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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP049256 Microbacterium sp. 4R-513 chromosome, complete genome 6 crisprs csa3,WYL,Cas9_archaeal,cas3,DEDDh 1 1 2 0

Results visualization

1. NZ_CP049256
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP049256_1 234089-234338 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP049256_2 1470626-1470706 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP049256_3 1661400-1661518 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP049256_4 2399745-2399847 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP049256_5 2606164-2606380 TypeII NA
3 spacers
Cas9_archaeal

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP049256_6 2846872-2846977 Unclear NA
1 spacers
cas3

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP049256_5 5.3|2606321|38|NZ_CP049256|CRT 2606321-2606358 38 NZ_CP049256.1 2606345-2606382 2 0.947

1. spacer 5.3|2606321|38|NZ_CP049256|CRT matches to position: 2606345-2606382, mismatch: 2, identity: 0.947

tccgacgacgacctcgacgacgactccgacggcgacct	CRISPR spacer
tccgacggcgacctcgacgacgactccgatggcgacct	Protospacer
*******.*********************.********

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP049256_5 5.3|2606321|38|NZ_CP049256|CRT 2606321-2606358 38 MK967384 Gordonia phage Sidious, complete genome 38174-38211 7 0.816
NZ_CP049256_5 5.3|2606321|38|NZ_CP049256|CRT 2606321-2606358 38 NZ_CP031166 Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence 406377-406414 8 0.789
NZ_CP049256_5 5.3|2606321|38|NZ_CP049256|CRT 2606321-2606358 38 NZ_CP049751 Rhodococcus fascians A21d2 plasmid unnamed2, complete sequence 35154-35191 9 0.763

1. spacer 5.3|2606321|38|NZ_CP049256|CRT matches to MK967384 (Gordonia phage Sidious, complete genome) position: , mismatch: 7, identity: 0.816

tccgacgacgacctcgacgacgactccgacggcgacct---	CRISPR spacer
accgacaacgacctcgacgacgagtccga---cgacccgga	Protospacer
 *****.**************** *****   *****.   

2. spacer 5.3|2606321|38|NZ_CP049256|CRT matches to NZ_CP031166 (Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence) position: , mismatch: 8, identity: 0.789

tccgacgacgacctcgacgacgactccgacggc---gacct	CRISPR spacer
aacgacgacgacctcgatgacgacttcgacgccccgga---	Protospacer
  ***************.*******.***** *   **   

3. spacer 5.3|2606321|38|NZ_CP049256|CRT matches to NZ_CP049751 (Rhodococcus fascians A21d2 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.763

tccgacgacgacctcgacgacgactccgacggcgacct	CRISPR spacer
gtcggcgacgacctcgacgacgactacgacgaggtcgc	Protospacer
 .**.******************** *****. * * .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 306713 : 313443 7 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_2 961302 : 968665 7 Pandoravirus(16.67%) protease,tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage