CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP042859	Providencia sp. 1701011 chromosome, complete genome	3 crisprs	WYL,DEDDh,cas3,csa3,PD-DExK,DinG	0	0	14	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP042859_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042859_1

736057-736160

Orphan

Consensus_repeat	Method
GCTACTCGGGTCACATACTTATGTATGCTCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042859_1

>merge|NZ_CP042859|1|736057-736160|CRISPRCasFinder
GCTACTCGGGTCACATACTTATGTATGCTCCTATTCGTCATACTTCGTACTGTGACGTTGTTGACTGCTCTCGGCTACTCGGGTCACATACTTATGTATGCTCC

>NZ_CP042859|1|1|736057-736160|CRISPRCasFinder
GCTACTCGGGTCACATACTTATGTATGCTCC	TATTCGTCATACTTCGTACTGTGACGTTGTTGACTGCTCTCG
GCTACTCGGGTCACATACTTATGTATGCTCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042859.1\|WP_164528408.1\|723009_723339_+\|phage-tail-protein	unknown	unknown	gnl\|CDD\|227062
NZ_CP042859.1\|WP_109911848.1\|743831_744761_+\|homoserine-kinase	unknown	unknown	gnl\|CDD\|234920
NZ_CP042859.1\|WP_164528415.1\|732430_732709_-\|DinI-family-protein	unknown	unknown	gnl\|CDD\|368780
NZ_CP042859.1\|WP_004914737.1\|738833_739310_+\|protein-CreA	unknown	unknown	gnl\|CDD\|236752
NZ_CP042859.1\|WP_004914738.1\|737733_738648_-\|MDR-efflux-pump-AcrAB-transcriptional-activator-RobA	unknown	unknown	gnl\|CDD\|185076
NZ_CP042859.1\|WP_164528413.1\|726033_729636_+\|DUF1983-domain-containing-protein	unknown	unknown	gnl\|CDD\|227076
NZ_CP042859.1\|WP_164528409.1\|723407_723965_+\|zinc-ribbon-domain-containing-protein	unknown	unknown	gnl\|CDD\|379090
NZ_CP042859.1\|WP_071524551.1\|741131_741284_+\|thr-operon-leader-peptide	unknown	unknown	unknown
NZ_CP042859.1\|WP_004914728.1\|746186_746834_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223003
NZ_CP042859.1\|WP_109911849.1\|744764_746060_+\|threonine-synthase	unknown	unknown	gnl\|CDD\|236418
NZ_CP042859.1\|WP_164528410.1\|724029_724728_+\|phage-minor-tail-protein-L	unknown	unknown	gnl\|CDD\|227018
NZ_CP042859.1\|WP_102138956.1\|737042_737690_+\|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase-GpmB	unknown	unknown	gnl\|CDD\|179583
NZ_CP042859.1\|WP_004905684.1\|739420_740137_-\|two-component-system-response-regulator-ArcA	unknown	unknown	gnl\|CDD\|183013
NZ_CP042859.1\|WP_164528414.1\|729632_730724_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042859.1\|WP_164528416.1\|733455_735369_+\|murein-transglycosylase	unknown	unknown	gnl\|CDD\|183236
NZ_CP042859.1\|WP_164528412.1\|725368_726031_+\|tail-assembly-protein	unknown	unknown	gnl\|CDD\|227067
NZ_CP042859.1\|WP_004914745.1\|735694_736012_+\|trp-operon-repressor	unknown	unknown	gnl\|CDD\|179289
NZ_CP042859.1\|WP_164528411.1\|724736_725465_+\|phage-tail-protein	unknown	unknown	gnl\|CDD\|163704
NZ_CP042859.1\|WP_004914743.1\|736453_736990_-\|non-canonical-purine-NTP-phosphatase	unknown	unknown	gnl\|CDD\|235336
NZ_CP042859.1\|WP_109911987.1\|741368_743828_+\|bifunctional-aspartate-kinase/homoserine-dehydrogenase-I	unknown	unknown	gnl\|CDD\|181856

Protein	Function_ID	Function_description	E-value
NZ_CP042859.1\|WP_164528408.1\|723009_723339_+\|phage-tail-protein	gnl\|CDD\|227062	COG4718, COG4718, Phage-related protein [Function unknown].	8.48625e-37
NZ_CP042859.1\|WP_109911848.1\|743831_744761_+\|homoserine-kinase	gnl\|CDD\|234920	PRK01212, PRK01212, homoserine kinase; Provisional.	4.98228e-154
NZ_CP042859.1\|WP_164528415.1\|732430_732709_-\|DinI-family-protein	gnl\|CDD\|368780	pfam06183, DinI, DinI-like family. This family of short proteins includes DNA-damage-inducible protein I (DinI) and related proteins. The SOS response, a set of cellular phenomena exhibited by eubacteria, is initiated by various causes that include DNA damage-induced replication arrest, and is positively regulated by the co- protease activity of RecA. Escherichia coli DinI, a LexA-regulated SOS gene product, shuts off the initiation of the SOS response when overexpressed in vivo. Biochemical and genetic studies indicated that DinI physically interacts with RecA to inhibit its co-protease activity. The structure of DinI is known.	6.91894e-13
NZ_CP042859.1\|WP_004914737.1\|738833_739310_+\|protein-CreA	gnl\|CDD\|236752	PRK10756, PRK10756, protein CreA.	1.43467e-108
NZ_CP042859.1\|WP_004914738.1\|737733_738648_-\|MDR-efflux-pump-AcrAB-transcriptional-activator-RobA	gnl\|CDD\|185076	PRK15121, PRK15121, MDR efflux pump AcrAB transcriptional activator RobA.	6.7413e-171
NZ_CP042859.1\|WP_164528413.1\|726033_729636_+\|DUF1983-domain-containing-protein	gnl\|CDD\|227076	COG4733, COG4733, Phage-related protein, tail component [Function unknown].	0
NZ_CP042859.1\|WP_164528409.1\|723407_723965_+\|zinc-ribbon-domain-containing-protein	gnl\|CDD\|379090	pfam13248, zf-ribbon_3, zinc-ribbon domain. This family consists of a single zinc ribbon domain, ie half of a pair as in family DZR. pfam12773.	0.000236688
NZ_CP042859.1\|WP_004914728.1\|746186_746834_-\|hypothetical-protein	gnl\|CDD\|223003	PHA03169, PHA03169, hypothetical protein; Provisional.	3.62804e-08
NZ_CP042859.1\|WP_109911849.1\|744764_746060_+\|threonine-synthase	gnl\|CDD\|236418	PRK09225, PRK09225, threonine synthase; Validated.	0
NZ_CP042859.1\|WP_164528410.1\|724029_724728_+\|phage-minor-tail-protein-L	gnl\|CDD\|227018	COG4672, gp18, Phage-related protein [Function unknown].	8.48287e-108
NZ_CP042859.1\|WP_102138956.1\|737042_737690_+\|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase-GpmB	gnl\|CDD\|179583	PRK03482, PRK03482, phosphoglycerate mutase GpmB.	9.43961e-140
NZ_CP042859.1\|WP_004905684.1\|739420_740137_-\|two-component-system-response-regulator-ArcA	gnl\|CDD\|183013	PRK11173, PRK11173, two-component response regulator; Provisional.	0
NZ_CP042859.1\|WP_164528416.1\|733455_735369_+\|murein-transglycosylase	gnl\|CDD\|183236	PRK11619, PRK11619, lytic murein transglycosylase; Provisional.	0
NZ_CP042859.1\|WP_164528412.1\|725368_726031_+\|tail-assembly-protein	gnl\|CDD\|227067	COG4723, COG4723, Phage-related protein, tail component [Function unknown].	1.14884e-70
NZ_CP042859.1\|WP_004914745.1\|735694_736012_+\|trp-operon-repressor	gnl\|CDD\|179289	PRK01381, PRK01381, trp operon repressor.	1.86461e-48
NZ_CP042859.1\|WP_164528411.1\|724736_725465_+\|phage-tail-protein	gnl\|CDD\|163704	cd08073, MPN_NLPC_P60, Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains. This family contains bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains at the N-terminus of NlpC/P60 phage tail protein domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.	1.92511e-43
NZ_CP042859.1\|WP_004914743.1\|736453_736990_-\|non-canonical-purine-NTP-phosphatase	gnl\|CDD\|235336	PRK05074, PRK05074, non-canonical purine NTP phosphatase.	2.61365e-108
NZ_CP042859.1\|WP_109911987.1\|741368_743828_+\|bifunctional-aspartate-kinase/homoserine-dehydrogenase-I	gnl\|CDD\|181856	PRK09436, thrA, bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional.	0

>NZ_CP042859.1|WP_004914745.1|735694_736012_+|trp-operon-repressor
MTANQHQDPALTADENADWLRFVNLLQLAFEQDIHLPVLQLLLTPDERTALATRVKIVQELMRGEMSQRELKNELGVGIATITRGSNSLKSAPIPVKEWLEQQLL
>NZ_CP042859.1|WP_164528416.1|733455_735369_+|murein-transglycosylase
MKGWLSAVPVTMLLVSSTVWADSLQAQRERYQAIKVAWDANKMDEVERLLPTLHDYPLYPYLAYRELTQDLDIVSPRQVQEFINTYPTLPVAKNLKTRFVNELARRQEWKSLLEFSPEAPKPAEAQCNFYFANWAVGNKQVAWQGAEKAWLNGRSMPSACDKLFNEWEKAGYLTPEMTLERINLAIKEGNTSIASYLAKRLPPSYKTIGDALVKLQNDPASVVTFAKTMTPTDFTRQATIAAFSRYARQSPDAARTVLNSISSAQKMNMAEKQLLKDSIAWQYMGDVTPEQAQWRDETIQESNSSSLRERRVRLALGAGDKKGVASWLNRLPAEVKNKEEWQYWQAITLIDAGKKAEGETLLRQLTEKRGFYPMVAAQVLEVDYPVYVKTAVKPDSSVSQLPEVQRVRELMYWELDNLARSEWVSLVASLPANQQEQLARYAFDNKWADLSVQATITAKLWDHLEERFPLAWDKEFNLYTKSKDIQKSYAMAIARQESAWNPQARSPVGATGLMQLMPATAKHTAQKQGINYVNASQLTNPTTNIELGTAYLEDVYQQFGNNRILASAAYNAGPSRVTRWLGNSGGRIDAVAFVESIPFSETRGYVKNVLSYDLFYRHFMGQKNSKVLLSNEWNMKY
>NZ_CP042859.1|WP_164528415.1|732430_732709_-|DinI-family-protein
MVTIKIRFNRNKKGQLPTGTFEALRNEISKRLSAKYPDLNIDINWGTQDNVSIDGLGKNDKKTYIEETLEEIFIDGDWLPETQEAEVEYFDK
>NZ_CP042859.1|WP_164528414.1|729632_730724_+|hypothetical-protein
MIDSLYGLKIRNLDGSEFVFNERTAPATNLWTRYVRANDGLSPDGGWLTSKWTCPNEIPEGYGFQVVSLTAAEVTFTQSGDRRYVSGTQDKIAYSSDGRKVTVMGFSDTHNFNYTKIIAFPTIASQKAASGFGLKVMGSSIFLENTPPLGYAYATHKAKVYITDAFNIESTFPGLTIENAVFFFYTDDNKSFIRLEPSNVQSWEKLKWWRYVSRNRNSTNITAYSPAWYWVVAFTNVQPAQLDTPGFGLKIRNLEGKVTFNSQMGVMTRPITVPGNQIPLGSGINVDPIRRPMYTPTKVGEIFSSDGGLGWWRDLNIGNLGESQISLFQTSTSQQRGYHGNQTIARTATPAIFLDAADYFPFP
>NZ_CP042859.1|WP_164528413.1|726033_729636_+|DUF1983-domain-containing-protein
MGKGGGKQRTPYEAPNDLTSRQKLSIVDLVSEGPIEGPVGDLKGVYLNNTPVIDSSGNSNVNGMTAQWVSGTLEQPALEGFSSSSSETPVGIEIKKSTPVTRTITSRNIDRLRLTFGTQTLVEVKDNGDRVPTAVELQIQVQRNGAWVTEKNLTIRGKRSNSPYLTAVIIDNLPSPPFSIRMVRITPDSNSDKLQNNTIWSSYTEITDINQTYPGSAVAGLTFESEQFGNQYPSRSYLIRGRIVQVPDNYNPETREYSGIWSGTFKPAYTNNPAWVLYDLLTNPRAGLGKRLKLSEIDKFALYVIGQYCDQRVPDGFGGTEPRVTCNAYITDIRKAYDFFQDLCSQMRVMFAWNGQMLTFIQDRPSDVVWPYTNANVVAGRFNYSFSPAKARHNIIEVRFIDPENGWKTSIEQVTDDALVAQFGPNVLRLDAFGCTSRGQARRYGLWVLMTEKLETQTVEFDVGAEGLRHTPGDIIEIMDNDWVGGEDPISGRLIGINATQKVLTLDREITPPKSGSIFITLMNGTGKYERVKITGYLSNNQIKVEAVPKGLKAKTIWGINPPDLARRLFRAITISDKGDGTYGVIAVQHVPEKEAIVDQGVKFEPLPDTPLGGYIPPVENLSVEVSADSDNWQVEANWTTATAVRGVDFILKLTQAGRIVGTAKTQENRYRIGNLPQGNYLLSVAPQNKDGQKGEQASVSFDINPPPPPSYIDVEPGFFSLGIIPHVGGQNALRLQYEFWFSEKQIVNINEVELLAEYLGNGTMWVIQGRKLKAGQTYYVYVRTVNPVGKSQFVEANGKPEDRADEILEVIGDKFLSTEAGQQMQEQIDFNQGNVQLQLEQAAEATLNNTMMLNQVSWRLFEEEGTRKSEIFRLEQVRVSDQEALARWQQQVKTDYEQTSSAVLKVQESLSTLEESTAKDISQVKAEIKQVDDKLGPMDARITDQSEAIAKIDETQTKHIETAESRFNDNEALINQLARTIANAESSLAEMGMQLTAEYGNQSVEQLRIKASITRLDTVTANKFQSFAQSIERLNSQYGETQAAIEKMAKTEVDYQGNASSVISFKTAVMYNGQYYDAKMLIGASVKNGQVVTQIGFSADTFGIFNPSSGKLDPAFVVINGQVVISEALINKAMIGSIVVQTDMRSPNYVPGKSGMRIDMQNSVFETNSNKGDYSVIRNSKGDYFKYKNIYIIELGWFL
>NZ_CP042859.1|WP_164528412.1|725368_726031_+|tail-assembly-protein
MAKNDSLDLALPQLATIRFYGDLQRFGRRFDLNIKTAAEGLHALFLQIPNLKQQFREGWYQIRISGSDVKPDELHQRIYEPLIPNAVIHIVPRIEGAKSGGVFQFVAGAAILGLGWWGPAWISATAATMMMSAGAAMMLGGVAQMLTPLPKRASLSRSEEEKGNTYFSNLDNSVAQGMAVPIAYGEIMCGSRVISQSVEIMDDSESKDIDVGKHGGSGET
>NZ_CP042859.1|WP_164528411.1|724736_725465_+|phage-tail-protein
MLEQTILKHAKSMVPHESCGLVIIQEGTEVYIPCENQHADPDNYFSIAVENYIQAERLGDVVAIVHSHPNGKPYLSSADRAHQLKTHLPWWLVCNEKIIKFECVPKLLGREFIHGSTDCYGLFRDAYHLSGHSLPDFDREDNWWRQGKELYLDNLTENGFKQVKRDTQPGDIILCCYASSRANHAAIYLGDQTILHHVPNQLSKREVYNERWQKMTHSIWRYRSWQPSDFMGICNDLAVDSI
>NZ_CP042859.1|WP_164528410.1|724029_724728_+|phage-minor-tail-protein-L
MQNIPPELLIAVTEIEGDSEIILYEIDLTNIGGVRYRFHDGANELLKPITWQGQQYEPYPIVGEGFGFNGKGPSNRPTISLSNLFGLVYGIASRLNSGIGGIVIRRKTDAKFLDAENFAGGNKNADPTQEQVSRWVIEQLTSINAETATFELAAPTETDGATLPARVILSDVCNFAYRGEECGYKGEPVADELGNPTQDTTKDKCGKRLSDCKLRNNTHRIGCFLSSSRLSQ
>NZ_CP042859.1|WP_164528409.1|723407_723965_+|zinc-ribbon-domain-containing-protein
MKGFGLFLLAIGIIGAIASFAMDVTVATGYGGRVNNIGLMTDKQNYILISCFIILCGLLVTIFGKKSSVTKKCPFCAEFINTDAIKCKHCGSDIKVAKASPSSVDYSFSLLNYNIDELIGIKNGREVINDYGVKKLAFEIKKHNPRVTPAMLKLKYNDDIHDVAEKLPTRIQSDFIKKILNLIGN
>NZ_CP042859.1|WP_164528408.1|723009_723339_+|phage-tail-protein
METFNWPVKPRMKTDSSPRTRSVRFGDGYEQRKVDGLNAHLEKFSVNLSLVPEKADQALEFLKRHGGVKSFLFQPIKSQPAVVVVCRKWSSDSGNVRKTISAEFEQVIF
>NZ_CP042859.1|WP_004914743.1|736453_736990_-|non-canonical-purine-NTP-phosphatase
MYQVIAATTNPAKIKAIHLAFDAVFGAGSYQIEDINVDSSVPQQPIGNNETRTGARQRVMASRQVRPEADFWVGIEAGIEDDMTFAWIVIEHKQIRGESRSASIMIPEKILAGIREGRELGDEMAFLTGIDNIKQQGGAIGFFTDGVLTRTSVYQQALILALVPIKHEIYKELNQVED
>NZ_CP042859.1|WP_102138956.1|737042_737690_+|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase-GpmB
MLQVYLVRHGETEWNLARRIQGQSDSPLTATGRLQARQVAERIKSEGITHIITSDMGRTLETAQIIASVCGCEITTEPRLRELNMGVLEQRAIESLTPEEEQWRKSLIDGTRGGRIPEGESMEELYTRMFAALNSCLDLPEGSRPLIVSHGIALSTLISRIMGVPAYSERRLRLRNCSLSRVDYQNSPWLANGWIVETAGEVTHLSQPALDEQQG
>NZ_CP042859.1|WP_004914738.1|737733_738648_-|MDR-efflux-pump-AcrAB-transcriptional-activator-RobA
MDQTNIIRDLLRWIDDNLDKPLSLDNVAAKAGYSKWHLQRMFKEVTDQAIGAYIRARRLSRAAVALRLTSRPILDIALQYRFDSQQTFTRAFKKQFNLTPAFYRRSEEWCAAGICPPIILDNHTNIEHEFLQMPAQELVGLEQSCSYALEEWSTACSQMRQTFWHYYLDNTTTIASEVFGLHHAIHNPEKEDEQTVFYTTAVRPEDASFNTDQYTSLTLPSGHYVKFSFNGTPTRDALQEFLYQIYGVYLPKLNLTRRPGYDIEHYRLKNIDLRHITPENDDPKTHIDTFDYYVPIKTGSTATP
>NZ_CP042859.1|WP_004914737.1|738833_739310_+|protein-CreA
MRRSRLKNIVLAALLSVLPGITFAEEIGSVDTVFKIFGPDHKIVVEAFDDPDVENVTCYLSRSKTGGIKGGLGLAEDTSDAAISCQQVGPIELNDRVKRKPTKGQVVFQKRTSLVFKKLQVVRFYDPKRNALIYLTYSDKMIDGSPKNALSAVPIMPW
>NZ_CP042859.1|WP_004905684.1|739420_740137_-|two-component-system-response-regulator-ArcA
MQTPHILIVEDEIVTRNTLKSIFEAEGYVVHEATDGEEMNNVLSEHDINLVIMDINLPGKNGLLLARELREQESIALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLAGGTEERRLVESYKFNGWELDINSRSLVSPAGEHYKLPRSEFRAMLHFCENPGKIQTRADLLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLDE
>NZ_CP042859.1|WP_071524551.1|741131_741284_+|thr-operon-leader-peptide
MQINLTKYTNCFNRIGRNLKESKRQTESMRNISLTIIITTTTVTTGNGAG
>NZ_CP042859.1|WP_109911987.1|741368_743828_+|bifunctional-aspartate-kinase/homoserine-dehydrogenase-I
MRVLKFGGTSVANDERVLNVADIAESKLADGQVALVLSAPAKITNHLVAMIEKTVAGQDVITHVNDAEMIFANLLKGLKEKQPGFEYDRLKKLTEQEFAQIKQVLHGITLLGQCPDSINAAIICRGEKLSIAIMESVLKARGHNVTVINPVESLLAKGHYLESTVDINESTKRIADLNIPKDHFVLMAGFTAGNDKGELVVLGRNGSDYSAAVLAACLRADCCEIWTDVDGVYTCDPRLVPDARLLKGMSYQEAMELSYFGAKVLHPRTIAPIAQFQIPCLIKNTTNLSAPGTLIGDGQTDDSTPVKGITNLNNMAMINVSGPGMKGMVGMAARIFSVMSRKGISVVLITQSSSEYSISFCVPQNELVRARAALEEEFYLELKDGVLDPLDVMEQLAIISVVGDGMRTLKGISARFFSALTRGNINIVAIAQGSSERSISAVIANESATTAVRLCHQMLFNAEQVIEAFIIGVGGVGNALIEQIHRQQQWLKQKHIDLRVCGIANSRAMLTDMQGIDLDNWKAELAEAKEPFSLSRLIRLEREYHFLNPVIIDCTSNQEIAEQYVNFLKDGFNVVTPNKKANTLSMDYYHQLRAASETSKRKFLYDTNVGAGLPVIENLQNLLNAGDELVHFSGILSGSLSFIFGKLDEGMSLSEATTLAKEKGFTEPDPRDDLSGMDVARKLLILAREAGYDLELQDIEIEPVLPTDFDSSGAVPEFMARLPQLDEQFAQRIKAAEAEQKVLRYVGLIEEGRCQVKIVAVDGNDPLFKVKNGENALAFYTRYYQPIPLVLRGYGAGNDVTAAGVFADMLRTLSWKLGV
>NZ_CP042859.1|WP_109911848.1|743831_744761_+|homoserine-kinase
MIKVYAPASIGNVSVGFDVLGAAVSPADGSLLGDCVTVEAADTFSLTNKGKFVAKLPKKNEHNIVYQCWQLFCERLGQPLNVAMTLEKNMPIGSGLGSSACSVVAALMALNEFAEKPFDDTQLLGMMGELEGRISGSVHYDNVAPCFLGGLQLIIEQNGIISQPVPAFENWYWVMAYPGIKVSTAEARAILPDSYPRHDIVNHGRYLSGFIHACHTNQPLLAATMIQDVVAEPYRTQLLPGFAAARQNAKEIGALACGISGSGPTLFAICDEKHIAENMASYLQQHYIQNDEGFVHICRLDLAGARTIG
>NZ_CP042859.1|WP_109911849.1|744764_746060_+|threonine-synthase
MKLYNLKDNNEQVSFAQAVKQGLGKQQGLFFPQDLPEFSAAEIDELLKLDFVTRSSRILSAFIGDEIPSEELAARVKAAFAFPAPVSKVEDDVATLELYHGPTLAFKDFGGRFMAQALGQVAGEQPVTILTATSGDTGAAVAHAFYRLNNVQVVILYPEGKISPLQEKLFCTLGENIHTVAIKDDFDACQALVKQSFDDEELKKALYLNSANSINISRLLAQICYYFEAVAQIPAEKRDQLVISVPSGNFGDLTAGLLAKAMGLPVKRFIAATNVNDTVPRYLVDGQWKPKQTVATLSNAMDVSQPNNWPRIEELFRRKGWSLDELGHGVVSDEVTKETVRELDKKGYLSEPHAAVAYRVLRDQLQEGEYGLFLGTAHPAKFKESVEEILNKAIPLPKELAERAELPLLSHFLPSDFTQLRTFLMKLAPKQ
>NZ_CP042859.1|WP_004914728.1|746186_746834_-|hypothetical-protein
MNHKVCISLSLLLISSYSISSYSHSLFNTTSNCSLKNELIINDVNNKICSILNGQYYYSKILSFASHGQNGNHGQNGSHGQGGLGGQAGQGGDGQNGGNGGTGSNNGNGSNGGNAEAGSNGNGGNGGHGSVTGGDGGHGGNGDGTGNGGNGGNGTMNGNGGNGGNGGSNGGNGGNGGNGSGGGNGGNGGNGSQGGKGGRGGSDGGRDGLDGISTL

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Crispr_ID: NZ_CP042859_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042859_2

1175164-1175327

Orphan

Consensus_repeat	Method
AATCCCTAGGAGCATACATAAGTATGTGACTAGGGTTGGCGAATGTAGCCAACAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042859_2

>merge|NZ_CP042859|2|1175164-1175327|CRISPRCasFinder
AATCCCTAGGAGCATACATAAGTATGTGACTAGGGTTGGCGAATGTAGCCAACAATGCTACGGCGTTAAGGGCGAAGAATTAGCGACGTAGCAAGACGGCAAAAGAAATAATCCCTAGGAGCATACACAAGTATGTGACTAGGGTTGGCGAATGTAGCCAACAA

>NZ_CP042859|2|2|1175164-1175327|CRISPRCasFinder
AATCCCTAGGAGCATACATAAGTATGTGACTAGGGTTGGCGAATGTAGCCAACAA	TGCTACGGCGTTAAGGGCGAAGAATTAGCGACGTAGCAAGACGGCAAAAGAAAT
AATCCCTAGGAGCATACACAAGTATGTGACTAGGGTTGGCGAATGTAGCCAACAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042859.1\|WP_109912036.1\|1174098_1175067_+\|GTPase	unknown	unknown	gnl\|CDD\|183183
NZ_CP042859.1\|WP_109912038.1\|1178554_1179451_+\|diaminopimelate-dehydrogenase	unknown	unknown	gnl\|CDD\|273877
NZ_CP042859.1\|WP_004913743.1\|1179622_1180345_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042859.1\|WP_164528499.1\|1185379_1186996_+\|multicopper-oxidase-CueO	unknown	unknown	gnl\|CDD\|236810
NZ_CP042859.1\|WP_109912035.1\|1168036_1168963_+\|EamA-family-transporter-RarD	unknown	unknown	gnl\|CDD\|225510
NZ_CP042859.1\|WP_004913725.1\|1184791_1185139_-\|YacC-family-pilotin-like-protein	unknown	unknown	gnl\|CDD\|370620
NZ_CP042859.1\|WP_109912040.1\|1181258_1182476_-\|Tm-1-like-ATP-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|179420
NZ_CP042859.1\|WP_110732211.1\|1183682_1184732_+\|AbrB-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|377472
NZ_CP042859.1\|WP_123382372.1\|1163133_1163763_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226932
NZ_CP042859.1\|WP_109912034.1\|1165261_1166716_-\|glycoside-hydrolase-family-32-protein	unknown	unknown	gnl\|CDD\|224536
NZ_CP042859.1\|WP_004913766.1\|1169088_1170267_+\|formate-dependent-phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl\|CDD\|236454
NZ_CP042859.1\|WP_004913749.1\|1176868_1178215_-\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240539
NZ_CP042859.1\|WP_164528496.1\|1166919_1167867_+\|aminoimidazole-riboside-kinase	unknown	unknown	gnl\|CDD\|236514
NZ_CP042859.1\|WP_164528498.1\|1171617_1173771_+\|carbon-starvation-protein-A	unknown	unknown	gnl\|CDD\|184976
NZ_CP042859.1\|WP_004913739.1\|1180418_1181246_-\|phosphoenolpyruvate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|378168
NZ_CP042859.1\|WP_164528497.1\|1170731_1171184_+\|WG-repeat-containing-protein	unknown	unknown	unknown
NZ_CP042859.1\|WP_004260586.1\|1173872_1174076_+\|YbdD/YjiX-family-protein	unknown	unknown	gnl\|CDD\|225434
NZ_CP042859.1\|WP_109912037.1\|1175337_1176660_-\|serine-dehydratase-subunit-alpha-family-protein	unknown	unknown	gnl\|CDD\|226206
NZ_CP042859.1\|WP_004913775.1\|1164235_1165231_+\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380511
NZ_CP042859.1\|WP_109912041.1\|1182852_1183485_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228

Protein	Function_ID	Function_description	E-value
NZ_CP042859.1\|WP_109912036.1\|1174098_1175067_+\|GTPase	gnl\|CDD\|183183	PRK11537, PRK11537, putative GTP-binding protein YjiA; Provisional.	0
NZ_CP042859.1\|WP_109912038.1\|1178554_1179451_+\|diaminopimelate-dehydrogenase	gnl\|CDD\|273877	TIGR01921, Meso-diaminopimelate_D-dehydrogenase, diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.	1.40388e-111
NZ_CP042859.1\|WP_164528499.1\|1185379_1186996_+\|multicopper-oxidase-CueO	gnl\|CDD\|236810	PRK10965, PRK10965, multicopper oxidase; Provisional.	0
NZ_CP042859.1\|WP_004913749.1\|1176868_1178215_-\|MATE-family-efflux-transporter	gnl\|CDD\|240539	cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.	2.04838e-175
NZ_CP042859.1\|WP_004913725.1\|1184791_1185139_-\|YacC-family-pilotin-like-protein	gnl\|CDD\|370620	pfam09691, T2SS_PulS_OutS, Type II secretion system pilotin lipoprotein (PulS_OutS). This family comprises lipoproteins from four gamma proteobacterial species: PulS protein of Klebsiella pneumoniae (P20440), the OutS protein of Erwinia chrysanthemi (Q01567) and Pectobacterium chrysanthemi, and the functionally uncharacterized E. coli protein EtpO. PulS and OutS have been shown to interact with and facilitate insertion of secretins into the outer membrane, suggesting a chaperone-like, or piloting function for members of this family. In the pilotin from this four-helix protein from enterohemorrhagic Escherichia coli, the straight helix alpha2, the curved helix alpha3 and the bent helix alpha4 surround the central N-terminal helix alpha1. These helices create a prominent groove, mainly formed by side chains of helices 1,2 and 3 suggesting this groove is important as a binding site.	2.54481e-08
NZ_CP042859.1\|WP_109912040.1\|1181258_1182476_-\|Tm-1-like-ATP-binding-domain-containing-protein	gnl\|CDD\|179420	PRK02399, PRK02399, hypothetical protein; Provisional.	0
NZ_CP042859.1\|WP_110732211.1\|1183682_1184732_+\|AbrB-family-transcriptional-regulator	gnl\|CDD\|377472	pfam05145, AbrB, Transition state regulatory protein AbrB. Bacillus subtilis respond to a multitude of environmental stimuli by using transcription factors called transition state regulators (TSRs). They play an essential role in cell survival by regulating spore formation, competence, and biofilm development. AbrB is one of the most known TSRs, acting as a pleotropic regulator for over 60 different genes where it directly binds to their promoter or regulatory regions. Many other genes are indirectly controlled by AbrB since it is a regulator of other regulatory proteins, including ScoC, Abh, SinR and SigH. Hence, AbrB is considered a global regulatory protein controlling processes such as Bacillus subtilis growth and cell division as well as production of extracellular degradative enzymes, nitrogen utilization and amino acid metabolism, motility, synthesis of antibiotics and their resistant determinants, development of competence, transport systems, oxidative stress response, phosphate metabolism, cell surface components and sporulation. AbrB is a tetramer consisting of identical 94 residue monomers. Its DNA-binding function resides solely in the N-terminal domain (AbrBN) of 53 residues. Although it does not recognize a well-defined DNA base-pairing sequence, instead, it appears to target a very weak pseudo consensus nucleotide sequence, TGGNA-5bp-TGGNA, which allows it to be rather promiscuous in binding. The N-terminal domains of very similar sequences are present in two more Bacillus subtilis proteins, Abh and SpoVT. Mutagenesis studies suggest that the role of the C-terminal domain is in forming multimers.	4.9608e-51
NZ_CP042859.1\|WP_123382372.1\|1163133_1163763_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|226932	COG4566, TtrR, Response regulator [Signal transduction mechanisms].	9.23149e-27
NZ_CP042859.1\|WP_109912037.1\|1175337_1176660_-\|serine-dehydratase-subunit-alpha-family-protein	gnl\|CDD\|226206	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism].	2.528e-178
NZ_CP042859.1\|WP_004913766.1\|1169088_1170267_+\|formate-dependent-phosphoribosylglycinamide-formyltransferase	gnl\|CDD\|236454	PRK09288, purT, formate-dependent phosphoribosylglycinamide formyltransferase.	0
NZ_CP042859.1\|WP_109912035.1\|1168036_1168963_+\|EamA-family-transporter-RarD	gnl\|CDD\|225510	COG2962, RarD, Predicted permeases [General function prediction only].	3.67974e-80
NZ_CP042859.1\|WP_164528496.1\|1166919_1167867_+\|aminoimidazole-riboside-kinase	gnl\|CDD\|236514	PRK09434, PRK09434, aminoimidazole riboside kinase; Provisional.	2.68224e-126
NZ_CP042859.1\|WP_164528498.1\|1171617_1173771_+\|carbon-starvation-protein-A	gnl\|CDD\|184976	PRK15015, PRK15015, carbon starvation protein CstA.	0
NZ_CP042859.1\|WP_004913739.1\|1180418_1181246_-\|phosphoenolpyruvate-hydrolase-family-protein	gnl\|CDD\|378168	pfam09370, PEP_hydrolase, Phosphoenolpyruvate hydrolase-like. This domain has a TIM barrel fold related to IGPS and to phosphoenolpyruvate mutase/aldolase/carboxylase.	0
NZ_CP042859.1\|WP_004260586.1\|1173872_1174076_+\|YbdD/YjiX-family-protein	gnl\|CDD\|225434	COG2879, COG2879, Uncharacterized small protein [Function unknown].	9.01001e-32
NZ_CP042859.1\|WP_109912034.1\|1165261_1166716_-\|glycoside-hydrolase-family-32-protein	gnl\|CDD\|224536	COG1621, SacC, Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism].	4.19449e-170
NZ_CP042859.1\|WP_004913775.1\|1164235_1165231_+\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380511	cd06288, PBP1_sucrose_transcription_regulator, ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	1.0099e-80
NZ_CP042859.1\|WP_109912041.1\|1182852_1183485_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.90234e-06

>NZ_CP042859.1|WP_109912036.1|1174098_1175067_+|GTPase
MKPISVTILTGFLGAGKTTLLSHILHAEHGHKIAVIENEFGEVPIDNAIIGDRATQITTLSNGCICCSRSNELENALLDLLDGLDNGKLDFERLVIECTGMADPGPITQTFFSHEVLCERYVLDGIITLVDAVHADKQLNDFAIAQAQIGYADRILLTKTDIEPNNEALIERLQRINARAPIYPVIQGDIDLSLLLDIEGFLLDSQLNVKQPTFRFAPKQQNEVGSIVLEFNYPVELMAVSQVMEDLLLGFADNLLRYKGILSIMGEPKRLLFQGVQRLYSADWDRDWEVDEQRRSVLVFIGIDLPEDIIREKFAALEVNSK
>NZ_CP042859.1|WP_004260586.1|1173872_1174076_+|YbdD/YjiX-family-protein
MFGNLGKTGKYLGQAARMLIGIPDYDTYVQHMSDNHPDKPVMTYKEFFRERQDARYGGSGKGGFRCC
>NZ_CP042859.1|WP_164528498.1|1171617_1173771_+|carbon-starvation-protein-A
MNKNGILKHIPWMILGIIGAVCLGVVALRRGEHISALWIVVASVAVYLIAYRYYSLYIAKKVMKLDETRATPAVINNDGLNYVPTNKNVLFGHHFAAIAGAGPLVGPVLAAQVGYLPGTLWLLAGVVLAGAVQDFMVLFISSRRNGASLGEIVKEELGPIPGTLALFGCFLIMIIILAVLALIVVKALAESPWGVFTVVSTVPIALFMGIYMRYIRPGRVGEVSVIGIVLLVASIWFGGVIAHDPYWGPALTFKDTTITYALVGYAFVSALLPVWLILAPRDYLATFLKIGVIVGLAIGIVILNPELKMPAVTQFVDGSGPVWKGTLFPFLFITIACGAVSGFHALISSGTTPKLLANEKDARYIGYGAMLMESFVAIMALVAASIIEPGLYFAMNTPPAALGITMPNLHELGGPDGAAIMAQLKDVSVHAAATVSSWGFVISPEQIMQTAKDIGEPSVLNRAGGAPTLAVGIAYVFHEIMPAANMGFWYHFGILFEALFILTALDAGTRSGRFMLQDLLGNFVPFLKKTDSLVAGIIGTAGCVGLWGYLLYQGVVDPLGGVKSLWPLFGISNQMLAAVALVLSTVVLIKMKRSKYIMVTVLPAVWLLICTTWALGLKLFSDNPQLEGFLYLAKSYKDKIVAGGAELTAQEITNMNHIIINNYTNAGLSILFLVVVYGIIFYGIRVGMKAHKNPERTDKETPYVPVPKEGVKVSSSH
>NZ_CP042859.1|WP_164528497.1|1170731_1171184_+|WG-repeat-containing-protein
MMVRYVAGLMSLGLMSFLSTAQNLEQQFSLWVANEKDKIECFEPQSSFKYCLGERPNSGLAVFDQKGQEVYQLYYFDNWPDEAQDGVYRIRKENKIGFADAISGEVVIDAIYDCAYPFKAGKAKVGIGCETQTDGEHSWWVGGNWTTITR
>NZ_CP042859.1|WP_004913766.1|1169088_1170267_+|formate-dependent-phosphoribosylglycinamide-formyltransferase
MNQLGTALCKSATKVMLLGAGELGKEVAIECQRLGIEVIAVDRYDNAPAMHIAHRSYTINMLDGEALKQIVSIEKPDIIVPEIEAIATQVLMELEQQGQKVVPSAKAIVLTMDREGIRRLAAEELKLPTSEYQFVDSKLDFIAAAEKIGFPCIVKPVMSSSGKGQSVIHSRDELNQAWDYSQEGGRAGQGRVIVEKMVNFDFEITLLTVSAVDGIHFCAPVGHRQEKGDYRESWQPQYMSEVALKKAQDVAEKIVTSLGGYGIFGVELFVCGDDIIFNEVSPRPHDTGMVTLISQNLSEFALHVRAFLGFPIGVIRQYGPSASAVILPSLQSQNVIFSNIGAALGSDTQLRLFGKPEIAGTRRLGVALAIADSIESALELAQKTANTVCVSG
>NZ_CP042859.1|WP_109912035.1|1168036_1168963_+|EamA-family-transporter-RarD
MLLRSGVALAIFSYILWGITPLFYRLLPGAEPLELLAERLIWSVPILFFVRLIIKNKSLWREVWSDKRSIILCLFSSSVMAISWTTFTYALTHGQVLAASLGYFINPLFSILLGVLFLRERLVFAEKMAVIFICAGVGYQIWQYGELPILALVMGSAFAVYGLIRKFIRFDVITSLFLEALWLLPIAIAISWWLASNGLSAVAQGDWQIKVLYMLAAPVTIIPLLFFTAAIKRTSLTVIGLAQYIEPTIQFLLAVFLFNELFDWVKGISFSLIWIGLIFCVLAILRKQYIKFSHKEPFITGRDKTPLD
>NZ_CP042859.1|WP_164528496.1|1166919_1167867_+|aminoimidazole-riboside-kinase
MKVWALGDAVIDLIPLQNMQYEACAGGAPVNVAAGVARLGQNSGFIGRVGEEAFGHFMQKTLFDIGVDTSAMEFDEKYKTSTVLVSLHENGEREFSFLVSPSADQFLTTNNLPQFGHDILHFCSLALVHHQCRASLSTAIEQLKLAGGLLSFDINIRPQMWSDPDEMHQVVDNFAKRADILKLSDDELLWLTQESRFENAIAKLQGYPAQLKIVTQGAKGCQVFTSLVQMAVSAYLVESIDTTGAGDAFMAGLLAAISQYGLVNEKEGLMKVISQATACGALATTKKGAIAAAPTQEELYAFMQQQPPLHQRDVF
>NZ_CP042859.1|WP_109912034.1|1165261_1166716_-|glycoside-hydrolase-family-32-protein
MKKQLELANETIKTARENMNLQFYPQYHLAPYVGWMNDPNGLIYHQGQYHAFYQHHPFSAIWGPMHWGHATSTDMVHWQHQPIALAPSEDYDRDGCFSGSAISYDNKLYLFYTGHIWLANPGDDSQIIQSQCVAISEDGIHFEKKGVVLPSPDGYMHFRDPKVWQQDGKWWMVVGARDSQDQGQILLFNSTDLLNWDQNYQILAKTDDNNVYMWECPDFFPLGEKFIALFSPQGKKAKNYQYRNLFQNGYLVGNWSPNLPYQISHSFTELDFGQDFYAPQTFLAKDGRRIAIAWMDMWENHMPTQKHGWSGCFTLPRELTLNEQGKIISKPIEELKSLRQSASHFPATMLAKNSTIVLNENATSCEIELIWDLQQSPAEKFGFWIGYGVQFYVDNQSQQLTLMRHYPEYTISDNRCAPIPQGHQLKINAFIDHSSLEVFINDGELNFSCRIYPHQSERDLRLFAINHQAKLEKAIYWELKKAIE
>NZ_CP042859.1|WP_004913775.1|1164235_1165231_+|LacI-family-DNA-binding-transcriptional-regulator
MASLKDVARLANVSLMTVSRAINNPELLKPETLKQVQQAIESLNYVPDFSARKIRGKGSRVSTVGVLALDTATTPFSVEIILSIEQTARQFGWSSFVVNITSSEDSERAVRQLLSQRPDGIIYTTMGLREVTIPEGLHNNRLVLANCIDKKGQFPAYVPDDFNGQLNAVNRLIEKGYRNPLCLYIPQETLAGKTRREAVESAWATANLPLESLQQYHLELGDEHYLDVIALINSHFKNKKPDFDVIICGNDRIAFLAYQVLLSRGLRIPQDIAVLGYDNMIGVGELFYPPLSTVVLPHYQLGQQAALHIIEERQQNSVEYVACDLLERNSF
>NZ_CP042859.1|WP_123382372.1|1163133_1163763_-|helix-turn-helix-transcriptional-regulator
MNNTIHVIVESDNVFKNKLKLMMESFGFIFRFYNNEEVFMSNYTYPNEGNVKECILLFLNNDENRISRLNNINNSFGIVPFIVLAEEPSISLCRESFKAGAFDFFPLPFKDIEILNSISNATELFLNMHEKYKKYTYLSDKFNRLSVREREIMDMILEGNTSKETAEKLSLSPRTVEVHRSNIYTKLGIKSLPQLIQEYEYINTYPKYI
>NZ_CP042859.1|WP_109912037.1|1175337_1176660_-|serine-dehydratase-subunit-alpha-family-protein
MHAQSQPLLWQYFIKAVKQEVKPALGCTEPISLAYAAAKAASFLDGQVIRVCAFVSPNLMKNGMGVTVPGTGMVGLPIAAALGAVGGDADAGLEVLKSASADAIALSKTMLAQGAITVDIKHPCDDVIYSEATVYTQTESATVIIAGSHTNIVKIVHNNHTVFDATTAQPHHESPVDCAADVPLPPVTAKSVYQFATEAPLEDIRFILEAAHLNEALSQEGLRNVYGLHIGKTLQTQRDRGLLSKDLMSEIMIRTSAASDARMGGAVLPAMSNSGSGNQGIAATMPVVVTADYLQSSEEQLARALMLSHLMAIYIHNQLPALSALCAATTAAMGAAAGIAWLLESRYEVVAMAISSMIGDVSGMICDGASNSCAMKVSTSASAAYKAVLMALDNSCVRGSDGIVSDDVDQSIANLCSLAAGSMKHTDVQIIEIMAAKARP
>NZ_CP042859.1|WP_004913749.1|1176868_1178215_-|MATE-family-efflux-transporter
MHQSDVTERSLFSLSWPIFIDIFLHLATLLINTYMVSHVSTAYLAAMGVGNQVFDLFITIFNFISVGCSVVIAQYLGAGRREKASQAIHISIAFNFILGFSSALVALFFGYSILTIMNMPSHLMADGYTYLRILGICLIPEAISIILAACLRVYGKAQPAMWVTLIANVITVFGNIIVLYGFFGLPQYGLEGVAWSTVVGRIVAVILLFCLLFYGLRIKFVPMMLIHWSRKMLGKILHIGLPSAGENLVWILHFMTASAFIGLMGETSLAAQTLYFQLSLFIMLFGISISIGNEIMVGHLVGAKRFEDAFRRGVKSLKMGFYVTIGVVIAFWLFRDPILNNITDDHGIIELLLPLFLLSVFLEPGRTINIVMVNALRASGDARFPLCTAIIFMWGVAIPLGYFLGIKMEMGLLGIWLGFFADEWLRGLTNAWRWRSRKWQSKRLDVES
>NZ_CP042859.1|WP_109912038.1|1178554_1179451_+|diaminopimelate-dehydrogenase
MTKIKAAIVGYGNIGRYALEAVLAAEDFELVGVVRRNTQDIPAELSAYKVVDDIEKLGEVDVALLCSPTRAIGPLAAKILSLGINTVDSFDVHSDIVALKHSLDDIAKQHNSVAVVSAGWDPGSDSIMRTLMLAMAPKGVTFTNFGPGMSMGHSVAAKAIDGVKDALSVTIPLGTGVHRRMVYVELESGVNFDAVTQAIKADSYFSSDETHIRQVDSIDALKDVGHGVHMTHKGVSGATHNQLFEYSMRINNPALTSQFMVSAARATMKQAAGAYTVIEIPPVNFLQGDLDTLIAKLV
>NZ_CP042859.1|WP_004913743.1|1179622_1180345_+|hypothetical-protein
MVKPPRNGKDNNQGFFPKQSSVKSVKETPHSFSIIRAFSKIINYGFSLFYVGFILSVWFFPEYYTVEIIYNLTLILIFEFILVHSGVFMAVFRDWRILTLFALFYGLFALAINMSVLGDSPLILYLYSATVANRMLFGLTSRTEQERSENMGYSALMALNFMFCIFSVLILSFLVPYGGLTPEYLRSIDYYSSISTGGEFPDKPHVAFAFGVLYFGMPIFMACLTHFLCKGHSIYQEKGK
>NZ_CP042859.1|WP_004913739.1|1180418_1181246_-|phosphoenolpyruvate-hydrolase-family-protein
MKHNRTDLLKKFRDMIARGEPIIGGGAGTGLSAKCEEAGGIDLIVIYNSGRYRMAGRGSLAGLLAYGNANEIVMDMAKEVLPVVKQTPVLAGVNGTDPFCQFDKFLDDIKATGFAGVQNFPTVGLIDGNFRANLEETGMGYGLEVEMIRLAHEKDLLTTPYVFSAEDAIAMTQAGADIIVPHMGLTTGGNIGAETALTLKDCVPLINEWAKAAKAVREDVIVLCHGGPIATPEDAEYILANCPDCHGFYGASSMERLPTEVALTATTQKFKSITR
>NZ_CP042859.1|WP_109912040.1|1181258_1182476_-|Tm-1-like-ATP-binding-domain-containing-protein
MKKYPGFIYIVTTLDTKSAELFYVSELIKNAGLAVRTVDLTTQPTQLDKNADISAHAVASFHPLGAEAVFCGDRGKAIEAMAHAFSLYLAAQTDVAAILGLGGSGGTALITPAMQVLPVGIPKLMVSTMASGDISGYIGASDISMMYSVTDVSGLNIISRKVLKNAANQIAGAVWFDSEEQPHDLKPAIALTMFGVTTPCVQQLTTQLEAQYDCLVFHATGSGGKAMEKLIDSQLLHSVLDITTTEVCDYLFGGVLACDEDRFGAIERTQTPCVMSCGALDMVNFGRPSTVPKHYQDRLFYHHNAQVTLMRTTKEENQQMGRWIAEKLNRCHGEVRFIIPTAGFSALDVEGAPFWDPIADQAFIDTLTANLIITEKRQLILSPYHINSSEFCDQVIQLHQEILNK
>NZ_CP042859.1|WP_109912041.1|1182852_1183485_+|TetR/AcrR-family-transcriptional-regulator
MSKTNSYSEYKGTRKRTYVLLVTTALDLFEKGAMPSVSELALEAGVSRATAYRYFPTQADLITATVNESLGPILTWRPQSEQTEDRIDELLTYAFPRMFEHEGVLRAALQASLQQWAQGRADPQNVNDKRLERGNRKEILAMVTSPMKSEYPQEIIDKVIRAFSVIYGSEIFLVLKDIWKMDDAQVTALAQWMSKAIMNQARADNIKRKK
>NZ_CP042859.1|WP_110732211.1|1183682_1184732_+|AbrB-family-transcriptional-regulator
MMKLLKMLGGISICALIGGGLTYLGVPLALMFGPIIAIIIFHRFGVSFAIPKHTITFVQVTLGTSVGLMFNQVSLNEADNLFLLLLMLVVCLAVQFSFSFFWFYRKVGWTKQEAMLGSVPGAMAAILALTDHTHTPPQKIVISHTIRLIILILLAGIVVGSDGDPQPIIEFPELTLVATGWLVLIIAVGVISGAILQRLKVPAPFMLTSLAAATLIQGWADIPLNFPLMLTELSMVLIGMNIGNHFIVFPLSSLIKNIYSSAQVVVVNIVLTFLITVFASWITGYDISVLLLAWAPGSMEAMTFAAITMNLDAGFVMSNHIIRMVIIQSIPSIALFWQERRQKRNSHLK
>NZ_CP042859.1|WP_004913725.1|1184791_1185139_-|YacC-family-pilotin-like-protein
MRKFILMSCLMTLLGITNSARALSTNEAEDLADLTAVFIYLKYDCGYSQIPDREIERAIVYFAKSNKWDLSNYNAEKMTVLNKESYSDLKGIPLTTEFKCQSLARDSLGLFAYVK
>NZ_CP042859.1|WP_164528499.1|1185379_1186996_+|multicopper-oxidase-CueO
MLRRDFLKLSAITYAASALPIWSRIAVAAGNYPTLAIPPLLEPDAQGNIQLVIQKGVSQFVPGKQTTTWGYNGNLLGPAISLKNGQNVNINIVNQLAEDTTVHWHGLEISGEQDGGPQAIIEPNASRKVNFTVNQSEATCWFHPHTHGKTGYQVAMGLAGLVLIKDDDSTKHGLPNDWGVDDIPVILQDKRLKDDGQIDYQLDVMSAAVGWFGDIMLTNGAVYPKHVAPKGWIRLRLLNGCNARSLNISTSDGRKMYVVASDGGLLAEPIALTELPILMGERFEVLIDASDGRAFDLVTLPVGQMGMTIAPFDQPLPVLRIETTLTKGEGDLPSTLAAIPAIPSLAGLNRRRFHLMMDMRLDMQGMMMLREKYGDQAMGNMGGHGAMMGNMNHGNMNAGNMNHGNMNGKMGSGGHCGTGSDGLDIHNANTINGQVFSMTHPAFNAPMNQQEIWGVSGRGDMMLHPFHVHGTRFRILKENGQAVEPHRQGWKDIVKVEGQVSEILVEFKHPATQQHPYMAHCHLLEHEDTGMMLGFTVS

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Crispr_ID: NZ_CP042859_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042859_3

4368594-4368716

Orphan

Consensus_repeat	Method
AGTATGTGACTTGGGTAACCGAGTGTAGCCAACGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042859_3

>merge|NZ_CP042859|3|4368594-4368716|CRISPRCasFinder
AGTATGTGACTTGGGTAACCGAGTGTAGCCAACGCACCTATCACGCGAAGAGCGACGAAAAATTAGGTTATCCCAAAGAGAATACACAAGTATGTGACTTGGGTAACCGAGTGCAGCCAACGC

>NZ_CP042859|3|3|4368594-4368716|CRISPRCasFinder
AGTATGTGACTTGGGTAACCGAGTGTAGCCAACGC	ACCTATCACGCGAAGAGCGACGAAAAATTAGGTTATCCCAAAGAGAATACACA
AGTATGTGACTTGGGTAACCGAGTGCAGCCAACGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042859.1\|WP_004907293.1\|4355774_4357037_-\|UDP-N-acetyl-D-mannosamine-dehydrogenase	unknown	unknown	gnl\|CDD\|182940
NZ_CP042859.1\|WP_004907286.1\|4358261_4359320_-\|ECA-polysaccharide-chain-length-modulation-protein	unknown	unknown	gnl\|CDD\|236943
NZ_CP042859.1\|WP_164529256.1\|4378340_4379867_+\|YifB-family-Mg-chelatase-like-AAA-ATPase	unknown	unknown	gnl\|CDD\|223679
NZ_CP042859.1\|WP_004906122.1\|4370393_4371290_+\|HTH-type-transcriptional-activator-IlvY	unknown	unknown	gnl\|CDD\|236961
NZ_CP042859.1\|WP_004907250.1\|4375714_4375984_-\|acetolactate-synthase-2-small-subunit	unknown	unknown	gnl\|CDD\|236862
NZ_CP042859.1\|WP_164529253.1\|4368747_4370220_-\|ketol-acid-reductoisomerase	unknown	unknown	gnl\|CDD\|235368
NZ_CP042859.1\|WP_109912173.1\|4354710_4355778_-\|dTDP-glucose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|182313
NZ_CP042859.1\|WP_004907290.1\|4357033_4358164_-\|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)	unknown	unknown	gnl\|CDD\|223458
NZ_CP042859.1\|WP_004907252.1\|4374776_4375703_-\|branched-chain-amino-acid-transaminase	unknown	unknown	gnl\|CDD\|235841
NZ_CP042859.1\|WP_004907274.1\|4363487_4364774_+\|ATP-dependent-RNA-helicase-RhlB	unknown	unknown	gnl\|CDD\|235314
NZ_CP042859.1\|WP_004907240.1\|4379945_4380284_-\|DUF413-domain-containing-protein	unknown	unknown	gnl\|CDD\|236825
NZ_CP042859.1\|WP_004907283.1\|4359349_4360435_-\|UDP-N-acetylglucosamine--undecaprenyl-phosphate-N-acetylglucosaminephosphotransferase	unknown	unknown	gnl\|CDD\|237913
NZ_CP042859.1\|WP_164529255.1\|4375980_4377627_-\|acetolactate-synthase-2-catalytic-subunit	unknown	unknown	gnl\|CDD\|181601
NZ_CP042859.1\|WP_109912167.1\|4366340_4368365_-\|DNA-helicase-Rep	unknown	unknown	gnl\|CDD\|182838
NZ_CP042859.1\|WP_004907271.1\|4364785_4366288_+\|guanosine-5'-triphosphate,3'-diphosphate-diphosphatase	unknown	unknown	gnl\|CDD\|236826
NZ_CP042859.1\|WP_164529254.1\|4371281_4372856_-\|threonine-ammonia-lyase,-biosynthetic	unknown	unknown	gnl\|CDD\|236417
NZ_CP042859.1\|WP_004906109.1\|4361064_4362324_-\|transcription-termination-factor-Rho	unknown	unknown	gnl\|CDD\|236490
NZ_CP042859.1\|WP_071524553.1\|4377759_4377861_-\|ilv-operon-leader-peptide	unknown	unknown	gnl\|CDD\|170429
NZ_CP042859.1\|WP_004907277.1\|4363043_4363370_-\|thioredoxin-TrxA	unknown	unknown	gnl\|CDD\|181812
NZ_CP042859.1\|WP_123382184.1\|4372858_4374709_-\|dihydroxy-acid-dehydratase	unknown	unknown	gnl\|CDD\|237104

Protein	Function_ID	Function_description	E-value
NZ_CP042859.1\|WP_004907293.1\|4355774_4357037_-\|UDP-N-acetyl-D-mannosamine-dehydrogenase	gnl\|CDD\|182940	PRK11064, wecC, UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional.	0
NZ_CP042859.1\|WP_004907286.1\|4358261_4359320_-\|ECA-polysaccharide-chain-length-modulation-protein	gnl\|CDD\|236943	PRK11638, PRK11638, ECA polysaccharide chain length modulation protein.	0
NZ_CP042859.1\|WP_164529256.1\|4378340_4379867_+\|YifB-family-Mg-chelatase-like-AAA-ATPase	gnl\|CDD\|223679	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP042859.1\|WP_004906122.1\|4370393_4371290_+\|HTH-type-transcriptional-activator-IlvY	gnl\|CDD\|236961	PRK11716, PRK11716, HTH-type transcriptional activator IlvY.	0
NZ_CP042859.1\|WP_004907250.1\|4375714_4375984_-\|acetolactate-synthase-2-small-subunit	gnl\|CDD\|236862	PRK11152, ilvM, acetolactate synthase 2 small subunit.	4.8868e-35
NZ_CP042859.1\|WP_164529253.1\|4368747_4370220_-\|ketol-acid-reductoisomerase	gnl\|CDD\|235368	PRK05225, PRK05225, ketol-acid reductoisomerase; Validated.	0
NZ_CP042859.1\|WP_109912173.1\|4354710_4355778_-\|dTDP-glucose-4,6-dehydratase	gnl\|CDD\|182313	PRK10217, PRK10217, dTDP-glucose 4,6-dehydratase; Provisional.	0
NZ_CP042859.1\|WP_004907290.1\|4357033_4358164_-\|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)	gnl\|CDD\|223458	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane].	0
NZ_CP042859.1\|WP_004907252.1\|4374776_4375703_-\|branched-chain-amino-acid-transaminase	gnl\|CDD\|235841	PRK06606, PRK06606, branched-chain amino acid transaminase.	0
NZ_CP042859.1\|WP_004907274.1\|4363487_4364774_+\|ATP-dependent-RNA-helicase-RhlB	gnl\|CDD\|235314	PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional.	0
NZ_CP042859.1\|WP_004907240.1\|4379945_4380284_-\|DUF413-domain-containing-protein	gnl\|CDD\|236825	PRK11027, PRK11027, hypothetical protein; Provisional.	5.027e-70
NZ_CP042859.1\|WP_004907283.1\|4359349_4360435_-\|UDP-N-acetylglucosamine--undecaprenyl-phosphate-N-acetylglucosaminephosphotransferase	gnl\|CDD\|237913	PRK15119, PRK15119, UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase.	0
NZ_CP042859.1\|WP_164529255.1\|4375980_4377627_-\|acetolactate-synthase-2-catalytic-subunit	gnl\|CDD\|181601	PRK08978, PRK08978, acetolactate synthase 2 catalytic subunit; Reviewed.	0
NZ_CP042859.1\|WP_109912167.1\|4366340_4368365_-\|DNA-helicase-Rep	gnl\|CDD\|182838	PRK10919, PRK10919, ATP-dependent DNA helicase Rep; Provisional.	0
NZ_CP042859.1\|WP_004907271.1\|4364785_4366288_+\|guanosine-5'-triphosphate,3'-diphosphate-diphosphatase	gnl\|CDD\|236826	PRK11031, PRK11031, guanosine-5'-triphosphate,3'-diphosphate diphosphatase.	0
NZ_CP042859.1\|WP_164529254.1\|4371281_4372856_-\|threonine-ammonia-lyase,-biosynthetic	gnl\|CDD\|236417	PRK09224, PRK09224, threonine ammonia-lyase IlvA.	0
NZ_CP042859.1\|WP_004906109.1\|4361064_4362324_-\|transcription-termination-factor-Rho	gnl\|CDD\|236490	PRK09376, rho, transcription termination factor Rho; Provisional.	0
NZ_CP042859.1\|WP_071524553.1\|4377759_4377861_-\|ilv-operon-leader-peptide	gnl\|CDD\|170429	PRK10424, PRK10424, ilv operon leader peptide.	0.00037387
NZ_CP042859.1\|WP_004907277.1\|4363043_4363370_-\|thioredoxin-TrxA	gnl\|CDD\|181812	PRK09381, trxA, thioredoxin TrxA.	1.53543e-63
NZ_CP042859.1\|WP_123382184.1\|4372858_4374709_-\|dihydroxy-acid-dehydratase	gnl\|CDD\|237104	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional.	0

>NZ_CP042859.1|WP_109912167.1|4366340_4368365_-|DNA-helicase-Rep
MRLNPSQQQAVEYVEGPCLVLAGAGSGKTRVITNKIAHLIRQCGYQPRQIAAVTFTNKAAREMKERVAQTLGKKEARGLIISTFHTLGLEIIKREYKALGIKANFSLFDDQDQMALLKELTFDLLEEDKDLLKQLISAISNWKNDLISPQQVIGQARSEKEHHFAECYRRYELHLKSCNVLDFDDLISKPTLLLYQNEEVRERWQQKIRYLLVDEYQDTNTSQYQLVKLLVGQRARFTVVGDDDQSIYSWRGARPQNLVLLNQDFPKLNVIKLEQNYRSSERILKAANILIANNPHVFEKKLFSELGYGAPLKVLTANNEDHEAERVIGELIAHHFINKTEYKDYAILYRGNHQSRIFEKMLMQNRIPYRISGGTSFFSRPEIKDLLAYLRVLTNPEDDSAFLRIVNTPRREIGPKTIQKLGEWANQRGKSLYQASFDLGLEQILKGKGLEALQRFTHWMDSIVRTSEREPLIAVRDLLREMDYESWLYETSTSTKAAEMRMKNVNQLFTWMSEMVEGDELNDPMTLSQVVTRFTLRDMMERGEDDEESDQVQLMTLHASKGLEFPYVFLVGMEEGLLPHQSSIDENNIDEERRLAYVGITRAQRELFFSHCRERRQYGELIRPELSRFLLELPQDDLQWEQQRKVVSAQERMQKGQSALADIKARLGLNKKSE
>NZ_CP042859.1|WP_004907271.1|4364785_4366288_+|guanosine-5'-triphosphate,3'-diphosphate-diphosphatase
MLKSSSLYAAIDLGSNSFHMLVVRETAGSIQVISRVKRKVRLAAGLDNNNLLSEQAMERGWQCLRLFSEHLQDIPNTQIRVVATATLRLAKNADIFIEKASQILGNPVKVIQGEEEARLIYQGVAHTTGGPDQRLVVDIGGGSTELVTGTGAKAEQLYSLEMGCVTWLERYFGDRSLTEENFSAAQAAAHNVIAPIADALKTHGWKICVGASGTVQAIQEIMIAQGMDELITLSKLQQLKRKAIQCQKLEELEIDGLTFERALVFPSGLSILIAIFEALEIDNMTLAGGALREGLVYGMLQLPIEQDIRARTVRNIQRRFQVDIEQASRVRQLAEYFYLQVAKDWGLDTRCRDLLSSACALHEIGLSVDFRKGPEHASYLITHLDLPGFTPAQKRLLAALLINQQGPVDLTPLSQQNALPMQHAYNLCRLLRLAIIFASRRRDDTLPALRLNVNAQRLTITLPYRWLSDHPLRAENLQQEVQWQGYVNWALELEERNSSN
>NZ_CP042859.1|WP_004907274.1|4363487_4364774_+|ATP-dependent-RNA-helicase-RhlB
MSKAHLTEKKFSDFALHPKVIEALNKKGFNFCTPIQASTLPFTVEGKDVAGQAQTGTGKTLAFLTSTFHYLLTHPAIEGKKANQPRALIMAPTRELAVQIYSDAKELAEYTGLKMGLAYGGDGYDEQLKVLQNGVDILIGTTGRLIDYAKQGHVDLSAIQVVVLDEADRMYDLGFIKDIRWIFRRMPGAAERLNLLFSATLSYRVRELAFEQMNNPEYVEVEPLQKTGHRIKEELFYPSNEEKMRLLQTLLEEEWPERCIIFANTKHRCDDIWAHLAADGHRVGLLTGDVAQKKRLRILEQFTQGHLDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGESGNSISLACEEYSLNLPAIEEYIQHSIPVSKYNSDALLSDLPAPKRRHRPRPGGPRRNSNSQRRHNGPRNNHKRPG
>NZ_CP042859.1|WP_004907277.1|4363043_4363370_-|thioredoxin-TrxA
MSDKIIHITDASFATEVLNASSPVLVDFWAAWCGPCKMIAPILDEVAEEYTGKLTIAKLNIDENPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKTQLKEFLDENL
>NZ_CP042859.1|WP_004906109.1|4361064_4362324_-|transcription-termination-factor-Rho
MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFSILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDKPENARSKILFENLTPLHANRRLRMERGNGSTEDLTARVLDLAAPIGRGQRGLIVAPPKAGKTMLLQNIAANIAHNYPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPAARHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTSQDELQKMWILRKIIHPMGEIDAMEFLISKLAMTKTNEEFFDFMKRA
>NZ_CP042859.1|WP_004907283.1|4359349_4360435_-|UDP-N-acetylglucosamine--undecaprenyl-phosphate-N-acetylglucosaminephosphotransferase
MDTIHFVTNLFYVFLFSLVFIFLARVVAIKIGLVDKPNFRKKHVGLVPLVGGISVFFGICFAFYITGEYIPHKWLYIACAGLLVFIGALDDRFDISVKLRAGIQAVVAVVMMTAAGLKLESLGHAFGPWELVLGPFGYIVTLFAVWAAINAFNMVDGIDGLLGGLSSVSFGALGFLLYQNGNYALAFWCFAFIAAILPYILLNLGVLGRRFKVFMGDAGSTLIGFTIIWILVASTQEEVHPINPVTALWIIAIPLMDMVAIMYRRIRKGMSPFSPDRQHIHHLIMRSGFTPKGAFVLITLSAAALACVGIIGEHLTFVPEWVMLALFLLVFMMYGYCIKRAWKVARFIKRVRRRARRGAVR
>NZ_CP042859.1|WP_004907286.1|4358261_4359320_-|ECA-polysaccharide-chain-length-modulation-protein
MNNSETQPSQHQSPIEPELDIRGLCRSLWQGKIWIVAFAVIFAAIALGASYFMQPKWSATAITDLPTVNNLGSYYSQQQFLRNLDSRINNTGQEGQLPTIAKEAYQEFTKQLGSYDTRRQFWLTTDYYKQRLENDPKADAALLDELINDIEFTPADEVKNLTDSIKLVAETSADANQLLRQYTQFANQRATTNLNDEIKGTWATKMQSMKALVKREDMVAKAAYERRLNALEQALKVAEKQGIVRNQSATPVDEIPDSKMFMLGAPLLQAQIETLKATGPDHDSDYDQNIAMLSTLSVGPTLQDNFQAYRYLRTPEEPVKRDSPRRAFMMVLWGAIGMLVGAGVVLARRRPS
>NZ_CP042859.1|WP_004907290.1|4357033_4358164_-|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)
MKVLTVFGTRPEAIKMAPLVHALAGDADFEAKVCVTAQHREMLDQVLKLFEITPDYDLNIMKPGQDLTDITCRILEGLKSVFADFQPDVVLVHGDTATTMATSLAAFYHRIPVGHVEAGLRTGDLYSPWPEEANRKIAGHLAMYHFAPTENSRQNLLKESIPDSHIFVTGNSVIDALLWVRDKVMSDQYMMEKLAANYPFIDPNKKMILVTGHRRESFGGGFERICHALAEIAQAHPDVQVVYPVHLNPNVSEPVKRILHDIDNIILISPQDYLPFVYLMNHAYLILTDSGGIQEEAPSLGKPVLVMRDTTERPEAVDAGTVRLVGTDTQKIVKEVNRLLTDDAEYHEMSRAHNPYGDGHACQRILAALKSNQVKL
>NZ_CP042859.1|WP_004907293.1|4355774_4357037_-|UDP-N-acetyl-D-mannosamine-dehydrogenase
MSFETISVIGLGYIGLPTAAAFASRKKQVVGVDVNQHAVDTINQGKIHIVEPELDIVVKKAVEEGHLKAFTKPQPADAYLIAVPTPFKGEHEPDLAYVRAAAESVAPVLKKGDLVILESTSPVGTTEQMAEWMAAARPDLTFPHQAGEDADIDVAYCPERVLPGQVMVELIKNDRVVGGMTPKSSLRASELYNIFLEGECVITNSRTAEMCKLTENSFRDVNIAFANELSLICAEQDINVWELISLANRHPRVNILQPGPGVGGHCIAVDPWFIVAQNPKQSRLIHTARLVNDGKPIWVVDQVKAAVADCLVETGKKASEVTIACFGLSFKPNIDDLRESPAMHITKMVANWNPGKTYAVEPHIHELPTSLKGISELVSIEKAVNEADVILMLVDHNMFKGIQGSAIPQKWVVDTKGVWR
>NZ_CP042859.1|WP_109912173.1|4354710_4355778_-|dTDP-glucose-4,6-dehydratase
MKRILITGGAGFIGSAVVRHIIENTDDSAVVLDCLTYAGNLESLATVASNPRYAFEQVNICDRAALDAVFEKYQPDAVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARHYWSALNDEKKAAFRFHHISTDEVYGDLEGPDGFFTETTPYAPSSPYSASKASSDHLVRAWQRTYGLPTMITNCSNNYGPYHFPEKLIPLIILNALAGKPLPVYGKGEQIRDWLFVEDHARALHLVATTAQPGTTYNIGGHNERRNIDVVETICELLEELRPQKPEGVAHYRDLITYVKDRPGHDMRYAIDAAKIERELGWTPQETFESGIRKTVQWYLNNETWWRRVQDGSYAGERLGLGN
>NZ_CP042859.1|WP_164529253.1|4368747_4370220_-|ketol-acid-reductoisomerase
MANYFNTLNLREQLAQLGKCRFMQREEFADEAGFLKGKKIVIVGCGAQGLNQGLNMRDSGLDIAYALRDEAIAEKRASWRKATENGFKVGTYEELIPTADLVINLTPDKQHSTVVRAVQPMMKQGAALGYSHGFNIVEVGEEIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCGMLQAGALLSYDKMVADGVEPGYAGKLIQFGWETITEALKQGGITLMMDRLSNPAKVRAYALSEQLKTIMAPLFQKHMDDIISGEFSATMMADWANDDKNLLTWREETGKTAFENYPEYEGKIAEQEYFDHGVLLVAMVKAGVELAFDTMLEAGILEESAYYESLHELPLIANTIARKRLYEMNVVISDTAEYGNYLFSFAAVPMLKEFMTKLQAGDLAKPVADNGTDNAQLRDINEAIRNHPIEKIGKTLRGYMTDMKKIAVG
>NZ_CP042859.1|WP_004906122.1|4370393_4371290_+|HTH-type-transcriptional-activator-IlvY
MDIRDLKLFLHLAQSCHFGRTSKAMHVSPSTLSRQIQRLEEQLGHPLFVRDNRSVKLTQAGEHLKQFAQQTLLQYQQLQHALNQQSPSLSGELHLFCSVTAAYSHLPEVLDKFRALHPLVEIKLTTGDAADAVEKVETHEADLGIAGKPERLPDNVRFAKIGEIPLVLIAPSLPCAVRSMVTEAEPDWSTVPFILPEHGPSRKRIELWFRRHNINNPVIYATVSGHEAIVSMVALGCGIALIPSVVVDNSPEPVRSRISQLDNISMVEPFELGVCLLSKRLSEPLIKAFWELLPDNSI
>NZ_CP042859.1|WP_164529254.1|4371281_4372856_-|threonine-ammonia-lyase,-biosynthetic
MAAAKPLPVAPTGADYLKAALSAPVYEAAQVTPLQQMDKISSRLGNTILVKREDRQPVHSFKLRGAYAMIASLTEEQKSKGVVTASAGNHAQGVALSANRVGVKAKIVMPVATADIKVDAVRSFGGEAILHGANFDEAKAKAIAMAAEDGYTFVPPFDHPSVIAGQATIALELLQQDVHLDRIFIPVGGGGLIAGVAVIIKQLMPEIKIIGVESEDAACLKAALEAGHPVDLPRVGLFAEGVAVKRIGDETFRLCQQYVDDVITVDSDSICAALKDIFEDVRAIAEPSGALALAGLKKYVQQHNIKGERLAHILSGANMNFHGLRYVSERCEIGEQREALLAVTIPEQKGSFLRFCQLLGHRAITEFNYRYTDADPERACIFVGVRLSGRDGERSEIIQELRSNGYEVDDLSDDEMAKLHVRYMIGGRPSKPLDERLYSFEFPESPGALLRFLETLGTHWNITLFHYRSHGTDYGRVLAAFELAGPEVRFDRHLDALGYEYHDETGNPSFRFFLAPQDNQRTLD
>NZ_CP042859.1|WP_123382184.1|4372858_4374709_-|dihydroxy-acid-dehydratase
MPKYRSATTTHGRNMAGARALWRATGMTDADFGKPIIAVVNSFTQFVPGHVHLRDLGKLVAEQIENAGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRELIADSVEYMVNAHCADAMVCISNCDKITPGMLMASLRLNIPVIFVSGGPMEAGKTKLSDQIIKLDLVDAMIQGANPNVSDADSEQIERSACPTCGSCSGMFTANSMNCLTEALGLSQPGNGSLLATHADRETLFINAGKRIVELTKRYYEQDDESALPRNIANKSAFENAMTLDIAMGGSTNTVLHLLAAAQEAEIDFTMDDIDRLSRKVPHLCKVAPSTQKYHMEDVHRAGGVIGILGELSRAGLLQENVTNILGLSFQETLAQYDVMLTKDEAVKSMFSAGPAGIRTTKAFSQNCRWPSLDTDRENGCIRSIEHAYSLDGGLAVLSGNIAEDGCIVKTAGVDEGSLTFRGPAKVFESQDDAVEAILGGKVVEGDVVVIRYEGPKGGPGMQEMLYPTSYLKSMGLGKSCALITDGRFSGGSSGLSIGHISPEAASGGLLALVQDGDIIDIDIPKRTMVLDVSESELSQRREAELARGDKAYTPRNRQREVSFALRAYASLATSADKGAVRDKSKLGG
>NZ_CP042859.1|WP_004907252.1|4374776_4375703_-|branched-chain-amino-acid-transaminase
MTKKADFIWFNGEMTPWADAKVHVMSHALHYGTSVFEGVRCYDSHKGPVVFRHREHMQRLHDSAKIYRMPVSYSVEELMEACRATLRKNNLVSAYIRPLVFIGDVGMGVNPPDGYNTDVILAAFPWGAYLGEEALDQGIDAMVSSWNRVAPNTIPTGAKAGGNYLSSLLVGSEARRHGYQEGIALDVHGYLSEGAGENIFEVKDGILYTPPFTSSALPGITRDAILTLAKDLGIEVREQTLSRESLYLADEVFMTGTAAEITPVRSVDGIQVGIGRCGPVTKQIQQAFFGLFDGTTEDKWGWLDPVNP
>NZ_CP042859.1|WP_004907250.1|4375714_4375984_-|acetolactate-synthase-2-small-subunit
MMQHQISILARFRPEVLERILRVTRHRGFRINAMNMGQSTDGDNVNIELTVSSQRPLTQLCAQLTKLSDITEVEVLQQESRLLRTQSAM
>NZ_CP042859.1|WP_164529255.1|4375980_4377627_-|acetolactate-synthase-2-catalytic-subunit
MNGAQWLVQALRTQGVDTVFGYPGGAIMPVYDALYDGGVEHLLCRHEQGAVIAAIGYARSTGKTGVCIATSGPGATNVITGLADALLDSVPVVAITGQVASEFIGTDAFQEIDVLGLSLACTKHSFLVEDIEDLPRILAEAFAIANSGRPGPVLIDIPKDIQLQHAELSAFLMPVEQEVTSPLSEIQQARMLLEQSEKPMLYVGGGVGMSGAVKELREFIEFTGIPSVATLKGLGAVSPLDENYLGMLGMHGTKAANISVQRCDLLIAVGARFDDRVTGKLNTFAPNAKVIHIDIDHVELDKLRQTHVALHGDAKVLLPELMLKKSIAPWQQEVQQLKKEFGWRYDHPGEPIYAPLLLKQLSDKMQPNTVVTTDVGQHQMWSAQHITVDGPENFLTSSGLGTMGFGIPAAIGAQVARPEDTVVCVSGDGSFMMNVQELGTIKRKQLPVKILLIDNQRLGMVRQWQELFFEQRYSETILTDNPDFVALASAFGIKGQRITDKSEVNAALDELLNSEGAYLLQVSINELENVWPLVPPGASNEKMMEKPL
>NZ_CP042859.1|WP_071524553.1|4377759_4377861_-|ilv-operon-leader-peptide
MNAFIQAVSLIIISVVVIIIPPCGAALGRRRLK
>NZ_CP042859.1|WP_164529256.1|4378340_4379867_+|YifB-family-Mg-chelatase-like-AAA-ATPase
MTLAIVYTRASIGLEAPLVTVEAHISNGLPGLTLVGLPETAVKEARDRVRSALLNSGFEYPAKKMTVNLAPADLPKESGRYDLAIAIAILASSGQLPHEPLKQYEFLGELALSGDVRYVSSAIPAAQSALKQQRSLILSMENQHQLGLLPDNSVYFATSLLELCHFLHNKKTLLCNQQIHQAPLSIKQEGDINDIIGQEHGKRALEICAAGGHNLLLLGPPGTGKTMLASRLMTLLPPLTSQEALEVASLHSLSENTKEDMNWPIRPFRAPHHSASIAALIGGGSLPKPGEISLAHHGILFLDELPEFSRSVLDSLREPLESRKISISRAKAKVCYPASFQLVAALNPSPTGHYQGEMSRSTPSRILRYLSRISGPFIDRFDLSIEIPLLPLGSLSSQTNQGETSEHVRQRVIEARNRQLRRAGKINSLLTPRETTQFCLLTAKDALFLEHALNKLGLSIRAWHRILRVARTIADLNAAETIERSDLLEALGYRAMDKLLLHLQKQVS
>NZ_CP042859.1|WP_004907240.1|4379945_4380284_-|DUF413-domain-containing-protein
MADSFITTNRFFDNKHYPRGFSRHGDFTIKEAQLLERLGQAFNELDIGKREPQTEEEKLFVAVCRGEREPATPEEKVWAKYSSRINRPKRFHTLSGGKPQIDPSEDYTDTDD

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

525493 : 533927

Escherichia_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_164528338.1\|525493_527911_+	molybdopterin-dependent oxidoreductase	A0A077SK27	Escherichia_phage	1.4e-138	36.2
WP_164528339.1\|527907_528546_+	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	1.9e-63	55.8
WP_123382763.1\|528542_529442_+	dimethyl sulfoxide reductase anchor subunit	NA	NA	NA	NA
WP_164528340.1\|529476_530043_+	DmsD	A0A077SLS7	Escherichia_phage	5.0e-15	37.5
WP_004915049.1\|530248_530671_+	DoxX family protein	NA	NA	NA	NA
WP_164528341.1\|530757_531552_-	nucleotidyltransferase domain-containing protein	A0A2D1GQQ2	Pseudomonas_phage	9.4e-44	43.0
WP_117163018.1\|531578_532805_-	RtcB family protein	A0A1V0EEW8	Caulobacter_phage	8.6e-137	62.3
WP_164528342.1\|532808_533927_-	slipin family protein	A0A2P1EMF1	Moumouvirus	6.4e-14	26.9

DBSCAN-SWA_2

688392 : 774817

Enterobacteria_phage(24.0%)

holin,integrase,portal,tail,protease,terminase,tRNA

attL 686711:686732|attR 736266:736287

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
686711:686732	attL	NA	NA	NA	NA
WP_109911846.1\|688392_689628_+	multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR	A0A0C5K935	Enterococcus_phage	8.8e-89	44.9
WP_004914750.1\|689817_691485_-	energy-dependent translational throttle protein EttA	A0A1V0SKJ1	Klosneuvirus	1.6e-40	26.4
WP_164528375.1\|691517_692816_-\|integrase	site-specific integrase	Q20GI2	Phage_258-320	3.8e-127	51.5
WP_164528376.1\|692845_693175_-	DUF1233 family excisionase	NA	NA	NA	NA
WP_094961256.1\|693213_693783_-	3'-5' exoribonuclease	A0A1W6JP74	Morganella_phage	6.7e-52	56.8
WP_164528377.1\|693792_694263_-	hypothetical protein	NA	NA	NA	NA
WP_164528378.1\|694265_694898_-	hypothetical protein	M1F3E2	Salmonella_phage	4.7e-30	41.0
WP_164528379.1\|694899_695355_-	hypothetical protein	A0A248SL53	Klebsiella_phage	5.1e-26	38.0
WP_141240686.1\|695364_695568_-	hypothetical protein	A0A1U9ZAG7	Proteus_phage	1.2e-06	48.1
WP_164528380.1\|695650_696553_-	recombination-associated protein RdgC	A0A1W6JP69	Morganella_phage	8.7e-78	50.8
WP_123382619.1\|696701_696890_-	carbon storage regulator CsrA	A0A2I7RT00	Vibrio_phage	9.1e-14	70.6
WP_164528381.1\|696997_697264_+	hypothetical protein	NA	NA	NA	NA
WP_164528382.1\|697241_697460_-	hypothetical protein	NA	NA	NA	NA
WP_164528383.1\|697489_697699_-	hypothetical protein	NA	NA	NA	NA
WP_164528384.1\|698048_698711_-	helix-turn-helix domain-containing protein	A0A1R3Y604	Salmonella_virus	1.4e-19	63.1
WP_164528385.1\|698752_698974_+	helix-turn-helix domain-containing protein	Q76H55	Enterobacteria_phage	5.3e-21	67.6
WP_164528386.1\|699024_699483_+	hypothetical protein	A0A1W6JP72	Morganella_phage	2.5e-49	64.0
WP_164528387.1\|699566_699743_+	hypothetical protein	NA	NA	NA	NA
WP_071548505.1\|699732_699912_+	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_164528388.1\|699920_700970_+	helix-turn-helix domain-containing protein	S5FM81	Shigella_phage	9.5e-60	62.5
WP_164529316.1\|700969_701215_+	hypothetical protein	NA	NA	NA	NA
WP_164528389.1\|701214_701859_+	phage N-6-adenine-methyltransferase	Q8HA94	Salmonella_phage	3.0e-80	63.6
WP_164528390.1\|701855_702341_+	hypothetical protein	NA	NA	NA	NA
WP_096863812.1\|702337_702724_+	hypothetical protein	A0A1W6JP80	Morganella_phage	1.2e-31	54.4
WP_164528391.1\|702720_702900_+	hypothetical protein	NA	NA	NA	NA
WP_164528392.1\|702896_703283_+	RusA family crossover junction endodeoxyribonuclease	K7PKN5	Enterobacterial_phage	8.1e-25	52.6
WP_164528393.1\|703279_703819_+	DUF968 domain-containing protein	A0A1W6JP62	Morganella_phage	3.3e-48	53.2
WP_164528394.1\|703850_704288_+	antitermination protein Q	S5M7R9	Escherichia_phage	2.7e-32	54.3
WP_164528395.1\|704441_704639_+	TrmB family transcriptional regulator	A5LH80	Enterobacteria_phage	3.9e-07	50.0
WP_164528396.1\|704782_705841_+	site-specific DNA-methyltransferase	A0A1W6JP25	Morganella_phage	2.3e-146	76.5
WP_109913315.1\|705964_706165_+\|holin	holin	A0A1W6JNY9	Morganella_phage	1.4e-17	73.7
WP_164528397.1\|706145_706718_+	lysozyme	A0A1R3Y5W5	Salmonella_virus	4.9e-50	63.4
WP_164528398.1\|706776_707274_+	hypothetical protein	K7P6W1	Enterobacteria_phage	3.3e-26	45.5
WP_164528399.1\|707447_708227_+	protein kinase	I6PD73	Cronobacter_phage	1.2e-30	33.6
WP_164528400.1\|708223_708949_+	phosphatase 2C family protein	NA	NA	NA	NA
WP_110591874.1\|709815_710319_+	DUF1441 family protein	A5LH26	Enterobacteria_phage	1.1e-40	54.9
WP_164528401.1\|710315_712427_+\|terminase	phage terminase large subunit family protein	A5LH27	Enterobacteria_phage	5.2e-283	65.3
WP_094963137.1\|712423_712639_+	hypothetical protein	K7PMB5	Enterobacterial_phage	1.6e-14	57.1
WP_110591871.1\|712635_714141_+\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	1.8e-189	66.0
WP_164529317.1\|714178_716149_+\|protease	Clp protease ClpP	S5M7Q8	Escherichia_phage	6.9e-237	62.6
WP_094963140.1\|716233_716581_+	DUF2190 family protein	Q9EYD5	Enterobacteria_phage	2.9e-13	40.7
WP_164528402.1\|716584_716881_+	ATP-binding protein	NA	NA	NA	NA
WP_094963142.1\|716864_717422_+\|tail	phage tail protein	A5LH33	Enterobacteria_phage	3.1e-33	46.8
WP_164528403.1\|717421_717820_+\|tail	phage tail protein	K7PJT1	Enterobacteria_phage	3.9e-30	44.7
WP_164528404.1\|717831_718344_+\|tail	phage tail protein	O64327	Escherichia_phage	1.3e-57	63.1
WP_164529318.1\|718708_719110_+	hypothetical protein	Q9B021	Phage_GMSE-1	9.3e-16	76.8
WP_164528405.1\|719204_719582_+\|tail	phage minor tail protein G	NA	NA	NA	NA
WP_164528406.1\|719605_719920_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	1.7e-12	45.5
WP_164528407.1\|719894_722963_+\|tail	phage tail tape measure protein	E4WL33	Enterobacteria_phage	1.3e-120	35.5
WP_164528408.1\|723009_723339_+\|tail	phage tail protein	A0A1B5FPI1	Escherichia_phage	4.1e-09	43.7
WP_164528409.1\|723407_723965_+	zinc ribbon domain-containing protein	I6PDJ9	Cronobacter_phage	3.2e-22	39.1
WP_164528410.1\|724029_724728_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	3.3e-69	54.3
WP_164528411.1\|724736_725465_+\|tail	phage tail protein	A0A0P0ZDJ9	Stx2-converting_phage	2.9e-84	59.1
WP_164528412.1\|725368_726031_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	9.6e-50	47.2
WP_164528413.1\|726033_729636_+	DUF1983 domain-containing protein	A0A0K2FI38	Escherichia_phage	9.9e-266	53.1
WP_164528414.1\|729632_730724_+	hypothetical protein	NA	NA	NA	NA
WP_164528415.1\|732430_732709_-	DinI family protein	NA	NA	NA	NA
WP_164528416.1\|733455_735369_+	murein transglycosylase	A0A1P8CWQ1	Bacillus_phage	2.1e-12	39.1
WP_004914745.1\|735694_736012_+	trp operon repressor	NA	NA	NA	NA
WP_004914743.1\|736453_736990_-	non-canonical purine NTP phosphatase	NA	NA	NA	NA
736266:736287	attR	NA	NA	NA	NA
WP_102138956.1\|737042_737690_+	2,3-diphosphoglycerate-dependent phosphoglycerate mutase GpmB	NA	NA	NA	NA
WP_004914738.1\|737733_738648_-	MDR efflux pump AcrAB transcriptional activator RobA	NA	NA	NA	NA
WP_004914737.1\|738833_739310_+	protein CreA	NA	NA	NA	NA
WP_004905684.1\|739420_740137_-	two-component system response regulator ArcA	NA	NA	NA	NA
WP_071524551.1\|741131_741284_+	thr operon leader peptide	NA	NA	NA	NA
WP_109911987.1\|741368_743828_+	bifunctional aspartate kinase/homoserine dehydrogenase I	NA	NA	NA	NA
WP_109911848.1\|743831_744761_+	homoserine kinase	NA	NA	NA	NA
WP_109911849.1\|744764_746060_+	threonine synthase	NA	NA	NA	NA
WP_004914728.1\|746186_746834_-	hypothetical protein	NA	NA	NA	NA
WP_004914725.1\|746890_747106_-	hypothetical protein	NA	NA	NA	NA
WP_123382507.1\|747321_747789_-	hypothetical protein	NA	NA	NA	NA
WP_164528417.1\|747903_749289_-	heavy metal sensor histidine kinase	A0A1V0SGX0	Hokovirus	8.8e-13	29.3
WP_109911851.1\|749281_749965_-	heavy metal response regulator transcription factor	W8CYM9	Bacillus_phage	3.8e-33	35.6
WP_164528418.1\|750119_751514_+	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_109911853.1\|751510_751864_+	cation transporter	NA	NA	NA	NA
WP_110731402.1\|751881_753150_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_110731401.1\|753153_756291_+	CusA/CzcA family heavy metal efflux RND transporter	NA	NA	NA	NA
WP_164528419.1\|756332_756755_+	metal-binding protein	NA	NA	NA	NA
WP_004914707.1\|756806_757796_-	oxidoreductase aryl-alcohol dehydrogenase like protein	NA	NA	NA	NA
WP_109911856.1\|757987_758764_-	peroxide stress protein YaaA	NA	NA	NA	NA
WP_004914703.1\|759148_760102_+	transaldolase	A0A127KNC6	Cyanophage	3.6e-13	32.7
WP_164528420.1\|760293_760875_+	molybdopterin adenylyltransferase	NA	NA	NA	NA
WP_004905651.1\|760954_761521_-	acetate uptake transporter	NA	NA	NA	NA
WP_109911857.1\|761856_763773_+	molecular chaperone DnaK	G8DDB7	Micromonas_pusilla_virus	4.5e-148	49.3
WP_109911858.1\|763883_765020_+	molecular chaperone DnaJ	A0A0P0YNN4	Yellowstone_lake_phycodnavirus	7.0e-24	33.3
WP_004914697.1\|765088_766489_-	amidohydrolase	NA	NA	NA	NA
WP_164528421.1\|766609_767458_-	EamA family transporter	NA	NA	NA	NA
WP_004914692.1\|767849_769019_+	Na+/H+ antiporter NhaA	A0A2H4J5W3	uncultured_Caudovirales_phage	2.0e-90	51.9
WP_004914690.1\|769214_770135_+	transcriptional activator NhaR	NA	NA	NA	NA
WP_004914688.1\|770189_770450_-	30S ribosomal protein S20	NA	NA	NA	NA
WP_109911859.1\|771039_771978_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA
WP_004914683.1\|772006_774817_+\|tRNA	isoleucine--tRNA ligase	A0A2K9L9X8	Tupanvirus	2.1e-82	27.3

DBSCAN-SWA_3

1784094 : 1842892

Cronobacter_phage(36.36%)

plate,capsid,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004912558.1\|1784094_1785516_-\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
WP_004912555.1\|1787733_1788027_+	helix-turn-helix transcriptional regulator	A0A1W6JNW5	Morganella_phage	8.9e-08	39.2
WP_110732282.1\|1788273_1789998_-	potassium/proton antiporter	NA	NA	NA	NA
WP_004264861.1\|1790400_1791069_-	ABC transporter permease	NA	NA	NA	NA
WP_109911499.1\|1791065_1792079_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	2.5e-33	38.2
WP_164528630.1\|1792082_1793543_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_164528631.1\|1793547_1794672_-	peroxidase-related enzyme	NA	NA	NA	NA
WP_004912542.1\|1794885_1795728_+	d-methionine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_109911502.1\|1795955_1796693_+	cyclase family protein	NA	NA	NA	NA
WP_004912534.1\|1796745_1797981_-	transporter	NA	NA	NA	NA
WP_109911503.1\|1798610_1800560_+	PTS mannitol transporter subunit IICBA	NA	NA	NA	NA
WP_164528632.1\|1800571_1801732_+	mannitol-1-phosphate 5-dehydrogenase	NA	NA	NA	NA
WP_004912528.1\|1801832_1802363_+	MltR family transcriptional regulator	NA	NA	NA	NA
WP_164528633.1\|1802459_1802879_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_164528634.1\|1802893_1804225_-	hypothetical protein	NA	NA	NA	NA
WP_164528635.1\|1804519_1805017_+	AAA family ATPase	NA	NA	NA	NA
WP_164528636.1\|1805291_1805699_-	hypothetical protein	NA	NA	NA	NA
WP_164528637.1\|1806366_1807704_-	hypothetical protein	NA	NA	NA	NA
WP_004912512.1\|1807726_1808155_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_164528638.1\|1808156_1808696_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_109911508.1\|1808711_1809803_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_110732018.1\|1809778_1811530_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_110732017.1\|1811553_1813164_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_164528639.1\|1813183_1816519_-	type VI secretion protein VasK	NA	NA	NA	NA
WP_164528640.1\|1816549_1817674_-	hypothetical protein	NA	NA	NA	NA
WP_164528641.1\|1817677_1817935_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_164528642.1\|1817979_1818957_-	hypothetical protein	NA	NA	NA	NA
WP_164528643.1\|1818977_1821551_-	hypothetical protein	NA	NA	NA	NA
WP_164528644.1\|1821563_1822250_-	hypothetical protein	NA	NA	NA	NA
WP_164528645.1\|1822375_1824772_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	6.6e-16	28.9
WP_164528646.1\|1824768_1827432_-	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	3.4e-98	30.1
WP_004912469.1\|1827599_1828091_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_164528647.1\|1828093_1829830_-	OmpA family protein	NA	NA	NA	NA
WP_164528648.1\|1829832_1830489_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_004912456.1\|1830485_1831823_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_109911521.1\|1831845_1833390_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_110732011.1\|1833409_1833907_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_004912445.1\|1835128_1835350_+	AlpA family transcriptional regulator	A0A2H4J8C8	uncultured_Caudovirales_phage	1.6e-09	50.0
WP_164529332.1\|1835346_1836183_+	hypothetical protein	NA	NA	NA	NA
WP_164528649.1\|1836205_1837225_+\|capsid	P2 family phage major capsid protein	F1BUM2	Cronobacter_phage	8.0e-80	46.8
WP_164528650.1\|1837221_1837755_+\|capsid	capsid protein	Q94MZ5	Haemophilus_virus	2.0e-29	51.2
WP_164528651.1\|1837824_1838337_+	ash family protein	A0A1W6JPK3	Morganella_phage	1.8e-43	64.0
WP_004912432.1\|1838339_1838567_+	hypothetical protein	NA	NA	NA	NA
WP_164528652.1\|1838566_1841287_+	DUF927 domain-containing protein	A0A1B0VP75	Pseudomonas_phage	7.4e-64	32.1
WP_164528653.1\|1841572_1841785_+	hypothetical protein	F1BUM8	Cronobacter_phage	1.6e-11	54.4
WP_004906882.1\|1842322_1842892_-	hypothetical protein	F1BUJ9	Cronobacter_phage	2.3e-36	50.9

DBSCAN-SWA_4

1988834 : 2001874

Klebsiella_phage(20.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_164528683.1\|1988834_1990010_-	recombinase	A0A2H4J1K3	uncultured_Caudovirales_phage	1.8e-30	29.7
WP_123382603.1\|1990011_1990227_-	hypothetical protein	NA	NA	NA	NA
WP_164528684.1\|1990524_1990893_-	hypothetical protein	NA	NA	NA	NA
WP_164528685.1\|1990921_1991077_-	hypothetical protein	NA	NA	NA	NA
WP_164528686.1\|1991750_1992206_-	hypothetical protein	A0A248SL53	Klebsiella_phage	1.7e-26	38.6
WP_141240686.1\|1992215_1992419_-	hypothetical protein	A0A1U9ZAG7	Proteus_phage	1.2e-06	48.1
WP_164528687.1\|1992432_1993209_-	hypothetical protein	A0A248SL66	Klebsiella_phage	1.8e-39	39.5
WP_164528688.1\|1993293_1994208_-	recombination-associated protein RdgC	S4TWL4	Salmonella_phage	6.3e-84	52.5
WP_164529334.1\|1994357_1994546_-	carbon storage regulator CsrA	A0A2I7RT00	Vibrio_phage	1.2e-13	70.6
WP_164528381.1\|1994653_1994920_+	hypothetical protein	NA	NA	NA	NA
WP_164528382.1\|1994897_1995116_-	hypothetical protein	NA	NA	NA	NA
WP_164528689.1\|1995145_1995355_-	hypothetical protein	NA	NA	NA	NA
WP_123382609.1\|1995510_1996182_-	helix-turn-helix domain-containing protein	K7PLZ5	Enterobacterial_phage	1.1e-61	56.2
WP_102140689.1\|1996254_1996449_+	hypothetical protein	K7PHB1	Enterobacterial_phage	3.8e-15	64.9
WP_164528690.1\|1996486_1996945_+	hypothetical protein	A0A1W6JP72	Morganella_phage	6.2e-48	64.0
WP_164528691.1\|1997227_1997407_+	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_164528692.1\|1997416_1998478_+	replication protein	A0A248SL49	Klebsiella_phage	2.9e-32	49.3
WP_164529335.1\|1998477_1998723_+	hypothetical protein	NA	NA	NA	NA
WP_164528693.1\|1998722_1999256_+	phage N-6-adenine-methyltransferase	Q4A1M4	Enterobacteria_phage	3.2e-64	64.7
WP_164528694.1\|1999252_1999600_+	hypothetical protein	NA	NA	NA	NA
WP_164528695.1\|1999596_1999983_+	hypothetical protein	A0A1W6JP80	Morganella_phage	4.4e-31	60.4
WP_164528696.1\|1999979_2000165_+	hypothetical protein	NA	NA	NA	NA
WP_164528697.1\|2000157_2000544_+	RusA family crossover junction endodeoxyribonuclease	K7PKN5	Enterobacterial_phage	1.8e-24	50.0
WP_164528698.1\|2000540_2001080_+	DUF968 domain-containing protein	A0A1W6JP62	Morganella_phage	1.1e-43	67.9
WP_164528699.1\|2001094_2001874_+	antitermination protein	F1C595	Cronobacter_phage	1.2e-67	48.4

DBSCAN-SWA_5

2006097 : 2034944

Cronobacter_phage(28.57%)

terminase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_164528705.1\|2006097_2006454_+	DUF882 domain-containing protein	A0A2D0VKR9	Proteus_phage	1.1e-36	63.2
WP_164528706.1\|2006438_2006828_+	hypothetical protein	NA	NA	NA	NA
WP_164528707.1\|2007552_2007735_+	hypothetical protein	O64364	Escherichia_phage	3.7e-12	67.2
WP_164528708.1\|2007934_2008123_+	hypothetical protein	A0A2I7RUD6	Vibrio_phage	1.2e-21	85.2
WP_164528709.1\|2008581_2009169_+	hypothetical protein	NA	NA	NA	NA
WP_164528710.1\|2009230_2010217_+\|terminase	terminase small subunit	C5IHM0	Burkholderia_virus	1.0e-31	35.9
WP_164528711.1\|2010194_2011502_+\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	3.8e-151	59.6
WP_164528712.1\|2011501_2012872_+	DUF4055 domain-containing protein	A0A1B0VMH0	Pseudomonas_phage	1.0e-122	50.5
WP_164528713.1\|2012868_2013990_+	hypothetical protein	I6PD76	Cronobacter_phage	2.0e-103	51.6
WP_164528714.1\|2014100_2014865_+	hypothetical protein	A0A1B0VMG1	Pseudomonas_phage	3.2e-65	57.6
WP_164528715.1\|2014877_2015831_+	Ig domain-containing protein	A0A1B0VMF8	Pseudomonas_phage	2.5e-128	73.2
WP_164529336.1\|2015833_2016121_+	hypothetical protein	NA	NA	NA	NA
WP_164528716.1\|2016162_2016642_+	hypothetical protein	G8C7P9	Escherichia_phage	1.0e-32	48.3
WP_164528717.1\|2016644_2016998_+	hypothetical protein	I6PD77	Cronobacter_phage	1.4e-18	42.1
WP_164528718.1\|2016999_2017581_+	hypothetical protein	G8C7Q1	Escherichia_phage	6.2e-53	57.0
WP_164528719.1\|2017577_2017979_+	hypothetical protein	NA	NA	NA	NA
WP_164528720.1\|2018025_2018685_+\|tail	phage tail protein	G8C7Q3	Escherichia_phage	2.5e-42	43.2
WP_164529337.1\|2018684_2018948_+	hypothetical protein	NA	NA	NA	NA
WP_164528721.1\|2018940_2019255_+	hypothetical protein	NA	NA	NA	NA
WP_154623732.1\|2019305_2019542_+	hypothetical protein	K7PMK8	Enterobacteria_phage	4.5e-10	41.7
WP_042847844.1\|2019802_2019982_+	hypothetical protein	NA	NA	NA	NA
WP_042848061.1\|2019994_2020474_+	type II toxin-antitoxin system death-on-curing family toxin	NA	NA	NA	NA
WP_164528722.1\|2020499_2021099_-	hypothetical protein	NA	NA	NA	NA
WP_164528723.1\|2021355_2021706_+	hypothetical protein	NA	NA	NA	NA
WP_164528724.1\|2022005_2022464_+	hypothetical protein	NA	NA	NA	NA
WP_164528725.1\|2022524_2026031_+\|tail	phage tail tape measure protein	E4WL33	Enterobacteria_phage	1.4e-147	39.2
WP_164528726.1\|2026075_2026417_+\|tail	phage tail protein	I6PBN7	Cronobacter_phage	1.1e-25	46.4
WP_164528727.1\|2026413_2027157_+\|tail	phage minor tail protein L	G8C7J7	Escherichia_phage	4.1e-81	53.8
WP_164528728.1\|2027153_2027864_+	peptidase P60	F1C573	Cronobacter_phage	6.8e-86	64.3
WP_164528729.1\|2027860_2028457_+\|tail	tail assembly protein	F1C572	Cronobacter_phage	3.2e-60	62.5
WP_164528730.1\|2028516_2032146_+	DUF1983 domain-containing protein	F1C571	Cronobacter_phage	3.5e-295	55.7
WP_164528731.1\|2032142_2033234_+	hypothetical protein	NA	NA	NA	NA
WP_164528732.1\|2033459_2034944_+	hypothetical protein	A0A1S6KUV1	Providencia_phage	4.4e-34	30.1

DBSCAN-SWA_6

2244326 : 2276260

Salmonella_phage(25.0%)

terminase,integrase,tail

attL 2244093:2244152|attR 2281840:2281934

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2244093:2244152	attL	NA	NA	NA	NA
WP_164528764.1\|2244326_2245532_+\|integrase	tyrosine-type recombinase/integrase	T1S9J3	Salmonella_phage	1.4e-136	61.5
WP_164528765.1\|2245537_2245723_-	hypothetical protein	NA	NA	NA	NA
WP_164528766.1\|2245715_2246369_-	DNA methyltransferase	A0A248SKY3	Klebsiella_phage	2.4e-77	64.7
WP_164528767.1\|2246375_2246555_-	hypothetical protein	NA	NA	NA	NA
WP_164528768.1\|2246707_2246911_-	hypothetical protein	NA	NA	NA	NA
WP_164528769.1\|2247099_2247654_-	hypothetical protein	NA	NA	NA	NA
WP_164528770.1\|2247731_2248265_-	hypothetical protein	A0A0S2MWC7	Cellulophaga_phage	1.8e-06	30.5
WP_043892873.1\|2248545_2248875_-	hypothetical protein	A0A1C9LVV9	Vibrio_phage	2.0e-24	40.2
WP_164528771.1\|2248943_2249246_-	hypothetical protein	NA	NA	NA	NA
WP_164528772.1\|2249285_2250386_-	recombinase RecT	H6WRX0	Salmonella_phage	1.5e-103	52.9
WP_164528773.1\|2250441_2252166_-	DNA breaking-rejoining protein	H6WRX1	Salmonella_phage	9.1e-100	51.2
WP_164528223.1\|2252137_2252389_-	hypothetical protein	NA	NA	NA	NA
WP_061063964.1\|2252632_2253232_-	helix-turn-helix transcriptional regulator	G9L6A6	Escherichia_phage	2.1e-27	35.0
WP_144141233.1\|2253362_2253596_+	hypothetical protein	NA	NA	NA	NA
WP_164529342.1\|2254187_2254964_+	hypothetical protein	T1SA92	Salmonella_phage	2.1e-19	45.0
WP_164528774.1\|2254932_2255406_+	replication protein	NA	NA	NA	NA
WP_164528775.1\|2255622_2256048_+	hypothetical protein	NA	NA	NA	NA
WP_117162268.1\|2256044_2256407_+	RusA family crossover junction endodeoxyribonuclease	K7P6W0	Enterobacteria_phage	6.4e-40	67.6
WP_164528776.1\|2256487_2257033_+	hypothetical protein	A0A1B1W2E3	Salmonella_phage	6.3e-39	41.8
WP_164528777.1\|2257035_2257308_+	hypothetical protein	NA	NA	NA	NA
WP_164528778.1\|2257327_2257588_+	hypothetical protein	NA	NA	NA	NA
WP_164528779.1\|2258021_2258651_+	hypothetical protein	NA	NA	NA	NA
WP_164528780.1\|2258704_2259271_+\|terminase	terminase small subunit	G9L6B7	Escherichia_phage	1.3e-39	48.8
WP_164528781.1\|2259267_2260749_+\|terminase	terminase	G9L6B8	Escherichia_phage	3.6e-238	78.9
WP_164528782.1\|2260935_2261151_+	hypothetical protein	NA	NA	NA	NA
WP_164528783.1\|2261166_2262819_+\|tail	phage tail protein	A0A193GYI4	Enterobacter_phage	4.2e-203	67.4
WP_164528784.1\|2262815_2263139_+	hypothetical protein	Q2A090	Sodalis_phage	1.9e-19	54.9
WP_164528785.1\|2263135_2263804_+	peptidase	G9L6C4	Escherichia_phage	2.7e-44	57.1
WP_109912478.1\|2263820_2264810_+	hypothetical protein	G9L6C5	Escherichia_phage	6.8e-116	62.3
WP_164529343.1\|2264874_2265306_+	hypothetical protein	A0A193GYT9	Enterobacter_phage	2.0e-27	51.4
WP_164528786.1\|2265314_2265656_+	hypothetical protein	NA	NA	NA	NA
WP_164528787.1\|2265708_2266020_+	hypothetical protein	A0A193GYH8	Enterobacter_phage	1.4e-14	44.9
WP_164528788.1\|2266019_2266625_+	hypothetical protein	A0A193GYT2	Enterobacter_phage	3.0e-66	60.2
WP_164528789.1\|2266624_2269081_+	hypothetical protein	Q858G3	Salmonella_phage	0.0e+00	68.3
WP_164528790.1\|2269064_2269559_+	hypothetical protein	G9L6D1	Escherichia_phage	3.9e-48	57.6
WP_164528791.1\|2269558_2270134_+	hypothetical protein	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	3.3e-46	60.3
WP_164528792.1\|2270144_2272889_+	hypothetical protein	A0A193GYI3	Enterobacter_phage	9.0e-102	40.6
WP_164528793.1\|2272891_2276260_+	hypothetical protein	A0A2I7R904	Vibrio_phage	1.6e-177	35.9
2281840:2281934	attR	NA	NA	NA	NA

DBSCAN-SWA_7

2516916 : 2554694

Salmonella_phage(43.33%)

head,plate,integrase,portal,tail,terminase,capsid

attL 2547345:2547358|attR 2553631:2553644

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_109912188.1\|2516916_2517330_+\|tail	phage major tail tube protein	A0A0M5M1I5	Salmonella_phage	1.2e-39	63.5
WP_164528849.1\|2517457_2518969_+	phosphoethanolamine transferase	NA	NA	NA	NA
WP_164529347.1\|2520726_2521521_+	ATP-binding protein	NA	NA	NA	NA
WP_164528850.1\|2521549_2521798_-	hypothetical protein	NA	NA	NA	NA
WP_164528851.1\|2521843_2522950_-	phage late control D family protein	B9A7A9	Serratia_phage	4.9e-131	63.1
WP_164528852.1\|2523048_2524275_+\|tail	phage tail protein	A0A0M4S6M1	Salmonella_phage	1.2e-149	65.9
WP_164528853.1\|2524287_2524800_+\|tail	phage major tail tube protein	A0A0M5M1I5	Salmonella_phage	1.6e-60	66.5
WP_164528854.1\|2524860_2525163_+\|tail	phage tail assembly protein	A0A0M4RCV2	Salmonella_phage	1.0e-11	44.6
WP_071585870.1\|2525195_2525312_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_164528855.1\|2525308_2528179_+\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	6.1e-125	36.4
WP_164528856.1\|2528183_2528615_+\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	2.5e-46	62.9
WP_164528857.1\|2528721_2529492_-	hypothetical protein	NA	NA	NA	NA
WP_164528858.1\|2529652_2530003_-\|tail	tail fiber assembly protein	B6SCW7	Bacteriophage	3.8e-13	48.0
WP_164528859.1\|2531627_2532239_-\|tail	phage tail protein I	F1BUP2	Erwinia_phage	1.6e-75	66.3
WP_164528860.1\|2532231_2533143_-\|plate	baseplate assembly protein	F1BUP3	Erwinia_phage	2.0e-106	66.7
WP_141173610.1\|2533145_2533487_-\|plate	baseplate assembly protein	F1BUP4	Erwinia_phage	6.7e-31	60.4
WP_164528861.1\|2533483_2534113_-\|plate	phage baseplate assembly protein V	A0A0F7LBP2	Escherichia_phage	1.1e-52	51.4
WP_164528862.1\|2534109_2534748_-	phage virion morphogenesis protein	A0A0M4RCU1	Salmonella_phage	3.0e-40	49.7
WP_004254663.1\|2534740_2535193_-\|tail	phage tail protein	A0A077K8R3	Ralstonia_phage	7.3e-17	33.6
WP_004254667.1\|2535192_2535363_-	hypothetical protein	NA	NA	NA	NA
WP_164528863.1\|2535359_2535881_-	lysozyme	H2DE61	Erwinia_phage	7.4e-13	48.4
WP_164528864.1\|2535883_2536420_-	lysozyme	H6WRZ4	Salmonella_phage	1.4e-62	62.7
WP_153673430.1\|2536421_2536709_-	potassium channel protein	A0A1V0E5R8	Salmonella_phage	3.5e-09	40.7
WP_164529348.1\|2536930_2537419_-\|head	head completion/stabilization protein	A0A0M4QWR7	Salmonella_phage	8.4e-35	51.9
WP_164528865.1\|2537521_2538217_-\|terminase	terminase	A0A0M4R523	Salmonella_phage	3.0e-46	48.7
WP_141173620.1\|2538237_2539287_-\|capsid	phage major capsid protein, P2 family	A0A0M3ULA3	Salmonella_phage	8.0e-99	52.9
WP_164528866.1\|2539333_2540155_-\|capsid	GPO family capsid scaffolding protein	A0A1J0I2E9	Salmonella_phage	2.3e-37	36.7
WP_164528867.1\|2540317_2542042_+	oxidoreductase	A0A0M4S6K7	Salmonella_phage	1.3e-199	61.0
WP_164528868.1\|2542044_2543100_+\|portal	phage portal protein	A0A0M5M1H6	Salmonella_phage	1.6e-107	59.0
WP_164528869.1\|2543586_2544414_+	DUF4393 domain-containing protein	A0A0M4RU42	Bacillus_phage	3.8e-19	35.3
WP_164528870.1\|2544512_2545778_+	hypothetical protein	NA	NA	NA	NA
WP_164528871.1\|2546611_2549272_-	bifunctional DNA primase/helicase	A0A077K8T2	Ralstonia_phage	3.3e-250	49.3
2547345:2547358	attL	NA	NA	NA	NA
WP_164528872.1\|2549349_2549571_-	TraR/DksA family transcriptional regulator	A0A0M3LS11	Mannheimia_phage	8.5e-11	49.3
WP_004254744.1\|2549563_2549785_-	DUF2732 family protein	NA	NA	NA	NA
WP_164528873.1\|2550148_2550634_+	hypothetical protein	NA	NA	NA	NA
WP_164528874.1\|2550630_2550957_-	hypothetical protein	NA	NA	NA	NA
WP_164528875.1\|2550946_2551144_-	hypothetical protein	NA	NA	NA	NA
WP_076913935.1\|2551140_2551407_-	hypothetical protein	Q1JS60	Enterobacteria_phage	4.9e-21	53.8
WP_164528876.1\|2551508_2551808_+	helix-turn-helix transcriptional regulator	Q1JS29	Enterobacteria_phage	3.9e-35	70.7
WP_164528877.1\|2551871_2552858_+\|integrase	tyrosine-type recombinase/integrase	Q83VS6	Escherichia_phage	1.2e-107	57.2
WP_109912186.1\|2553119_2554694_-	alkyl hydroperoxide reductase subunit F	G3MA85	Bacillus_virus	1.2e-37	31.1
2553631:2553644	attR	NA	NA	NA	NA

DBSCAN-SWA_8

2802507 : 2810000

Tupanvirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_109911252.1\|2802507_2804493_-	bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA	A0A2K9KZK0	Tupanvirus	5.7e-21	26.9
WP_164528917.1\|2804492_2805485_-	undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase	A8CG95	Salmonella_phage	6.7e-39	33.4
WP_109911251.1\|2805484_2806630_-	UDP-4-amino-4-deoxy-L-arabinose aminotransferase	A0A2K9L470	Tupanvirus	1.7e-33	26.8
WP_164528918.1\|2806749_2807526_-	ATP-binding cassette domain-containing protein	A0A2I4R674	Erysipelothrix_phage	6.5e-05	28.9
WP_164528919.1\|2807528_2808530_-	vitamin B12 ABC transporter permease BtuC	A0A2H4IY97	uncultured_Caudovirales_phage	4.0e-15	24.6
WP_109911248.1\|2808651_2809647_+	hypothetical protein	NA	NA	NA	NA
WP_004263721.1\|2809703_2810000_-	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	3.2e-13	40.0

DBSCAN-SWA_9

3099590 : 3194009

102

Acinetobacter_phage(27.78%)

head,plate,holin,tail,lysis,terminase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_164528975.1\|3099590_3100991_+\|tRNA	asparagine--tRNA ligase	A0A2K9V902	Bandra_megavirus	5.1e-77	36.5
WP_110732273.1\|3101562_3102669_+	porin	Q1MVN1	Enterobacteria_phage	2.2e-99	51.5
WP_164528976.1\|3103098_3104289_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
WP_164528977.1\|3104390_3112961_-	RTX toxin	NA	NA	NA	NA
WP_164528978.1\|3113120_3113768_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_004256173.1\|3113807_3114356_-	YcbK family protein	A0A0K1LKR7	Rhodobacter_phage	5.4e-06	37.0
WP_164528979.1\|3114736_3116479_-	L,D-transpeptidase	NA	NA	NA	NA
WP_164528980.1\|3116900_3121343_-	chromosome partition protein MukB	NA	NA	NA	NA
WP_004909591.1\|3121342_3122068_-	chromosome partition protein MukE	NA	NA	NA	NA
WP_109911049.1\|3122048_3123374_-	chromosome partition protein MukF	NA	NA	NA	NA
WP_004909582.1\|3123370_3124159_-\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA
WP_164528981.1\|3124514_3125342_+	envelope biogenesis factor ElyC	NA	NA	NA	NA
WP_164528982.1\|3125429_3126176_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA
WP_004256203.1\|3126181_3126361_-	hypothetical protein	NA	NA	NA	NA
WP_004909576.1\|3126498_3126714_-	cold shock domain-containing protein	NA	NA	NA	NA
WP_004909572.1\|3127116_3128115_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
WP_004909568.1\|3128111_3129857_-	lipid A ABC transporter ATP-binding protein/permease MsbA	W8CYL7	Bacillus_phage	7.4e-57	30.0
WP_164528983.1\|3132461_3132716_-	hypothetical protein	NA	NA	NA	NA
WP_004256221.1\|3132750_3133038_-	integration host factor subunit beta	A7KV42	Bacillus_phage	1.1e-10	40.0
WP_004909559.1\|3133094_3134768_-	30S ribosomal protein S1	NA	NA	NA	NA
WP_004909557.1\|3134941_3135625_-	(d)CMP kinase	NA	NA	NA	NA
WP_164528984.1\|3135812_3137090_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_164528985.1\|3137211_3138303_-	3-phosphoserine/phosphohydroxythreonine transaminase	M1Q1P2	Streptococcus_phage	1.5e-84	46.0
WP_109911043.1\|3138591_3140226_-	alpha-D-glucose phosphate-specific phosphoglucomutase	NA	NA	NA	NA
WP_109911042.1\|3140282_3140828_-	replication initiation negative regulator SeqA	NA	NA	NA	NA
WP_109911041.1\|3141152_3141935_+	esterase	NA	NA	NA	NA
WP_164528986.1\|3142177_3144283_+	type I secretion system permease/ATPase	W8CYL7	Bacillus_phage	5.1e-36	26.9
WP_164528987.1\|3144279_3145608_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
WP_117162086.1\|3147740_3147998_+	hypothetical protein	NA	NA	NA	NA
WP_164528988.1\|3147987_3148200_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_164528989.1\|3148546_3149164_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	3.3e-28	38.5
WP_164529361.1\|3149163_3149922_-\|tail	tail fiber protein	Q9MCR6	Enterobacteria_phage	1.7e-34	52.5
WP_164528990.1\|3150706_3151339_-	DUF2612 domain-containing protein	K4HYS2	Acinetobacter_phage	8.9e-45	48.1
WP_164528991.1\|3151338_3152529_-	hypothetical protein	A0A1X9SFA4	Acinetobacter_phage	8.2e-84	44.7
WP_164528992.1\|3152525_3152879_-	hypothetical protein	I2GUF7	Acinetobacter_phage	7.2e-28	50.4
WP_164528993.1\|3152882_3153569_-\|plate	phage baseplate protein	A0A2R3UAK1	Myoviridae_environmental_samples	1.1e-32	43.9
WP_164528994.1\|3153555_3154437_-	hypothetical protein	K4I0K5	Acinetobacter_phage	1.2e-50	40.1
WP_164528995.1\|3155560_3156463_-	hypothetical protein	A0A0R6PI23	Moraxella_phage	4.0e-22	28.4
WP_164528996.1\|3156425_3156620_-	hypothetical protein	NA	NA	NA	NA
WP_164528997.1\|3156878_3157142_-	hypothetical protein	NA	NA	NA	NA
WP_164528998.1\|3157181_3157649_-	hypothetical protein	NA	NA	NA	NA
WP_164528999.1\|3157709_3160103_-	hypothetical protein	A0A1W6JPF2	Morganella_phage	6.6e-157	43.6
WP_164529000.1\|3160298_3160709_-	hypothetical protein	A0A068CGG2	Acinetobacter_phage	3.0e-17	39.3
WP_051473540.1\|3160708_3161155_-	hypothetical protein	E2GLU0	Acinetobacter_phage	7.2e-33	42.9
WP_164529001.1\|3161168_3162629_-	DUF3383 domain-containing protein	H9C0W5	Aeromonas_phage	1.5e-66	34.6
WP_164529002.1\|3162638_3163127_-	hypothetical protein	NA	NA	NA	NA
WP_164529362.1\|3163111_3163492_-	hypothetical protein	A0A068CBI2	Acinetobacter_phage	1.0e-19	43.3
WP_164529003.1\|3163481_3164048_-	hypothetical protein	A0A190XCA2	Acinetobacter_phage	2.0e-16	31.5
WP_164529363.1\|3164040_3164499_-	DUF4054 domain-containing protein	K4HYQ8	Acinetobacter_phage	1.8e-15	43.7
WP_164529004.1\|3164525_3164843_-	hypothetical protein	A0A1X9SFA9	Acinetobacter_phage	1.6e-07	33.0
WP_164529005.1\|3164902_3165901_-	DUF2184 domain-containing protein	I2GUD7	Acinetobacter_phage	1.8e-84	51.6
WP_164529364.1\|3165910_3166375_-	hypothetical protein	A0A219YBF2	Aeromonas_phage	3.7e-16	45.2
WP_164529006.1\|3166408_3167623_-	DUF2213 domain-containing protein	K4I393	Acinetobacter_phage	2.0e-53	55.9
WP_164529007.1\|3167635_3168427_-\|head	phage head morphogenesis protein	A0A0D4DCM6	Acinetobacter_phage	5.9e-54	40.5
WP_164529008.1\|3168398_3169931_-	DUF1073 domain-containing protein	E2GLW8	Acinetobacter_phage	7.5e-114	50.1
WP_164529009.1\|3169930_3171280_-\|terminase	PBSX family phage terminase large subunit	A0A220NQL3	Acinetobacter_phage	6.5e-170	64.6
WP_164529010.1\|3171272_3171797_-\|terminase	terminase small subunit	A0A1W6JNT5	Morganella_phage	1.3e-62	73.9
WP_164529011.1\|3171940_3172627_-	Rha family transcriptional regulator	A0A192Y918	Salmonella_phage	7.5e-98	77.2
WP_164529012.1\|3173351_3173804_-\|lysis	lysis protein	I6WLR5	Burkholderia_virus	7.3e-09	34.6
WP_164529013.1\|3173800_3174217_-	structural protein	A0A0A1IX72	Pseudomonas_phage	3.0e-33	53.0
WP_094963034.1\|3174209_3174539_-\|holin	phage holin, lambda family	A0A1P8DTE4	Proteus_phage	1.8e-25	53.2
WP_164529014.1\|3174912_3175695_-	antitermination protein	Q76H66	Enterobacteria_phage	3.2e-68	52.7
WP_164529015.1\|3175691_3175895_-	hypothetical protein	NA	NA	NA	NA
WP_164529016.1\|3175894_3176353_-	hypothetical protein	C6ZR60	Salmonella_phage	1.5e-65	77.5
WP_164529017.1\|3176691_3176835_-	hypothetical protein	NA	NA	NA	NA
WP_164529018.1\|3176834_3177005_-	hypothetical protein	NA	NA	NA	NA
WP_164529019.1\|3177015_3177462_-	DUF1367 family protein	A0A096XEN2	Escherichia_phage	1.1e-54	67.1
WP_164529020.1\|3177471_3177663_-	hypothetical protein	NA	NA	NA	NA
WP_164529021.1\|3177810_3178029_-	DUF551 domain-containing protein	NA	NA	NA	NA
WP_164529022.1\|3178015_3178285_-	hypothetical protein	NA	NA	NA	NA
WP_164529023.1\|3178532_3178823_-	hypothetical protein	A0A1X9Y877	Proteus_phage	1.2e-12	42.7
WP_164529024.1\|3178854_3179079_-	hypothetical protein	NA	NA	NA	NA
WP_164529025.1\|3179094_3179769_-	DNA replication protein	A0A1P8DTF3	Proteus_phage	4.8e-65	55.6
WP_164529026.1\|3179765_3180707_-	replication protein 15	A0A1P8DTG2	Proteus_phage	3.7e-71	55.1
WP_164529027.1\|3180720_3181128_-	hypothetical protein	G8C7U4	Escherichia_phage	1.2e-31	55.7
WP_164529028.1\|3181154_3181481_-	hypothetical protein	A0A1W6JNY4	Morganella_phage	8.3e-39	74.1
WP_164529029.1\|3181586_3181814_-	helix-turn-helix domain-containing protein	G9L677	Escherichia_phage	5.4e-21	64.0
WP_164529030.1\|3181893_3182331_+	helix-turn-helix domain-containing protein	G9L676	Escherichia_phage	1.9e-25	76.3
WP_164529031.1\|3182373_3182697_+	hypothetical protein	NA	NA	NA	NA
WP_164529032.1\|3182700_3183207_+	hypothetical protein	NA	NA	NA	NA
WP_136134472.1\|3183259_3183466_-	hypothetical protein	K7P7I0	Enterobacteria_phage	6.5e-05	46.7
WP_164529033.1\|3183976_3184180_+	hypothetical protein	NA	NA	NA	NA
WP_154601193.1\|3184205_3184709_-	hypothetical protein	NA	NA	NA	NA
WP_164529034.1\|3185203_3185794_+	DUF5420 family protein	A0A2I7QRH1	Vibrio_phage	2.0e-14	34.3
WP_164529035.1\|3185823_3186009_+	hypothetical protein	NA	NA	NA	NA
WP_164529036.1\|3186010_3186253_+	hypothetical protein	A0A0G2SS78	Proteus_phage	3.5e-10	73.3
WP_164529037.1\|3186514_3187411_+	cell envelope biogenesis protein TolA	K7P6J9	Enterobacteria_phage	2.1e-39	75.2
WP_140171620.1\|3187428_3187866_+	hypothetical protein	NA	NA	NA	NA
WP_164529038.1\|3187933_3188089_+	hypothetical protein	NA	NA	NA	NA
WP_048606419.1\|3188085_3188352_+	hypothetical protein	NA	NA	NA	NA
WP_164529039.1\|3188493_3188871_+	hypothetical protein	NA	NA	NA	NA
WP_164529040.1\|3188860_3189535_+	exodeoxyribonuclease X	A0A1W5PTR6	Pseudoalteromonas_phage	3.3e-21	34.2
WP_164529041.1\|3189537_3190248_+	recombinase	K7PKU3	Enterobacteria_phage	2.9e-76	58.0
WP_164529042.1\|3190248_3190758_+	single-stranded DNA-binding protein	A0A1B0VAF5	Salmonella_phage	2.4e-56	63.9
WP_096864293.1\|3190793_3191081_+	hypothetical protein	NA	NA	NA	NA
WP_164529043.1\|3191375_3191909_+	hypothetical protein	A0A2I7R6M5	Vibrio_phage	3.2e-11	27.6
WP_164529044.1\|3191908_3192130_+	hypothetical protein	A0A1P8DTI8	Proteus_phage	1.8e-13	51.2
WP_164529045.1\|3192122_3192368_+	hypothetical protein	NA	NA	NA	NA
WP_164529046.1\|3192526_3193081_+	hypothetical protein	NA	NA	NA	NA
WP_164529047.1\|3193080_3193296_+	hypothetical protein	NA	NA	NA	NA
WP_164529048.1\|3193255_3193474_+	hypothetical protein	NA	NA	NA	NA
WP_164529049.1\|3193463_3194009_+	phage N-6-adenine-methyltransferase	A0A1W6JP96	Morganella_phage	2.4e-59	60.9

DBSCAN-SWA_10

3237982 : 3305240

Planktothrix_phage(13.33%)

protease,lysis,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_109911024.1\|3237982_3240265_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	2.8e-173	43.5
WP_004909410.1\|3240296_3240617_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.8e-15	50.0
WP_004909408.1\|3241007_3241253_+	cold shock domain-containing protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.7e-16	59.7
WP_164529058.1\|3241330_3242278_-	DUF1177 domain-containing protein	NA	NA	NA	NA
WP_109911022.1\|3242515_3243268_-	IclR family transcriptional regulator	NA	NA	NA	NA
WP_109911021.1\|3243264_3244098_-	hydrolase	NA	NA	NA	NA
WP_004909397.1\|3244108_3245455_-	cytosine permease	NA	NA	NA	NA
WP_109911020.1\|3245878_3247822_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	2.6e-39	41.3
WP_109911019.1\|3247824_3248931_-	macrolide transporter subunit MacA	NA	NA	NA	NA
WP_109911018.1\|3249141_3250806_-	DUF2813 domain-containing protein	NA	NA	NA	NA
WP_004909390.1\|3251208_3252108_+	lysine exporter LysO family protein	NA	NA	NA	NA
WP_004909389.1\|3252159_3253641_+	DUF2867 domain-containing protein	NA	NA	NA	NA
WP_004256404.1\|3253739_3254468_+	arginine ABC transporter ATP-binding protein ArtP	G9BWD6	Planktothrix_phage	9.0e-33	38.6
WP_004256405.1\|3254486_3255230_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004909379.1\|3255242_3255983_+	arginine ABC transporter permease ArtQ	NA	NA	NA	NA
WP_004909376.1\|3255979_3256648_+	arginine ABC transporter permease ArtM	NA	NA	NA	NA
WP_164529059.1\|3256790_3257948_+	hypothetical protein	NA	NA	NA	NA
WP_164529060.1\|3258018_3259152_-	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	NA	NA	NA	NA
WP_109911013.1\|3259161_3259677_-	YbjN domain-containing protein	NA	NA	NA	NA
WP_109911012.1\|3259816_3260143_-	YbjC family protein	NA	NA	NA	NA
WP_004909359.1\|3260303_3260567_+	GrxA family glutaredoxin	A0A2I7SAE2	Vibrio_phage	1.2e-27	73.1
WP_004909357.1\|3260814_3261243_-	YjbQ family protein	NA	NA	NA	NA
WP_164529061.1\|3261443_3262052_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA
WP_004909352.1\|3262903_3264220_+	HAAAP family serine/threonine permease	NA	NA	NA	NA
WP_109911009.1\|3264295_3265663_+	L-serine ammonia-lyase	NA	NA	NA	NA
WP_109911008.1\|3265743_3266949_-	serine-type D-Ala-D-Ala carboxypeptidase	B6DZZ7	Stx2-converting_phage	2.0e-98	47.1
WP_109911007.1\|3267166_3267790_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_109911006.1\|3267790_3268618_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_109911005.1\|3269067_3269967_+	ATP phosphoribosyltransferase	A0A0F7Q4B0	Cellulophaga_phage	2.5e-08	84.2
WP_109911004.1\|3269973_3271290_+	histidinol dehydrogenase	NA	NA	NA	NA
WP_004909336.1\|3271293_3272364_+	histidinol-phosphate transaminase	NA	NA	NA	NA
WP_004909334.1\|3272377_3273445_+	bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB	NA	NA	NA	NA
WP_004909333.1\|3273444_3274038_+	imidazole glycerol phosphate synthase subunit HisH	NA	NA	NA	NA
WP_109911003.1\|3274043_3274781_+	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase	NA	NA	NA	NA
WP_004909328.1\|3274762_3275539_+	imidazole glycerol phosphate synthase subunit HisF	NA	NA	NA	NA
WP_004909325.1\|3275532_3276144_+	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA	NA	NA	NA
WP_109911324.1\|3276404_3276881_+\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
WP_109911002.1\|3276935_3277577_-	CatB-related O-acetyltransferase	M1HKK6	Paramecium_bursaria_Chlorella_virus	1.2e-17	40.3
WP_164529062.1\|3277910_3281144_+	hypothetical protein	NA	NA	NA	NA
WP_164529063.1\|3281213_3282410_-	multidrug effflux MFS transporter	S4TR35	Salmonella_phage	2.4e-30	32.5
WP_164529064.1\|3282546_3283953_-	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	2.5e-39	28.5
WP_004909274.1\|3284195_3285779_+	TerC family protein	A0A0R6PEZ3	Moraxella_phage	6.3e-39	44.4
WP_123382133.1\|3285961_3286342_+	hypothetical protein	NA	NA	NA	NA
WP_123382134.1\|3286541_3288380_-	outer membrane assembly protein AsmA	NA	NA	NA	NA
WP_004909269.1\|3288507_3289089_-	dCTP deaminase	I4AZP2	Saccharomonospora_phage	1.6e-29	40.5
WP_004256495.1\|3289127_3289772_-	uridine kinase	A0A1V0SAA3	Catovirus	4.8e-38	42.2
WP_164529065.1\|3289950_3290907_-\|protease	zinc metalloprotease HtpX	NA	NA	NA	NA
WP_004909264.1\|3290993_3291554_-	LemA family protein	NA	NA	NA	NA
WP_004256506.1\|3291761_3292874_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_164529066.1\|3293136_3295164_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	6.1e-55	27.0
WP_164529067.1\|3295307_3295775_+	CidA/LrgA family protein	NA	NA	NA	NA
WP_164529068.1\|3295774_3296470_+\|lysis	CidB/LrgB family autolysis modulator	NA	NA	NA	NA
WP_110731803.1\|3296674_3297562_+	cytidine deaminase	NA	NA	NA	NA
WP_109910993.1\|3297719_3298367_-	hypothetical protein	NA	NA	NA	NA
WP_109910992.1\|3298353_3299022_-	hypothetical protein	NA	NA	NA	NA
WP_109910991.1\|3299177_3300563_-\|protease	serine protease	NA	NA	NA	NA
WP_164529069.1\|3300571_3301270_-	hypothetical protein	NA	NA	NA	NA
WP_004909242.1\|3301329_3301953_-	hypothetical protein	NA	NA	NA	NA
WP_109910989.1\|3302378_3304076_+	NAD-dependent malic enzyme	NA	NA	NA	NA
WP_110731802.1\|3304358_3305240_+\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA

DBSCAN-SWA_11

3463469 : 3474152

Mycobacterium_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_109913210.1\|3463469_3464681_+	D-alanyl-D-alanine carboxypeptidase DacA	B6DZZ7	Stx2-converting_phage	1.0e-105	49.3
WP_004908910.1\|3464832_3465096_+	YbeD family protein	NA	NA	NA	NA
WP_109913211.1\|3465406_3466051_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA
WP_004908904.1\|3466174_3467140_+	lipoyl synthase	NA	NA	NA	NA
WP_004257099.1\|3467273_3467483_-	transcription antiterminator/RNA stability regulator CspE	A0A1W6JNX5	Morganella_phage	3.5e-22	78.1
WP_004908893.1\|3467699_3468158_-	methylated-DNA--[protein]-cysteine S-methyltransferase	A0A2K9L300	Tupanvirus	3.2e-20	44.0
WP_109913212.1\|3468446_3468674_+	glutaredoxin-like protein NrdH	V5UN81	Mycobacterium_phage	8.1e-17	56.2
WP_109913213.1\|3468682_3469096_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A142F1R4	Bacillus_phage	1.6e-10	34.7
WP_109913214.1\|3469107_3471240_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	3.3e-208	51.6
WP_004908884.1\|3471252_3472224_+	class 1b ribonucleoside-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	7.8e-133	71.6
WP_004908883.1\|3472952_3474152_+	glycine betaine/L-proline ABC transporter ATP-binding protein ProV	G3M9Y6	Bacillus_virus	2.6e-29	38.5

DBSCAN-SWA_12

3688643 : 3750135

Cronobacter_phage(61.76%)

head,integrase,holin,portal,tail,protease,terminase,capsid

attL 3687872:3687891|attR 3717384:3717403

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3687872:3687891	attL	NA	NA	NA	NA
WP_164529133.1\|3688643_3689675_-\|integrase	tyrosine-type recombinase/integrase	F1BUS9	Erwinia_phage	8.0e-120	62.2
WP_164529134.1\|3689691_3690282_-	phage repressor protein	F1BUN8	Cronobacter_phage	4.3e-25	33.9
WP_164529135.1\|3690426_3690651_+	regulator	NA	NA	NA	NA
WP_164529136.1\|3690680_3691190_+	hypothetical protein	A0A1S6L008	Salmonella_phage	6.9e-40	50.3
WP_164529137.1\|3691192_3691348_+	hypothetical protein	NA	NA	NA	NA
WP_164529138.1\|3691357_3691708_+	DUF5347 domain-containing protein	A0A1S6L019	Salmonella_phage	2.8e-16	42.7
WP_164529139.1\|3691779_3691986_+	hypothetical protein	NA	NA	NA	NA
WP_164529369.1\|3692198_3694397_+	replication endonuclease	F1BUM9	Cronobacter_phage	1.3e-180	53.6
WP_164529140.1\|3694356_3694728_+	hypothetical protein	H9C172	Pectobacterium_phage	3.5e-33	61.3
WP_096864691.1\|3694848_3695070_+	hypothetical protein	NA	NA	NA	NA
WP_141395919.1\|3695055_3695373_-	transcriptional regulator	F1BUM8	Cronobacter_phage	4.5e-29	56.7
WP_164529141.1\|3695372_3696404_-\|portal	phage portal protein	F1BUM7	Cronobacter_phage	1.7e-122	62.3
WP_164529142.1\|3696403_3698191_-\|terminase	terminase	F1BUM5	Cronobacter_phage	1.1e-222	64.2
WP_164455387.1\|3698352_3699135_+\|capsid	phage capsid protein	F1BUM4	Cronobacter_phage	1.6e-43	42.9
WP_048608874.1\|3699156_3700185_+\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	7.0e-140	73.7
WP_164529143.1\|3700188_3700896_+\|terminase	terminase	F1BUM0	Cronobacter_phage	6.8e-62	53.4
WP_164529144.1\|3700994_3701405_+	hypothetical protein	NA	NA	NA	NA
WP_164529145.1\|3701383_3701836_+\|head	head completion/stabilization protein	F1BUL8	Cronobacter_phage	3.5e-35	50.0
WP_164529146.1\|3701832_3702312_+\|tail	phage tail protein	NA	NA	NA	NA
WP_164529147.1\|3702301_3703000_+	hypothetical protein	F1BUL6	Cronobacter_phage	1.4e-70	59.9
WP_164529148.1\|3703012_3704131_+	DUF2586 domain-containing protein	F1BUL5	Cronobacter_phage	4.9e-131	63.2
WP_164529149.1\|3704130_3704586_+	DUF2597 family protein	F1BUL4	Cronobacter_phage	7.0e-52	64.2
WP_048608858.1\|3704602_3704896_+\|holin	holin	Q6K1I2	Salmonella_virus	2.4e-13	48.8
WP_164529150.1\|3704892_3705303_+	structural protein	A0A0A0RQM4	Escherichia_phage	3.2e-27	46.9
WP_164529151.1\|3705299_3705677_+	hypothetical protein	F1BUL2	Cronobacter_phage	6.3e-22	50.0
WP_096864679.1\|3705778_3706042_+	hypothetical protein	A5X9I7	Aeromonas_virus	1.8e-20	61.9
WP_164529152.1\|3706229_3708329_+\|tail	phage tail tape measure protein	F1BUK9	Cronobacter_phage	9.5e-160	45.3
WP_164529153.1\|3708321_3708657_+	DUF2590 family protein	F1BUK8	Cronobacter_phage	2.4e-33	67.3
WP_164529154.1\|3708646_3709837_+	hypothetical protein	F1BUK6	Cronobacter_phage	1.7e-145	62.8
WP_164529155.1\|3709823_3710441_+	hypothetical protein	F1BUK5	Cronobacter_phage	3.1e-66	63.0
WP_164529156.1\|3710453_3712484_+\|tail	phage tail protein	F1BUK3	Cronobacter_phage	1.0e-89	54.9
WP_164529157.1\|3712483_3713098_+\|tail	tail fiber assembly protein	G4KKN5	Yersinia_phage	3.2e-23	33.7
WP_164529370.1\|3713142_3713856_+	hypothetical protein	F1BUK1	Cronobacter_phage	1.9e-35	37.1
WP_164529158.1\|3713800_3714367_+	hypothetical protein	F1BUJ9	Cronobacter_phage	5.9e-40	52.8
WP_164529159.1\|3714369_3716046_+	hypothetical protein	F1BUJ7	Cronobacter_phage	1.4e-137	49.7
WP_164529160.1\|3716621_3717344_-	hypothetical protein	NA	NA	NA	NA
WP_109911818.1\|3718165_3718762_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
3717384:3717403	attR	NA	NA	NA	NA
WP_164529161.1\|3718985_3721007_+	NADPH-dependent 2,4-dienoyl-CoA reductase	NA	NA	NA	NA
WP_004908393.1\|3721116_3722370_-	serine/threonine transporter SstT	NA	NA	NA	NA
WP_109911701.1\|3722633_3723593_-	TerC family protein	I7HPH5	Enterobacteria_phage	2.9e-39	38.3
WP_004908389.1\|3724206_3724875_+	DedA family protein	NA	NA	NA	NA
WP_109911700.1\|3725112_3725418_+	DUF883 domain-containing protein	NA	NA	NA	NA
WP_004908385.1\|3725424_3725832_+	hypothetical protein	NA	NA	NA	NA
WP_004908381.1\|3725818_3726118_+	hypothetical protein	NA	NA	NA	NA
WP_004908378.1\|3726355_3726751_+	DoxX family protein	NA	NA	NA	NA
WP_117162551.1\|3727142_3728036_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_109911697.1\|3728159_3728867_+	pirin family protein	NA	NA	NA	NA
WP_164529162.1\|3729002_3730973_+	BglG family transcription antiterminator	NA	NA	NA	NA
WP_004908366.1\|3731455_3731794_+	PRD domain-containing protein	NA	NA	NA	NA
WP_004908363.1\|3731826_3732192_+	hypothetical protein	NA	NA	NA	NA
WP_004258180.1\|3732191_3732488_+	DUF4312 family protein	NA	NA	NA	NA
WP_004258184.1\|3732514_3733306_+	DUF4311 domain-containing protein	NA	NA	NA	NA
WP_004908356.1\|3733308_3733959_+	DUF4310 family protein	NA	NA	NA	NA
WP_109911695.1\|3734397_3735537_+	amidohydrolase/deacetylase family metallohydrolase	NA	NA	NA	NA
WP_004908346.1\|3735520_3736633_+	DgaE family pyridoxal phosphate-dependent ammonia lyase	NA	NA	NA	NA
WP_109911693.1\|3736634_3737375_+	KDGP aldolase family protein	NA	NA	NA	NA
WP_123382269.1\|3737512_3738589_-	4Fe-4S binding protein	NA	NA	NA	NA
WP_115167905.1\|3739496_3740369_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	7.4e-50	42.3
WP_109911690.1\|3740430_3742128_+	penicillin-binding protein activator LpoA	NA	NA	NA	NA
WP_004908329.1\|3742167_3742548_+	YraN family protein	NA	NA	NA	NA
WP_004908326.1\|3742662_3743253_+	DnaA initiator-associating protein DiaA	A0A067XQR2	Caulobacter_phage	1.9e-09	30.8
WP_109911689.1\|3743262_3743838_+	divisome-associated lipoprotein YraP	NA	NA	NA	NA
WP_004908320.1\|3743901_3744624_-	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA
WP_164529163.1\|3744632_3745283_-	isoprenoid biosynthesis glyoxalase ElbB	NA	NA	NA	NA
WP_004908312.1\|3745515_3747861_-	aerobic respiration two-component sensor histidine kinase ArcB	A0A1V0SGX0	Hokovirus	1.5e-44	31.4
WP_164529164.1\|3748161_3749568_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_042851523.1\|3749640_3750135_-\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	2.6e-28	41.8

DBSCAN-SWA_13

4049212 : 4066262

Escherichia_phage(55.56%)

integrase,transposase

attL 4049150:4049209|attR 4062160:4062816

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4049150:4049209	attL	NA	NA	NA	NA
WP_001067855.1\|4049212_4049917_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_004163135.1\|4049807_4050767_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.7e-47	40.5
WP_063840321.1\|4051058_4051613_+	fluoroquinolone-acetylating aminoglycoside 6'-N-acetyltransferase AAC(6')-Ib-cr5	NA	NA	NA	NA
WP_001334766.1\|4051743_4052574_+	oxacillin-hydrolyzing class D beta-lactamase OXA-1	NA	NA	NA	NA
WP_000186237.1\|4052711_4053344_+	type B-3 chloramphenicol O-acetyltransferase CatB3	A0A2R8FE91	Brazilian_cedratvirus	4.1e-26	41.2
WP_164529211.1\|4053428_4053881_+	NAD(+)--rifampin ADP-ribosyltransferase	NA	NA	NA	NA
WP_000679427.1\|4054103_4054451_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259031.1\|4054444_4055284_+	sulfonamide-resistant dihydropteroate synthase Sul1	NA	NA	NA	NA
WP_000376623.1\|4055411_4055912_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001163403.1\|4056087_4056870_-	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	2.5e-33	35.0
WP_001324342.1\|4056859_4058383_-\|transposase	IS21-like element IS1326 family transposase	A0A2L1IVA1	Escherichia_phage	1.2e-15	24.2
WP_000287615.1\|4058505_4060050_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.0e-38	34.6
WP_000344784.1\|4060100_4060961_-	AAA family ATPase	NA	NA	NA	NA
WP_001067855.1\|4061451_4062156_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_140173007.1\|4062191_4062503_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000155092.1\|4062692_4063577_-	Mph(E) family macrolide 2'-phosphotransferase	NA	NA	NA	NA
4062160:4062816	attR	NA	NA	NA	NA
WP_000052512.1\|4063632_4065108_-	ABC-F type ribosomal protection protein Msr(E)	A0A1B0RXA0	Streptococcus_phage	2.3e-160	59.0
WP_001067855.1\|4065557_4066262_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0

DBSCAN-SWA_14

4069766 : 4113602

Salmonella_phage(38.46%)

integrase,transposase

attL 4082346:4082405|attR 4109765:4109966

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000050481.1\|4069766_4071308_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_000259031.1\|4071712_4072552_-	sulfonamide-resistant dihydropteroate synthase Sul1	NA	NA	NA	NA
WP_000679427.1\|4072545_4072893_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_001749986.1\|4073115_4073568_-	NAD(+)--rifampin ADP-ribosyltransferase Arr-3	NA	NA	NA	NA
WP_004201164.1\|4074308_4075121_+	subclass B1 metallo-beta-lactamase NDM-1	NA	NA	NA	NA
WP_004201167.1\|4075124_4075490_+	bleomycin binding protein Ble-MBL	NA	NA	NA	NA
WP_000050481.1\|4076166_4077708_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_000259031.1\|4078112_4078952_-	sulfonamide-resistant dihydropteroate synthase Sul1	NA	NA	NA	NA
WP_000679427.1\|4078945_4079293_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000939727.1\|4079441_4080263_-	lincosamide nucleotidyltransferase Lnu(F)	NA	NA	NA	NA
WP_071593219.1\|4080394_4081186_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
WP_000845054.1\|4081331_4082345_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	6.1e-72	45.5
4082346:4082405	attL	NA	NA	NA	NA
WP_000454193.1\|4082547_4082898_+	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_000147567.1\|4083023_4083584_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	4.0e-49	86.2
WP_015344976.1\|4083586_4086538_+\|transposase	Tn3-like element TnAs3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.5
WP_046788546.1\|4086546_4086948_+	hypothetical protein	NA	NA	NA	NA
WP_001067784.1\|4087032_4087737_-\|transposase	IS6-like element IS1006 family transposase	A0A077SL39	Escherichia_phage	1.9e-120	85.8
WP_164529212.1\|4087794_4088631_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_001447541.1\|4088661_4089546_+	DUF3363 domain-containing protein	NA	NA	NA	NA
WP_000214122.1\|4089768_4090983_+	chloramphenicol/florfenicol efflux MFS transporter FloR	S4TR35	Salmonella_phage	1.2e-18	28.7
WP_001255015.1\|4091010_4091316_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_015344975.1\|4091427_4092921_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_001445143.1\|4092951_4093203_+	hypothetical protein	NA	NA	NA	NA
WP_000251875.1\|4093096_4093399_-	phosphoglucosamine mutase	NA	NA	NA	NA
WP_164529213.1\|4093485_4094301_-	sulfonamide-resistant dihydropteroate synthase Sul2	NA	NA	NA	NA
WP_085940648.1\|4094390_4095480_+\|transposase	IS4 family transposase ISAba1	NA	NA	NA	NA
WP_006581703.1\|4095677_4096163_-	hypothetical protein	NA	NA	NA	NA
WP_000602738.1\|4097973_4098726_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	2.4e-41	44.7
WP_000742814.1\|4099147_4100173_-	aminoglycoside O-phosphotransferase APH(4)-Ia	NA	NA	NA	NA
WP_001199192.1\|4100401_4101178_-	aminoglycoside N-acetyltransferase AAC(3)-IV	NA	NA	NA	NA
WP_001067855.1\|4101291_4101996_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000018329.1\|4102185_4103001_-	aminoglycoside O-phosphotransferase APH(3')-Ia	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	6.1e-163	100.0
WP_001067858.1\|4103151_4103856_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_064732565.1\|4103865_4104270_+	bleomycin binding protein	NA	NA	NA	NA
WP_108168472.1\|4104589_4104982_-	NimC/NimA family protein	NA	NA	NA	NA
WP_015344972.1\|4105148_4106348_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_001206356.1\|4106909_4107701_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
WP_071523897.1\|4107706_4107952_-	DUF1010 domain-containing protein	NA	NA	NA	NA
WP_001083725.1\|4108108_4108606_-	trimethoprim-resistant dihydrofolate reductase DfrA12	A0A0A0PL85	Bacillus_phage	7.5e-23	40.9
WP_000845054.1\|4108750_4109764_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	6.1e-72	45.5
WP_001162012.1\|4110069_4110627_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	5.8e-48	81.3
4109765:4109966	attR	NA	NA	NA	NA
WP_001138073.1\|4110629_4113602_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP042859

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection