosphofructokinase	unknown	unknown	gnl\|CDD\|235111

Protein	Function_ID	Function_description	E-value
NZ_CP034967.1\|WP_164536734.1\|2159608_2160385_+\|tRNA-uridine-5-oxyacetic-acid(34)-methyltransferase-CmoM	gnl\|CDD\|182918	PRK11036, PRK11036, tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM.	3.61933e-136
NZ_CP034967.1\|WP_164536732.1\|2157845_2158601_-\|triose-phosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	1.26091e-130
NZ_CP034967.1\|WP_005345759.1\|2161800_2162520_+\|chromosome-partition-protein-MukE	gnl\|CDD\|235378	PRK05256, PRK05256, chromosome partition protein MukE.	3.58609e-133
NZ_CP034967.1\|WP_139474292.1\|2151783_2153169_-\|L-serine-ammonia-lyase	gnl\|CDD\|273233	TIGR00720, hypothetical_protein_NEICINOT_00681, L-serine dehydratase, iron-sulfur-dependent, single chain form. This enzyme is also called serine deaminase and L-serine dehydratase 1. L-serine ammonia-lyase converts serine into pyruvate in the gluconeogenesis pathway from serine. This enzyme is comprised of a single chain in Escherichia coli, Mycobacterium tuberculosis, and several other species, but has separate alpha and beta chains in Bacillus subtilis and related species. The beta and alpha chains are homologous to the N-terminal and C-terminal regions, respectively, but are rather deeply branched in a UPGMA tree. This enzyme requires iron and dithiothreitol for activation in vitro, and is a predicted 4Fe-4S protein. Escherichia coli Pseudomonas aeruginosa have two copies of this protein. [Energy metabolism, Amino acids and amines, Energy metabolism, Glycolysis/gluconeogenesis].	0
NZ_CP034967.1\|WP_164536736.1\|2170420_2171698_+\|HD-domain-containing-protein	gnl\|CDD\|225116	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms].	3.18923e-50
NZ_CP034967.1\|WP_005336848.1\|2147120_2147387_-\|cell-division-topological-specificity-factor-MinE	gnl\|CDD\|234718	PRK00296, minE, cell division topological specificity factor MinE; Reviewed.	1.6648e-43
NZ_CP034967.1\|WP_164536731.1\|2153877_2155119_+\|dicarboxylate/amino-acid:cation-symporter	gnl\|CDD\|366058	pfam00375, SDF, Sodium:dicarboxylate symporter family.	5.05437e-113
NZ_CP034967.1\|WP_005360946.1\|2149047_2149326_+\|YcgL-domain-containing-protein	gnl\|CDD\|377477	pfam05166, YcgL, YcgL domain. This family of proteins formerly called DUF709 includes the E. coli gene ycgL. homologs of YcgL are found in gammaproteobacteria. The structure of this protein shows a novel alpha/beta/alpha sandwich structure.	7.74829e-38
NZ_CP034967.1\|WP_164536737.1\|2172481_2176396_+\|ATP-dependent-RNA-helicase-HrpA	gnl\|CDD\|182986	PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional.	0
NZ_CP034967.1\|WP_164536735.1\|2162523_2166951_+\|chromosome-partition-protein-MukB	gnl\|CDD\|235316	PRK04863, mukB, chromosome partition protein MukB.	0
NZ_CP034967.1\|WP_121463494.1\|2168621_2169584_+\|IS1595-family-transposase	gnl\|CDD\|372298	pfam12762, DDE_Tnp_IS1595, ISXO2-like transposase domain. This domain probably functions as an integrase that is found in a wide variety of transposases, including ISXO2.	1.52601e-12
NZ_CP034967.1\|WP_042055930.1\|2153322_2153607_-\|pyrimidine/purine-nucleoside-phosphorylase	gnl\|CDD\|377724	pfam06865, DUF1255, Protein of unknown function (DUF1255). This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown.	1.9093e-46
NZ_CP034967.1\|WP_013723728.1\|2148220_2148940_-\|septum-site-determining-protein-MinC	gnl\|CDD\|179880	PRK04804, minC, septum site-determining protein MinC.	8.78617e-86
NZ_CP034967.1\|WP_005336844.1\|2150137_2151508_-\|L-serine-ammonia-lyase	gnl\|CDD\|273233	TIGR00720, hypothetical_protein_NEICINOT_00681, L-serine dehydratase, iron-sulfur-dependent, single chain form. This enzyme is also called serine deaminase and L-serine dehydratase 1. L-serine ammonia-lyase converts serine into pyruvate in the gluconeogenesis pathway from serine. This enzyme is comprised of a single chain in Escherichia coli, Mycobacterium tuberculosis, and several other species, but has separate alpha and beta chains in Bacillus subtilis and related species. The beta and alpha chains are homologous to the N-terminal and C-terminal regions, respectively, but are rather deeply branched in a UPGMA tree. This enzyme requires iron and dithiothreitol for activation in vitro, and is a predicted 4Fe-4S protein. Escherichia coli Pseudomonas aeruginosa have two copies of this protein. [Energy metabolism, Amino acids and amines, Energy metabolism, Glycolysis/gluconeogenesis].	0
NZ_CP034967.1\|WP_005345760.1\|2160485_2161820_+\|chromosome-partition-protein-MukF	gnl\|CDD\|179980	PRK05260, PRK05260, chromosome partition protein MukF.	0
NZ_CP034967.1\|WP_005333252.1\|2177495_2177783_+\|50S-ribosomal-protein-L25	gnl\|CDD\|180318	PRK05943, PRK05943, 50S ribosomal protein L25; Reviewed.	1.76563e-46
NZ_CP034967.1\|WP_005336847.1\|2147389_2148202_-\|septum-site-determining-protein-MinD	gnl\|CDD\|225447	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning].	1.14362e-175
NZ_CP034967.1\|WP_021230185.1\|2171818_2172241_+\|CBS-domain-containing-protein	gnl\|CDD\|341392	cd04629, CBS_pair_bac, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in bacteria. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	1.8473e-61
NZ_CP034967.1\|WP_005336840.1\|2156724_2157696_-\|6-phosphofructokinase	gnl\|CDD\|235111	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase.	0

>NZ_CP034967.1|WP_164536732.1|2157845_2158601_-|triose-phosphate-isomerase
MRQHLVMGNWKLNGTKASVEALIKGLTPAAAAHPSVQVAVCPPVIFLGLVEQLTAGSKIAYGAQNADVHESGAFTGENAPSMLKAFGCTYSLVGHSERRTLHAETDDVVAAKYEAIQKGGLVPVLCIGETLEQFEAGVTKNVVETQLKAVIDRCGIASFNNAVIAYEPVWAIGTGKTATPEIAQSVHAHIRQYLAGFDATVAAKVQILYGGSVTGATAADLFGQPDIDGGLVGGASLKVDDFSQIIAGAAK
>NZ_CP034967.1|WP_005336840.1|2156724_2157696_-|6-phosphofructokinase
MTKQIKRIGVLTSGGDAPGMNAAIRAVVRAGLHHGLEVYGIYDGYLGLHQDRIVKLERHSVSDVVNRGGTFLGSARFPAFKDPAVRAEAIENLKKHGIDALVVIGGDGSYMGAKKLTEEGFPCIGLPGTIDNDIAGTDFTIGFDTALNVVVDAIDRLRDTCSSHHRISVVEIMGRHCGDLAMSAAVAGGAEYVIVPEVAFDKEKLLKQIKEGEAKGKKHAIITICEHVTDVNALAKDIEALTGRETRATILGHIQRGGAPTARDRIMSSRMGAYAVEQLLAGHGGRCVGIQRNELVHHDIIDCIENMKRPFDQELYNLSTTLF
>NZ_CP034967.1|WP_164536731.1|2153877_2155119_+|dicarboxylate/amino-acid:cation-symporter
MLTNGLIKNIGFQVVVAMVLGAVVGAFMGEQATVFAPLGTLFIQLIKMLVIPLVAVAILSGAANLGASPAAGKIGAATLAFFLVTSALAVLLALVMGQIFKPGVGVDFASVASMFGGDYADKGALPDAVATLLGMIPTNVFNSLNEANILQILVFCMFLGIALAKQPRERAKPLVDGLNTLVDAFVWMINKVMIIAPLGVFGLMAEAIGTYGFDVLTLVLKLFVVYVAAILIFGFVVYPLLVMMFSNTPVMKYLSAMKKPQIVAFSTASSMATLPVNMETCEHDLKVTNATASFVLPLGATINMSGNAIYYGLVAIFFAQVYNIELSVGAWAAIIVTSTLGAIGQAGVPGPSFLVVAVLLAAGIPIEGLPLLFALDRLFDMIRTSLNITGDAACAVIVDRFSPEYDPERWNKA
>NZ_CP034967.1|WP_042055930.1|2153322_2153607_-|pyrimidine/purine-nucleoside-phosphorylase
MLKVNEYFDGNVKSIGFEQKGEKSTVGVMNAGDYLFNTAAPERMTVIKGALTIQLADEDEWHTYNQGESFLVAGHSSFKLEVKTPTAYLCEFLD
>NZ_CP034967.1|WP_139474292.1|2151783_2153169_-|L-serine-ammonia-lyase
MISVFDLFSIGIGPSSSHTVGPMRASYAFVQQLKLQGHLQQVTRVEVECYGSLGQTGKGHGTGKAIILGLSGFEPESVDIDAIPAILARVEKEQNLQLAGEQPSHFPRTGAIIFNRRKTLPAHTNGMTLRAFDKEENLRFSQTYYSIGGGFIIEESHFATAKEEAAKSDAEHPVPYPFDSGAQLLAHCQESGLSISGLILANERVFRSDEQIKAGLRKIWQAMQGCVERGCKSEGVLPGGLKVRRRAPGLFRQLSCETNFNKDPLMVMEWVDLFALAVNEENAAGGRVVTAPTNGAAGIIPAVLHYYDRFVHKVDDETLIRYFLTAAAIGILYKKNASLSGAEVGCQGEVGVACSMAAGALTELLGGSPAMVENAAEIGMEHNLGLTCDPIGGLVQVPCIERNAMGAVKAINAARLALRGTGEHKVSLDKVIKTMWETGNDMKTKYKETARGGLAVNITEC
>NZ_CP034967.1|WP_005336844.1|2150137_2151508_-|L-serine-ammonia-lyase
MISVFDIFKIGVGPSSSHTVGPMKAAKQFVDELRAGGKIRDVTRINVDVYGSLSWTGKGHHTDTAIIMGLAGNLPENVDIDAIPEFISRVEQTERLPIGLHCHTVSFPRDAMVFHDEALPLHENGMKLTALIEDEVVYSKTYYSIGGGFIVDEENFGKADSGDMSVRYPFKSAAELVAHCSQTGLSISALMMENEKCFNTPEEIYKKFGKIWNTMREGIERGCRTEGVLSGPLRVPRRAAPLYRQLNTNENLSSDPMNIVDWVNMFALAVSEENAAGGRVVTAPTNGAAGIIPAVLAYYDKFIQPVGRDEYTRFYLAAGAVGILYKMNASISGAEVGCQGEVGVSCSMAAAGLTELMGGSPEHVCEAAEIGMEHNLGLTCDPVAGQVQVPCIERNAIAAMKAVNASRMALRRTSKPRVSLDKVIETMYITGKDMDSKYRETSRGGLAIKVMQVACE
>NZ_CP034967.1|WP_005360946.1|2149047_2149326_+|YcgL-domain-containing-protein
MLCAVYKSRKKAETYLFVEKREDFSRVPEPLLSAFGRPELVLMTKLDPAKPLGLADVGKVMAALTNQGFYLQVPPPPENLLEQHKASLKKPS
>NZ_CP034967.1|WP_013723728.1|2148220_2148940_-|septum-site-determining-protein-MinC
MVERDNELKGTTFTISVLHISDGEPERIRQLLAEKVAQAPYFFNCAPLVINVSRLEHIPDFEQLKELVESEEFVLVGITGARSEEMKTAAKAVGLAVMASGKSRKSEPEPEPAPAPAAPEVVPEPEPAPLIPSKVHVGPVRSGQQIYAAGTSLVVLGSVSPGAEVLADDSIHIYGTLRGRAIAGARGNTQARIYCQQLQAELLSIAGTFQLSDALPAGLIQQPVHVRLDNEQLRIDRIK
>NZ_CP034967.1|WP_005336847.1|2147389_2148202_-|septum-site-determining-protein-MinD
MARIIVVTSGKGGVGKTTTSAALSTGLAQRGHKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVINGEANLNQALIKDKRSENLFILPASQTRDKDALTREGVEKILDQLAEMKFDYIVCDSPAGIEAGALMALYFADEAIVTTNPEVSSVRDSDRILGILASKSRRAERGEDPIKEHLLLTRYCPTRVNRGDMLSVQDVQEILAIPLLGVIPESQAVLRASNSGEPVILDKESDAGQAYEDAVSRLLGDAKEFRFLEEEKKGFFSRLFGS
>NZ_CP034967.1|WP_005336848.1|2147120_2147387_-|cell-division-topological-specificity-factor-MinE
MSLLDYFRSNKKQNTAQLAKERLQIIVAHERSSRGGPDYLPQLKQDILDVIRKYVNIDPEKITVQLDQKSDELSVLELNITFADDKKG
>NZ_CP034967.1|WP_164536734.1|2159608_2160385_+|tRNA-uridine-5-oxyacetic-acid(34)-methyltransferase-CmoM
MKQDQSFDGRADKFARNIYDSTKGRIRTTIVWSDIEACLARLGNRPLRILDAGGGFGYFAQKLAAMGHQVELCDLSAEMLELARSQIAEKGLEDKIRLIHCPIQDLKQHVTGTFDLVLCHAVLEWLAEPRQTLLGLFPFVNAGGILSLLFYNRHGLLFQSLVVGNFDYVRLGLRKKRQTALTPTNPQLPEQVYDWIGRGGLRIIGKTGVRVIHDYMRHKQDQVEKFDDLLAMEQQYCRQEPFVALGRYIHVMAQKPAS
>NZ_CP034967.1|WP_005345760.1|2160485_2161820_+|chromosome-partition-protein-MukF
MMSTSRTLPERSLPELVGWVRQEGLALSLPTDRLAFLIAIKTLSEDESDLSEAALHDAFGYVSSAFGQMDETLTGRANNAINDLIRQQLLSRFNTDMVAGESLYRLSRLGVSIVDFFMDQRQVDSIKLSILLEHLAAELDTARKAALETNTREQWDAEVLPRLTFSLEETLGRIDLTQRAMDEQQNQVKSEIAALLTQNWVDAIHSCEKLLHETGQTLRELQDTLDAAGHRLQAGLLNIQEAAQGRDDLFHVEELTHALQGRLDVITSWGQQCIELWSRYDRHVHKFIRNAIDMDKNRAFSQRLRESIRNFEQHNWQLRVAEEPRLLELRDETIAIHDEEVTGEVPLEMEYVEMVDINQELAERIERYLARYPEQGQQLDLADVLREYLLDYPAHAHFDVARLLIDQAVRLGHASGERELHRQPAWKPINQAGSKVQAYVIDQY
>NZ_CP034967.1|WP_005345759.1|2161800_2162520_+|chromosome-partition-protein-MukE
MSLINTEFPLPLRLAEAIANPLFPRIDTALRSGRHISADEFEQHSALVEYHSELEIFYGRYQVELIKAPEGFFYLRPRPSSDIGTTVLSELDMLVGKVLCYLYLSPDRLASEGVFAMAELQEEVLSLADEKQLLRMVNSRSGGTDLDKKKLLEKIRTSMRRLRRLGMITALGNGDKFRVNESVFRFAADVRSDEDPRAVQLRMIQEGEAIFHDDEMPSSDSLFDDIEADLDEEQLDLEV
>NZ_CP034967.1|WP_164536735.1|2162523_2166951_+|chromosome-partition-protein-MukB
MRGKFKSLTMVNWNGFFARTFDLDQLVTTLSGGNGAGKSTTMAAFIAALIPDQSLLHFRNTTEAGSSSASRDKGLYGKLQRGHCYSLLEVMNSREQRIWVGVHLEQVANRDNKVNITPFALVDVPENLAPTDLLLEKLDGGKGRVRAFTDLKGAAAELGALKVAKFNTVTDYHNFMFEFGITPKKLRDQKDRGKFYRLIEASLYGGISSSISRSLREYLLPENSGVRKAFADMEAAIYENRRTLEAIKETQGQRDLFKNLITETTHYVAADYVRNAAEKSRLSELALKARQELADKRRILAEEKQRAIYLADEVEQLTNREKLLTDELESASEHLAKVMAAVSLQKKIEMYRADLADLSDKLEQQQAVVEEIHSQLLEVEERKELAQAEVDSLKTQLADYQQALDIQQTRAIQYRQAVQALDAAREQCELPGLTAEQASDTLHQFRAAEQSLTSRVLGTEQQLALAKAAVAEHEAALALLLSIAPETVREAAWPTAQALLKRHIEDKARIAQGQGLRAALARLEKESESQKSLFKLRDELQQASGQLIASSDELEIFLEAQRTRQEELAEQQAEVNQRRASLEHQGTQLGRDISDLTKLAPRWLKSFEKLEQLREQSGLPLTTAEELSAGMQTVLDKEREFEQESNRIAAQKQALELQIRNLQLGAGEADPRLARIAEQVGGVLLSDVYDDISIDDASYYSALYGPARSALVVLDLEGAIERLKKLEDCPEDIYLIQGNPDSFDEDLVEADELGDAVLVRTSKRQVRFSRYPELPLFGRAAREKRIEQLDLEREGLIEGYAKAAFEQQKYHRLYGHFRDFIGQHLDIAFRPDPEAEVQAKQAELRALQAAIGECDKQLAEAKAAAAQLTRHIQLVQGMLPFAHLFAETDLAARLEAAHADVEALKQAEAFIAKHGKSLEKLETMVQVLRQDPQDLAALQAAYDEVSDLLAEQKRRCYALDQLVARLPHFAYQDAQDLLGKASEMSERLKEKLKAAELAARTAGEQHKQIAQRHTEALQLRTALSSSVEAKRQTLTEFEQELAAMGLTLSDDMEEKARAHKKEIEELLIRTRSRRTSAEAQLQVTKREIESLGGRLKLEGKDYYSARKSLVGHKASWSRVVRLARETDVEKRLNKRELAYLDSDELRSMSDKALGALRVAVAHDEALRDALRLSEGNRSTEQKVAFYVQVYRYLKDRIRNDIIRSDDPVEAIEEMEIELARLADELKQRETHLSLSSHEVAAKITNIIRREQNRIRVLNQGLQNIAFGLVRGVRLNVNIREAHTRLLTALADQTAMHNDLFADKELSFSEAMAKLFQRLNPQIEQGDRSYQVMGDVLLDYRNYLELEIEVQRGADGWLRAESGALSTGEAIGTGQAILLMVLISWEEESRRLRGKDIAPCRLLFLDEAARLDGKSIATLFELCERQDMQLLIAAPENISPEKGTTYKLIRKVQGKHEHVHVVGLRGFGFADDKLIA
>NZ_CP034967.1|WP_121463494.1|2168621_2169584_+|IS1595-family-transposase
MDTPAFQHLLSLFPQLTLRQRRVAQQELTAPHTITSLNTQLPACSGCPHCQADVTQLAPWGWSRGLRRYRCKLCLRTSTVLTKTPLARLRKAQCWEDYAQALIEGLTVRQAARRCGVSKNTAFLWRHRFLRAMATHQATREEGIVEVDETFFLESFKGQRGLPRPPRHRGGKGRTRGAGPDYIPVMVVQDRAGHHADFQLEKIDAETVIAVLKPLVSPDAVLCSDGAGVYACFSKEQGVTHQVVRNRQGERVVGAYHIQHVNGYHHRLKEWMERFHGVATHYLKNYLGWRRMLERYGKGVNIKACLHEALGRPMQHVIGT
>NZ_CP034967.1|WP_164536736.1|2170420_2171698_+|HD-domain-containing-protein
MDRAQGAAPFSLQVDLRQVVYALSASLDLVGIGDVAHGKRVGIMAAECSRELGMSEAERCLLFELGVLHDIGVSSTITHHHLVSEFDWESSQRHCEVGYQLLKDFRLLAPLALPIRYHHTHWHLLREMADVDPNVARQANLIFLVDRCDALAAPYYGDGSLLMHTNEIRARLQDFRDEFFAPELVDAFLKASRSEAFWLQLEARSINDYMLEMLQVREPCLTFNGELKALAQIFSGIVDAKSPFTMTHSLGVSRLSRALAELMGVSAIHCDMLEIAGLLHDLGKLRVPDEILDKPACLTKEERAIINTHSFETYQILRHIEGFEEIACWAAYHHEEPDGEGYPFHLPASAMALEARILRVADIFQAMVQDRPYRRGLPARDALTFMQQLADQGRVDPAVVAVLADHLPQMMMAAIPDREPDHAIN
>NZ_CP034967.1|WP_021230185.1|2171818_2172241_+|CBS-domain-containing-protein
MESLKAKDYMQSRPITFTADMMVQAAVEKFLNSHQLGGPVVDGQGHLIGWISEQDCIAVLLKEAYHCEQVAQVKDVMRKEVLSVGPDTSILSLAEMMMGQKPKIYPVVEEGRLLGVINRHNVMQAIHAQLTTCFVHHSHG
>NZ_CP034967.1|WP_164536737.1|2172481_2176396_+|ATP-dependent-RNA-helicase-HrpA
MSLSIEALRRRLSACMNLDARRLSSRLHGVKKLPEGKQAAVLETIAADLAAAEVRYQTRLAGVPKVTYPDNLPVSQKQAEIAKAIQEHQVVIIAGETGSGKTTQIPKICLALGRGVKGFIGHTQPRRLAARTVAARIAEEMESELGHYVGYKVRFTDQVSEQTHIKLMTDGILLAEIQNDRMLTQYDTIIIDEAHERSLNIDFILGYLKQLLPKRPDLKVIITSATIDPQRFSRHFNKAPVIEVSGRTYPVEVRYRPLFVDKKSSDKSEGLEERDELQGIFDAVEELAREGLGDILIFMNGEREIRDTADALRKLNLRDTEVLPLYARLSNAEQNKVFQPHAGRRIVLATNVAETSLTVPGIRYVIDPGTARISRYSWRTKVQRLPIEPVSQASANQRKGRCGRVADGICIRLYSEEDFNCRPAFTDPEILRTNLASVILQMLALGLGNMEAFPFVEPPESRHIKDGLTLLKELEAVRELPATGEREAKLQLTETGRQLSRIPLDPRLAKMVISAAQTGCLSEVMVITAALSIQDPRERPMEKKQAADEKHRRFEDKDSDFLAFVNLWNYLKEQQDALGSNPFRRMCQKEFLSYLRVREWQDIHFQLRQTVKELGFKANHEPADFKTVHCALLTGLLSHIGNKDLEKPEFLGARNGRFHLFPASGLFKKPPKWVMAAELVETSRLYARINAKIEPEWVEPLAGHLIKLHHSDPHWSKKNGAVMAKEKVTLYGLTLVNERTINFSRIDPALCRELFIRRALVEGDFETRHRFFSDNRKLLAEVEALEHKSRRRDILVDDEDLFRFYDARLPEEVISSRHFDKWWKEAQKQDAELLNFEKEMLMKGDAAHISDLDYPNFWQQGRLKLKLTYQFEPGEAADGVTLHIPLPLLNQVEVKGFEWLIPGLRHELLVALIKSMPKPMRKNFVPAPNYADALLASINPEQGPLLDEMERQLRRMTGVTVPRESWDWAAVPDHLKLTFRVVDDKHKKVAEGKDLEALKESLRGKVQETLSQVADDDIEQSGLTLWSFGELPQEYSQKRGGFEVKAYPALVDQKDSVAIQLVESPVVQQQLMWAGQRRLVLLNVPSPIKYLQEKLPNKAKLGLYFNPFGKVAELIDDCIACGCDKLIEQHGGLAWDEAGFEALKEFVRAELNDAVVEVAKQVEAVLTLSHEIKKRLKGKMQLDTAFAMSDIQQQLGNLIHKGFVTETGWQRLPDLLRYLRAIERRLEKLAIDPNRDRVYMLKVHSVESEYKALLAKIPKSQLVPTEVANIRWMIEELRVSFFAQNLGTPYPVSDKRVLNAIAQC
>NZ_CP034967.1|WP_164536738.1|2176491_2177379_+|hypothetical-protein
MLGIWLSVAQVVISGYQPIAEQTWVQLNPEYYPLARTPPAMFVAWRGNQFPPLAQKQKHGRWQILFPARLVPPFDLFEGEAQLSKTYLARLRRIDEMAYGVVPGQAVAAGAIVQQGSGSPAYHAQPVAPFIAEFRTPQEAFGGVDMPIDPDESEPLLAQLGVTFRTAGMSGAKGEEGVASTDMALASHTASLSAGSDAMLTLSAPAVGGPQTVCHQVAAGETLWRIANQLSSAQGADTYSYLLALVAENQQRLGKSIRVRTGEGLYCPRAETLARFDALSPAQRQQQFARLEQGR
>NZ_CP034967.1|WP_005333252.1|2177495_2177783_+|50S-ribosomal-protein-L25
MSFVFQAEVRSDLGKGASRRLRQADQVPAIVYGAGKEALSITVDHKKMILAQEKPEFYESVLTLVINGEEVNVKVKAIQRHPVRYKLIHLDFVRV

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP034967_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP034967_5

2730165-2730268

Orphan

Consensus_repeat	Method
TAGTTCAGTCGGTAGAACGGCGAAC	CRISPRCasFinder

1 spacers

WYL

The CRISPR arrays of NZ_CP034967_5

>merge|NZ_CP034967|5|2730165-2730268|CRISPRCasFinder
TAGTTCAGTCGGTAGAACGGCGAACATCCAATCCGTAGATAACGGGTTAAAGTCCTTAGGAGGAGCCACTTTTCCCTCGTAGTTCAGTCGGTAGAACGGCGGAC

>NZ_CP034967|5|5|2730165-2730268|CRISPRCasFinder
TAGTTCAGTCGGTAGAACGGCGAAC	ATCCAATCCGTAGATAACGGGTTAAAGTCCTTAGGAGGAGCCACTTTTCCCTCG
TAGTTCAGTCGGTAGAACGGCGGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP034967.1\|WP_124242729.1\|2729353_2729764_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP034967.1\|WP_164536997.1\|2726679_2729361_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367375
NZ_CP034967.1\|WP_164536995.1\|2723500_2724145_+\|TM2-domain-containing-protein	unknown	unknown	gnl\|CDD\|377473
NZ_CP034967.1\|WP_164536998.1\|2730593_2731844_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|170049
NZ_CP034967.1\|WP_041209432.1\|2740787_2741873_+\|DNA-sulfur-modification-protein-DndB	unknown	unknown	gnl\|CDD\|379453
NZ_CP034967.1\|WP_136501387.1\|2736135_2737395_-\|translesion-error-prone-DNA-polymerase-V-subunit-UmuC	unknown	unknown	gnl\|CDD\|179607
NZ_CP034967.1\|WP_164536992.1\|2719764_2720262_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227111
NZ_CP034967.1\|WP_164536993.1\|2721073_2722306_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271177
NZ_CP034967.1\|WP_164536994.1\|2722526_2723408_+\|WYL-domain-containing-protein	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
NZ_CP034967.1\|WP_164537000.1\|2735109_2735616_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP034967.1\|WP_164536991.1\|2719218_2719743_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP034967.1\|WP_164537951.1\|2732422_2733283_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226990
NZ_CP034967.1\|WP_139460606.1\|2732117_2732390_+\|AlpA-family-phage-regulatory-protein	unknown	unknown	gnl\|CDD\|283558
NZ_CP034967.1\|WP_164536996.1\|2724132_2724858_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP034967.1\|WP_164536990.1\|2718987_2719206_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP034967.1\|WP_164537003.1\|2738628_2740653_+\|DNA-phosphorothioation-associated-putative-methyltransferase	unknown	unknown	gnl\|CDD\|274979
NZ_CP034967.1\|WP_164537002.1\|2738179_2738629_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP034967.1\|WP_164537001.1\|2737375_2737819_-\|translesion-error-prone-DNA-polymerase-V-autoproteolytic-subunit	unknown	unknown	gnl\|CDD\|182350
NZ_CP034967.1\|WP_103252512.1\|2720320_2720767_+\|DUF2787-domain-containing-protein	unknown	unknown	gnl\|CDD\|371323
NZ_CP034967.1\|WP_164536999.1\|2733363_2735067_+\|DUF927-domain-containing-protein	unknown	unknown	gnl\|CDD\|336282

Protein	Function_ID	Function_description	E-value
NZ_CP034967.1\|WP_164536997.1\|2726679_2729361_+\|hypothetical-protein	gnl\|CDD\|367375	pfam03175, DNA_pol_B_2, DNA polymerase type B, organellar and viral. Like pfam00136, members of this family are also DNA polymerase type B proteins. Those included here are found in plant and fungal mitochondria, and in viruses.	0.00477851
NZ_CP034967.1\|WP_164536995.1\|2723500_2724145_+\|TM2-domain-containing-protein	gnl\|CDD\|377473	pfam05154, TM2, TM2 domain. This family is composed of a pair of transmembrane alpha helices connected by a short linker. The function of this domain is unknown, however it occurs in a wide range or protein contexts.	5.0343e-11
NZ_CP034967.1\|WP_136501387.1\|2736135_2737395_-\|translesion-error-prone-DNA-polymerase-V-subunit-UmuC	gnl\|CDD\|179607	PRK03609, umuC, translesion error-prone DNA polymerase V subunit UmuC.	0
NZ_CP034967.1\|WP_164536992.1\|2719764_2720262_+\|hypothetical-protein	gnl\|CDD\|227111	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism].	0.00339785
NZ_CP034967.1\|WP_164536993.1\|2721073_2722306_+\|site-specific-integrase	gnl\|CDD\|271177	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain. Rci protein is a tyrosine recombinase specifically involved in Shufflon type of DNA rearrangement in bacteria. The shufflon of plasmid R64 consists of four invertible DNA segments which are separated and flanked by seven 19-bp repeat sequences. RCI recombinase facilitates the site-specific recombination between any inverted repeats results in an inversion of the DNA segment(s) either independently or in groups. HP1 integrase promotes site-specific recombination of the HP1 genome into that of Haemophilus influenza. Bacteriophage Hp1_like integrases are tyrosine based site specific recombinases. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	4.1017e-34
NZ_CP034967.1\|WP_164536994.1\|2722526_2723408_+\|WYL-domain-containing-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	3.00086e-20
NZ_CP034967.1\|WP_041209432.1\|2740787_2741873_+\|DNA-sulfur-modification-protein-DndB	gnl\|CDD\|379453	pfam14072, DndB, DNA-sulfur modification-associated. This is family of bacterial proteins likely to be necessary for binding to DNA and recognising the modification sites. Members are found in bacteria, archaea and on viral plasmids, and are typically between 354 and 474 amino acids in length. There is a conserved DGQHR sequence motif.	5.35924e-177
NZ_CP034967.1\|WP_164537951.1\|2732422_2733283_+\|hypothetical-protein	gnl\|CDD\|226990	COG4643, COG4643, Uncharacterized protein conserved in bacteria [Function unknown].	1.97238e-37
NZ_CP034967.1\|WP_139460606.1\|2732117_2732390_+\|AlpA-family-phage-regulatory-protein	gnl\|CDD\|283558	pfam05930, Phage_AlpA, Prophage CP4-57 regulatory protein (AlpA). This family consists of several short bacterial and phage proteins which are related to the E. coli protein AlpA. AlpA suppress two phenotypes of a delta lon protease mutant, overproduction of capsular polysaccharide and sensitivity to UV light. Several of the sequences in this family are thought to be DNA-binding proteins.	1.49037e-09
NZ_CP034967.1\|WP_164536998.1\|2730593_2731844_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|170049	PRK09692, PRK09692, integrase; Provisional.	2.69493e-161
NZ_CP034967.1\|WP_164537003.1\|2738628_2740653_+\|DNA-phosphorothioation-associated-putative-methyltransferase	gnl\|CDD\|274979	TIGR04096, conserved_hypothetical_protein, DNA phosphorothioation-associated putative methyltransferase. Members of this protein family show distant local sequence similarity to a number of S-adenosyl-methionine-dependent methyltransferases. The family is identified by Partial Phylogenetic Profiling as closely tied to the DNA phosphorothioation system (dnd), and members are found adjacent to dnd genes in at least 13 species (Streptomyces lividans TK24, Shewanella frigidimarina NCIMB 400, Mycobacterium abscessus ATCC 19977, Nostoc punctiforme PCC 73102, Vibrio fischeri MJ11, etc.). The DNA phosphorothioation enables a novel form of restriction enzyme activity. Most members of this family appear in species with the DNA phosphorothioation system. [DNA metabolism, Restriction/modification].	0
NZ_CP034967.1\|WP_164537001.1\|2737375_2737819_-\|translesion-error-prone-DNA-polymerase-V-autoproteolytic-subunit	gnl\|CDD\|182350	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit.	1.0714e-49
NZ_CP034967.1\|WP_103252512.1\|2720320_2720767_+\|DUF2787-domain-containing-protein	gnl\|CDD\|371323	pfam10980, DUF2787, Protein of unknown function (DUF2787). This bacterial family of proteins has no known function.	5.7397e-41
NZ_CP034967.1\|WP_164536999.1\|2733363_2735067_+\|DUF927-domain-containing-protein	gnl\|CDD\|336282	pfam06048, DUF927, Domain of unknown function (DUF927). Family of bacterial proteins of unknown function. The C-terminal half of this family contains a P-loop motif. The N-terminal domain appears to have a unique fold, which contains three Helices and two strands. Structural analyses show that helicases containing this domain form a hexameric ring with a positively charged central pore threading a single DNA strand through suggestive of a replicative function for this helicase.	4.21184e-67

>NZ_CP034967.1|WP_124242729.1|2729353_2729764_+|hypothetical-protein
MNEHQYGRQILAEMQCLYLHMKAGKPKYGRDGLSSLISEHVPTVARTCRFRAELSSLILQDTSWGRRVFIHRVFELIRREFGIEVPNDPDYVPKAAKADAMAEAVEAQIALVEMYEDDLRLERARMEAEHRPWDDD
>NZ_CP034967.1|WP_164536997.1|2726679_2729361_+|hypothetical-protein
MELEPDLSFLTGPSFDYPSERGEPFPMLSELDISELIAPPALDDFFNKTPRRHLDIPLEPLGFADGEDLWIGIDAEWVLENGRNVLLSYQAFVITHLGETFGRVYYPDRGKRLSFEKFIARVVEDCRAAGLIKKWPRTIVVVAHFLRADLSTFKDFWHMKTRLDGQGGSVVGQIITDSGYGIDETAERKRRAPLKPITLLDRNRKSQKSIIQFVDTLFLSPNKSPLSALGVMLGLSKVEIPDGYSIERMDELLAGNKEAFEQYAQRDAEIAVKYAQKVRDFLSGQFGLPKLPRSLGAVGVSVFRRQLKGANIDYMTAFGLENAKLERWNAGTGKVTTKSVTRPSPARGLYEDLAIRCYHGGRNESFMMGPTPIGDWYDWDLKGAYTTGLCDLLVPDYANMYTSSDPQDFIGHVMGFAYVEFAFPTGTRFPCLPVRSEQYGLRFPLTGLAFVTAPEIELALSMGATIDIKHGVIVPWVSESQPLFENFTRLIQRLRREYPKKSLEEVMVKEVGNSLYGKLAQGLRGKSTFDTATGTSEKIGHSAVTNPYMAAHTTGLIRAVCGELLHRIPTHRAVVSVTTDGFLTDAPLEELDQTGPLCRRYQALCQQLHGDESGEPVPMLELKHHARQIVSIKTRGQCTAIQGDTPPVLAKAGVKCAGTTEEQNAWILRLYLDREPGQKIDASHLISLREQWLTESDLIEINKQIRLPYEFDQKRQLVNPRIVEVAGGSHIACDTVPWGDAGMADHCRARFDGWREDNCLKTLEDWASWDDYYESALALQGSKMRVREDGSLGILARILTRSLVQKAWFAHSMTYGEISALLTSVGLPVTVDTCKNSKRAALPENVVPVTGEVLRVLALLLRQVPEYPLEPLFKPERLEEVKRRLNSMEISHE
>NZ_CP034967.1|WP_164536996.1|2724132_2724858_+|hypothetical-protein
MGMVRVKKLVLAASVSLLMAPAAQAGLLSKWDELTVKGGELESCPGVTLEQQADSFFKDPEWSAGKAADGRKLVNVSGTFTYGDRPVRGLLQMWIQGEEFSVEALEINGQPQPDVMIDALLEKMCEAAQSQQPKGVTERTQARADLPFVGKRRFNFSGGSGTAEFITIQSNGHTVVESCGSECSIDFEGPFTNPLKTQYGVYRVEAKRIFELDEKGQGKTCQKELGDPRDTKCGVELYVAQ
>NZ_CP034967.1|WP_164536995.1|2723500_2724145_+|TM2-domain-containing-protein
MGSPTITKLSDLVLRSHADYETVFEHVAAHLQAEGGTIKVVDRAKGTLEASWKYGINPFGLRVTVHFSSPEEGIVELSLTGSFVDAIDTWGTAKKKAKAIAEVLPLPIDAAAWPIREQASVPASTQPAPAGGTVHHRGKRKVLMALLVFFGGGIGLHKFYAGNWGWGLIYLAACTTGIPVLLSLVEFIKVLCLSQEEFDKRYNYQAVRAFQWVW
>NZ_CP034967.1|WP_164536994.1|2722526_2723408_+|WYL-domain-containing-protein
MAEHDTLAQRLGVILTKLNNGQRLVISELAHEFNVSARTIQRDLNVRLAYLPLERDGQTYWLDPSYLGRTTTPAILRLCEQLGAKALFPDDHESLIKLWLNPASTPVFVLAGFQLDEDDSHHQWLKPLAKAISQQLKVRLSWVGEQAEQEIEPYRLVNKRGRWYLAGVMADTPFIEPLSCIANLQQIKTPATISESQQQLLQHLIEQEAIPTHEVVIKAASPIAHEFKLRNILPEQALIRELEDGSILLASRVFDGAQLLPVIKTYLPHLEVISPAGIQALVKRDLKTLLSRM
>NZ_CP034967.1|WP_164536993.1|2721073_2722306_+|site-specific-integrase
MANAPSRFRFTQKAIEALPPNPPHARSTEAEYSDTQIPGFKCLVGKGEGSKKFLLRYLWQGRKRAISIGRFPDVDLNTAREIATDYKRLLSQGIDPKQQKEDKRQELTLTELFEQHYFPYAMHHKRSWRDDAQRFRDHLKPALGSRLLSEINLEQGQALQTNLLSKVKPATNNRITTLLKAILTWSVRMGYLEQHPMRHLKSLTENNQRTRYLDKGEIRRLFMAADIDENRYAGQYVKLLLLTGLRKDELRLAKWEHLDQSQLTLFIPHTKNGKSRILHLNHMAMQILKETHPIEGNPYLFPGQKQGLPLNNVTRPFNRMLKRARIEGPVCIHTCRHSVAALIVSSGGTLYDVQAQLGHASSQTSQRYAHLHASRLRHTSTQVANCVEQALIPSNTAHSALPQLSQNGGI
>NZ_CP034967.1|WP_103252512.1|2720320_2720767_+|DUF2787-domain-containing-protein
MKPTLVITGLPVRISHDLKTLLEQAISSALEDFPDEIPDGTTPAALTLNYRDPDYSATTGGYHPVEIRLERWDDGWHLRYVTDFAYVGQGWCTELAKELDFDFSMGEYTHSLMGKMSLAEVHEWFELWQLNFCCYAQMDVFTLTVTPD
>NZ_CP034967.1|WP_164536992.1|2719764_2720262_+|hypothetical-protein
MSTKTDKQAAKQQVNTTATAKFDGIQASPAKEVLVSGVATLLSPGSTTTVGYEIGHEPEQAELLIRLTGSSGGGLCSKEWFGLAQVVDLLNEQQPDKAFTSGLFKVIWHFKGSSNNAGFLAAVLRHLELTKAAPDVRFGHLITGKHTEWFDELKTKLPAETNTAQ
>NZ_CP034967.1|WP_164536991.1|2719218_2719743_+|hypothetical-protein
MDEFIQEGKYASHETLKGYAYSWQTLSFLMQEVITNGMYVPEFLPDENQPVLLVVIKEATVLKAKSLHSEAPEVLISIASHTGESVRDDDNGYYADYWRLAAGTIKLIDCAEDAVFWLPLPAAGAWEAYRFSGYGSPFDALSAPLPVFQHLAFALKPDQTLPDLGTTIYLKSTI
>NZ_CP034967.1|WP_164536990.1|2718987_2719206_+|hypothetical-protein
MFIHQILSKQYAAVSIKPMRDGSIDFTVKGSTKGAIKGAITGAGIGARGGIPGTVAGTIIGGTIGYITGPAD
>NZ_CP034967.1|WP_164536998.1|2730593_2731844_+|tyrosine-type-recombinase/integrase
MAKDLLSDNKIKAAKPKEKDYTLSDGEGLQLRVSVQGSKLWVFKYYRPADKTRTNMSFGSYPEVPLAKARELRQGARSLLAQGIDPKAHRDEQAQAAADQQAANSATFERMAAKWLELKSHSVTPRYASHAWRTLQLNILPHIGSLPIDQIRAPQVIELLRPLEAQGKYETVHRLCQRVNEILDYCVNHGLLNANPCTAIHKVFKKPAGQHMPTIKPSELPQLMADIANGSLSNTTRGQIEWSLHTLVRPSESAGTRWDEIDFDGKVWNIPADRMKMSRPHRVPLTDQAIALLEFMKPISGHRPFVFPGDRDPLGHINPQTANAALKRLGYGGRLVAHGLRSLGSTILNEHGFNPDAIEAALSHADENEVRRAYNRSDYFDQRVTMMKWWSEHIEQASHGHVPLSSVKKTVSLVHR
>NZ_CP034967.1|WP_139460606.1|2732117_2732390_+|AlpA-family-phage-regulatory-protein
MKTKSTRSTHIKEAEHLHAAPHAKPLSSTEPSFRFLDIKEVLALIPVSKTTWYDGIRKGIYPKKCSLGGRRVAWRSCDIEDLMQKLVGGM
>NZ_CP034967.1|WP_164537951.1|2732422_2733283_+|hypothetical-protein
MIAMGVKPSRALSPTPGQVLRFHIQGDRPGTRNGWLITDELGNHAAFGSWKTGIKCVWRPIGPAIPSYIRAQLTQQAKAAEANRLAEAQAKALKEAKEIWGAAEPPYQHAYLARKQISGVGARQFGNRLIVPVFNARSQLLSLQDIDESGNKRFHRGLSLKGGFLLLGPSPKSDAPVLLCEGYATGATLFENLGIPVAIAFSAGNLLEVGRIIRTLYSSKLWVCADNDHATAGNPGLTKARTAAYQLHGRLIVPPTIPGITDFNDLFCLNGKAALFASVEAAPPAH
>NZ_CP034967.1|WP_164536999.1|2733363_2735067_+|DUF927-domain-containing-protein
MNTRRYDLKVEPFQLGPIEFQDGLYCVTTDKGQDDVWSRIGAPLWVIASGSDTAGLGWGIQVNWYSPDGRPQEAFIRDVHLLSDGREALMKLMDGGYRFNLGMKRQLIDYLNSKPTDNTRIRHDRLGWIPDTHIFMFGDGAVGYANAVKYIYTGHTPIQSDVAGTLDEWRDEVAALCLGNSRLLLSTSLAFAGPLLRLTNQSSFGVHLVGPSSIGKSTAMLVAASVLSKPANKIQTWNATKVGLETTADLCNDSTLFLDEIGQADPHVLGDTIYMLANGEGRARANADLSRRAKLQWRTTFLSNGEVDLEHSLASVGKRHKAGHDVRMINIEADTDRHGIFEELHGHPSGASLSKTLAERTTRYHGVAFRSFVEELTLDIDGAQAFVDEHRADMMRRLGAKECDGQVQRVADAFGLISAAGELANRFGITGWPAGSVAAVVEQLFRKWLARRGTSGSLEEANIIEQLVELLERRRGQFLADGPNVTKLGETYGYTTSLELHLYVDGFKQTFIGFNANYVHKVLRKHGILTHGTGRNLPRHKKSRVYQLSLDKIADAHDRLLSEQGGE
>NZ_CP034967.1|WP_164537000.1|2735109_2735616_-|hypothetical-protein
MKVNLDLIERLFGKSGRSIQRMLDNGQLTKEELLDFSLFVASLTVATGGILSKPLMDSIKWGLSERIISGLNPSLLGLHVSHTQREEKVSVSAKRKARRVSLNGDEVLELAYLMAIADEHFFEQLRGRVETDLRERVWSQEELVAQLTHKRQHWLEEEGADEPQSPLH
>NZ_CP034967.1|WP_136501387.1|2736135_2737395_-|translesion-error-prone-DNA-polymerase-V-subunit-UmuC
MAIALVDVNNFYASCERLFRPELRGRPIVVLSNNDGCVVSRSPEAKALGIKMAGPYFKIREQFEAHGGVAFSSNYALYGDMSGRVMSTLETMAPELEVYSIDEAFMALSESFAGDLTAYGQQIRQRVWQWTGLTVGVGIGPTKTLAKLANYAAKKWPATGGVVDLRDELRRARLMAITPVDEVWGIGRRLGAKLVAQGINTVADLVASDAKGLRAQYGVVVERIVQELRGLPCAELTVEPAAKQQILSSRSFGERVTDRGEMAQALSGFMARAAEKLRAEGMCCQRVHLFVRTSPFDERAPYYSEQAGVRLVCPSDDTRLLLQQVNVLLPQIWRDGYRYQKGGVMLSEFTPKGQQQADLFAPSSAQSDALMAVMDQIKAKGLGRVGFASQGTGSPEWMMRQEHLSPCYTTRWEDLPVAR
>NZ_CP034967.1|WP_164537001.1|2737375_2737819_-|translesion-error-prone-DNA-polymerase-V-autoproteolytic-subunit
MTLLTPDPSPAEVTIPLFLHRASCGFPSPASDYLEGKLDLNTHCVAHPAATFYLRAEGESMTGVGIFPGDLLVVDKSLTPRHGDVVIAQLDGGFTVKTLQLKPRLRLLPANPAFAPIDPCMSLSLELFGVVTHVIGNLRQRDGYSAR
>NZ_CP034967.1|WP_164537002.1|2738179_2738629_+|hypothetical-protein
MPEQTESWLAYRELATHILDPLVETFGHPLLTYGFCGVTLRKAILSNASPGIAPTLDQHAACELNQRGRVVCPRQGAAVDLIYPGKNSYQIALWLAQHTPFDRLYLYGPDRPLHISYGPEQNRALVELTTHHGRRMPKRLTLNQLKGMC
>NZ_CP034967.1|WP_164537003.1|2738628_2740653_+|DNA-phosphorothioation-associated-putative-methyltransferase
MLTPERFTQLVATLPYKKVLPDAVYLHKETLATTSPQLYRFVCAVAQALKLPECEWDLVKLAKQDFRLSLLSYPTFFEEAYPSLKQSVTVDLAKLSHNVTCYDSQDNPPILHRKECMLTPDHPLAESCRQITEEGELAGLYDHPRMIGFKASWERLIARHGYQLVDGRLFRISALPPEEGGPQIDRHKTALVRHELSAPMKMLARHGYLNGDYALFDYGCGRGDDLRELEAHGIDALGWDPNFRPDGEKVVSHLVNLGFVINVIEDQDERMEALLGAWELTQTLLVVSAMLANDSFIAQFTPYKDGVITSRNTFQRYYNQSELKHYIDRTLDENAIAVGPGIFYVFKDKLEEQRFLAQRQRRNHSWQQLTSPTPNHQAAAALLITRHQPLFEAFWQRALALGRIPANDEFEQSDELREIAGSHRKAMTLLGQHFDLAQLKQAELERQQDLLVYLALNLFGKRQAYTQYPSELQRDIKAFFGGNPQAQQTAKALLYQIADIPLINQACELAHQQLPNSLLYPSHSLLLHKCFVAQLPPLLRVYLGAACQLYGDLTDIDVIKLHIRSGKVSLMGYDDFSKPIPHLVERVKIKMADQEVDFFDYINEQTRPPLLNKSYLMAPDDPSFKAQRALEQRLSKLLRMDLETEHHLSRKQYESALKEQKRRISGFRICSVKE
>NZ_CP034967.1|WP_041209432.1|2740787_2741873_+|DNA-sulfur-modification-protein-DndB
MNHFDADYCYSFPAVRGIQAGRPFYIATCPMRIIPKIFNFDESEVPPELRAQRTLNKSRIPEMVRYLLENPKDYVFSALTASIAVDVEFAEHPGSNNLGTLRVPMDAQILINDGQHRRKAIEEALVERPELGQDNIPVLFFVDEGLTRSQQMFADLNKYAVKPSPSLSTLYDHRDQGSELARHLATSMEPFVGLTEMEKSSISQLSSKLFTLSSIKQATRALLGKGPKEGCTDEEAKLAALYWKAVYDQMPDWQMASRKEVSPAQLRQEYVHAHGVGLQALGMLGRFLISEHPDTWQADLGKLKTIDWRKTNPEWIRRTMSHGKLSKSTTALQLTCNALKTSLNLPLTPEEKVLEAQVVSQ

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP034967_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP034967_6

3644953-3645056

Orphan

Consensus_repeat	Method
GTGGAGCTGCTGGGTATCCAGTAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP034967_6

>merge|NZ_CP034967|6|3644953-3645056|CRISPRCasFinder
GTGGAGCTGCTGGGTATCCAGTAACCGCGCAGGATGCTCCAGTGGCAATATCCCACTGAACGCCCGTCCTGATCTTCGACGTGGAGCTGCTGGGCATCCAGTAA

>NZ_CP034967|6|6|3644953-3645056|CRISPRCasFinder
GTGGAGCTGCTGGGTATCCAGTAA	CCGCGCAGGATGCTCCAGTGGCAATATCCCACTGAACGCCCGTCCTGATCTTCGAC
GTGGAGCTGCTGGGCATCCAGTAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP034967.1\|WP_164537428.1\|3648706_3649933_+\|exonuclease-subunit-SbcD	unknown	unknown	gnl\|CDD\|182871
NZ_CP034967.1\|WP_164537426.1\|3645110_3646892_-\|gamma-glutamyltransferase	unknown	unknown	gnl\|CDD\|223482
NZ_CP034967.1\|WP_164537979.1\|3635174_3635741_-\|HTH-type-transcriptional-regulator-PuuR	unknown	unknown	gnl\|CDD\|182158
NZ_CP034967.1\|WP_164537431.1\|3654702_3654945_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP034967.1\|WP_005359039.1\|3656816_3660146_+\|mechanosensitive-channel-MscK	unknown	unknown	gnl\|CDD\|236892
NZ_CP034967.1\|WP_164537423.1\|3632934_3633363_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|236715
NZ_CP034967.1\|WP_164537425.1\|3637718_3639008_+\|4-aminobutyrate--2-oxoglutarate-transaminase	unknown	unknown	gnl\|CDD\|236032
NZ_CP034967.1\|WP_031227651.1\|3655253_3656666_+\|pyruvate-kinase-PykF	unknown	unknown	gnl\|CDD\|181699
NZ_CP034967.1\|WP_005338239.1\|3641388_3641529_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP034967.1\|WP_005350107.1\|3647083_3647995_-\|recombination-associated-protein-RdgC	unknown	unknown	gnl\|CDD\|234726
NZ_CP034967.1\|WP_005359067.1\|3639374_3640724_+\|APC-family-permease	unknown	unknown	gnl\|CDD\|223605
NZ_CP034967.1\|WP_164537432.1\|3660554_3660959_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP034967.1\|WP_164537427.1\|3648174_3648603_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|236715
NZ_CP034967.1\|WP_005359054.1\|3643182_3644331_+\|sodium:phosphate-symporter	unknown	unknown	gnl\|CDD\|162157
NZ_CP034967.1\|WP_164537430.1\|3653771_3654536_-\|dioxygenase	unknown	unknown	gnl\|CDD\|153375
NZ_CP034967.1\|WP_064338446.1\|3641528_3642875_+\|APC-family-permease	unknown	unknown	gnl\|CDD\|223605
NZ_CP034967.1\|WP_129504457.1\|3633851_3635129_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223737
NZ_CP034967.1\|WP_164537424.1\|3636130_3637594_+\|NAD-dependent-succinate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143421
NZ_CP034967.1\|WP_005338226.1\|3633475_3633724_+\|DUF3297-family-protein	unknown	unknown	gnl\|CDD\|371696
NZ_CP034967.1\|WP_164537429.1\|3649929_3653682_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|182330

Protein	Function_ID	Function_description	E-value
NZ_CP034967.1\|WP_164537428.1\|3648706_3649933_+\|exonuclease-subunit-SbcD	gnl\|CDD\|182871	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional.	1.13075e-73
NZ_CP034967.1\|WP_164537426.1\|3645110_3646892_-\|gamma-glutamyltransferase	gnl\|CDD\|223482	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism].	0
NZ_CP034967.1\|WP_164537979.1\|3635174_3635741_-\|HTH-type-transcriptional-regulator-PuuR	gnl\|CDD\|182158	PRK09943, PRK09943, HTH-type transcriptional regulator PuuR.	7.29387e-109
NZ_CP034967.1\|WP_005359039.1\|3656816_3660146_+\|mechanosensitive-channel-MscK	gnl\|CDD\|236892	PRK11281, PRK11281, mechanosensitive channel MscK.	0
NZ_CP034967.1\|WP_164537423.1\|3632934_3633363_+\|N-acetyltransferase	gnl\|CDD\|236715	PRK10562, PRK10562, putative acetyltransferase; Provisional.	8.29112e-43
NZ_CP034967.1\|WP_164537425.1\|3637718_3639008_+\|4-aminobutyrate--2-oxoglutarate-transaminase	gnl\|CDD\|236032	PRK07495, PRK07495, 4-aminobutyrate--2-oxoglutarate transaminase.	0
NZ_CP034967.1\|WP_031227651.1\|3655253_3656666_+\|pyruvate-kinase-PykF	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0
NZ_CP034967.1\|WP_005350107.1\|3647083_3647995_-\|recombination-associated-protein-RdgC	gnl\|CDD\|234726	PRK00321, rdgC, recombination associated protein; Reviewed.	0
NZ_CP034967.1\|WP_005359067.1\|3639374_3640724_+\|APC-family-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	2.79951e-45
NZ_CP034967.1\|WP_164537427.1\|3648174_3648603_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|236715	PRK10562, PRK10562, putative acetyltransferase; Provisional.	1.09781e-34
NZ_CP034967.1\|WP_005359054.1\|3643182_3644331_+\|sodium:phosphate-symporter	gnl\|CDD\|162157	TIGR01013, Sodium-dependent_phosphate_transport_protein, Phosphate:Na+ Symporter (PNaS) Family. [Transport and binding proteins, Cations and iron carrying compounds].	1.67156e-43
NZ_CP034967.1\|WP_164537430.1\|3653771_3654536_-\|dioxygenase	gnl\|CDD\|153375	cd07363, 45_DOPA_Dioxygenase, The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine. This subfamily is composed of plant 4,5-DOPA Dioxygenase, the uncharacterized Escherichia coli protein Jw3007, and similar proteins. 4,5-DOPA Dioxygenase catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine (4,5-DOPA). The reaction results in the opening of the cyclic ring between carbons 4 and 5 and producing an unstable seco-DOPA that rearranges to betalamic acid. 4,5-DOPA Dioxygenase is a key enzyme in the biosynthetic pathway of the plant pigment betalain. Homologs of DODA are present not only in betalain-producing plants but also in bacteria and archaea. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon.	3.52296e-102
NZ_CP034967.1\|WP_064338446.1\|3641528_3642875_+\|APC-family-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	2.1701e-41
NZ_CP034967.1\|WP_129504457.1\|3633851_3635129_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	7.41243e-78
NZ_CP034967.1\|WP_164537424.1\|3636130_3637594_+\|NAD-dependent-succinate-semialdehyde-dehydrogenase	gnl\|CDD\|143421	cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like. Succinate-semialdehyde dehydrogenase, mitochondrial (SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent oxidation of succinate semialdehyde (SSA) to succinate. This group includes the human aldehyde dehydrogenase family 5 member A1 (ALDH5A1) which is a mitochondrial homotetramer that converts SSA to succinate in the last step of 4-aminobutyric acid (GABA) catabolism. This CD also includes the Arabidopsis SSADH gene product ALDH5F1. Mutations in this gene result in the accumulation of H2O2, suggesting a role in plant defense against the environmental stress of elevated reactive oxygen species.	0
NZ_CP034967.1\|WP_005338226.1\|3633475_3633724_+\|DUF3297-family-protein	gnl\|CDD\|371696	pfam11730, DUF3297, Protein of unknown function (DUF3297). This family is expressed in Proteobacteria and Actinobacteria. The function is not known.	6.84857e-46
NZ_CP034967.1\|WP_164537429.1\|3649929_3653682_+\|AAA-family-ATPase	gnl\|CDD\|182330	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional.	1.24403e-83

>NZ_CP034967.1|WP_005359054.1|3643182_3644331_+|sodium:phosphate-symporter
MQHHHSLSQPPATRALFNWMSVIVLVYLILVAVGAISHGFKDFSGGAEGAAQIFAFANNPFVALLLGILATALVQSSSTVTSVIVGLVAGGLPISMAIPMVMGANLGTTITNTIVSMGHVRDRAEFRRAFAAATVHDFFNLLAVFIFLPLELMFGLLQHSAEWLANLLVGSANMSMKGMDFMKPLTAPAQQLIDSAVAFLPGKGAAIATIVIGILLILACVTYLGKVLQQVLVGRAKEVLHKALGRGPLTGITSGALVTIMVQSSSTTTSLMIPLAGGGVFSTRQLYPFTLGANIGTTITALLAATAISGAGAQLALTIALVHVLFNLFAVVIIYGIPFLRDLPVRAAEGLARVGSENKLLALGYVTGLFFALPALMMVAAK
>NZ_CP034967.1|WP_064338446.1|3641528_3642875_+|APC-family-permease
MASQNAKLLKTLTLTQVIVMGLAYLTPMAVFDTFAIVGDITDGRVATAYMLALGGILLTAFSYGHLVRKFPSAGSAYTYAQKVFNPYVGFMVGWSSLLDYMFMPMINILLAKIYLTAMFPGVEPWVFIFGLVTVMTFLNLRGINLVANFNGLIVVIQLAIITLFIGLMAWGIYHGEGAGTLMSSRPFHFESAQLVPLFTGATILCFSFLGFDGLSSLSEETPNAGKVIPKAIVLTALIGGIIFVVVSYCLQLYFPSLSRFQHPDAVLPEIALYVGGTFFQSVVLVCTTVAVLASGMAAHAGVSRILYVMGRDRMIPERVFGYIHPKYRTPAINVLMVGGLALSAVSFDLDTALALVNFGALVAFSFVNLSVIGQFWVREKRNKTLKDHVIYLLMPLLGAATIGALWINLEQSSLELGLIWAGLGATYLFLRLAVFRIPFRQYEEAADA
>NZ_CP034967.1|WP_005338239.1|3641388_3641529_+|hypothetical-protein
MGRFNAFLPVQPGMRLPGALDVQACESIVSLRSLQARAAALIEEKA
>NZ_CP034967.1|WP_005359067.1|3639374_3640724_+|APC-family-permease
MAAQQVGLKKTLKLWQVVVMGLAYLTPMAVFDTFGIVTEITEGHVPTAYLFALIGMLFTALSYGHLVRKFPSAGSAYTYAQKVFHPYVGFMVGWTSLLDYMFMPMINMLLAKIYLEALFPNVEPWTYIFGLAAVMTALNLRGIKLVANFNSLIVVMQFSIIAIFIGLIAWGVHNGEGLGTVASSRPFFSEQIQVSPLLMGASILCLSFLGFDAISTLSEETPDADRVIPRAIVLTALIGGVLFVTTSYFLQLYFPDISRFQHPDAVLPEIALYVGGKLFQAVVLVCTTVAVLASGLASHAGVSRLLYVMGRDRALPARFFGYIHPKWQTPAFNVLLVGLLALSAVSLDLEMALALINFGALVAFTFVNLAVIAHFYVKLGRNKCLKDHLMYLLLPLCGAACIGVLWLNLEPSSFELGLIWAALGAIYLFLRLTVFRIPLHTADKVEIAQ
>NZ_CP034967.1|WP_164537425.1|3637718_3639008_+|4-aminobutyrate--2-oxoglutarate-transaminase
MSQSESNKAWQARREAAVVNGVSTLLPVFIDRAQNAELWDVEGNRYIDFASGIAVLNTGHNHPKVVAAVRDQLEKFSHTCFQVTPYPGYIELAEKLNALVPGPTPKRTLFLSTGAEAVENAIKIARAHTGRSGTIAFKGGFHGRTMMGMALTGKVVPYKTGFGPFPGEVYHIPFPADYLGVSEEDALHALELCFSADIEPSRVAAIIIEPVQGEGGFYPASPSFMQKLRSVCDQHGILLICDEIQSGFCRTGKTFATEYAGIEPDIMTLAKSLAGGFPLSAVVGKAEIMNSAKPGGLGGTYAGSPIACAAALAVLQVIDEEKLNQKALDQGEQIKAGLERIAERFDCIGQIRGPGAMVAMELVKRRDASQPDPDLTKRLVAEAGKRGLVLLSCGVRANVIRFLAPLTAPAAVIDEGLQLLEKSLEAVLA
>NZ_CP034967.1|WP_164537424.1|3636130_3637594_+|NAD-dependent-succinate-semialdehyde-dehydrogenase
MSATSSNQSLIKSRAYIDGQWCEAASGRTFEVTNPATGAVITQVPDMNEEDTRRAIAAAHAAQPAWAALTAKERSNKLYAWFAAITAHSDELARIMTCEQGKPLAEAKGEVTYGASFIQWFAEEGKRAYGRTIPGFSGDRRLATIKQPVGVVAAITPWNFPIAMITRKAGPALAAGCTIVIKPAAETPLCALALAVLAEQAGIPAGVINIVTSHQPSAVGNELCNNPTVRKLSFTGSTRIGKLLMRQCADTMKRLSLELGGNAPFIVFDDADLDAAVAGALASKYRNAGQTCVCANRILVQASVYDAFAEKLTAAVAAFKVGDGMSEGTQIGPLINPAAASKVAELVQQSVAAGAEVLLGGEPHPAGPLFYRPTILGKVARDNPILQEEIFGPVAPLVRFESEAEAIALANDTPYGLAAYFYGRDIARVWRVAEQLEYGMVGINEGIISTELAPFGGIKESGLGREGAAEGLEEYLETKYLCFGAIR
>NZ_CP034967.1|WP_164537979.1|3635174_3635741_-|HTH-type-transcriptional-regulator-PuuR
MQLVPQSGARTMGERLAAVRHQLGLSQRRAAELSGLTHGAICMIEQDKVSPSVASLQKLLTVYGLPLSRFFAEEESRPCSVVIKAEQLIELGSQGVSMKLVHNGNNRRQLGFMLETYPPGTDTGGQVKHQGEEVGTVLEGSVTLTVAGQSYQLEAGDSYVIDTGEPHSFSNPSGQTCHIVSAHTPASF
>NZ_CP034967.1|WP_129504457.1|3633851_3635129_-|FAD-binding-oxidoreductase
MTEHVNSYYAASANKHAPYPTLTEQLECDVCVIGAGYTGLSSALHLVEKGYKVVVLEAARVGFGASGRNGGQIVNSYSRDIDTIEANCPPDQARLLGSMLFEGGQIIRERIKRYNIQCDLQEGGVFAAETEKQLHELKSQYARWQKWGNDQLELLDAKGVREVVASDRYVGALLDKSGGHIHPLNLALGEAEAIRIQGGQIFEQSAVTSITPGQPALVKTAKGAVKARFIVVAGNAYLGNLVPELAAKSMPCGTQVIATEVLGEERARSLLPQNYCLEDCNYLLDYYRTSGDHRLLYGGGVVYGARDPADIERLIIPKMLKTFPQLADVKVEYTWTGNFLLTLSRLPQFGRIGPNIYYMQGYSGHGVTCTHLAGKLLSEVLSGQAERFDAFAKLPHYPFPGGRLFRIPFTAAGAAWYTLRDRLGV
>NZ_CP034967.1|WP_005338226.1|3633475_3633724_+|DUF3297-family-protein
MSDTSTKPALPDHLSCNPRSPHYVAACFEHPIGIRLNGKERTDVEEYCISEGWVKIPSPKALDRRGQPILIKLKGTVEAFYS
>NZ_CP034967.1|WP_164537423.1|3632934_3633363_+|N-acetyltransferase
MIRPLLTTDLDAAVELWYQASVQAHDFIPAAFWHEQRAAMRDIYLPASKSWVYEEDGQLLGFISWYQGSVAALFISPDHQSHGLGRQLLEHLKAQYDRLELTVYAENEQARRFYSRNGFKEGEQQLCEHSGYPELVMHWQRG
>NZ_CP034967.1|WP_164537426.1|3645110_3646892_-|gamma-glutamyltransferase
MLRKPLGLAVALALLAGCASDNGFHYTPPAQTLIAPEAASGWTDKQGWQGHDFMVAAANPLAVDAGYQIIKAGGSAVDAAIAVQLVLTLVEPQSSGIGGGTLLLVWDGRKVSAVDGRETAPAAATDQLFMQDGKPLAFYDGVVGGRSVGVPGTLRALALAHQRYGKLPWAVLFEPAITLAEQGFVISPRLATLLAKDPYLARDPEARAYFYQADGSPKMAGTWLTNPALAKVLRTLATEGADAFYRGPLADAMVAKVRQHPTNPGVLSATDLASYQAKVRDGLCFDYRQSKICGFPTPSSGTLALGQIFGMLESRDMAALKPITTKEGGLAASSEAIHLYSEAARLAFADRNQYVADSDFVSVPVQGLLDKGYLAERGKLVGQHSMGIAKPGTPPLALARGKDATPELPSTSHVSIVDKAGMAISMTSSIEDGFGSRQMVNGYLLNNQLTDFSFTSVDAAGLPVANRVEPGKRPRSSMSPLLVFDKPSGELTMTLGSPGGSAIINYVGKTLLGTQDWGLNLQQAINLPNFGSRNGPTELEAGRTPMSVVEGLKARGHEVVLNEQTSGLQGVERNAGGWFGAADPRREGIAKGE
>NZ_CP034967.1|WP_005350107.1|3647083_3647995_-|recombination-associated-protein-RdgC
MWFKNLQIYRFTRPFDLTVDQLETQLEACAFTPCGSQDISRFGWVKPLGKFGSTLTHSASGHILICARKEEKMLPGTVVKEMLAEKVEAIEFEQGRALKKKEKEALKEEILHTLLPRAFSRTSQTFAWINPADNLMVVDAGSAKKADDLLALLRKSIGSLPVVPVALKNPPEITMTEWLNEGNLPASFTLEDEAELRSAMEHGGIIRCKQQDLMTDEIKNHLANDKLVTKLALNWGETVSFVLGDDLSIKRLKFSEELREQNDDVTSEDPAARLDADFALVTSELSQFIPALFAALGGEEQSI
>NZ_CP034967.1|WP_164537427.1|3648174_3648603_+|GNAT-family-N-acetyltransferase
MLRPSRPEDMEEIVEIWLLASLQAHDFVDASCWWQAQEDLRTRYLERAAIWVFEERGDLLGFMALVDNFLAALFVRPDRQGRGVGHALLQEAKRQGASLHARVFVENDQAVRFYRRHGFVIKGEESDPLTGHPQYKMCCEPA
>NZ_CP034967.1|WP_164537428.1|3648706_3649933_+|exonuclease-subunit-SbcD
MKILHTADWHLGHQLHGHDRRFEHDAFLYWLSDTLKAREIDALLVAGDLFDTANPPASAWQQLYRFLARLRAEMPHLNMVLIGGNHDSPSKLDAPHELLRAFELHLVGSISRDSEGKLETDRLLVPLQDREGNIAAWCAAVPFLRSSDLRVEQLAEGQDRLIEGVRQVYAEVLAEGRARCGEALPLIAMGHAYLAAGQLSELSERRVLGGNQHALPAELFAGADYTALGHLHLAQSPATGVHYSGSPLPLSLAEANYNHQVLEVTFAEGKLAGLERIPVPRAVEMIRLPQSSLDDALKAIASLELPDCPQEAQPFLEVRLLLPKPEARIRERILAAIADKPVRLARISTQYQGSGEGLADGRERRRLDELSPTEVFRLCYQRQFEGEPEAGLVASFEEILEQVKESNQ
>NZ_CP034967.1|WP_164537429.1|3649929_3653682_+|AAA-family-ATPase
MKILSLSGENLASLTGPFTIDFTRGALGAAGLFAITGNTGAGKSTLLDAICLALYDEMPRFIANRKNVAEVGRMDDEEKLKANDVRGILSRGHASGFAEVQFRGCDGRIWLARWAVRRARNRSEGRFQAQERTLTDVESGQVFSGSKRELQDRIDELVGLSWEQFRRAVILPQGEFAAFLKSDANERSALLERMTGTELYSAISIQTYERAREEQQKLATIAQRLGDVELMDEATREQWVSQQVSLSTTLKHEQQQQQLMQDLRDLNSRIAAQLQGCAEGQAALDAALQAHGAAAPERDEFARAEQAQVARADHNELARLTLEVQQQEKVIAELGPELAKLEAQTQQSALTEQQLLAEKIAAEREWGALQPELKRAQELDTRIREKVQQLQKIQQEGAQEREVQLTLEQGWREQSRQVELLKQQHQQWGLWLEEHKELAPVARQWQPLLTAMQDWAEDADKLQQLLTLRDHKLRALQQLQRQLEQGQQERDYWQHEQARLQQQQNELQEQQWESRLAKAQEQWQQQTEQLGQLRQLLELADYGRNHGEQHGRLQQEIAQLEQALGKLATLSEELAPARERLALQRDEARHALEQSRAIASFEQYRHILSDGEPCPLCGAEEHPYSQSQPQVAGILGQLAERARSLELEWERLNHQYIQCESERQELARQLAVRQQHLPELEARAEQLTQRWLQLGGDTLLGHSLPLRQSPIEWNELMSTLLGRGQALEQGLAQSQQQLRQAQLGQQQLQGVRQQLSQLAAQHQQFDQQWQEADRQRIALEGEVKGMGEQEATLRQRLEQGAHRLDEQMGGQPWRQWLGSQQWHEWQRTCEAWLHGQSEWERLASEIASLTPALSAQEARLQTQRELLHKLERDYKEHEQQRQGLLTSRAACLNGEEIPLVESRWQQRLQQLASELEQMQSGARALRERQTELKTRLTHVEQEKQTSSRRKREVLGRWAAHATTLGIAEYDLRRLLAISPDELKARRTALQGLEDALGEARTRLAERQRALALEESKRDRYREHHPELAALPDAELSEQLVALDARCRALEEQLFEYKSKLAQAEAAALKAGSLQQELAAQQAVADHWQQLCDLIGQANGAKFRTFAQSLTLERLLLEANAQLAELSPRYRLERVPGTDLALQVVDLDMGDEVRSVDSLSGGESFLVSLALALALSSLSSRQTQVESLFIDEGFGTLDPDSLDLALASLDSLQAAGRQIGVISHVQTLVERIGVQIRVEALGGGESRVVVP
>NZ_CP034967.1|WP_164537430.1|3653771_3654536_-|dioxygenase
MSLAPVWFISHGAPDLVLREQPATRFLRNLRLGELKGLVVISAHWFSRELQINVEPKPALMYDFYGFPEPLYRMRWPASSPEWLQQGVSDQLALAGLTATPVRRELDHGVWSPLSLIDPNSEIPLVQISIPASFTPAQLWQLGEVLGALRSQGIGILASGAITHNLRALAPEGSPVPEWASQFVDWLEQKMADEDRLALLDYRQQAPGAVESHPHDDHLRPLFVALGAADGVAPTRLHESWDGGSLYMGAYRFG
>NZ_CP034967.1|WP_164537431.1|3654702_3654945_-|hypothetical-protein
MKNSHETGWAFLLLGAALLLVQTLPASYWPDNARLLAIFSHPVKGEAAAEGLAWREWQDHSAATRMALRAARLQPEAPQR
>NZ_CP034967.1|WP_031227651.1|3655253_3656666_+|pyruvate-kinase-PykF
MKKTKIVCTIGPKTESKEMLAKMLDAGMNVMRLNFSHGDYAEHGSRISNLRAVMAETGKHAAILLDTKGPEIRTMKLEGGNDVALVAGQTFTFTTDQTVVGNKDKVAVTYAGFANDLRVGNRILVDDGLIGLDVIEITEREVICKVLNNGDLGENKGVNLPGVSIKLPALAEKDKRDLIFGCEQGVDFVAASFIRKKEDVLEIREHLKAHGGENIQIISKIENQEGLDNFDEILAVSDGIMVARGDMGVEIPVEEVIFAQKMIIAKCNKARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVTIMATICERTDAVMPSNLSAANDSNKLRITEAVCKGAVETSEKLDAPLIVVATEGGKSAKAIRKYFPKAWILAITTNKKTAAQLVLTKGVVAHVVDSIASTDDFYRIGKEAALEIGMGLKGDVVVMVSGALVPSGTTNTASVHVL
>NZ_CP034967.1|WP_005359039.1|3656816_3660146_+|mechanosensitive-channel-MscK
MPSIRFKRVSATLLPLLCLLASLCVPQAMAQDVPSRNAVQRALDGLGKSETLTVSQQADQKLLTETLGLLDSIDKEEAKAKTQAQRIRNLPTELREISAKLDALTKGKSAEQIKSEYASMSLAELDSRQPEVLANMQAAQEALGAIGSQLTSLQTLPERAQASMSRAYQRSQEIRTRLNAGESVSSAEKMKLGAELALLDLQLAHLQKELDNRTSMQDLAIKQRDYQSARLASEEQKLQLLQDQSSAKRLGDTEKTAEQTGELVATEDSPLVQKEQELNHQLSQQLIGATTSLNSLVQKNLQAKSWLERGIQTERNLNEQVQMLKGNLLLSRILYQLYQQLEAAPTIAVKNLEEQIADLHLAQFELSQQRDQLFQKNLYLDNLIAGSKDPVSEEDKESLAKLLDTRINLLDQLNRQLDSQLTNAISLQLTQQQLARVYASIEFTLQQHIFWVSSNKPIDSKWFISWPAQAYKQASDWVLKPDWKRWREELLGISLLAFPLLLIGGLLVWKRPALVEREKKITKDLGRFRQDSQWHTPRALLYTVLQRLPGSMFILAGGLLLTYCGLLSPKLMFQITLNLALGYLVFSVYLAVMRPGGIAETHFRIPKAELQAKRNSMRYIWLPLLPLIMLATKAVVEPSTLGNDVIGQAMTLTLLGLAAYLVFPISRARIKGEASMQKSLIAIALALAPVALIVLAVLGYYYTALKLTGRLIESFYLIIIWSLVYRTALRGLELAARRLAYRRAVAKREHKSSEDAEGGESIEEQPMDLEDVSQQSLRLTRTVLMLIFGVAFYWLWSDLVAVFSYLDSMVLWHRSEGTGANAVLFPISLSDVLIGFLLLGGAWSLARNLPGLLEVLVLSKLNLAQGTAYAITTMLNYVLIGFGSLTALSMMGVQWDKLQWVAGGLSVGIGFGMKEILSNFVSGIIILFERPVRIGDTVTIGSFSGTVSRIRIRATTLTDFDRKEVIIPNQQLMTERLINWSLSDTVTRVIVRVGVAYGSDLELTRTLLKQAADENSRVLKDPAPIVYFLTFGASTLDHELRFFVSELGDRNPAVDELNRKIDQLFRENGIEIAFNQMDVYIKNMQGEEQKVESNSAALPPPAEDGKQPA
>NZ_CP034967.1|WP_164537432.1|3660554_3660959_+|hypothetical-protein
MKYSLMVMGLAACLALSGCQNMDTKKVLIGAAALGAIGAAGYYAGKKHSDNKHEHDGQHDDSDDQHMATSKMPRYCSGEAASKFHVSPRDITTESAEESGHRYKVYGQYETDDDAVDFTCTFNHDGRFLSVVRS

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

981830 : 991121

Staphylococcus_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_164536183.1\|981830_984656_+	TMAO reductase system sensor histidine kinase/response regulator TorS	A0A1V0SGX0	Hokovirus	9.5e-46	31.5
WP_139743394.1\|984707_984992_-	hypothetical protein	NA	NA	NA	NA
WP_040068624.1\|985316_986570_+	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	3.0e-100	53.2
WP_005338880.1\|986720_987170_+	transcriptional regulator NrdR	NA	NA	NA	NA
WP_164536184.1\|987369_988479_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	2.3e-48	34.1
WP_043823065.1\|988534_989188_+	riboflavin synthase	A0A2I2L4R9	Orpheovirus	3.5e-20	36.2
WP_164536185.1\|989337_990447_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	4.7e-65	39.2
WP_005338866.1\|990650_991121_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	5.1e-29	47.3

DBSCAN-SWA_2

1452878 : 1459918

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_164536406.1\|1452878_1454054_+	DegT/DnrJ/EryC1/StrS aminotransferase family protein	A0A2K9L470	Tupanvirus	5.6e-101	48.3
WP_164536407.1\|1454114_1456076_+	polysaccharide biosynthesis protein	A0A2P1ELS8	Moumouvirus	5.8e-18	26.0
WP_164537916.1\|1456279_1457386_+	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	7.9e-97	50.9
WP_164536408.1\|1457385_1458273_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	2.4e-27	34.5
WP_164536409.1\|1458386_1459298_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.1e-103	63.4
WP_164536410.1\|1459378_1459918_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	7.8e-42	45.1

DBSCAN-SWA_3

1658274 : 1735432

Salmonella_phage(17.02%)

lysis,terminase,portal,tail,capsid,protease,head,holin,transposase,plate,integrase

attL 1729728:1729783|attR 1742785:1742840

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_164535787.1\|1658274_1659603_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_164536504.1\|1660017_1661196_-	MFS transporter	NA	NA	NA	NA
WP_164537927.1\|1661539_1662547_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA
WP_164536505.1\|1662708_1663512_-	2,5-didehydrogluconate reductase DkgB	A0A1V0SDE7	Indivirus	4.0e-34	31.7
WP_164536506.1\|1663577_1663874_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_005350859.1\|1664489_1664894_-	hypothetical protein	NA	NA	NA	NA
WP_043825711.1\|1665085_1665988_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_164536507.1\|1666159_1666393_-	hypothetical protein	NA	NA	NA	NA
WP_164536508.1\|1666586_1668563_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	5.1e-14	55.7
WP_139406514.1\|1668789_1670292_-	glycerol kinase GlpK	NA	NA	NA	NA
WP_069526680.1\|1670346_1671195_-	aquaporin family protein	NA	NA	NA	NA
WP_005337540.1\|1671684_1673043_+	glycerol-3-phosphate transporter	NA	NA	NA	NA
WP_005337538.1\|1673145_1673904_+	DeoR/GlpR family transcriptional regulator	A0A077SK06	Escherichia_phage	3.3e-22	28.6
WP_164536509.1\|1674221_1675709_+	glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_164536510.1\|1675815_1676904_+	glycerophosphodiester phosphodiesterase	A0A220BYK6	Staphylococcus_phage	3.9e-08	32.1
WP_005337529.1\|1677122_1677605_+\|protease	serine protease inhibitor ecotin	NA	NA	NA	NA
WP_005350885.1\|1677903_1678275_+	DUF413 domain-containing protein	NA	NA	NA	NA
WP_164536511.1\|1678274_1679147_+	HTH-type transcriptional regulator HdfR	NA	NA	NA	NA
WP_164536512.1\|1679318_1680260_+	hypothetical protein	NA	NA	NA	NA
WP_005350888.1\|1680405_1681596_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
WP_164537928.1\|1681710_1682214_-	DUF2062 domain-containing protein	NA	NA	NA	NA
WP_164536513.1\|1682207_1682726_-	DUF2062 domain-containing protein	NA	NA	NA	NA
WP_164536514.1\|1682753_1684955_+	DNA internalization-related competence protein ComEC/Rec2	NA	NA	NA	NA
WP_164536515.1\|1685059_1686823_+	lipid A ABC transporter ATP-binding protein/permease MsbA	W8CYL7	Bacillus_phage	3.3e-57	30.7
WP_164536516.1\|1686822_1687824_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
WP_005347033.1\|1687945_1688134_+	hypothetical protein	NA	NA	NA	NA
WP_128815636.1\|1688130_1688880_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA
WP_005337448.1\|1689092_1689737_+	UvrY/SirA/GacA family response regulator transcription factor	NA	NA	NA	NA
WP_164536517.1\|1689864_1691718_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_031227442.1\|1691917_1692472_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_164537929.1\|1693051_1694173_-	phage late control D family protein	E5G6Q3	Salmonella_phage	1.6e-97	52.6
WP_139461254.1\|1694223_1694715_-\|tail	phage tail protein	A0A077K9Y7	Ralstonia_phage	5.7e-31	57.9
WP_164536518.1\|1694727_1697094_-\|tail	phage tail tape measure protein	A0A2H4JE61	uncultured_Caudovirales_phage	3.1e-106	36.6
WP_108572652.1\|1697090_1697222_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_164536519.1\|1697230_1697515_-\|tail	phage tail assembly protein	E5FFG7	Burkholderia_phage	3.4e-20	56.3
WP_164536520.1\|1697527_1697665_-	hypothetical protein	NA	NA	NA	NA
WP_164536521.1\|1697725_1698244_-\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	2.3e-51	56.4
WP_164536522.1\|1698256_1699435_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	2.0e-143	64.7
WP_164536523.1\|1699603_1700194_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	5.2e-23	39.3
WP_164536524.1\|1700195_1701278_-\|tail	phage tail protein	A0A2I8TVA9	Erwinia_phage	2.3e-64	50.2
WP_164536525.1\|1701274_1701913_-\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	8.3e-59	53.4
WP_164536526.1\|1701909_1702809_-\|plate	baseplate assembly protein	Q9ZXK8	Pseudomonas_virus	6.2e-84	56.5
WP_164536527.1\|1702805_1703165_-\|plate	baseplate assembly protein	A4PE42	Ralstonia_virus	6.0e-22	51.4
WP_164536528.1\|1703161_1703707_-\|plate	phage baseplate assembly protein V	F1BUP5	Erwinia_phage	4.1e-30	42.5
WP_164536529.1\|1703780_1704233_-	phage virion morphogenesis protein	A0A077K9X5	Ralstonia_phage	4.7e-24	47.5
WP_164536530.1\|1704235_1704685_-\|tail	phage tail protein	A0A077K8R3	Ralstonia_phage	1.2e-27	44.7
WP_164536531.1\|1704780_1705254_-\|lysis	phage lysis regulatory protein LysB	E5G6N2	Salmonella_phage	1.6e-06	31.7
WP_164536532.1\|1705243_1705420_-	hypothetical protein	NA	NA	NA	NA
WP_164536533.1\|1705428_1706247_-	DUF3380 domain-containing protein	A0A2H4JGJ9	uncultured_Caudovirales_phage	1.4e-66	54.5
WP_164536534.1\|1706243_1706552_-\|holin	phage holin family protein	E5E3R8	Burkholderia_phage	6.7e-14	47.3
WP_073536721.1\|1706553_1706916_-	hypothetical protein	E5E3R9	Burkholderia_phage	1.2e-14	41.3
WP_159144636.1\|1706937_1707168_-	conjugal transfer protein TraR	U3PFL5	Vibrio_phage	1.7e-06	40.6
WP_159144500.1\|1707170_1707374_-\|tail	phage tail protein	A0A2H4J946	uncultured_Caudovirales_phage	8.9e-15	59.1
WP_164536535.1\|1707373_1707844_-\|head	head completion/stabilization protein	A0A2H4JCS4	uncultured_Caudovirales_phage	5.8e-25	45.2
WP_164536536.1\|1707949_1708201_-	hypothetical protein	A0A2H4P7H0	Pseudomonas_phage	1.1e-09	41.0
WP_164536537.1\|1708197_1708881_-\|terminase	terminase	A0A077K804	Ralstonia_phage	4.8e-44	46.8
WP_164536538.1\|1708891_1709917_-\|capsid	phage major capsid protein, P2 family	A4JWP9	Burkholderia_virus	8.9e-111	59.5
WP_164536539.1\|1709929_1710772_-\|capsid	GPO family capsid scaffolding protein	F1BUR1	Erwinia_phage	1.5e-60	47.9
WP_164536540.1\|1710919_1712683_+\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	4.3e-238	69.1
WP_164536541.1\|1712682_1713747_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	1.2e-115	57.7
WP_164536542.1\|1714550_1714916_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_164536543.1\|1715457_1715646_-	DUF3283 family protein	NA	NA	NA	NA
WP_164536544.1\|1715726_1716017_-	hypothetical protein	NA	NA	NA	NA
WP_164536545.1\|1716026_1716368_-	hypothetical protein	NA	NA	NA	NA
WP_164536546.1\|1716367_1716568_-	hypothetical protein	NA	NA	NA	NA
WP_164536547.1\|1716782_1717394_-	3'-5' exoribonuclease	K7PM77	Enterobacteria_phage	2.3e-45	48.9
WP_164536548.1\|1717405_1719796_-	replication endonuclease	A5X9G4	Aeromonas_virus	1.5e-105	37.0
WP_164536549.1\|1719792_1720800_-	phosphoadenosine phosphosulfate reductase family protein	B7SYG0	Stenotrophomonas_phage	7.2e-73	44.9
WP_164537930.1\|1720796_1721132_-	hypothetical protein	NA	NA	NA	NA
WP_164536550.1\|1721245_1721497_-	hypothetical protein	NA	NA	NA	NA
WP_164536551.1\|1721493_1721715_-	hypothetical protein	NA	NA	NA	NA
WP_164536552.1\|1721711_1722038_-	hypothetical protein	NA	NA	NA	NA
WP_073536735.1\|1722034_1722571_-	DNA methyltransferase	U3PDF3	Vibrio_phage	2.7e-66	63.2
WP_164536553.1\|1722567_1722744_-	hypothetical protein	NA	NA	NA	NA
WP_164536554.1\|1722740_1723043_-	hypothetical protein	NA	NA	NA	NA
WP_164536555.1\|1723184_1723346_-	DUF3927 family protein	H6WZJ7	Escherichia_phage	3.0e-05	53.1
WP_164536556.1\|1723338_1723773_-	tellurite resistance TerB family protein	Q1MVI3	Enterobacteria_phage	1.4e-41	62.2
WP_164536557.1\|1723809_1724256_-	hypothetical protein	NA	NA	NA	NA
WP_164536558.1\|1724271_1724499_-	hypothetical protein	NA	NA	NA	NA
WP_164536559.1\|1724495_1724720_-	ogr/Delta-like zinc finger family protein	A0A077K829	Ralstonia_phage	1.5e-10	46.9
WP_164536560.1\|1724729_1725248_-	hypothetical protein	A5X9F7	Aeromonas_virus	5.4e-24	39.2
WP_164536561.1\|1725281_1725695_-	hypothetical protein	NA	NA	NA	NA
WP_164537931.1\|1726277_1726607_+	S24 family peptidase	A5X9F5	Aeromonas_virus	4.8e-34	63.3
WP_164536562.1\|1726622_1727084_+	hypothetical protein	NA	NA	NA	NA
WP_164536563.1\|1727108_1728548_+	hypothetical protein	Q4ZA70	Staphylococcus_virus	1.2e-23	38.0
WP_164536564.1\|1728556_1729615_+\|integrase	tyrosine-type recombinase/integrase	A5X9F3	Aeromonas_virus	9.8e-113	58.6
1729728:1729783	attL	NA	NA	NA	NA
WP_164536565.1\|1729871_1730456_+	hypothetical protein	NA	NA	NA	NA
WP_164535986.1\|1730609_1732151_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	3.4e-130	47.6
WP_059296348.1\|1732165_1732921_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	3.4e-59	51.9
WP_164536566.1\|1732954_1733512_+\|integrase	site-specific integrase	Q9T1P3	Pseudomonas_phage	7.1e-14	30.0
WP_147277440.1\|1733738_1733924_+	hypothetical protein	NA	NA	NA	NA
WP_164536567.1\|1734034_1735432_+	hypothetical protein	Q7M2A8	Enterobacteria_phage	1.5e-89	42.0
1742785:1742840	attR	NA	NA	NA	NA

DBSCAN-SWA_4

2578150 : 2603874

Enterobacteria_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_164535787.1\|2578150_2579479_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_005336959.1\|2579803_2581303_+	alanine:cation symporter family protein	NA	NA	NA	NA
WP_101530785.1\|2581373_2582180_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA
WP_101530786.1\|2582348_2584136_+	cyclic nucleotide-binding/CBS domain-containing protein	NA	NA	NA	NA
WP_101530787.1\|2584138_2584765_+	3'-5' exonuclease	NA	NA	NA	NA
WP_005336970.1\|2584870_2585182_+	DUF485 domain-containing protein	NA	NA	NA	NA
WP_026035062.1\|2585193_2586846_+	cation acetate symporter	NA	NA	NA	NA
WP_121463518.1\|2586950_2588169_+\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	3.4e-16	33.5
WP_043155065.1\|2588840_2590262_-\|transposase	IS66-like element ISKpn15 family transposase	NA	NA	NA	NA
WP_121463519.1\|2592575_2593514_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_039026395.1\|2594043_2594424_-	diacylglycerol kinase	NA	NA	NA	NA
WP_121463520.1\|2594541_2596167_-	MCR-3-related phosphoethanolamine--lipid A transferase	NA	NA	NA	NA
WP_101531744.1\|2599504_2599705_+	hypothetical protein	NA	NA	NA	NA
WP_121463485.1\|2601172_2602734_-\|transposase	IS3-like element ISAs20 family transposase	NA	NA	NA	NA
WP_042864152.1\|2602833_2603874_-\|transposase	IS481-like element ISAs19 family transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	1.7e-72	41.8

DBSCAN-SWA_5

2772160 : 2808978

Bacillus_phage(21.43%)

bacteriocin,protease,transposase,integrase,tRNA

attL 2800303:2800337|attR 2810680:2810714

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_164537020.1\|2772160_2772919_-\|tRNA	tRNA-(ms[2]io[6]A)-hydroxylase	NA	NA	NA	NA
WP_158113146.1\|2773124_2774645_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	4.9e-89	42.6
WP_005337086.1\|2774666_2775155_-\|bacteriocin	bacteriocin production protein	NA	NA	NA	NA
WP_164537021.1\|2775163_2775340_+	hypothetical protein	NA	NA	NA	NA
WP_005337087.1\|2775342_2776638_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	3.6e-93	50.4
WP_164537952.1\|2776944_2778288_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	9.0e-79	41.2
WP_041236057.1\|2778358_2778967_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_164537022.1\|2779047_2781588_-	cell division protein FtsK	A0A218M9A2	Mycobacterium_phage	9.6e-90	49.3
WP_005300047.1\|2781766_2782258_-	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_076494667.1\|2782408_2783524_+	alanine dehydrogenase	NA	NA	NA	NA
WP_042062225.1\|2783709_2784660_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	1.4e-62	43.5
WP_164537023.1\|2784722_2785970_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	2.5e-14	32.2
WP_164537024.1\|2786078_2786549_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA
WP_164537025.1\|2786568_2787276_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_088869181.1\|2787272_2787989_+	arginyltransferase	NA	NA	NA	NA
WP_005300033.1\|2788057_2788276_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_164537026.1\|2788344_2790600_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	2.0e-168	43.0
WP_005337111.1\|2790659_2790977_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.4e-14	49.4
WP_005300025.1\|2791206_2791425_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.2e-17	63.2
WP_064338144.1\|2791542_2792397_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	6.0e-28	32.9
WP_120414445.1\|2793246_2793957_+	two-component system response regulator RstA	W8CYM9	Bacillus_phage	1.3e-28	31.9
WP_164537027.1\|2793978_2795304_+	two-component system sensor histidine kinase RstB	W8CYF6	Bacillus_phage	4.3e-17	24.6
WP_005359970.1\|2795358_2795541_+	hypothetical protein	NA	NA	NA	NA
WP_164537028.1\|2795691_2798241_+	bifunctional lysylphosphatidylglycerol flippase/synthetase MprF	NA	NA	NA	NA
WP_164537029.1\|2798252_2798975_+	virulence factor	NA	NA	NA	NA
WP_164537030.1\|2799303_2800266_+\|transposase	IS1595 family transposase	NA	NA	NA	NA
2800303:2800337	attL	NA	NA	NA	NA
WP_164537031.1\|2800578_2802003_-	hypothetical protein	NA	NA	NA	NA
WP_164537032.1\|2802112_2803579_-	caspase family protein	NA	NA	NA	NA
WP_164537033.1\|2804747_2806103_-	ATPase	A0A2I7QJQ6	Vibrio_phage	1.1e-18	32.2
WP_164537034.1\|2806615_2807581_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_164537035.1\|2807778_2808978_-\|integrase	site-specific integrase	A0A2H4JGM5	uncultured_Caudovirales_phage	7.3e-32	34.4
2810680:2810714	attR	NA	NA	NA	NA

DBSCAN-SWA_6

3299115 : 3356255

Aeromonas_phage(80.36%)

capsid,terminase,integrase,portal

attL 3320358:3320372|attR 3360378:3360392

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_164537250.1\|3299115_3306096_-	hypothetical protein	A0A1I9KFG8	Aeromonas_phage	3.4e-44	39.6
WP_139399668.1\|3306234_3306609_-	HEPN domain-containing protein	NA	NA	NA	NA
WP_164537251.1\|3306598_3307423_-	hypothetical protein	NA	NA	NA	NA
WP_164537252.1\|3307664_3309113_-	hypothetical protein	A0A1I9KFD9	Aeromonas_phage	4.4e-180	67.6
WP_041980042.1\|3309124_3309364_-	hypothetical protein	A0A1I9KFI4	Aeromonas_phage	1.2e-15	61.2
WP_164537253.1\|3309363_3309738_-	hypothetical protein	A0A1I9KFD7	Aeromonas_phage	6.4e-59	97.6
WP_164537254.1\|3309748_3310387_-	hypothetical protein	A0A1I9KFE8	Aeromonas_phage	9.4e-103	96.7
WP_164537255.1\|3310395_3310764_-	hypothetical protein	A0A1I9KFI0	Aeromonas_phage	4.1e-50	79.6
WP_164537256.1\|3310779_3312066_-	hypothetical protein	A0A1I9KGC4	Aeromonas_phage	2.9e-34	49.4
WP_164537257.1\|3312116_3313727_-	hypothetical protein	A0A1I9KFD2	Aeromonas_phage	4.1e-211	64.8
WP_164537258.1\|3314009_3315677_-	hypothetical protein	A0A2I6PG27	Plesiomonas_phage	2.1e-37	57.7
WP_139401804.1\|3315679_3316339_-	hypothetical protein	A0A1I9KFD0	Aeromonas_phage	2.0e-39	40.7
WP_164537259.1\|3316350_3316980_-	hypothetical protein	NA	NA	NA	NA
WP_164537260.1\|3316979_3317423_-	hypothetical protein	A0A1I9KFH0	Aeromonas_phage	2.6e-51	77.3
WP_164537261.1\|3317489_3317879_-	hypothetical protein	A0A1I9KGB3	Aeromonas_phage	4.9e-54	82.2
WP_164537262.1\|3317947_3319165_-\|capsid	N4-gp56 family major capsid protein	A0A1I9KFC6	Aeromonas_phage	4.4e-218	92.3
WP_164537263.1\|3319237_3320167_-	hypothetical protein	A0A1I9KFD1	Aeromonas_phage	4.4e-125	77.7
WP_164537264.1\|3320304_3320673_-	hypothetical protein	A0A1I9KG26	Aeromonas_phage	9.1e-50	91.7
3320358:3320372	attL	NA	NA	NA	NA
WP_164537265.1\|3320792_3322919_-\|portal	portal protein	A0A1I9KFF7	Aeromonas_phage	0.0e+00	92.6
WP_164537266.1\|3322918_3324616_-\|terminase	terminase	A0A1I9KFB6	Aeromonas_phage	1.2e-306	90.6
WP_164537267.1\|3324706_3324907_-	hypothetical protein	NA	NA	NA	NA
WP_164537268.1\|3324949_3325840_-\|terminase	terminase	A0A1I9KFG9	Aeromonas_phage	1.3e-89	68.9
WP_041980004.1\|3325840_3326026_-	hypothetical protein	A0A1I9KFC1	Aeromonas_phage	8.1e-23	83.6
WP_164537269.1\|3326073_3326304_-	hypothetical protein	A0A1I9KFC5	Aeromonas_phage	8.5e-30	85.5
WP_164537270.1\|3326305_3326530_-	hypothetical protein	A0A1I9KFG6	Aeromonas_phage	4.5e-28	90.5
WP_164537271.1\|3326585_3327065_-	TIGR02594 family protein	A0A1I9KGA3	Aeromonas_phage	1.3e-83	94.2
WP_164537272.1\|3327064_3327382_-	hypothetical protein	A0A1I9KFB8	Aeromonas_phage	2.2e-52	98.1
WP_164537273.1\|3327517_3328216_-	hypothetical protein	A0A1I9KFB9	Aeromonas_phage	9.0e-99	81.0
WP_164537274.1\|3328212_3328638_-	hypothetical protein	A0A1I9KG18	Aeromonas_phage	4.2e-67	86.5
WP_164537275.1\|3328634_3328874_-	hypothetical protein	NA	NA	NA	NA
WP_164537276.1\|3328870_3329200_-	DUF1364 domain-containing protein	A0A2K8HR56	Pseudomonas_phage	7.7e-16	44.1
WP_164537277.1\|3329196_3329790_-	DUF1367 family protein	A0A0M4QX23	Salmonella_phage	2.0e-46	45.2
WP_164537278.1\|3329792_3330137_-	hypothetical protein	A0A1I9KFB7	Aeromonas_phage	2.8e-53	86.8
WP_164537279.1\|3330139_3330319_-	hypothetical protein	NA	NA	NA	NA
WP_164537280.1\|3330315_3330612_-	hypothetical protein	A0A1I9KG94	Aeromonas_phage	1.1e-37	81.1
WP_164537281.1\|3330687_3330990_-	hypothetical protein	A0A1I9KFB1	Aeromonas_phage	7.2e-37	78.8
WP_164537282.1\|3330976_3331648_-	hypothetical protein	A0A1I9KFB0	Aeromonas_phage	2.1e-100	82.5
WP_164537283.1\|3331647_3332790_-	hypothetical protein	A0A1I9KG10	Aeromonas_phage	1.6e-76	85.4
WP_164537284.1\|3332800_3334183_-	phosphoadenosine phosphosulfate reductase family protein	Q8W6P3	Burkholderia_virus	3.8e-40	30.7
WP_164537285.1\|3334179_3335094_-	DNA cytosine methyltransferase	NA	NA	NA	NA
WP_164537286.1\|3335090_3335243_-	hypothetical protein	A0A1I9KFA1	Aeromonas_phage	7.6e-11	62.5
WP_042062778.1\|3335293_3335512_-	hypothetical protein	A0A1I9KFG0	Aeromonas_phage	3.3e-15	69.7
WP_164537287.1\|3335517_3335916_-	hypothetical protein	A0A1I9KF96	Aeromonas_phage	5.6e-45	77.7
WP_139401738.1\|3335957_3336176_-	hypothetical protein	NA	NA	NA	NA
WP_139401736.1\|3336241_3336922_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_139441045.1\|3337638_3337890_+	hypothetical protein	A0A1I9KF98	Aeromonas_phage	1.7e-07	45.8
WP_164537288.1\|3338205_3338562_+	hypothetical protein	NA	NA	NA	NA
WP_164537289.1\|3338890_3339577_+	KilA-N domain-containing protein	B8K1H1	Salmonella_phage	1.9e-16	43.8
WP_164537290.1\|3339652_3340018_+	hypothetical protein	A0A1I9KFC9	Aeromonas_phage	2.4e-34	63.6
WP_164537291.1\|3340014_3340494_+	hypothetical protein	NA	NA	NA	NA
WP_164537292.1\|3340490_3341333_+	exodeoxyribonuclease VIII	A0A1I9KFF5	Aeromonas_phage	1.4e-125	73.6
WP_164537972.1\|3341389_3342301_+	recombinase RecT	A0A193GYL3	Enterobacter_phage	4.4e-77	56.5
WP_164535745.1\|3343532_3344756_+	hypothetical protein	A0A1I9KG78	Aeromonas_phage	1.2e-74	49.6
WP_164537293.1\|3344752_3345208_+	hypothetical protein	A0A1I9KF89	Aeromonas_phage	2.4e-60	74.8
WP_164537294.1\|3345200_3345779_+	phage N-6-adenine-methyltransferase	A0A1I9KF87	Aeromonas_phage	7.0e-105	94.3
WP_164537295.1\|3345837_3346014_+	hypothetical protein	A0A1I9KFZ1	Aeromonas_phage	1.7e-17	74.6
WP_164537296.1\|3346036_3346975_+	recombination-associated protein RdgC	A0A1I9KFB4	Aeromonas_phage	1.5e-160	91.7
WP_164537297.1\|3346971_3347571_+	hypothetical protein	A0A1I9KF82	Aeromonas_phage	1.2e-54	58.6
WP_164537973.1\|3347564_3348260_+	DUF3850 domain-containing protein	A0A059T699	Listeria_phage	5.6e-16	60.6
WP_164537298.1\|3348223_3348442_+	hypothetical protein	A0A1I9KF77	Aeromonas_phage	1.2e-28	81.7
WP_164537299.1\|3348435_3348648_+	hypothetical protein	NA	NA	NA	NA
WP_164537300.1\|3348650_3348956_+	DUF4406 domain-containing protein	A0A1I9KFD3	Aeromonas_phage	6.4e-41	90.2
WP_164537301.1\|3349044_3349962_+	hypothetical protein	H9C0Q8	Aeromonas_phage	4.5e-21	31.4
WP_164537302.1\|3350018_3350459_+	hypothetical protein	A0A1I9KG69	Aeromonas_phage	1.2e-51	85.4
WP_017411491.1\|3350451_3350649_+	hypothetical protein	I6PBM8	Cronobacter_phage	3.3e-14	57.4
WP_164537974.1\|3350645_3351791_+	DUF3596 domain-containing protein	I6PDJ1	Cronobacter_phage	7.1e-125	60.5
WP_164537303.1\|3352397_3353750_+\|integrase	integrase arm-type DNA-binding domain-containing protein	E5AGD0	Erwinia_phage	5.6e-12	25.1
WP_164537304.1\|3354108_3355701_-	hypothetical protein	NA	NA	NA	NA
WP_164537305.1\|3356039_3356255_+	AlpA family transcriptional regulator	A0A1V0E8E5	Vibrio_phage	1.5e-07	46.0
3360378:3360392	attR	NA	NA	NA	NA

DBSCAN-SWA_7

4448038 : 4454348

Bacillus_thuringiensis_phage(100.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_150997203.1\|4448038_4448986_+	DUF218 domain-containing protein	Q56AS0	Bacillus_thuringiensis_phage	9.3e-22	85.5
WP_042081873.1\|4449070_4449685_-	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	3.2e-116	99.5
WP_005354955.1\|4449702_4450182_-	hypothetical protein	Q56AR5	Bacillus_thuringiensis_phage	3.0e-37	98.7
WP_005335957.1\|4450357_4451374_-	chemotaxis protein CheV	Q56AR1	Bacillus_thuringiensis_phage	1.3e-191	99.7
WP_164537782.1\|4451575_4452295_+	SDR family NAD(P)-dependent oxidoreductase	Q56AQ6	Bacillus_thuringiensis_phage	1.3e-129	96.2
WP_164537783.1\|4452281_4454348_-\|tRNA	tRNA(Met) cytidine acetyltransferase	Q56AQ2	Bacillus_thuringiensis_phage	2.7e-98	94.3

DBSCAN-SWA_8

4548661 : 4559271

Bacillus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_019446511.1\|4548661_4549330_+	response regulator transcription factor	W8CYM9	Bacillus_phage	6.7e-27	33.3
WP_164537823.1\|4549326_4550571_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_005340088.1\|4550666_4551563_-	30S ribosomal protein S6--L-glutamate ligase	A0A1D7SR78	Cyanophage	7.9e-39	34.3
WP_164537824.1\|4551794_4555490_-	methionine synthase	A0A140XBC7	Dickeya_phage	7.3e-22	80.3
WP_164537825.1\|4555706_4556984_+	sodium:proton antiporter	A0A2H4J178	uncultured_Caudovirales_phage	7.1e-41	39.4
WP_005340085.1\|4557490_4557667_+	hypothetical protein	NA	NA	NA	NA
WP_164537826.1\|4557820_4558318_-	GNAT family N-acetyltransferase	G9BWD5	Planktothrix_phage	1.7e-06	28.3
WP_129504839.1\|4558449_4559271_-	HDOD domain-containing protein	A0A1C3NFB0	Phage_NCTB	2.7e-09	24.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP034967

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection