CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP042861	Providencia sp. 1709051003 chromosome, complete genome	3 crisprs	WYL,DEDDh,csa3,cas3,DinG	0	0	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP042861_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042861_1

758726-758945

Orphan

Consensus_repeat	Method
CTACCATTACCCCCATTTCCACCATTGCCATTAC	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP042861_1

>merge|NZ_CP042861|1|758726-758945|PILER-CR
CTACCATTGCCCCCATTGCCACCATTACCACTACCAGAGCCGTTGCCCCCATTACCTCCGTTACCGCCATTAGTTCCCCCGTGTCCTCCATTTCCCCCATTGCCATTTACAGTTCCATTCCCGCCGTTCCCACCACTACCACCACCATCTCCATCACCGCCATTTCCGCCATCACCTCCAGTTACACTGCCATTACCGCCATTTCCTCCATTGCCATTAC

>NZ_CP042861|1|1|758726-758945|PILER-CR
CTACCATTGCCCCCATTGCCACCATTACCACTAC	CAGAGCCGTTGCCCCCATTACCTCCGTTACCGCCATTAGTTCCCCCGTGT
CCTCCATTTCCCCCATTGCCATTTACAGTTCCAT	TCCCGCCGTTCCCACCACTACCACCACCATCTCCATCACCGCCATTTCCGCCATCACCTCCAGTTACACTGCCATTA
CCGCCATTTCCTCCATTGCCATTAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042861.1\|WP_004905686.1\|751333_751810_+\|protein-CreA	unknown	unknown	gnl\|CDD\|236752
NZ_CP042861.1\|WP_110592431.1\|756291_757221_+\|homoserine-kinase	unknown	unknown	gnl\|CDD\|234920
NZ_CP042861.1\|WP_004905684.1\|751872_752589_-\|two-component-system-response-regulator-ArcA	unknown	unknown	gnl\|CDD\|183013
NZ_CP042861.1\|WP_004905661.1\|769425_769848_+\|CopG-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225564
NZ_CP042861.1\|WP_110592622.1\|753828_756288_+\|bifunctional-aspartate-kinase/homoserine-dehydrogenase-I	unknown	unknown	gnl\|CDD\|181856
NZ_CP042861.1\|WP_004905690.1\|749542_750190_+\|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase-GpmB	unknown	unknown	gnl\|CDD\|179583
NZ_CP042861.1\|WP_110592428.1\|760989_762378_-\|heavy-metal-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|182101
NZ_CP042861.1\|WP_094961916.1\|748272_748590_+\|trp-operon-repressor	unknown	unknown	gnl\|CDD\|179289
NZ_CP042861.1\|WP_110592426.1\|763208_764603_+\|efflux-transporter-outer-membrane-subunit	unknown	unknown	gnl\|CDD\|182103
NZ_CP042861.1\|WP_110592424.1\|764970_766239_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|236625
NZ_CP042861.1\|WP_004914743.1\|748953_749490_-\|non-canonical-purine-NTP-phosphatase	unknown	unknown	gnl\|CDD\|235336
NZ_CP042861.1\|WP_036958562.1\|759367_759598_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240291
NZ_CP042861.1\|WP_110592429.1\|760417_760882_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042861.1\|WP_004905671.1\|760017_760209_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042861.1\|WP_110592430.1\|757224_758520_+\|threonine-synthase	unknown	unknown	gnl\|CDD\|236418
NZ_CP042861.1\|WP_110592623.1\|753678_753744_+\|thr-operon-leader-peptide	unknown	unknown	unknown
NZ_CP042861.1\|WP_004905689.1\|750233_751148_-\|MDR-efflux-pump-AcrAB-transcriptional-activator-RobA	unknown	unknown	gnl\|CDD\|185076
NZ_CP042861.1\|WP_110592425.1\|764599_764953_+\|cation-transporter	unknown	unknown	gnl\|CDD\|182104
NZ_CP042861.1\|WP_110592423.1\|766242_769380_+\|CusA/CzcA-family-heavy-metal-efflux-RND-transporter	unknown	unknown	gnl\|CDD\|129992
NZ_CP042861.1\|WP_110592427.1\|762370_763054_-\|heavy-metal-response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|182102

Protein	Function_ID	Function_description	E-value
NZ_CP042861.1\|WP_004905686.1\|751333_751810_+\|protein-CreA	gnl\|CDD\|236752	PRK10756, PRK10756, protein CreA.	3.36775e-108
NZ_CP042861.1\|WP_110592431.1\|756291_757221_+\|homoserine-kinase	gnl\|CDD\|234920	PRK01212, PRK01212, homoserine kinase; Provisional.	9.71985e-153
NZ_CP042861.1\|WP_004905684.1\|751872_752589_-\|two-component-system-response-regulator-ArcA	gnl\|CDD\|183013	PRK11173, PRK11173, two-component response regulator; Provisional.	0
NZ_CP042861.1\|WP_004905661.1\|769425_769848_+\|CopG-family-transcriptional-regulator	gnl\|CDD\|225564	COG3019, COG3019, Predicted metal-binding protein [General function prediction only].	1.59368e-36
NZ_CP042861.1\|WP_110592622.1\|753828_756288_+\|bifunctional-aspartate-kinase/homoserine-dehydrogenase-I	gnl\|CDD\|181856	PRK09436, thrA, bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional.	0
NZ_CP042861.1\|WP_004905690.1\|749542_750190_+\|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase-GpmB	gnl\|CDD\|179583	PRK03482, PRK03482, phosphoglycerate mutase GpmB.	2.02116e-138
NZ_CP042861.1\|WP_094961916.1\|748272_748590_+\|trp-operon-repressor	gnl\|CDD\|179289	PRK01381, PRK01381, trp operon repressor.	1.86461e-48
NZ_CP042861.1\|WP_110592426.1\|763208_764603_+\|efflux-transporter-outer-membrane-subunit	gnl\|CDD\|182103	PRK09837, PRK09837, Cu(I)/Ag(I) efflux RND transporter outer membrane protein.	6.29494e-148
NZ_CP042861.1\|WP_110592424.1\|764970_766239_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|236625	PRK09783, PRK09783, copper/silver efflux system membrane fusion protein CusB; Provisional.	0
NZ_CP042861.1\|WP_004914743.1\|748953_749490_-\|non-canonical-purine-NTP-phosphatase	gnl\|CDD\|235336	PRK05074, PRK05074, non-canonical purine NTP phosphatase.	2.61365e-108
NZ_CP042861.1\|WP_036958562.1\|759367_759598_-\|hypothetical-protein	gnl\|CDD\|240291	PTZ00146, PTZ00146, fibrillarin; Provisional.	7.21456e-05
NZ_CP042861.1\|WP_110592430.1\|757224_758520_+\|threonine-synthase	gnl\|CDD\|236418	PRK09225, PRK09225, threonine synthase; Validated.	0
NZ_CP042861.1\|WP_110592428.1\|760989_762378_-\|heavy-metal-sensor-histidine-kinase	gnl\|CDD\|182101	PRK09835, PRK09835, Cu(+)/Ag(+) sensor histidine kinase.	6.09726e-178
NZ_CP042861.1\|WP_004905689.1\|750233_751148_-\|MDR-efflux-pump-AcrAB-transcriptional-activator-RobA	gnl\|CDD\|185076	PRK15121, PRK15121, MDR efflux pump AcrAB transcriptional activator RobA.	3.0519e-171
NZ_CP042861.1\|WP_110592425.1\|764599_764953_+\|cation-transporter	gnl\|CDD\|182104	PRK09838, PRK09838, periplasmic copper-binding protein; Provisional.	6.31574e-26
NZ_CP042861.1\|WP_110592423.1\|766242_769380_+\|CusA/CzcA-family-heavy-metal-efflux-RND-transporter	gnl\|CDD\|129992	TIGR00914, Nickel-cobalt-cadmium_resistance_protein_NccA, heavy metal efflux pump, CzcA family. This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Detoxification, Transport and binding proteins, Cations and iron carrying compounds].	0
NZ_CP042861.1\|WP_110592427.1\|762370_763054_-\|heavy-metal-response-regulator-transcription-factor	gnl\|CDD\|182102	PRK09836, PRK09836, DNA-binding transcriptional activator CusR; Provisional.	1.25389e-125

>NZ_CP042861.1|WP_110592430.1|757224_758520_+|threonine-synthase
MKLYNLKDNNEQVSFAQAVKQGLGKQQGLFFPQDLPEFTAAEIDELLKLDFVTRSSRILSAFIGDEIPQEELAARVKTAFAFPAPVSKVEDDVATLELYHGPTLAFKDFGGRFMAQALGQVAGEQPVTILTATSGDTGAAVAHAFYRLKNVQVVILYPEGKISPLQEKLFCTLGENIHTVAIKDDFDACQALVKQSFDDEELKKALYLNSANSINISRLLAQICYYFEVVAQIPAEKRDQLVISVPSGNFGDLTAGLLAKSMGLPVKRFIAATNVNDTVPRYLVDGQWKPKQTVATLSNAMDVSQPNNWPRIEELFRRKGWSLDELGHGAVSDDVTKETVRELDKKGYLSEPHAAVAYRVLRDQLQEGEYGLFLGTAHPAKFKESVEEILNKAIPLPKELAERAELPLLSHFLPSDFAQLRAFLMKLAPKQ
>NZ_CP042861.1|WP_110592431.1|756291_757221_+|homoserine-kinase
MIKVYAPASIGNVSVGFDVLGAAVSPADGSLLGDCVTIEAADTFSLTNQGKFVAKLPKKNEHNIVYQCWQLFCERLGRPLNVAMTLEKNMPIGSGLGSSACSVVAALMALNEFAEKPFDDTQLLGMMGVLEGRISGSVHYDNVAPCFLGGLQLIIEQNGIISQPVPAFENWYWVMAYPGIKVSTAEARAILPDSYPRHDIVNHGRYLSGFIHACHTNQPLLAATMIQDVVAEPYRTQLLPGFAAARQNAKEIGALACGISGSGPTLFAICDEKHIAEKMASYLQQHYIQNDEGFVHICRLDLAGARTIG
>NZ_CP042861.1|WP_110592622.1|753828_756288_+|bifunctional-aspartate-kinase/homoserine-dehydrogenase-I
MRVLKFGGTSVANDERVLNVADIAESKLADGQVALVLSAPAKITNHLVAMIEKTVAGQDVITHVNDAEMIFANLLKGLKEKQPGFEYDRLKKLTEQEFAQIKQVLHGITLLGQCPDSINASIICRGEKLSIAMMESVLKARGHNVTVINPVESLLAKGHYLESTVDINESTKRIADLNIPKDHFVLMAGFTAGNEKGELVVLGRNGSDYSAAVLAACLRADCCEIWTDVDGVYTCDPRLVPDARLLKGMSYQEAMELSYFGAKVLHPRTIAPIAQFQIPCLIKNTTNLSAPGTLIGDGQTDESTPVKGITNLNNMAMINVSGPGMKGMVGMAARIFSVMSRKGISVVLITQSSSEYSISFCVPQNELVRARAALEEEFYLELKDGVLDPLDVMEQLAIISVVGDGMRTLKGISARFFSALTRGNINIVAIAQGSSERSISAVIANESATTAVRLCHQMLFNAEQVIEAFIIGVGGVGNALIEQIHRQQQWLKQKHIDLRVCGIANSRAMLTDMQGIDLDNWKAELAEAKEPFSLSRLIRLEREYHFLNPVIIDCTSNQEIAEQYVNFLKDGFNVVTPNKKANTLSMDYYHQLRAASETSKRKFLYDTNVGAGLPVIENLQNLLNAGDELVHFSGILSGSLSFIFGKLDEGMSLSEATTLAKEKGFTEPDPRDDLSGMDVARKLLILAREAGYHLELQDIEIEPVLPSDFDSSGPVSEFMARLPQLDEQFAQRIKAAEAEEKVLRYVGLIEEGRCQVKIVAVDGNDPLFKVKNGENALAFYTRYYQPIPLVLRGYGAGNDVTAAGVFADMLRTLSWKLGV
>NZ_CP042861.1|WP_110592623.1|753678_753744_+|thr-operon-leader-peptide
MRNISLTIITTTTVTTGNGAG
>NZ_CP042861.1|WP_004905684.1|751872_752589_-|two-component-system-response-regulator-ArcA
MQTPHILIVEDEIVTRNTLKSIFEAEGYVVHEATDGEEMNNVLSEHDINLVIMDINLPGKNGLLLARELREQESIALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLAGGTEERRLVESYKFNGWELDINSRSLVSPAGEHYKLPRSEFRAMLHFCENPGKIQTRADLLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLDE
>NZ_CP042861.1|WP_004905686.1|751333_751810_+|protein-CreA
MRRSRLKNIVLAALLSALPSITFAEEIGSVDTVFKIFGPDHKIVVEAFDDPDVDNVTCYLSRSKTGGIKGGLGLAEDTSDAAISCQQVGPIELNDRVKRKPTKGQVVFQKRTSLVFKKLQVVRFYDPKRNALIYLTYSDKMIDGSPKNALSAVPIMPW
>NZ_CP042861.1|WP_004905689.1|750233_751148_-|MDR-efflux-pump-AcrAB-transcriptional-activator-RobA
MDQTNIIRDLLRWIDDNLDKPLSLDNVAAKAGYSKWHLQRMFKEVTDQAIGAYIRARRLSRAAVALRLTSRPILDIALQYRFDSQQTFTRAFKKQFNLTPAFYRRSEEWCAAGICPPIILDNHTNIEHEFLQMPAQELVGLEQSCSYALEEWSTACSQMRQTFWHYYLDNTTTIASEVFGLHHAIHNPEKEDEQTVFYTTAVKPEDASFNTDQYTSLTLPSGHYVKFSFNGTPTRDALQEFLYQIYGVYLPKLNLTRRPGYDIEHYRLKNIDLRHITPENDDPKTHIDTFDYYVPIKTGSTITP
>NZ_CP042861.1|WP_004905690.1|749542_750190_+|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase-GpmB
MLQVYLVRHGETEWNLARRIQGQSDSPLTATGRLQARQVAERIKSEGITHIITSDMGRTLETAQIIASVCECEITTEPRLRELNMGVLEQRAIESLTPEEEQWRKSLIDGTRGGRIPEGESMEELYTRMFAALNSCLDLPEGSRPLIVSHGIALSTLISRIMGVPAYSERRLRLRNCSLSRVDYQNSPWLANGWIVETAGEVTHLSQPALDEQQG
>NZ_CP042861.1|WP_004914743.1|748953_749490_-|non-canonical-purine-NTP-phosphatase
MYQVIAATTNPAKIKAIHLAFDAVFGAGSYQIEDINVDSSVPQQPIGNNETRTGARQRVMASRQVRPEADFWVGIEAGIEDDMTFAWIVIEHKQIRGESRSASIMIPEKILAGIREGRELGDEMAFLTGIDNIKQQGGAIGFFTDGVLTRTSVYQQALILALVPIKHEIYKELNQVED
>NZ_CP042861.1|WP_094961916.1|748272_748590_+|trp-operon-repressor
MTANQQHDPALTADENADWLRFVNLLQLAFEQDIHLPVLQLLLTPDERTALATRVKIVQELMRGEMSQRELKNELGVGIATITRGSNSLKSAPIPVKEWLEQQLL
>NZ_CP042861.1|WP_036958562.1|759367_759598_-|hypothetical-protein
MYKASIVIVSLLFPILASATSFQEKHSDNTSTYSTIYEQNHGGNGGNGGHGGNGGNGGNGGNGGHGGNGGNGGNGR
>NZ_CP042861.1|WP_004905671.1|760017_760209_-|hypothetical-protein
MFKKSIIFAFLLFPTLSFATPILPFPPEPPILDIDVNVAYNGDDDDVWFNVKGDDDDVWLNIK
>NZ_CP042861.1|WP_110592429.1|760417_760882_-|hypothetical-protein
MKKIIFALTLVTVTTHVATAQTEKEIHYNAANALNFTENNTSYSNQKSINNHLSKAGISVNDNINSTQSFLQLDRHTQAATALNFTQNSTSPAMQNMISSHQNQSPNYKKSMVKVAKPFSDMNENEKAVTMLNFHKNSSSASIQSKIIGHSKNN
>NZ_CP042861.1|WP_110592428.1|760989_762378_-|heavy-metal-sensor-histidine-kinase
MIKFFRSPVSISIRLIVLISITLSLSLLLFSSIMINSVMLHFKQQDEYTLNQLNLTIRSLLNNNTDSQSEQYARIKTIINEHQDITIYLIDKKGNELISPNATDKLITYLKNYDPHKNNQEELKNYRLSEIIIQVDSPSESKQYRLVTALSLNFHHDYLSSLINNLIVSAIILCLFTILVVYFLVIKGLKPLKDVSDEIKNVTSENLSVRLDPDSVPNELKQLTKSFNQMLVKIEDVFVRQTNFSADIAHEMRTPITNLMTETQISLSKNRSKEELVEVLYSNLEEYNRLSRMISDMLFLAQADDNRLIPEKKVINIKTEIELIFDYFEYLAEENEINLKLIGDTDPIMADKDMLRRAITNLISNAIRYTPKGDSVSINISNVKNGIELIISNPGMKIPEEHLAKLFDRFYRVDKSRQRKNEGSGIGLAIVKSIILAHKGRITVTSDDFSTRFTVFLPKEPN
>NZ_CP042861.1|WP_110592427.1|762370_763054_-|heavy-metal-response-regulator-transcription-factor
MKLLIVEDEHKTREYLSKGLSESGFIVDAIENGITGLHMATTEDYDLIILDVMLPDINGWEIAKNLRNSGKNTPILMLTALGNVEHRVKGLELGADDYLVKPFDFSELLARVRTLLRRGNSSIQKTQFTIANLHVDLIKRRVTRENDKIILTSKEFSLLEFFILHQGEVLSRSLIASKVWDMNFDSDTNVIDVAVKRLRAKIDQGYEPKLIHTIRGMGYLLEIPEND
>NZ_CP042861.1|WP_110592426.1|763208_764603_+|efflux-transporter-outer-membrane-subunit
MYSPKILIIAYALTLTGCVSLAPEYQRPNLNLPHQFNSHVSDAAKQAQTELLFPSWEQFIQDPQMKNVIEIALEKNSDLYLAALDVEEARVRFGLAGAEKYPQVNSSMSGDYSQSLESGSSFNKKYSVGIDISYELDFFGRIKNLSDADKAKFIASQEMSRATQIITIKTVAEAYLDVVYNQKLLLIAQETKQSYLNSQSIVMQKVAAGKAALSDLEQAKGQVQSISINIEKIESEIAKNENLLNFLTNDYATKINLDLGRYEPNYPLITTPPDIPSEILLKRPDIMAAEQNIISENANIGVARAAFFPSISFNTGVANSNDSLTGLFDSSNGIWNFIPKITLPIFTGGTNSRNLELANIRKNKAIANYEKSIQVAFREVKDALVIKLSLEKQLISQEQYVNTLQNVLTQKQASYRYGGLSYLDVLEAQRSLFTEQQNLLMLKIEQQKNEINLFSALGGGLIKS
>NZ_CP042861.1|WP_110592425.1|764599_764953_+|cation-transporter
MRVKMKKLNTVFFVISMAILTATSYANTAEHNHSIYPEKAAEPTINTEGKLISIDKDNKKLTINHKEIESIGWPPMTMRFTYEDENMINGLQENDELKFSFVQQGNLSMLKSVEKIN
>NZ_CP042861.1|WP_110592424.1|764970_766239_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MSLVNLTKLLLVIILSSVISILFYRYFFVIENNSQSVEKQERTVLYWYDPMYPNTKFDQPGKSPFMDMDLVPKYADENLASANSKGVTINPTQTQNLGLKTVDVKWGKLNYDLTFPAEIAFNDHQFAIVQARENGFVEKVYPFTVGERIQKGVPIAELTIPAWVEAQSEYLALKQMNASQQDLNSVIERLRLNGMPEGALSQFIKTGKVQTRFTIQAPISGVITALNLRLGMNVSKEVVIAQIQGTDPLWINASVPQSVAELLNQQTQFTVSIPAYPSQLFAVKNWLILPSAEQASRTINIRTEIADPNHLLKPGMTAYLNLVAEGNESLLIPSQAIVDSGKEQHVIAVGENGEFIPKRVRVLSESQQMTAISEGLQVGEHIVTQGIFLIDSEANIAGALAKMEALPEASASSNHSSHKSQE
>NZ_CP042861.1|WP_110592423.1|766242_769380_+|CusA/CzcA-family-heavy-metal-efflux-RND-transporter
MLEWIIRRSVANRFLVLMGVVFLVIAGIWSIRSTPVDALPDLSDVQVIIKTTYPGQAPQLVENQVTYPITTTMLSVPGAKTVRGFSAFGDSYVYVIFEDNTDLYWARSRVLEYLNQVQNQLPKGAVASIGPDATGVGWIFEYALVDKTGKHNLAELRSLQDWFLKYELKALPNVSEVATVGGVVKSYQILVDPLKLSQFSVTLPEIKQAVEMANQEAGGSSIEIAEAEYMVRASGYLQSIDDFNKIYLKTPENGVPIYLQDVARIQEGPEMRRGVAELNGEGEVVGGIILLRSGENARNVIQDVKQKLEDLSASLPEGIEIITTYDRSILIDNAIDNLSYKLLEEFIVVALVCAVFLWHFRSALVAIISLPLGLFIAFIVMRYQGINANIMSLGGIAIAIGAMVDAAIVMIENAHKKLEKWQHENEDKVIDNAQRWKVITDSAVEVGPALFISLLIITLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAAALALIVIPILMGYWIRGNIPNENKNPLNRWLISLYSPILIKVLAWPKTTLLIGFLSLFTVIWPLKHLGGEFLPAINEGDLLYMPSTLPGVSPAQAAFLLQNTDKLIKTIPEVDTVFGKVGKAETATDSAPMEMIETTIRLKPQAQWREGMTLEKIIDELDETVRLPGVANLWVPPIRNRIDMLSTGVKSPIGIKVSGRDLEEIDALAQQIEKVTKSVPGVVSVLAERLVGGRYIDVKIDREKAARFGMSISDVQVYISMATGGEMIGETVEGIERYPISIRYPQDYRNSVSAMKLLPILTPSKQQIVLSDVADVSVNMGAPMLKTENARPTSWIYIDARDRDMVSVIKDIDAAIKDNIQMKPGLSYSFTGQFELLERANQKLMLMVPATIMIIFVLLYLAFRRFSEALLILLSLPFALVGAIWFLYWMNFNLSVATGTGFIALAGVAAEFGVVMLIYLRHAIEDKEKQKGISKLSNQDLDRALYEGAVLRVRPKAMTVAVILAGLLPILLGTGVGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLICQLRHKK
>NZ_CP042861.1|WP_004905661.1|769425_769848_+|CopG-family-transcriptional-regulator
MKKIILGGMFLLSFSAFSQNQSVQLYKDANCGCCQLWGEGVKKAGYDVVVNEISYDELNKLNDELNVPYNLRSCHIAKYKGKVIVGHVPVSSLDAIDALPADVVGISVPGMPIGSLGMEQPDGRTQPYSVVQFKANGEYR

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Crispr_ID: NZ_CP042861_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042861_2

1082700-1082790

Orphan

Consensus_repeat	Method
CTATATTCTTCATAATTCAAATTGTAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042861_2

>merge|NZ_CP042861|2|1082700-1082790|CRISPRCasFinder
CTATATTCTTCATAATTCAAATTGTAGCTGTGTTGGCAGCACTCAGCCCCACAGGTCACATACCTATATTCTTCATAATTCAAGTTGTAGC

>NZ_CP042861|2|1|1082700-1082790|CRISPRCasFinder
CTATATTCTTCATAATTCAAATTGTAGC	TGTGTTGGCAGCACTCAGCCCCACAGGTCACATAC
CTATATTCTTCATAATTCAAGTTGTAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042861.1\|WP_036958921.1\|1081468_1082233_+\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	unknown	unknown	gnl\|CDD\|234581
NZ_CP042861.1\|WP_096864776.1\|1074302_1075862_+\|glutamate--cysteine-ligase	unknown	unknown	gnl\|CDD\|235001
NZ_CP042861.1\|WP_004264824.1\|1080884_1081430_+\|ribosome-maturation-factor-RimM	unknown	unknown	gnl\|CDD\|234650
NZ_CP042861.1\|WP_110592308.1\|1076614_1077901_-\|DUF21-domain-containing-protein	unknown	unknown	gnl\|CDD\|236933
NZ_CP042861.1\|WP_004914042.1\|1076013_1076529_+\|S-ribosylhomocysteine-lyase	unknown	unknown	gnl\|CDD\|179399
NZ_CP042861.1\|WP_004914034.1\|1079119_1080481_+\|signal-recognition-particle-protein	unknown	unknown	gnl\|CDD\|236780
NZ_CP042861.1\|WP_004264815.1\|1072918_1073104_+\|carbon-storage-regulator-CsrA	unknown	unknown	gnl\|CDD\|234973
NZ_CP042861.1\|WP_004264832.1\|1087321_1088494_-\|bifunctional-chorismate-mutase/prephenate-dehydratase	unknown	unknown	gnl\|CDD\|182594
NZ_CP042861.1\|WP_110592307.1\|1083158_1084253_+\|3-deoxy-7-phosphoheptulonate-synthase	unknown	unknown	gnl\|CDD\|237190
NZ_CP042861.1\|WP_004264831.1\|1085702_1087271_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP042861.1\|WP_036958924.1\|1088778_1089111_-\|ribosome-associated-translation-inhibitor-RaiA	unknown	unknown	gnl\|CDD\|182378
NZ_CP042861.1\|WP_110592306.1\|1084266_1085388_+\|bifunctional-chorismate-mutase/prephenate-dehydrogenase	unknown	unknown	gnl\|CDD\|183035
NZ_CP042861.1\|WP_004264820.1\|1077943_1078735_-\|inner-membrane-protein-YpjD	unknown	unknown	gnl\|CDD\|226621
NZ_CP042861.1\|WP_004264823.1\|1080617_1080866_+\|30S-ribosomal-protein-S16	unknown	unknown	gnl\|CDD\|234588
NZ_CP042861.1\|WP_004264827.1\|1082274_1082628_+\|50S-ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|235418
NZ_CP042861.1\|WP_110592304.1\|1092130_1094704_+\|ATP-dependent-chaperone-ClpB	unknown	unknown	gnl\|CDD\|182791
NZ_CP042861.1\|WP_110592305.1\|1091272_1092007_+\|polyphenol-oxidase	unknown	unknown	gnl\|CDD\|182677
NZ_CP042861.1\|WP_004264836.1\|1090295_1091273_+\|23S-rRNA-pseudouridine(1911/1915/1917)-synthase-RluD	unknown	unknown	gnl\|CDD\|183020
NZ_CP042861.1\|WP_004264835.1\|1089426_1090158_-\|outer-membrane-protein-assembly-factor-BamD	unknown	unknown	gnl\|CDD\|182792
NZ_CP042861.1\|WP_036958303.1\|1101338_1102130_+\|endonuclease/exonuclease/phosphatase-family-protein	unknown	unknown	gnl\|CDD\|235454

Protein	Function_ID	Function_description	E-value
NZ_CP042861.1\|WP_036958921.1\|1081468_1082233_+\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	gnl\|CDD\|234581	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed.	1.73026e-169
NZ_CP042861.1\|WP_096864776.1\|1074302_1075862_+\|glutamate--cysteine-ligase	gnl\|CDD\|235001	PRK02107, PRK02107, glutamate--cysteine ligase; Provisional.	0
NZ_CP042861.1\|WP_004264824.1\|1080884_1081430_+\|ribosome-maturation-factor-RimM	gnl\|CDD\|234650	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional.	9.25827e-83
NZ_CP042861.1\|WP_110592308.1\|1076614_1077901_-\|DUF21-domain-containing-protein	gnl\|CDD\|236933	PRK11573, PRK11573, hypothetical protein; Provisional.	0
NZ_CP042861.1\|WP_004914042.1\|1076013_1076529_+\|S-ribosylhomocysteine-lyase	gnl\|CDD\|179399	PRK02260, PRK02260, S-ribosylhomocysteine lyase.	4.65053e-105
NZ_CP042861.1\|WP_004914034.1\|1079119_1080481_+\|signal-recognition-particle-protein	gnl\|CDD\|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	0
NZ_CP042861.1\|WP_004264815.1\|1072918_1073104_+\|carbon-storage-regulator-CsrA	gnl\|CDD\|234973	PRK01712, PRK01712, carbon storage regulator CsrA.	6.40307e-34
NZ_CP042861.1\|WP_004264832.1\|1087321_1088494_-\|bifunctional-chorismate-mutase/prephenate-dehydratase	gnl\|CDD\|182594	PRK10622, pheA, bifunctional chorismate mutase/prephenate dehydratase; Provisional.	0
NZ_CP042861.1\|WP_110592307.1\|1083158_1084253_+\|3-deoxy-7-phosphoheptulonate-synthase	gnl\|CDD\|237190	PRK12755, PRK12755, phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional.	0
NZ_CP042861.1\|WP_004264831.1\|1085702_1087271_+\|HAMP-domain-containing-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	3.24888e-82
NZ_CP042861.1\|WP_036958924.1\|1088778_1089111_-\|ribosome-associated-translation-inhibitor-RaiA	gnl\|CDD\|182378	PRK10324, PRK10324, ribosome-associated translation inhibitor RaiA.	2.79983e-49
NZ_CP042861.1\|WP_110592306.1\|1084266_1085388_+\|bifunctional-chorismate-mutase/prephenate-dehydrogenase	gnl\|CDD\|183035	PRK11199, tyrA, bifunctional chorismate mutase/prephenate dehydrogenase; Provisional.	0
NZ_CP042861.1\|WP_004264820.1\|1077943_1078735_-\|inner-membrane-protein-YpjD	gnl\|CDD\|226621	COG4137, COG4137, ABC-type uncharacterized transport system, permease component [General function prediction only].	7.57239e-88
NZ_CP042861.1\|WP_004264823.1\|1080617_1080866_+\|30S-ribosomal-protein-S16	gnl\|CDD\|234588	PRK00040, rpsP, 30S ribosomal protein S16; Reviewed.	8.78834e-45
NZ_CP042861.1\|WP_004264827.1\|1082274_1082628_+\|50S-ribosomal-protein-L19	gnl\|CDD\|235418	PRK05338, rplS, 50S ribosomal protein L19; Provisional.	1.02829e-69
NZ_CP042861.1\|WP_110592304.1\|1092130_1094704_+\|ATP-dependent-chaperone-ClpB	gnl\|CDD\|182791	PRK10865, PRK10865, ATP-dependent chaperone ClpB.	0
NZ_CP042861.1\|WP_110592305.1\|1091272_1092007_+\|polyphenol-oxidase	gnl\|CDD\|182677	PRK10723, PRK10723, polyphenol oxidase.	3.42273e-157
NZ_CP042861.1\|WP_004264836.1\|1090295_1091273_+\|23S-rRNA-pseudouridine(1911/1915/1917)-synthase-RluD	gnl\|CDD\|183020	PRK11180, rluD, 23S rRNA pseudouridine(1911/1915/1917) synthase RluD.	0
NZ_CP042861.1\|WP_004264835.1\|1089426_1090158_-\|outer-membrane-protein-assembly-factor-BamD	gnl\|CDD\|182792	PRK10866, PRK10866, outer membrane protein assembly factor BamD.	2.0827e-161
NZ_CP042861.1\|WP_036958303.1\|1101338_1102130_+\|endonuclease/exonuclease/phosphatase-family-protein	gnl\|CDD\|235454	PRK05421, PRK05421, endonuclease/exonuclease/phosphatase family protein.	5.42889e-141

>NZ_CP042861.1|WP_004264827.1|1082274_1082628_+|50S-ribosomal-protein-L19
MSNIIKQLEQEQMKQDVPSFRQGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSIAVKRRGAVRRSKLYYLRERSGKAARIKERLNAK
>NZ_CP042861.1|WP_036958921.1|1081468_1082233_+|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD
MWIGVISLFPEMFRAITEYGVTGRAVKNGLLTFECWNPRDFTHDKHKTVDDRPYGGGPGMLMMVQPLKDAINAARTEAGEGAKVIYLSPQGRKLSQDGVCELATNEKLILVCGRYEGIDERIIQTEVDEEWSIGDYVLSGGELPAMVLIDSVSRFIPGVLGHQASAQEDSFADGLLDCPHYTRPEVLDGMQVPDVLLSGNHAKIDSWRMKQSLGRTWLRRPELLESLALTDEQRMLLAEFQREYQSEQQMNPDN
>NZ_CP042861.1|WP_004264824.1|1080884_1081430_+|ribosome-maturation-factor-RimM
MSKQTKLQPPENPIVLGKLGAAYGIRGWLKVFSSTEHAESIFEYQPWFIQRSGQWQHIEIEDWKHHNKDIIVKLNGVDDRDAAALLTNFEIAVDSTQLPELENEYYWKDLMGCQVVTLQGYDLGTITDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLDAKLIEVDWDPGF
>NZ_CP042861.1|WP_004264823.1|1080617_1080866_+|30S-ribosomal-protein-S16
MVTIRLSRGGAKKRPFYQIVVTDSRNARDGRFIERIGFFNPIAAGQAEELRLDLDRVEHWVGLGATISDRVAQLVKQAKKAA
>NZ_CP042861.1|WP_004914034.1|1079119_1080481_+|signal-recognition-particle-protein
MFDNLTDRLSRTLRNISGRGRLTDENIKETLREVRMALLEADVALPVVREFIQKVKENAVGQDVNKSLTPGQEFIKIVQNELTRAMGDENHQLNLSAQPPAVVLMAGLQGAGKTTSVAKLGKLLKEKQKKKVLVVSADVYRPAAIKQLETLAESVGIDFFPSEVQEKPAAIVQKALKHAQLQFYDVLLVDTAGRLHVDEAMMEEIQEVHRIIKPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRAITGKPIKFLGVGEKTDALEPFHPERVASRILGMGDVISLIEEIEHKVDRDEAEKLAKKLKTGDGFDLNDFLSQLKQMRNMGGMASMMSKMPGMSQLPDAVKSQMDDKITVRMEAMINSMTRKEREKPEIIKGSRKRRIAAGSGTTVQEVNRLLKQFDDMQRMMKKMKKGGLAKMMRGMKGMMPPGFPGR
>NZ_CP042861.1|WP_004264820.1|1077943_1078735_-|inner-membrane-protein-YpjD
MPVFAVIAVCTYMVSLLLIVPGQVRKQPFYRHLALFLAVVALVTHAITLKFLIFSEAEGQNLTLLNLGSTVSLLMCVIMTVVAYWGKAWYLTPIVYSFAIINLMLSTLMPGEFITHLEARVPLFVHIGLALLSYATLLIAALYALQVALIDHQLKNKTLKFSPDMPPMMVIERKMFHITQVGVILLTLTLCTGFIYMDNIFDKENIHKSVLSVIAWFVYITLLWGHFHGGWRGKRVLFFHVGGSIILTMAFFGNRLIQEFMVF
>NZ_CP042861.1|WP_110592308.1|1076614_1077901_-|DUF21-domain-containing-protein
MDDVSTSTLIIILIVLIFMSAYFSASETGMMTLNRYRLKHLAKQGNRSAIRVEKLLKHPDKLLSLVLIGNNLINIVASALATIIGMRLYGNAGVAMATGILTFVILIFAEVMPKTLAALYPEKIAFPSSYLLKPLQVVMMPIVWAFNTISALLLRCIGVKSLTARTDAVNKEELRTIVNESKHKISRRNQDMLISILDLDKVTVGDIMLPRNEIVGIDVNDDWKSIIRQLTHSPHGRIVLYRDSLDDSIGILRVREAYRLMMEKREFNKQNLIKAADNIYFIPNSTPLNVQLVNFQHNKEKLGIIVDEYGEIQGLITVEDILEEIVGDFTTSMSPSLAEEVLPQSDGSVLVDGSANIRELNKAFDWNLPIDGPRTVNGMVLEVIGDIPQLEEQIVVGHYLIEVLAMNENIVKQVRITPLTFSSQVPDL
>NZ_CP042861.1|WP_004914042.1|1076013_1076529_+|S-ribosylhomocysteine-lyase
MPLLDSFTVDHTRMSAPAVRVAKTMKTPSGDTITVFDLRFTVPNEEAMTEKGTHTLEHLFAGFMRDHLNGNGVEIIDISPMGCRTGFYMSLIGQPDELRVANAWKAAMEDVLQVKDQNKIPELNVYQCGTYKMHSLEEAQQIARNVLASEIGINKNDELALPAEKLEQLHV
>NZ_CP042861.1|WP_096864776.1|1074302_1075862_+|glutamate--cysteine-ligase
MIPDVSKALSWLEAHPETLNGIQRGIERETLRVTPTGAIAETLHPEGLGKALTHKWITTDFAESLLEFITPVDKSISHNLAFLRDLHRYTARHLQDERMWPLSMPCFIESEDKITLAQYGSSNVGQFKTLYREGLKNRYGALMQTIAGVHYNFSLPIEFWQAWAGIEDEESGKEKISEGYLRLIRNYYRFGWVIPYLFGASPAICGSFLKDRDTTLSFDKTDCGTYYLPYATSLRMSDLGYTNKSQSDLNITFNKLDEYVENLKKAIHKPSAEFEKLGVKKGGKYIQLNTNVLQIENELYAPIRPKRVPKGNESPSDALLRGGIEYIEVRSLDINPFSAIGVNETQARFVDLFLIWCVLADAPEMNAQELDCCRQNWNRVILEGRKPGQVIGFGCGSEVKPLVDVGQQLFNDLIRVAEVLDTCCDAKYQEVCHQFVAMFKDPTLTYSALVMDEMLEKGIGGYGLELAEKYFEQLVNEPYEVITEEQFEQARLASIAKQAKMEQSESESFEDYLRIHAGR
>NZ_CP042861.1|WP_004264815.1|1072918_1073104_+|carbon-storage-regulator-CsrA
MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYQRIQAEKTQPDNQ
>NZ_CP042861.1|WP_110592307.1|1083158_1084253_+|3-deoxy-7-phosphoheptulonate-synthase
MIMQKDVLNNVNIQDEQVLITPESLKEKYPLSRSNLHAIATSRQVIADIIHQRDPRLLVVCGPCSIHDVDAAIEYGERLKVLAEELSDSLYIVMRVYFEKPRTTVGWKGLISDPFMDGSFEMEKGLHIARDLLTNLVNMGLPLATEALDPNNPQYLGDLFSWSAIGARTTESQTHREMASGLSMPVGFKNGTDGSLSTAINALKAAAMPHRFMGINQSGQVCLLHTKGNSNGHVILRGGKTPNYSAEDIAACEAEMKKAGLEPSLMVDCSHGNSNKDYRRQPLVVDSIIEQIINGNESITGIMLESHINEGNQTSEQARDTMKYGVSVTDACINWQTTETVLRKLHQALLPVLEQRAQKLSKVS
>NZ_CP042861.1|WP_110592306.1|1084266_1085388_+|bifunctional-chorismate-mutase/prephenate-dehydrogenase
MSVELSHLREQIDEVDKSLLDLLAKRLQLVAEVGEVKSLHGLPIYVPERETSMLAARRAEAERMGIPPDLIEDILRRIMRESYARENDKGFKTLNPSAGPIVIVGGDGKMGRLFHRLLNLSGYQVKTLNEDDWAQAESIVAGASVVMVSVPIHLTVQVINQLPKLDKSTVLMDIASIKQQPLEAMLAAHDGPVLGLHPMFGPDIGSVAKQVFAYCNGRGSESYQWFLEQLLVWGARLKEISAEEHDKNMSFIQALRHFTTFTYGRNLAEENIDLQQLLDLSSPIYRLELAMVGRLFAQDPQLYADIIMSSNENVELIRRYHQLLGDSIALLEKKDKAEFIRQFNQISQWFGEDAHHFMKESQSLLQRANDNRK
>NZ_CP042861.1|WP_004264831.1|1085702_1087271_+|HAMP-domain-containing-protein
MSFKNLKISMKLTVAFGGFVALIILSSLFSLANMNRANDGMKQVLYESYPIASTAGQMMDNFYSFIGIQELILLDDRGSDKRREELAKITLKINGLMESLENNVTDDRSKEVLADLRVIRQQFHSSITRINTFLSENNRQAAIDEMMTKTSSIQRDYRDQIQTLMAIQDLEMQEVGRKVNADYENNKLLLAVLSILSIGAGCVMGWYITNIITRPLENAVNFAQSIANGDLTKDIQVTSKDETGVLLNALNDMKEHLLEIVQEVQQGSESISAAAGQIVAGNQNLAARTEEQAASVEETASSMEQITSTVQNTTEHTHEASMLADQAAIIVQNNGDMMSQVTNKMRAINGSSSQMTEIINLIDSIAFQTNILALNASVEAARAGEHGRGFAVVAGEVRLLAQKSAASASDIRGLIENSSSQTQEGMELVEKATQQIHGMVDSVKEMNALLREIGQASREQSDGISQINSAVGQLDLTTQQNASLVEESVVAADSLNEQAYHLKELVNYFRVKSSNYQPEVRA
>NZ_CP042861.1|WP_004264832.1|1087321_1088494_-|bifunctional-chorismate-mutase/prephenate-dehydratase
MENSTNLLKVREKISQLDSELLNLLAKRRGYAVEVAETKIDDSRPIRDKDRERQLLDVLINKGKPLGLDGFYITRLFQMIIEDSVLTQQAILQKHLNLTPSDTARFAFLGPKGSYSHIAARQYSARHFDQLVECSCHKFQDIFSLVENGQAEYGILPIENTSSGAINDVYDLLQNTSLSIVGEIRLPINHCLLTTGNTDLSQIKTVYSHPQPFQQCSQYLAQFPHWEIKYCDSTSTAMQMVADQNSPSVAALGSEAGGALYDLSVIEHNLANQQINMTRFIVVAPQPIEVTEQVPAKTTLLLTTGQQAGALVDALVILKNNKIIMSKLESRPINGKPWEEMFYVDVHANLRSDNMQQALRELSTITRSIKILGCYPSENVVPVEPEKITP
>NZ_CP042861.1|WP_036958924.1|1088778_1089111_-|ribosome-associated-translation-inhibitor-RaiA
MIVNITSKQMDITPAIREHIESRLTKLDKWQVSLINTHVVLSKEPQGFMVDANIKTATGKLVASAKHEDMYVAINELINKLERQLNKVQHKGESRRAYNSVKEANNTVTL
>NZ_CP042861.1|WP_004264835.1|1089426_1090158_-|outer-membrane-protein-assembly-factor-BamD
MIRMKNLVAAATLSLILVGCSSTPEVSPDSTPAEIYATGQQKLQDGNFKAAIKQFEALDNRYPFGPYAQQVQLDLIYAYYKSAELPMAIAAIDRFMRLNPTHPNIDYVLYMRGLTAMALDDSLLQGLFGIDRSDRDPQHARVAFKDFSQLVRYYPNSLYSNDASKRLVFLKDRLAKFDLSVVEYYNKRGAYVAVVNRVQQMLKDYPDTEATRNALAYMEIAYNEMGLNQEANKVASIIAANPQ
>NZ_CP042861.1|WP_004264836.1|1090295_1091273_+|23S-rRNA-pseudouridine(1911/1915/1917)-synthase-RluD
MAQQVQLSATIAESQLGQRLDQALAELFPDYSRSRIKEWILADRVQVNGKVINKPKEKVFGSEQILIDALIEEDNRWEPQDIPLNVIYEDEDILIINKPRDLVVHPGAGNPDGTILNALLYRYPEIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTHLVEALQRREITREYEAVAVGRMTAGGMVEEPISRHPTKRTHMAVHPMGKPAVTHYRVMEHFRAHTRLRLRLETGRTHQIRVHMAHINHPLIGDPLYGGRPRPLKGATEEFLEVMRNFDRQALHATMLRLYHPISGIQMEWHAPLPDDMVKLIEALKADTELHKDDMDW
>NZ_CP042861.1|WP_110592305.1|1091272_1092007_+|polyphenol-oxidase
MNTLIFPDWPQPKNIASCSTTRVGGVSLPPFDSLNLGDHVGDIPNAVSENRQRLETLAQLPQQPVWLEQVHGTDVLQLVGDKIHNRQADAVYSNQVGQVCAIMTADCLPVLLTNQAGTEVAAAHAGWRGLCHGVLENTINQFISPTNEIIAWLGPAIGAEKFEVGKEVKEAFVNQSSDLASAFISYNDKYLADIYLLARKKLRAAGVTKVYGGDFCTVTDENRFFSYRREGKTGRMASLIWINT
>NZ_CP042861.1|WP_110592304.1|1092130_1094704_+|ATP-dependent-chaperone-ClpB
MRLDRLTNKFQQALADAQSLALGRENQFIEPIHLLSALFNQEGGTVRPLLTTLGVNAVQFQQKVEDALGRLPQVQGVAGDVQPSSDLMRHLNLCDQLAQKHGDEFISSELFLVAALEANTTLADMLKAAGVNKDNLKKAIEQMRGGEKVNDQSAEDQRQALKKYTVDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGEIPEGLKNKRVLSLDMGALIAGAKYRGEFEERLKAVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDPALERRFQKVYVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYITDRMLPDKAIDLIDEAGASLRMQMDSKPESLDRLERRIIQLKLEQQALKKESDDASKKRLEMLEEELAEKEREYSALEEEWKAEKASLTGTQHIKAELENTRIEMEKARRMGDLAKMSELQYGKIPELEKQLEAATKAEGKSMKLLRNKVTDVEIAEILARWTGIPVSRMLESEREKLLRMEQQLHQRVIGQDEAVVAVSNAIRRSRAGLSDPNRPIGSFMFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHAVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSDLIQERFGMIGYSEMKDMVMEVVSHSFRPEFINRIDEVVVFHPLGKEQITNIANIQLARLYKRLEEHGYEVSATPAALEKIGEAGFDLIFGARPLKRAIQQEIENPLAQEILSGKLLPGKPVVLDVENDEIVAKQ
>NZ_CP042861.1|WP_036958303.1|1101338_1102130_+|endonuclease/exonuclease/phosphatase-family-protein
MAKRTYSVRYIAGEPAKRIQPMPVHMLGESLPIGLPLFAAGETLDVVTWNIYKQQRPNWKYTLNELVKDRKLILLQEAQMSPELISFAASHKLIADQVPALPFSPHPAGVMTLAASHPIYCCPLREKEPLLRLAKSALITVYPLPNGKHLMVANVHAINFSFGVDVYTRQLSKLGVHIAKHVGPVILAGDFNAWSRQRVNALKRFIRSVGLKEIVFSDDYRTKAFGRPLDYVFYRGLNVKDSTVLPTDASDHNPIMTKFTLSK

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Crispr_ID: NZ_CP042861_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042861_3

3886670-3886776

Orphan

Consensus_repeat	Method
GAATGAAGCCAACAACGCCACAGCATGAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042861_3

>merge|NZ_CP042861|3|3886670-3886776|CRISPRCasFinder
GAATGAAGCCAACAACGCCACAGCATGAAGTATGACGAAAATTGGGGAACATACATAAGTATGTGCCCCAACTAACCGAATGAAGCCAACAACGCCACAGCGTGAAG

>NZ_CP042861|3|2|3886670-3886776|CRISPRCasFinder
GAATGAAGCCAACAACGCCACAGCATGAAG	TATGACGAAAATTGGGGAACATACATAAGTATGTGCCCCAACTAACC
GAATGAAGCCAACAACGCCACAGCGTGAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042861.1\|WP_110591204.1\|3875911_3877594_-\|electron-transfer-flavoprotein-ubiquinone-oxidoreductase	unknown	unknown	gnl\|CDD\|223717
NZ_CP042861.1\|WP_094961471.1\|3888266_3889538_-\|high-affinity-branched-chain-amino-acid-ABC-transporter-permease-LivM	unknown	unknown	gnl\|CDD\|236896
NZ_CP042861.1\|WP_004258540.1\|3894084_3895062_-\|cell-division-protein-FtsX	unknown	unknown	gnl\|CDD\|182910
NZ_CP042861.1\|WP_110591198.1\|3892052_3892466_+\|aspartate-1-decarboxylase-autocleavage-activator-PanM	unknown	unknown	gnl\|CDD\|380212
NZ_CP042861.1\|WP_004258523.1\|3889534_3890461_-\|high-affinity-branched-chain-amino-acid-ABC-transporter-permease-LivH	unknown	unknown	gnl\|CDD\|182689
NZ_CP042861.1\|WP_096864389.1\|3879479_3880919_-\|cytosine-permease	unknown	unknown	gnl\|CDD\|224374
NZ_CP042861.1\|WP_110591201.1\|3882329_3883514_-\|CoA-transferase	unknown	unknown	gnl\|CDD\|367110
NZ_CP042861.1\|WP_110591199.1\|3885736_3886555_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042861.1\|WP_164561281.1\|3887490_3888261_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|183080
NZ_CP042861.1\|WP_004908157.1\|3890563_3891673_-\|branched-chain-amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|237959
NZ_CP042861.1\|WP_004258535.1\|3892948_3893827_-\|RNA-polymerase-sigma-factor-RpoH	unknown	unknown	gnl\|CDD\|235838
NZ_CP042861.1\|WP_110591200.1\|3883571_3885239_-\|urocanate-hydratase	unknown	unknown	gnl\|CDD\|235448
NZ_CP042861.1\|WP_004258545.1\|3895054_3895720_-\|cell-division-ATP-binding-protein-FtsE	unknown	unknown	gnl\|CDD\|182829
NZ_CP042861.1\|WP_004258531.1\|3892452_3892839_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319940
NZ_CP042861.1\|WP_004258469.1\|3875109_3875823_+\|UTRA-domain-containing-protein	unknown	unknown	gnl\|CDD\|188194
NZ_CP042861.1\|WP_165119765.1\|3873579_3874833_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042861.1\|WP_004258508.1\|3886789_3887491_-\|high-affinity-branched-chain-amino-acid-ABC-transporter-ATP-binding-protein-LivF	unknown	unknown	gnl\|CDD\|183231
NZ_CP042861.1\|WP_004258476.1\|3877605_3878556_-\|electron-transfer-flavoprotein-subunit-alpha	unknown	unknown	gnl\|CDD\|215032
NZ_CP042861.1\|WP_137019286.1\|3878571_3879327_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
NZ_CP042861.1\|WP_004258492.1\|3881193_3882333_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173847

Protein	Function_ID	Function_description	E-value
NZ_CP042861.1\|WP_004258476.1\|3877605_3878556_-\|electron-transfer-flavoprotein-subunit-alpha	gnl\|CDD\|215032	PLN00022, PLN00022, electron transfer flavoprotein subunit alpha; Provisional.	1.48069e-122
NZ_CP042861.1\|WP_094961471.1\|3888266_3889538_-\|high-affinity-branched-chain-amino-acid-ABC-transporter-permease-LivM	gnl\|CDD\|236896	PRK11301, livM, leucine/isoleucine/valine transporter permease subunit; Provisional.	0
NZ_CP042861.1\|WP_004258540.1\|3894084_3895062_-\|cell-division-protein-FtsX	gnl\|CDD\|182910	PRK11026, ftsX, cell division ABC transporter subunit FtsX; Provisional.	0
NZ_CP042861.1\|WP_110591198.1\|3892052_3892466_+\|aspartate-1-decarboxylase-autocleavage-activator-PanM	gnl\|CDD\|380212	NF033213, matur_PanM, aspartate 1-decarboxylase autocleavage activator PanM. Members of this family, called PanM (or PanZ), although related to the GNAT family N-acetyltransferases, have a different function. Then enzyme PanD, aspartate 1-decarboxylase, has an active site modified Ser residue, created by cleavage of a precursor form. PanM promotes the maturation of the CoA biosynthesis enzyme PanD, but also inhibits its activity in the presence of CoA. Figure 6 in PMID:26276430 identifies residues considered critical to interaction with PanD; seed alignment sequences and cutoff scores were chosen to separate proposed PanM from functionally distinct relatives.	3.65766e-71
NZ_CP042861.1\|WP_004258523.1\|3889534_3890461_-\|high-affinity-branched-chain-amino-acid-ABC-transporter-permease-LivH	gnl\|CDD\|182689	PRK10740, PRK10740, high-affinity branched-chain amino acid ABC transporter permease LivH.	9.67044e-178
NZ_CP042861.1\|WP_096864389.1\|3879479_3880919_-\|cytosine-permease	gnl\|CDD\|224374	COG1457, CodB, Purine-cytosine permease and related proteins [Nucleotide transport and metabolism].	5.13586e-95
NZ_CP042861.1\|WP_110591201.1\|3882329_3883514_-\|CoA-transferase	gnl\|CDD\|367110	pfam02515, CoA_transf_3, CoA-transferase family III. CoA-transferases are found in organisms from all lines of descent. Most of these enzymes belong to two well-known enzyme families, but recent work on unusual biochemical pathways of anaerobic bacteria has revealed the existence of a third family of CoA-transferases. The members of this enzyme family differ in sequence and reaction mechanism from CoA-transferases of the other families. Currently known enzymes of the new family are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: (R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase. In addition, a large number of proteins of unknown or differently annotated function from Bacteria, Archaea and Eukarya apparently belong to this enzyme family. Properties and reaction mechanisms of the CoA-transferases of family III are described and compared to those of the previously known CoA-transferases.	1.03375e-152
NZ_CP042861.1\|WP_164561281.1\|3887490_3888261_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|183080	PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional.	0
NZ_CP042861.1\|WP_004908157.1\|3890563_3891673_-\|branched-chain-amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|237959	PRK15404, PRK15404, high-affinity branched-chain amino acid ABC transporter substrate-binding protein.	0
NZ_CP042861.1\|WP_004258535.1\|3892948_3893827_-\|RNA-polymerase-sigma-factor-RpoH	gnl\|CDD\|235838	PRK06596, PRK06596, RNA polymerase factor sigma-32; Reviewed.	0
NZ_CP042861.1\|WP_110591200.1\|3883571_3885239_-\|urocanate-hydratase	gnl\|CDD\|235448	PRK05414, PRK05414, urocanate hydratase; Provisional.	0
NZ_CP042861.1\|WP_004258545.1\|3895054_3895720_-\|cell-division-ATP-binding-protein-FtsE	gnl\|CDD\|182829	PRK10908, PRK10908, cell division ATP-binding protein FtsE.	8.49613e-158
NZ_CP042861.1\|WP_004258469.1\|3875109_3875823_+\|UTRA-domain-containing-protein	gnl\|CDD\|188194	TIGR02018, Histidine_utilization_repressor, histidine utilization repressor, proteobacterial. This model represents a proteobacterial histidine utilization repressor. It is usually found clustered with the enzymes HutUHIG so that it can regulate its own expression as well. A number of species have several paralogs and may fine-tune the regulation according to levels of degradation intermediates such as urocanate. This family belongs to the larger GntR family of transcriptional regulators. [Energy metabolism, Amino acids and amines, Regulatory functions, DNA interactions].	2.33116e-78
NZ_CP042861.1\|WP_004258531.1\|3892452_3892839_+\|VOC-family-protein	gnl\|CDD\|319940	cd08352, VOC_Bs_YwkD_like, vicinal oxygen chelate (VOC) family protein Bacillus subtilis YwkD and similar proteins. uncharacterized subfamily of vicinal oxygen chelate (VOC) family contains Bacillus subtilis YwkD and similar proteins. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	2.8768e-72
NZ_CP042861.1\|WP_004258508.1\|3886789_3887491_-\|high-affinity-branched-chain-amino-acid-ABC-transporter-ATP-binding-protein-LivF	gnl\|CDD\|183231	PRK11614, livF, high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF.	5.40944e-159
NZ_CP042861.1\|WP_110591204.1\|3875911_3877594_-\|electron-transfer-flavoprotein-ubiquinone-oxidoreductase	gnl\|CDD\|223717	COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion].	3.70507e-81
NZ_CP042861.1\|WP_137019286.1\|3878571_3879327_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	1.73783e-86
NZ_CP042861.1\|WP_004258492.1\|3881193_3882333_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|173847	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.	3.57401e-137

>NZ_CP042861.1|WP_110591199.1|3885736_3886555_+|hypothetical-protein
MSINITNFFNRVRNYFIPKNKRNFDINKVINLNSLLPYLIKNKSWFYITEEKEAINFARKHYYLPLFSSSKKNCHISFDNISNENQVINLEIKQDINPFFVIENKIRSSGYIELEESHFKQIASDIPRMNILIKNQQDNPIKLQSIMDIKKYLGKLPPSHICHICNIANQAHLAEGTIKASEMISKTQSEFLFQDHGKSSIMINILDNNSYQVKSEGYFNLINTKTGKKVNNSEVIAETTTHFTFDEQDKLIAEKQDKLTLKIKIETNPPQL
>NZ_CP042861.1|WP_110591200.1|3883571_3885239_-|urocanate-hydratase
MLNRTDSTRVIRAPRGSEKSCKSWLTEAVYRMIQNNLDPDVAEHPQSLVVYGGIGRAARDWECYDKILDVLTTLEDDQTLLVQSGKPVGVFPTHPDAPRVLIANSNIVPHWANWDHFNELDRKGLMMYGQMTAGSWIYIGSQGIVQGTYETFVSLAKQHFNGNAAGRWILTGGLGGMGGAQPLAATMAGFSMIAVECDESRIDFRLRTRYVDKKATSLDEALQYIDDAKANGQPVSVGLLGNAADVYSELVKRNITPDSVTDQTSAHDPVHGYLPQGWTLTQWREKQQTAPAEVTKAAKKSMAVQVDAMLTMQKRGSAAFDYGNNIRQMAKDEGISNAFDFPGFVPAYIRPLFCEGVGPFRWVALSGDPEDIYKTDQKVKELLPDDKHLHNWLDMARERIAFQGLPARICWVGLKDRERLGRAFNEMVKSGELKGPIVIGRDHLDSGSVASPHRETESMKDGSDAVSDWPLLNALLNTAGGATWVSLHHGGGVGMGFSQHSGVVIVCDGTDAADKRLARVLHNDPATGVMRHADAGYDIAINCAKEQGLNLPMVK
>NZ_CP042861.1|WP_110591201.1|3882329_3883514_-|CoA-transferase
MNAALTQKRQGPLAGIKVIDLSRVLAGPYCTGMMADLGAEVIKIEVPNHGDDSRHLGPYIDGESVYYGLINRGKRSIELDLKADEDRAILFQLVKESDVVVENFRPGVTQRLGIDFESLKQHNPKLIYASISGFGQNSPLASYPAYDIVAQAMSGLMSVTGFPETGPTRSGESIGDVCAGMFASWAISSALFARERHGEAAQYIDVAMVDVLLSMQLTGLSNLFANDKAPSLVGNRHPVSTPFDTYQAKDGLVVIAIASEKLFQRFCECMEKPQLCHDPRYGDDPSRTQYQAELRKEIESWTRQKTVEEVCDILLNAGVPASPIHNLHQATQSEHAEVRKVLTYLNDGGTPLVSQPVFFNGNKPHSTRRAPKLGEANLVYKPAKTTIKNAETMQ
>NZ_CP042861.1|WP_004258492.1|3881193_3882333_-|acyl-CoA-dehydrogenase
MSFDINETEQAVVDAVEKVCHDILQPNAQRYDETETFCAESLQALGEMGCWGINLPEQYGGFGIGSVAMSKVVEAVAAACASTSSALTAHFLATDSILIGGTEEQKNHWLPKAAAGELLGAFGLTEPAAGSNPADMRTVAVRENGGWRIRGNKHYITNAKEADFIVLYAKTDVEAGARGISAFMIPKGTEGVAFSQPEKTMGLRGSTIYELALNCWLPESALLGEENKGFHTAMEVLDKGRVEVAATSLGIARAAMESALGWVKERQIGKKPLAAYQGTQWRIADMHTQLEAARMLTWQAAELRDSGERFSLQSATAKLFAAECAGFVTDAALQLHGGYGYIRDLPLERYVRDARILRIFEGTSEIQKIIISRAVLDAH
>NZ_CP042861.1|WP_096864389.1|3879479_3880919_-|cytosine-permease
MTVSNDIATGQKNRQENVPLIEARSIDYIPESERHGTLSSQFTLWFGSNLQITAIVTGALAVVLGGDVFWSLIGLFIGQLLGGAVMALHAVQGPKLGLPQMISSRVQFGVYGAVIPILLVCMMYVGFSASGTVLAGQAVGQLLHVTDWVGIIIFGVVIIGITICGYRIIHILGKVASVIGVITFFYLFFRLFYMNDVSVLLENRHFSWTNFLLAMSLSASWQIAFGPYVADYSRYLPTKTPTIKAFLAVGSGTVIGTQASMILGVFAAALAGNKFAGNEVSYIVGLGSTGLIAALLYISIFYGKVTITALNAYGSFMSMAAIWCGFRGKSQISRGQRLFFIILMVSFSTLLGLAGQHSFLKLFSAFLLFLLAFFTPWSAINLVDYYWVTKGRYDVPELANPNGRYGRWNKVGIFTYIAGVLIQLPFISTGFYTGPLVEKLGGVDISWIVGLVATSILYYVAIKKWPMSVADRLILPTTK
>NZ_CP042861.1|WP_137019286.1|3878571_3879327_-|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MKILVAVKRVIDHNVKIRVKADGSGVELANVKMAINPFDEIAVEEAVRLKEAGKATEVITVSIGDIGYQETLRSAMAIGADRGILVQRSGGVTLEPLDIARLLQQIVEREQPDLILLGKQAIDDDCNQIGQMLSALLDYPQATFASQVKLEGQSLQVTREIDGGLETLEMPLPAVITTDLRLNEPRYATLPNIMKAKKKTLDIIDITDMDFTPLGQIKTLSVSEPKKRAGQCTLLSSATELVSALQAKEVI
>NZ_CP042861.1|WP_004258476.1|3877605_3878556_-|electron-transfer-flavoprotein-subunit-alpha
MSQISVLVVVEHDNQTIKTSTYHSINAAKQLLTAGGHLHLLVAGSETELVAQLAASIKGVSKVLEIQSDNLKNQLAEPMAHAVVNIAEEYTHLLFPATTFGKNIAPRVAAKLGIAQVSDITQVIDSQTFVRPIYAGNALATVQNNGQKVVITVRSSAFSGGYETQNSAEIEKVSLADIPLRSQLKSQSLTQVSRAELSSAKVVISGGRGLSSGENFALLETIADKLGAAVGASRAAVDAGFVPNDYQVGQTGKIVAPDLYIAVGISGAIQHVAGMKESKVIVAINSDPEAPIFQVADYGIVGDLFEILPEFDKALA
>NZ_CP042861.1|WP_110591204.1|3875911_3877594_-|electron-transfer-flavoprotein-ubiquinone-oxidoreductase
MAIDNIEKINEAPERESMEFDVLIVGGGPAGLSAAIRLKQLAAKKGTEISVCLIDKGAQIGAHILSGAVIDPRALDELLPDWQQKVSASLTPVSHDRFLWLKENKASHLPLSLLPNCLKNNGNFIGSLGEISAALAAEAEELGVDVFAGFAATEVLFDDKNQVIGVTTGDMGLDKLGNPTQMYQPGMNLLAKMTFFAEGCRGQLGKQLINHFNLATESGKQTYGLGIKEIWQIPKEQHQAGLVVHSVGWPLDNHTYGGGFAYHYGDNLVAVGLVVGLNYENPYLSPFDEFQRLKTHPAFSDFLSGGERISYGARTMVAGGLAALPELSFPGGVLIGDDAGFLNAARIKGTHCAVKSGLLAAEAWFSANQNGMVDYLQFKKQFRQLFEESWLYQELYQTRNFKPYMKKGLVVGSMLFGAEQLLFKGRTPWTLKLKQSDHEGIKEAKGFTPIDYPKPDGKLTFDKSSSVFLSNTNHEEEQPCHLKLADINVPIQVNLMKYAAPETRYCPAGVYEIVGNKSEEKLQINAQNCLHCKACDIKDPLQNITWTAPQGGEGPIYQGM
>NZ_CP042861.1|WP_004258469.1|3875109_3875823_+|UTRA-domain-containing-protein
MTLQPAYKQIQSYILRSIDLGIFKPETQIPTELELCAQFNVSRMTVNKAISELSQKGILHRIAGKGTFVATQKHELPVTKAFDIFDEISTSGNKYSGHQLQLKIIPASAEIALQLGISEGSDVGYCKVLHFENDIPLMLEERYVNHAIVPDFVKQKYGDTETPSGYLQRHFPVSEMEHTIEAALATKSIAQSLSIKENSPCLQLSRRTWTGNTLISYVNMITAGSRYKLKLHSRIEN
>NZ_CP042861.1|WP_165119765.1|3873579_3874833_-|hypothetical-protein
MRVQYFHVSLTQCDYQNVSPMGMVRLIASQKVFFFNQGDFSNSEIFLERLQQGDTLVICAEEMNDGSYWAEWVYHEKHGRLEPDRTISFNRSLGKQYLISLALMALIPAVYYCFINADDSFLMIILVSLLGCAAFGGIVLFALALAETKHILSPKRKSILKALDLVIDGQYQKSEQEQQIEILGIKSSKNKANKLRKSVDNYRDKASLLVTRGKVNITSTLSLTVARGDAEQKLNHVGLQINKSHMDVLISANEPLFNNHNLFIAQGDELEVFHKNIQAHSKEQVIFGIYNHQDGLAYSLIGKGAPQERGFYFGLWGGICLLLMFFVFMAGGLSISETLEKGGYWDYWDWVNIVDTGVLFISFAVTILFGISFLIALCVAIYFKLSQRGNGYYQAQYILKHLRRKNGQTDYVTEVRS
>NZ_CP042861.1|WP_004258508.1|3886789_3887491_-|high-affinity-branched-chain-amino-acid-ABC-transporter-ATP-binding-protein-LivF
MLEFKKVSTHYGKIQALHEISLNIQKGEIVTLIGANGAGKTTLLSTLCGDPRASEGQVIYRGVDITQLPTSKIMREDIALVPEGRRVFSRMTVEENLAMGGFFADRQQYQERIERVYKLFPRLYERRSQRSGTMSGGEQQMLAIGRALMSQPELLLLDEPSLGLAPIIIMQIFDTIQQLREEGMTIFLVEQNANQALKLADRGYVLENGHIVLEDSGKALLANEAVRSAYLGG
>NZ_CP042861.1|WP_164561281.1|3887490_3888261_-|ABC-transporter-ATP-binding-protein
MTTPLLQVNGLTMRFGGLLAVNNVELTINQGEIVSLIGPNGAGKTTIFNCLTGFYKPTSGTILYREKHLEGLTGQAIARLGVIRTFQHVRLFKEMTVIENLLVAQHQHLKSGIFSGLLKTPAFRRAESEALDNAVKWLERVDLLPFANRQAGNLAYGQQRRLEIARCMVTRPEILMLDEPAAGLNPKETNDLDDLIAELRTHHNVSILLIEHDMKLVMGISDRIYVVNQGTPLANGTPSEIRQHPDVIKAYLGEAY
>NZ_CP042861.1|WP_094961471.1|3888266_3889538_-|high-affinity-branched-chain-amino-acid-ABC-transporter-permease-LivM
MRKENWINAVVASSTFFVLALFMMGLQLALDGTKLIVTVGDSVRWNWIIAGIVVIFVYQLVRPTLSKVWQGVPKKAWAIPDFDGSTTKQKILAVIIIIAAIIWPFIVSRGSVDIATLTLIYVMLGLGLNVVVGLSGLLVLGYAGFYAIGAYTFGLLNHYYGFGFWESLPIAGLTAALAGFLLGFPVLRLRGDYLAIVTLGFGEIVRILLLNNTEITGGPNGISQLPKPTFFGLEFSRTAKEGWDTFHNFFGLDYSPGDRIIFLYFVALLLVVLTLFVINRLLRMPLGRAWEALREDEIACRSLGLSPTRIKLTAFTISAAFAGFAGTLFAARQGFISPESFTFVESAFVLAIVVLGGMGSQTSVILAAIILVVSREMMRDLNQYSMLLLGALMVLMMIWRPQGLLPMKRRQMQVKKVPEGEGV
>NZ_CP042861.1|WP_004258523.1|3889534_3890461_-|high-affinity-branched-chain-amino-acid-ABC-transporter-permease-LivH
MSDQILYFIQQLLNGLTLGSTYALIAIGYTMVYGIIGMINFAHGEVYMIGSYVSFIVIAGLMMLGIDIGWILVAAAFIAAIVVSSAYGWSIERVAYRPVRHSKRLIALISAIGMSIFLQNYVSLSQGSRDLALPSLITGQWVLGESDGFEATVTKMQLTIWVVTVLAMLALTLFIRYSKMGRACRACAEDLKMASLLGINTDRVISLTFVIGAAMAAVAGVLLGQFYGVINPYIGFMAGMKAFTAAVLGGIGSIPGAMLGGLILGVAEAMTSAYLSTEYKDVVSFGLLIGVLLIMPTGILGRPEVEKV
>NZ_CP042861.1|WP_004908157.1|3890563_3891673_-|branched-chain-amino-acid-ABC-transporter-substrate-binding-protein
MKNMNKALLAGCIAMAFSSAGWAKEIKIAVVGAMSGPVAQYGDMEFTGARQAIADINAKGGINGNTLVAVEYDDACDPKQAVAVANKVINDGIRHVIGHLCSSSTQPASDIYEDEGVIMITPAATNADLTTRGYQMVLRTTGLDSDQGPTAAKFIMEDIKPTRIAVVHDKQQYGEGLARSVRESLNKAGVKEVMFEGVTAGDKDFSALVAKLKKENVDFVYFGGYYPEMGQILRQAKQAGLNIRFMGPEGVGNSSLSNIAGDASEGMLVTLPKRYDQVATNQPIVDAIKAKKEDPTGPFVWTTYAAIQGLTTAMERTGSIEPEDLVKDLKANPVETVMGTLSWQPNGDLKGFEFGVFEWHKDGTSTSVK
>NZ_CP042861.1|WP_110591198.1|3892052_3892466_+|aspartate-1-decarboxylase-autocleavage-activator-PanM
MRLTIIPLVNPTEQQYLDLHKIWPDQSPFELAKMCKAGEQFYAARFNDRLLGAAKITVDHSTATLWDFCVREVTRRRGVGSYLLEEICQTIPDITLWKFDISGVARQEKEAMQLFLSANGFNATAQPDIWEKQHEVK
>NZ_CP042861.1|WP_004258531.1|3892452_3892839_+|VOC-family-protein
MKLNKIHHVAIIASNFDVSKDFYCRILGLNLLEEHYRPANNSWKADLAFGEHYQIELFSFVNPPARLSYPEATGLRHLAFGVDDLDKWVAYLTEQGVACEAIRVDPYTQKRFTFFTDPDGLPLELYSD
>NZ_CP042861.1|WP_004258535.1|3892948_3893827_-|RNA-polymerase-sigma-factor-RpoH
MTKDMQSLALVPQGSIEAYVRAANSYPMLTAEEEKELAERLHYHGDLDAAKQLILSHLRFVIHVARSYAGYGLPQADLIQEGNIGLMKAVRRFNPEVGVRLVSFAVHWIKAEIHEYVLRNWRIVKVATTKSQRKLFFNLRKNKKRLGWFNQDEVDMVAQELGVSTKDVREMESRMAAQDMAFDMSDDDDSSDFGGPVAPVLYLQDKASDFAGSIEDDNWESHATDRLADALDSLDERSQDIIRARWLDDDNKTTLQELADKYGVSAERVRQLEKNAMKKLRLAMEEDEDSEM
>NZ_CP042861.1|WP_004258540.1|3894084_3895062_-|cell-division-protein-FtsX
MAKNVRKSKPERAKQSKSKALKGGWKEQWRYSWLNALADMLRQPLATFLTIMVIAISLTLPSLCYIVWKNVSQAAEQWYPTPQLTVYLDKSLDEQGGQNVVTQLQALDGVDHVNYLSRDQAMSEFRSWSGFSTALDMLEENPLPAVAIITPKIDFEGSDVLTTLRDRVSQVDGIEEVRMDDSWFARLAALTGLVGKVASVIGILMIVSLFLVIGNSVRLNIFARRDTINVMKLIGATDGFIMRPFLNGGLVLGALGAIISLIMTFLLVWQLADGVAKVASVFGTQFQIEGLLWEESLLILLLSAMVGWIAAWLATLQHLRHFTPE
>NZ_CP042861.1|WP_004258545.1|3895054_3895720_-|cell-division-ATP-binding-protein-FtsE
MIRFEHVSKAYRGGRQALQGVDFHLQPGEMAFLTGHSGAGKSTLLKLICGIERPSAGHILFNGHDISRLKNREIPFLRRQIGMIFQDHHLLFDRTVYDNVAMPLIISGASTEDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPTMLLADEPTGNLDGELSEGIMRLFEEFNRVGVTVLMATHDIALIERRNYRVLTLSEGRMLGGQHG

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

22976 : 72269

Leptospira_phage(20.0%)

protease,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004906266.1\|22976_23552_+\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_110592762.1\|23718_26232_+	penicillin acylase	NA	NA	NA	NA
WP_096863658.1\|26269_26932_-	transcriptional regulator	NA	NA	NA	NA
WP_110592761.1\|27006_28416_+	MFS transporter	NA	NA	NA	NA
WP_110592760.1\|28464_29961_-	MFS transporter	NA	NA	NA	NA
WP_110592759.1\|30056_30596_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_137018850.1\|30662_31460_+	hypothetical protein	NA	NA	NA	NA
WP_001353740.1\|32136_32376_+	DUF1819 family protein	NA	NA	NA	NA
WP_070342364.1\|33926_34772_+	lincosamide nucleotidyltransferase Lnu(F)	NA	NA	NA	NA
WP_000777554.1\|34768_35242_+	trimethoprim-resistant dihydrofolate reductase DfrA1	A0A140HLG8	Bacillus_phage	1.6e-19	34.4
WP_001206316.1\|35258_36050_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1	NA	NA	NA	NA
WP_000679427.1\|36213_36561_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259031.1\|36554_37394_+	sulfonamide-resistant dihydropteroate synthase Sul1	NA	NA	NA	NA
WP_000050481.1\|37798_39340_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_165119627.1\|39550_40408_+	twin-arginine translocation (TAT) pathway signal sequence domain protein	NA	NA	NA	NA
WP_004201168.1\|40418_41057_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA
WP_004201167.1\|41061_41427_-	bleomycin binding protein Ble-MBL	NA	NA	NA	NA
WP_004201164.1\|41430_42243_-	subclass B1 metallo-beta-lactamase NDM-1	NA	NA	NA	NA
WP_000050481.1\|43452_44994_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_165119627.1\|45204_46062_+	twin-arginine translocation (TAT) pathway signal sequence domain protein	NA	NA	NA	NA
WP_004201168.1\|46072_46711_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA
WP_004201167.1\|46715_47081_-	bleomycin binding protein Ble-MBL	NA	NA	NA	NA
WP_004201164.1\|47084_47897_-	subclass B1 metallo-beta-lactamase NDM-1	NA	NA	NA	NA
WP_000050481.1\|49106_50648_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_000359986.1\|52046_52820_+	ArmA family 16S rRNA (guanine(1405)-N(7))-methyltransferase	NA	NA	NA	NA
WP_077252464.1\|52800_53082_-	hypothetical protein	NA	NA	NA	NA
WP_002026779.1\|53301_53487_-	hypothetical protein	NA	NA	NA	NA
WP_002001451.1\|53535_54720_+\|transposase	IS4-like element ISEc29 family transposase	A0A0F7LAS3	uncultured_marine_virus	4.5e-50	35.4
WP_000052512.1\|55118_56594_+	ABC-F type ribosomal protection protein Msr(E)	A0A1B0RXA0	Streptococcus_phage	2.3e-160	59.0
WP_000155092.1\|56649_57534_+	Mph(E) family macrolide 2'-phosphotransferase	NA	NA	NA	NA
WP_000753551.1\|58177_59737_-\|transposase	IS66-like element ISAba24 family transposase	S5VTD3	Leptospira_phage	4.0e-70	34.2
WP_000781558.1\|59829_60186_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	1.6e-22	45.9
WP_000555098.1\|60188_60473_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_001067858.1\|61748_62453_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_000018326.1\|62706_63522_+	aminoglycoside O-phosphotransferase APH(3')-Ia	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	4.3e-161	98.5
WP_001067855.1\|63711_64416_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_071538080.1\|64440_66015_+	PAS domain-containing protein	A0A1B0V854	Salmonella_phage	2.8e-87	99.4
WP_137018855.1\|69464_70270_-\|transposase	IS5 family transposase	A0A0M5M147	Mycobacterium_phage	4.5e-33	36.7
WP_001029679.1\|71447_72269_-\|transposase	heteromeric transposase endonuclease subunit TnsA	NA	NA	NA	NA

DBSCAN-SWA_2

1305320 : 1315461

Morganella_phage(42.86%)

integrase

attL 1306557:1306573|attR 1319020:1319036

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096863250.1\|1305320_1306178_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	9.3e-29	33.8
1306557:1306573	attL	NA	NA	NA	NA
WP_110592235.1\|1306607_1307819_+\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	6.5e-129	55.7
WP_110592234.1\|1308033_1308759_+	hypothetical protein	NA	NA	NA	NA
WP_110592233.1\|1308879_1309098_+	AlpA family transcriptional regulator	A0A2H4J8C8	uncultured_Caudovirales_phage	3.3e-07	45.3
WP_110592232.1\|1309097_1309490_+	hypothetical protein	A0A1W6JPH9	Morganella_phage	5.0e-30	51.4
WP_110592230.1\|1309801_1310596_+	phage antirepressor Ant	A0A0R6PJV6	Moraxella_phage	2.4e-23	55.6
WP_110592229.1\|1310696_1310888_-	hypothetical protein	NA	NA	NA	NA
WP_137018915.1\|1310886_1311234_+	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
WP_110592227.1\|1311226_1311421_+	hypothetical protein	NA	NA	NA	NA
WP_110592226.1\|1311413_1311620_+	hypothetical protein	NA	NA	NA	NA
WP_110592225.1\|1311612_1311810_+	hypothetical protein	A0A1W6JPF0	Morganella_phage	5.4e-09	66.0
WP_110592224.1\|1311797_1312106_+	hypothetical protein	NA	NA	NA	NA
WP_110592223.1\|1312105_1312648_+	hypothetical protein	NA	NA	NA	NA
WP_110592222.1\|1312743_1315461_+	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	0.0e+00	69.0
1319020:1319036	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1648955 : 1698777

Pectobacterium_phage(17.95%)

head,holin,tRNA,lysis,tail,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004261480.1\|1648955_1649405_+\|lysis	lysis protein	A0A1P8DTG0	Proteus_phage	1.8e-31	55.9
WP_110592098.1\|1650235_1652131_+	bifunctional glutathionylspermidine amidase/synthase	NA	NA	NA	NA
WP_004261473.1\|1652470_1652602_-	entericidin A/B family lipoprotein	NA	NA	NA	NA
WP_004261469.1\|1653002_1653518_+	membrane protein	A0A1W6JNX6	Morganella_phage	1.9e-82	83.0
WP_137018936.1\|1655198_1656350_-	hypothetical protein	NA	NA	NA	NA
WP_110592095.1\|1656543_1657725_-	DUF3596 domain-containing protein	I6PDJ1	Cronobacter_phage	2.4e-152	69.0
WP_068445436.1\|1657679_1657889_-	excisionase	I6PBM8	Cronobacter_phage	6.8e-18	60.9
WP_110592094.1\|1657933_1658140_-	hypothetical protein	H9C154	Pectobacterium_phage	2.2e-05	45.8
WP_110592093.1\|1658582_1658762_-	hypothetical protein	NA	NA	NA	NA
WP_042844832.1\|1658806_1659307_-	siphovirus Gp157 family protein	H9C156	Pectobacterium_phage	2.7e-52	66.3
WP_110592092.1\|1659306_1661271_-	hypothetical protein	H9C157	Pectobacterium_phage	4.3e-122	38.1
WP_110592091.1\|1661283_1661616_-	hypothetical protein	NA	NA	NA	NA
WP_165119783.1\|1662251_1662671_-	hypothetical protein	NA	NA	NA	NA
WP_110592089.1\|1663036_1664194_-	type I restriction endonuclease subunit R	A0A1S5SAB0	Streptococcus_phage	2.9e-33	27.8
WP_110592088.1\|1664203_1664896_-	helix-turn-helix transcriptional regulator	M9NZE3	Enterobacteria_phage	1.1e-67	54.9
WP_110592087.1\|1665000_1665210_+	helix-turn-helix transcriptional regulator	Q716D6	Shigella_phage	7.5e-17	64.2
WP_110592086.1\|1665281_1665737_+\|tRNA	tRNA-(guanine-N1)-methyltransferase	H9C162	Pectobacterium_phage	6.0e-27	51.4
WP_110592085.1\|1665754_1665979_+	hypothetical protein	H9C163	Pectobacterium_phage	1.1e-13	51.4
WP_165119670.1\|1666933_1667671_+	DNA replication protein	A0A2H4J1B6	uncultured_Caudovirales_phage	5.1e-36	40.9
WP_110592081.1\|1667901_1668132_+	hypothetical protein	NA	NA	NA	NA
WP_165119672.1\|1668245_1668416_+	hypothetical protein	NA	NA	NA	NA
WP_110592080.1\|1668452_1668794_+	hypothetical protein	H9C172	Pectobacterium_phage	5.5e-33	61.3
WP_110592079.1\|1668815_1669703_+	hypothetical protein	NA	NA	NA	NA
WP_110592078.1\|1669809_1670403_+	DUF1367 family protein	H9C173	Pectobacterium_phage	8.8e-63	57.7
WP_110592077.1\|1670414_1670729_+	DUF968 domain-containing protein	A0A1I9KFA7	Aeromonas_phage	1.2e-34	69.8
WP_110592076.1\|1670716_1671250_+	antiterminator	Q5TJL7	Enterobacteria_phage	2.6e-37	55.1
WP_110592075.1\|1671443_1672628_+	hypothetical protein	NA	NA	NA	NA
WP_110592074.1\|1672754_1672955_+\|holin	holin	A0A1W6JNY9	Morganella_phage	1.7e-18	70.2
WP_110592073.1\|1672935_1673427_+	lysozyme	A0A1R3Y5W5	Salmonella_virus	7.6e-52	61.6
WP_110592072.1\|1673471_1674023_-	hypothetical protein	NA	NA	NA	NA
WP_165119674.1\|1674109_1674283_+	hypothetical protein	NA	NA	NA	NA
WP_110592071.1\|1674291_1674753_+\|lysis	lysis protein	A0A2H4JHL8	uncultured_Caudovirales_phage	3.8e-13	44.0
WP_048607741.1\|1675606_1675738_-	entericidin A/B family lipoprotein	NA	NA	NA	NA
WP_048607740.1\|1676139_1676382_+	hypothetical protein	NA	NA	NA	NA
WP_110592070.1\|1676786_1677059_+	hypothetical protein	NA	NA	NA	NA
WP_110592069.1\|1677140_1678169_+\|terminase	terminase small subunit	C5IHM0	Burkholderia_virus	5.0e-37	40.6
WP_110592068.1\|1678165_1678801_-	response regulator	NA	NA	NA	NA
WP_110592067.1\|1679039_1680437_+\|terminase	phage terminase large subunit	A0A2K9V3I6	Faecalibacterium_phage	3.0e-85	40.3
WP_110592066.1\|1680441_1681944_+	DUF1073 domain-containing protein	A0A2H4P6S9	Pseudomonas_phage	6.9e-104	44.2
WP_110592065.1\|1681981_1682710_+\|head	phage head morphogenesis protein	Q6IWU3	Burkholderia_phage	3.5e-37	39.4
WP_110592064.1\|1682706_1683963_+	DUF2213 domain-containing protein	A0A2H5BG39	Pseudoalteromonas_phage	1.6e-37	45.6
WP_110592063.1\|1683962_1684460_+	hypothetical protein	NA	NA	NA	NA
WP_042844781.1\|1684459_1685527_+	DUF2184 domain-containing protein	A0A088C493	Shewanella_sp._phage	4.4e-52	36.6
WP_105881054.1\|1685581_1685923_+	hypothetical protein	Q6IWU7	Burkholderia_phage	1.0e-07	34.5
WP_110592606.1\|1685925_1686357_+	DUF4054 domain-containing protein	Q6IWU8	Burkholderia_phage	2.0e-11	33.8
WP_110592062.1\|1686356_1686815_+	hypothetical protein	A0A2H4J488	uncultured_Caudovirales_phage	7.7e-06	31.0
WP_110592061.1\|1686814_1687183_+	hypothetical protein	NA	NA	NA	NA
WP_110592060.1\|1687172_1687688_+	hypothetical protein	NA	NA	NA	NA
WP_110592059.1\|1687697_1689185_+	DUF3383 domain-containing protein	A0A088C3U1	Shewanella_sp._phage	2.0e-79	37.0
WP_068445366.1\|1689194_1689647_+	hypothetical protein	I7ATP4	Escherichia_phage	1.8e-23	38.9
WP_109911397.1\|1689697_1690156_+	hypothetical protein	Q6IWV4	Burkholderia_phage	3.7e-24	47.7
WP_110592605.1\|1690622_1692749_+	hypothetical protein	A0A2H5BG44	Pseudoalteromonas_phage	3.0e-20	26.8
WP_110592058.1\|1692745_1693273_+	hypothetical protein	NA	NA	NA	NA
WP_096863415.1\|1693276_1693570_+	hypothetical protein	NA	NA	NA	NA
WP_110592057.1\|1693562_1694378_+	hypothetical protein	B5M9T8	Pseudomonas_phage	6.3e-19	28.5
WP_110592056.1\|1694381_1695074_+	hypothetical protein	A0A2H4P6V3	Pseudomonas_phage	1.4e-30	40.8
WP_110592055.1\|1695070_1695415_+	hypothetical protein	Q6IWQ2	Burkholderia_phage	2.4e-12	36.6
WP_110592054.1\|1695407_1696595_+	hypothetical protein	A0A2H5BG53	Pseudoalteromonas_phage	2.2e-76	38.9
WP_110592053.1\|1696591_1697251_+	DUF2612 domain-containing protein	Q6IWQ4	Burkholderia_phage	2.1e-41	41.3
WP_110592052.1\|1697256_1698777_+\|tail	phage tail protein	A0A0F6R6B6	Escherichia_coli_O157_typing_phage	5.1e-30	40.6

DBSCAN-SWA_4

2884034 : 2900599

Morganella_phage(75.0%)

integrase

attL 2877720:2877747|attR 2900686:2900713

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2877720:2877747	attL	NA	NA	NA	NA
WP_137019055.1\|2884034_2887376_-	hypothetical protein	A0A1W6JNU2	Morganella_phage	8.9e-35	27.8
WP_102139348.1\|2887389_2887728_-	hypothetical protein	NA	NA	NA	NA
WP_004255410.1\|2887727_2887901_-	hypothetical protein	NA	NA	NA	NA
WP_137019058.1\|2888084_2888618_-	hypothetical protein	NA	NA	NA	NA
WP_137019060.1\|2888695_2888914_-	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_137019364.1\|2888926_2889319_-	ProQ/FinO family protein	A0A1W6JPI6	Morganella_phage	3.7e-17	66.7
WP_137019062.1\|2889787_2892505_-	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	0.0e+00	69.6
WP_137019064.1\|2892501_2892846_-	hypothetical protein	A0A1W6JPD8	Morganella_phage	1.1e-46	75.4
WP_137019066.1\|2892860_2893457_-	hypothetical protein	NA	NA	NA	NA
WP_137019068.1\|2893453_2893675_-	hypothetical protein	A0A286S2B3	Klebsiella_phage	1.1e-07	39.2
WP_137019070.1\|2893674_2893863_-	hypothetical protein	NA	NA	NA	NA
WP_004265069.1\|2893862_2894036_-	hypothetical protein	NA	NA	NA	NA
WP_137019073.1\|2894032_2894617_-	ORF6N domain-containing protein	A0A1B5FPC0	Escherichia_phage	3.1e-28	58.0
WP_036960437.1\|2894613_2894820_-	hypothetical protein	NA	NA	NA	NA
WP_137019076.1\|2894816_2894996_-	hypothetical protein	NA	NA	NA	NA
WP_137019079.1\|2894992_2895190_-	hypothetical protein	A0A1W6JPD9	Morganella_phage	1.5e-11	55.4
WP_004255438.1\|2895186_2895447_-	hypothetical protein	NA	NA	NA	NA
WP_137019081.1\|2895449_2895623_-	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_165119730.1\|2895615_2896824_-	host cell division inhibitor Icd-like protein	A0A1W6JPK3	Morganella_phage	8.8e-25	30.9
WP_137019086.1\|2896825_2897521_-	Rha family transcriptional regulator	A0A0S2SYC0	Pseudomonas_phage	3.3e-08	37.1
WP_137019088.1\|2897535_2897943_-	hypothetical protein	A0A1W6JPH9	Morganella_phage	4.0e-38	56.6
WP_004264148.1\|2897942_2898188_-	AlpA family phage regulatory protein	A0A1W6JPE9	Morganella_phage	2.2e-23	71.4
WP_137019090.1\|2898295_2899246_-	hypothetical protein	NA	NA	NA	NA
WP_137019366.1\|2899339_2900599_-\|integrase	site-specific integrase	A0A1W6JPG6	Morganella_phage	3.5e-141	56.5
2900686:2900713	attR	NA	NA	NA	NA

DBSCAN-SWA_5

3124147 : 3136190

Morganella_phage(66.67%)

integrase

attL 3128201:3128215|attR 3140241:3140255

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_137019107.1\|3124147_3124585_-	ProQ/FinO family protein	A0A1W6JPI6	Morganella_phage	1.4e-17	68.2
WP_137019109.1\|3124589_3125084_-	hypothetical protein	NA	NA	NA	NA
WP_165119736.1\|3125242_3125380_-	hypothetical protein	NA	NA	NA	NA
WP_137019111.1\|3125403_3128151_-	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	8.4e-233	47.7
WP_137019113.1\|3128147_3128492_-	hypothetical protein	A0A1W6JPD8	Morganella_phage	1.4e-47	76.3
3128201:3128215	attL	NA	NA	NA	NA
WP_137019115.1\|3128506_3129103_-	hypothetical protein	NA	NA	NA	NA
WP_137019118.1\|3129102_3129288_-	hypothetical protein	NA	NA	NA	NA
WP_165119738.1\|3129287_3129461_-	hypothetical protein	NA	NA	NA	NA
WP_004255428.1\|3129457_3130039_-	ORF6N domain-containing protein	A0A1B5FPC0	Escherichia_phage	5.7e-30	60.7
WP_105880952.1\|3130035_3130245_-	hypothetical protein	A0A1W6JPF1	Morganella_phage	1.4e-10	49.3
WP_004255431.1\|3130241_3130421_-	hypothetical protein	NA	NA	NA	NA
WP_004255433.1\|3130417_3130579_-	hypothetical protein	NA	NA	NA	NA
WP_165119740.1\|3130575_3130770_-	hypothetical protein	A0A1W6JPD9	Morganella_phage	2.0e-11	57.1
WP_004265088.1\|3130772_3130946_-	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_165119742.1\|3130938_3131163_-	host cell division inhibitor Icd-like protein	A0A1W6JPK3	Morganella_phage	4.0e-08	49.2
WP_071585908.1\|3131263_3131479_+	hypothetical protein	A0A2H4JB52	uncultured_Caudovirales_phage	1.8e-10	54.2
WP_137019124.1\|3132185_3132794_-	antirepressor protein	A0A1W6JPH8	Morganella_phage	4.3e-73	70.3
WP_094960712.1\|3132806_3133202_-	hypothetical protein	A0A1W6JPH9	Morganella_phage	7.8e-31	52.1
WP_036951665.1\|3133201_3133420_-	AlpA family transcriptional regulator	A0A2H4J8C8	uncultured_Caudovirales_phage	6.6e-08	45.3
WP_137019126.1\|3133710_3134439_-	hypothetical protein	NA	NA	NA	NA
WP_137019128.1\|3134451_3134766_-	hypothetical protein	NA	NA	NA	NA
WP_137019130.1\|3134978_3136190_-\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	4.8e-132	57.8
3140241:3140255	attR	NA	NA	NA	NA

DBSCAN-SWA_6

3210880 : 3259927

Salmonella_phage(22.92%)

integrase,capsid,terminase,lysis

attL 3235963:3235978|attR 3268144:3268159

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_137019136.1\|3210880_3212812_+	type I secretion system permease/ATPase	W8CYL7	Bacillus_phage	9.7e-42	27.1
WP_137019138.1\|3212975_3213206_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	4.0e-19	60.9
WP_137019140.1\|3213202_3216604_-	right-handed parallel beta-helix repeat-containing protein	A0A291AXF7	Shigella_phage	8.0e-07	50.9
WP_137019142.1\|3216663_3219138_-	MoaD/ThiS family protein	F1C5A7	Cronobacter_phage	5.1e-229	48.3
WP_136135588.1\|3219124_3219517_-	NlpC/P60 family protein	F1C5F2	Cronobacter_phage	3.0e-43	56.5
WP_137019144.1\|3219516_3219984_-	DUF1833 family protein	F1C5F1	Cronobacter_phage	1.1e-39	52.3
WP_137019146.1\|3219980_3220466_-	hypothetical protein	F1C5F0	Cronobacter_phage	2.6e-60	68.9
WP_137019148.1\|3220475_3223688_-	tape measure protein	A0A1W6JNU2	Morganella_phage	3.7e-30	28.4
WP_137019150.1\|3223755_3224100_-	hypothetical protein	NA	NA	NA	NA
WP_165119744.1\|3224159_3224399_-	hypothetical protein	NA	NA	NA	NA
WP_165119746.1\|3224397_3224787_+	hypothetical protein	NA	NA	NA	NA
WP_136135574.1\|3224892_3225675_-	ORF6N domain-containing protein	H6WRU9	Salmonella_phage	9.9e-46	43.2
WP_136135573.1\|3225739_3226276_-	Bro-N domain-containing protein	A0A0P0J0J7	Acinetobacter_phage	1.6e-26	54.3
WP_137019154.1\|3226361_3226538_-	Arc family DNA binding domain-containing protein	G9L6D7	Escherichia_phage	1.4e-13	67.3
WP_137019156.1\|3226668_3227112_+	Arc family DNA-binding protein	G9L6D6	Escherichia_phage	2.3e-23	52.2
WP_137019158.1\|3227133_3227793_+	DUF4145 domain-containing protein	M1PSB6	Streptococcus_phage	3.3e-26	30.8
WP_137019160.1\|3227837_3228101_-	hypothetical protein	NA	NA	NA	NA
WP_137019162.1\|3228104_3228794_-	hypothetical protein	A0A1W6JNX2	Morganella_phage	2.3e-62	55.2
WP_137019165.1\|3228843_3229584_-	Ig domain-containing protein	G0ZNE6	Cronobacter_phage	2.3e-52	47.6
WP_137019168.1\|3229645_3230014_-	hypothetical protein	NA	NA	NA	NA
WP_137019170.1\|3230010_3230448_-	HK97 gp10 family phage protein	A0A1V0E5P5	Salmonella_phage	3.2e-33	56.8
WP_137019174.1\|3230449_3230818_-	hypothetical protein	A0A1V0E5P3	Salmonella_phage	2.6e-36	63.1
WP_137019176.1\|3230814_3231216_-	hypothetical protein	G0ZNE1	Cronobacter_phage	3.9e-54	77.4
WP_137019178.1\|3231272_3231530_-	hypothetical protein	A0A1V0E5P8	Salmonella_phage	5.6e-14	51.7
WP_137019180.1\|3231541_3232660_-	hypothetical protein	G0ZND9	Cronobacter_phage	1.1e-119	56.4
WP_137019183.1\|3232675_3233113_-	hypothetical protein	I6S1Q2	Salmonella_phage	7.0e-49	72.6
WP_137019187.1\|3233112_3234387_-	hypothetical protein	G0ZND7	Cronobacter_phage	8.9e-153	64.2
WP_137019189.1\|3234389_3235319_-\|capsid	minor capsid protein	A0A1V0E5Q2	Salmonella_phage	1.9e-88	55.0
WP_137019191.1\|3235254_3236625_-	DUF1073 domain-containing protein	H6WRT0	Salmonella_phage	6.6e-170	66.6
3235963:3235978	attL	NA	NA	NA	NA
WP_137019194.1\|3236628_3238104_-	DNA-packaging protein	G0ZND4	Cronobacter_phage	5.9e-241	84.7
WP_137019196.1\|3238090_3238519_-\|terminase	terminase small subunit	E5AGA2	Erwinia_phage	6.0e-37	66.4
WP_137019198.1\|3238573_3238834_-	DUF2560 family protein	NA	NA	NA	NA
WP_137019200.1\|3239001_3239418_-	hypothetical protein	NA	NA	NA	NA
WP_137019202.1\|3239450_3239807_-	hypothetical protein	NA	NA	NA	NA
WP_137019370.1\|3239787_3240570_-	DNA-binding protein	K7PH51	Enterobacterial_phage	1.2e-51	43.2
WP_165119748.1\|3241033_3241195_-	hypothetical protein	NA	NA	NA	NA
WP_137019204.1\|3241191_3241641_-\|lysis	lysis protein	A0A1P8DTG0	Proteus_phage	6.5e-34	53.7
WP_137019206.1\|3241637_3242030_-	M15 family metallopeptidase	E7C9S9	Salmonella_phage	2.2e-54	82.2
WP_137019208.1\|3241992_3242295_-	hypothetical protein	NA	NA	NA	NA
WP_071548375.1\|3242291_3242705_-	hypothetical protein	NA	NA	NA	NA
WP_042848065.1\|3243051_3243444_-	hypothetical protein	F1C5D0	Cronobacter_phage	8.5e-14	35.0
WP_137019210.1\|3243635_3243827_-	protein ninH	A0A088CC23	Shigella_phage	4.0e-09	58.5
WP_137019212.1\|3243816_3244182_-	RusA family crossover junction endodeoxyribonuclease	E5AGG1	Erwinia_phage	2.1e-43	71.2
WP_137019214.1\|3244178_3244469_-	DUF1364 domain-containing protein	A0A220NQY2	Salmonella_phage	1.0e-35	78.1
WP_137019216.1\|3244544_3244919_-	hypothetical protein	NA	NA	NA	NA
WP_137019218.1\|3245040_3245235_-	hypothetical protein	NA	NA	NA	NA
WP_137019220.1\|3245231_3245705_-	recombination protein NinB	Q8VNP6	Enterobacteria_phage	4.2e-39	53.8
WP_137019222.1\|3245713_3245965_-	DUF4752 family protein	T1S9K2	Salmonella_phage	3.7e-10	40.8
WP_137019224.1\|3245957_3246215_-	hypothetical protein	A0A1P8DTF4	Proteus_phage	2.2e-42	91.7
WP_137019227.1\|3246204_3246378_-	hypothetical protein	NA	NA	NA	NA
WP_137019229.1\|3246374_3246602_-	hypothetical protein	NA	NA	NA	NA
WP_137019231.1\|3246598_3246799_-	hypothetical protein	NA	NA	NA	NA
WP_137019233.1\|3247097_3247328_-	hypothetical protein	NA	NA	NA	NA
WP_137019235.1\|3247353_3248082_-	ATP-binding protein	A0A1W6JP39	Morganella_phage	2.5e-99	75.6
WP_165119750.1\|3248081_3248789_-	helix-turn-helix domain-containing protein	Q8HA96	Salmonella_phage	3.5e-34	77.8
WP_137019237.1\|3248785_3249475_-	phage regulatory protein/antirepressor Ant	A0A1P8DTE1	Proteus_phage	8.0e-108	89.1
WP_137019239.1\|3249496_3249841_-	hypothetical protein	NA	NA	NA	NA
WP_131679866.1\|3249949_3250135_-	hypothetical protein	A5VW97	Enterobacteria_phage	1.2e-10	52.5
WP_131679865.1\|3250215_3250863_+	LexA family transcriptional regulator	K7PM82	Enterobacteria_phage	2.1e-78	65.4
WP_165119752.1\|3251245_3251560_+	hypothetical protein	NA	NA	NA	NA
WP_137019241.1\|3252077_3252332_+	hypothetical protein	NA	NA	NA	NA
WP_137019243.1\|3252720_3253065_+	hypothetical protein	NA	NA	NA	NA
WP_137019246.1\|3253094_3253328_+	hypothetical protein	A0A2H4JA69	uncultured_Caudovirales_phage	1.9e-05	43.2
WP_137019248.1\|3253329_3253590_+	hypothetical protein	NA	NA	NA	NA
WP_165119754.1\|3253654_3253810_+	hypothetical protein	NA	NA	NA	NA
WP_048606419.1\|3253806_3254073_+	hypothetical protein	NA	NA	NA	NA
WP_137019250.1\|3254069_3254285_+	hypothetical protein	NA	NA	NA	NA
WP_137019252.1\|3254299_3255034_+	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	2.5e-67	68.7
WP_137019254.1\|3254993_3255629_+	exonuclease	A0A0S2SY31	Pseudomonas_phage	6.8e-53	55.8
WP_137019256.1\|3255628_3256321_+	HNH endonuclease	Q8SCL6	Pseudomonas_phage	4.3e-08	61.2
WP_165119756.1\|3256298_3256703_+	single-stranded DNA-binding protein	A0A218MNB4	uncultured_virus	3.4e-05	35.9
WP_165119758.1\|3256765_3256927_+	hypothetical protein	C8XUQ9	Shigella_phage	3.9e-13	68.1
WP_137019260.1\|3256977_3257301_+	hypothetical protein	NA	NA	NA	NA
WP_137019262.1\|3257300_3257561_+	hypothetical protein	NA	NA	NA	NA
WP_137019264.1\|3257718_3257898_+	hypothetical protein	NA	NA	NA	NA
WP_137019266.1\|3257890_3258268_+	hypothetical protein	NA	NA	NA	NA
WP_137019268.1\|3258880_3259927_+\|integrase	site-specific integrase	G8C7S0	Escherichia_phage	5.8e-57	36.3
3268144:3268159	attR	NA	NA	NA	NA

DBSCAN-SWA_7

3540849 : 3551430

Mycobacterium_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_094961795.1\|3540849_3542061_+	D-alanyl-D-alanine carboxypeptidase DacA	B6DZZ7	Stx2-converting_phage	2.3e-105	49.3
WP_004257083.1\|3542211_3542475_+	YbeD family protein	NA	NA	NA	NA
WP_036957959.1\|3542690_3543320_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA
WP_004257088.1\|3543443_3544409_+	lipoyl synthase	NA	NA	NA	NA
WP_004257099.1\|3544552_3544762_-	transcription antiterminator/RNA stability regulator CspE	A0A1W6JNX5	Morganella_phage	3.5e-22	78.1
WP_004257101.1\|3544978_3545437_-	methylated-DNA--[protein]-cysteine S-methyltransferase	A0A2K9L300	Tupanvirus	7.1e-20	46.7
WP_036957963.1\|3545725_3545953_+	glutaredoxin-like protein NrdH	V5UN81	Mycobacterium_phage	3.6e-17	56.2
WP_004257105.1\|3545961_3546375_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A142F1R4	Bacillus_phage	1.4e-11	33.9
WP_110591306.1\|3546386_3548519_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	3.4e-205	51.0
WP_094961793.1\|3548531_3549503_+	class 1b ribonucleoside-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	2.1e-133	71.9
WP_110591305.1\|3550230_3551430_+	glycine betaine/L-proline ABC transporter ATP-binding protein ProV	G3M9Y6	Bacillus_virus	2.6e-29	38.5

DBSCAN-SWA_8

4554876 : 4563513

Synechococcus_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_110592805.1\|4554876_4555983_+	GDP-mannose 4,6-dehydratase	M4QRT5	Synechococcus_phage	5.0e-128	63.9
WP_110592804.1\|4555993_4556956_+	GDP-L-fucose synthase	A0A0E3HIR9	Synechococcus_phage	1.6e-82	51.5
WP_110592803.1\|4556970_4557447_+	GDP-mannose mannosyl hydrolase	NA	NA	NA	NA
WP_110592802.1\|4557453_4558860_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	1.4e-50	30.7
WP_110592801.1\|4558859_4559606_+	glycosyltransferase	A0A1V0SAH6	Catovirus	2.8e-05	36.0
WP_110592800.1\|4559605_4561042_+	phosphomannomutase	NA	NA	NA	NA
WP_008914069.1\|4561267_4561564_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_071547801.1\|4561605_4561905_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	3.7e-17	47.3
WP_137018908.1\|4561989_4563513_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	1.3e-78	38.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP042861

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection