CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP034322	Klebsiella pneumoniae strain 33 plasmid pK033_1, complete sequence	0 crisprs	NA	0	0	2	0
NZ_CP034321	Klebsiella pneumoniae strain 33 chromosome, complete genome	2 crisprs	csa3,cas3,DEDDh,DinG,WYL,RT	0	0	6	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

9890 : 49779

Salmonella_phage(36.84%)

protease,transposase,integrase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001138014.1\|9890_12857_-\|transposase	Tn3-like element TnAs1 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	100.0
WP_032446871.1\|12860_13343_-	recombinase family protein	A0A1B0V7I5	Salmonella_phage	9.7e-60	100.0
WP_001067855.1\|13418_14123_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_164943496.1\|14128_14530_+	recombinase family protein	A0A1V0E035	Clostridioides_phage	2.0e-05	42.5
WP_113684569.1\|14683_15115_+	excisionase family DNA-binding protein	NA	NA	NA	NA
WP_113613525.1\|15137_15542_+	hypothetical protein	NA	NA	NA	NA
WP_087799092.1\|16258_16642_+	hypothetical protein	NA	NA	NA	NA
WP_133259460.1\|17338_17545_+	DNA-binding protein	NA	NA	NA	NA
WP_133259461.1\|17537_17918_+	hypothetical protein	NA	NA	NA	NA
WP_113613526.1\|17989_19099_+	hypothetical protein	NA	NA	NA	NA
WP_113613527.1\|20327_20648_-	hypothetical protein	NA	NA	NA	NA
WP_164943497.1\|21185_21425_+	recombinase family protein	A0A1V0E035	Clostridioides_phage	7.8e-10	44.6
WP_001067855.1\|21471_22176_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001044210.1\|22181_22322_+	hypothetical protein	NA	NA	NA	NA
WP_000743213.1\|23541_23766_+	hypothetical protein	NA	NA	NA	NA
WP_001120888.1\|23976_25470_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_001445143.1\|25500_25752_+	hypothetical protein	NA	NA	NA	NA
WP_000251875.1\|25645_25948_-	phosphoglucosamine mutase	NA	NA	NA	NA
WP_001043260.1\|26034_26850_-	sulfonamide-resistant dihydropteroate synthase Sul2	A0A0B5J4J5	Pandoravirus	5.9e-09	27.6
WP_000954592.1\|27179_27356_+	DUF4102 domain-containing protein	T1S9J3	Salmonella_phage	1.0e-06	68.6
WP_000427619.1\|27537_28542_-\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_001138070.1\|28620_31587_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	72.9
WP_109217573.1\|31589_32063_-	recombinase family protein	A0A1B0V7I5	Salmonella_phage	1.8e-50	88.6
WP_001067855.1\|32068_32773_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_109217556.1\|32784_33021_-	hypothetical protein	NA	NA	NA	NA
WP_000557454.1\|33033_33894_-	aminoglycoside N-acetyltransferase AAC(3)-IId	NA	NA	NA	NA
WP_000027057.1\|34075_34936_-	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_001235713.1\|35118_35676_-	recombinase family protein	Q1MVP4	Enterobacteria_phage	7.0e-94	100.0
WP_000608644.1\|36239_37502_+\|transposase	IS1380-like element ISEc9 family transposase	A0A1B0VDR3	Salmonella_phage	1.3e-39	100.0
WP_000239590.1\|37757_38633_+	class A extended-spectrum beta-lactamase CTX-M-15	A0A1B0VBP7	Salmonella_phage	1.1e-125	82.4
WP_001393253.1\|38679_39012_-	cupin fold metalloprotein, WbuC family	NA	NA	NA	NA
WP_003155746.1\|42297_43206_+	AAA family ATPase	NA	NA	NA	NA
WP_006122485.1\|43202_44420_+	TniQ family protein	NA	NA	NA	NA
WP_003155741.1\|44481_45105_+	recombinase family protein	E5FFF9	Burkholderia_phage	3.7e-35	43.7
WP_064141398.1\|45282_45756_-	trimethoprim-resistant dihydrofolate reductase DfrA	G3MBI7	Bacillus_virus	8.7e-13	30.7
WP_000845048.1\|45914_46928_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_001067855.1\|47092_47797_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_009310051.1\|47861_48125_-	hypothetical protein	NA	NA	NA	NA
WP_058650054.1\|48691_49036_+	hypothetical protein	NA	NA	NA	NA
WP_016338367.1\|49143_49779_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_2

61243 : 70493

Escherichia_phage(57.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004118283.1\|61243_62110_+	replication initiation protein	A0A222YYK1	Escherichia_phage	1.5e-23	31.1
WP_011977818.1\|63219_64425_+	ParA family protein	A0A077SL49	Escherichia_phage	5.3e-163	69.3
WP_011977819.1\|64424_65399_+	ParB/RepB/Spo0J family partition protein	Q38420	Escherichia_phage	1.4e-86	53.8
WP_096912697.1\|65480_66752_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	3.7e-151	63.5
WP_001568036.1\|66751_67183_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	2.1e-29	53.3
WP_004152353.1\|67416_68388_+	mediator of plasmid stability	A0A222YXF2	Escherichia_phage	1.1e-73	46.8
WP_013214012.1\|68390_69062_+	mediator of plasmid stability	NA	NA	NA	NA
WP_001568040.1\|69124_69355_+	hypothetical protein	NA	NA	NA	NA
WP_014343518.1\|69473_69590_+	hypothetical protein	NA	NA	NA	NA
WP_001568041.1\|69791_70493_+	DNA methylase	A0A2I7RE86	Vibrio_phage	1.6e-26	36.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP034321

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP034321_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP034321_1

3580970-3581047

Orphan

Consensus_repeat	Method
TGCCGGGCGGCGGCTAACGCCTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP034321_1

>merge|NZ_CP034321|1|3580970-3581047|CRISPRCasFinder
TGCCGGGCGGCGGCTAACGCCTTGCCCGGCCTACGGTGCTATTGCGCGGTTATTTTGCCGGGCGGCGGCTGACGCCTT

>NZ_CP034321|1|1|3580970-3581047|CRISPRCasFinder
TGCCGGGCGGCGGCTAACGCCTT	GCCCGGCCTACGGTGCTATTGCGCGGTTATTT
TGCCGGGCGGCGGCTGACGCCTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP034321.1\|WP_009486308.1\|3575118_3575841_-\|ATP-dependent-dethiobiotin-synthetase-BioD	unknown	unknown	gnl\|CDD\|234625
NZ_CP034321.1\|WP_160552414.1\|3584599_3585538_-\|urocanate-hydratase	unknown	unknown	gnl\|CDD\|235448
NZ_CP034321.1\|WP_023282311.1\|3571722_3573744_-\|excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
NZ_CP034321.1\|WP_004183465.1\|3593939_3594371_-\|universal-stress-protein	unknown	unknown	gnl\|CDD\|185353
NZ_CP034321.1\|WP_002895358.1\|3586430_3587156_-\|histidine-utilization-repressor	unknown	unknown	gnl\|CDD\|184961
NZ_CP034321.1\|WP_002895580.1\|3577726_3578767_-\|biotin-synthase-BioB	unknown	unknown	gnl\|CDD\|185063
NZ_CP034321.1\|WP_032411915.1\|3574155_3574368_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP034321.1\|WP_004142100.1\|3575833_3576589_-\|malonyl-ACP-O-methyltransferase-BioC	unknown	unknown	gnl\|CDD\|182340
NZ_CP034321.1\|WP_004142122.1\|3589644_3590928_+\|putative-acyl-CoA-thioester-hydrolase	unknown	unknown	gnl\|CDD\|236709
NZ_CP034321.1\|WP_012737676.1\|3587217_3588174_-\|formimidoylglutamase	unknown	unknown	gnl\|CDD\|234974
NZ_CP034321.1\|WP_004147672.1\|3581595_3582978_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|182566
NZ_CP034321.1\|WP_032411914.1\|3574454_3575177_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223487
NZ_CP034321.1\|WP_004179084.1\|3591200_3593888_-\|cation-transporting-P-type-ATPase	unknown	unknown	gnl\|CDD\|319775
NZ_CP034321.1\|WP_002895575.1\|3580340_3580817_+\|kinase-inhibitor	unknown	unknown	gnl\|CDD\|182339
NZ_CP034321.1\|WP_023282312.1\|3570376_3571474_+\|two-component-system-sensor-histidine-kinase-PmrB	unknown	unknown	gnl\|CDD\|236751
NZ_CP034321.1\|WP_020317287.1\|3576572_3577730_-\|8-amino-7-oxononanoate-synthase	unknown	unknown	gnl\|CDD\|235655
NZ_CP034321.1\|WP_047694504.1\|3594904_3595990_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP034321.1\|WP_021468185.1\|3583076_3584603_-\|histidine-ammonia-lyase	unknown	unknown	gnl\|CDD\|236484
NZ_CP034321.1\|WP_073553397.1\|3588170_3589490_-\|imidazolonepropionase	unknown	unknown	gnl\|CDD\|236478
NZ_CP034321.1\|WP_026005843.1\|3578980_3580270_+\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	unknown	unknown	gnl\|CDD\|181189

Protein	Function_ID	Function_description	E-value
NZ_CP034321.1\|WP_009486308.1\|3575118_3575841_-\|ATP-dependent-dethiobiotin-synthetase-BioD	gnl\|CDD\|234625	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD.	3.26446e-105
NZ_CP034321.1\|WP_160552414.1\|3584599_3585538_-\|urocanate-hydratase	gnl\|CDD\|235448	PRK05414, PRK05414, urocanate hydratase; Provisional.	0
NZ_CP034321.1\|WP_023282311.1\|3571722_3573744_-\|excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_CP034321.1\|WP_004183465.1\|3593939_3594371_-\|universal-stress-protein	gnl\|CDD\|185353	PRK15456, PRK15456, universal stress protein UspG; Provisional.	1.69931e-44
NZ_CP034321.1\|WP_002895358.1\|3586430_3587156_-\|histidine-utilization-repressor	gnl\|CDD\|184961	PRK14999, PRK14999, histidine utilization repressor; Provisional.	3.37417e-172
NZ_CP034321.1\|WP_002895580.1\|3577726_3578767_-\|biotin-synthase-BioB	gnl\|CDD\|185063	PRK15108, PRK15108, biotin synthase; Provisional.	0
NZ_CP034321.1\|WP_004142100.1\|3575833_3576589_-\|malonyl-ACP-O-methyltransferase-BioC	gnl\|CDD\|182340	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional.	1.7976e-160
NZ_CP034321.1\|WP_004142122.1\|3589644_3590928_+\|putative-acyl-CoA-thioester-hydrolase	gnl\|CDD\|236709	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase.	0
NZ_CP034321.1\|WP_012737676.1\|3587217_3588174_-\|formimidoylglutamase	gnl\|CDD\|234974	PRK01722, PRK01722, formimidoylglutamase; Provisional.	1.02886e-177
NZ_CP034321.1\|WP_004147672.1\|3581595_3582978_-\|amino-acid-permease	gnl\|CDD\|182566	PRK10580, proY, putative proline-specific permease; Provisional.	0
NZ_CP034321.1\|WP_032411914.1\|3574454_3575177_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223487	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism].	4.71801e-74
NZ_CP034321.1\|WP_004179084.1\|3591200_3593888_-\|cation-transporting-P-type-ATPase	gnl\|CDD\|319775	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp. PCC 6803 PMA1, a putative Ca(2+)-ATPase. This subfamily includes the P-type Na(+)-ATPase of an alkaliphilic bacterium Exiguobacterium aurantiacum Mna and cyanobacterium Synechocystis sp. PCC 6803 PMA1, a cation-transporting ATPase which may translocate calcium. The P-type ATPases, are a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NZ_CP034321.1\|WP_002895575.1\|3580340_3580817_+\|kinase-inhibitor	gnl\|CDD\|182339	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional.	7.58373e-117
NZ_CP034321.1\|WP_023282312.1\|3570376_3571474_+\|two-component-system-sensor-histidine-kinase-PmrB	gnl\|CDD\|236751	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB.	0
NZ_CP034321.1\|WP_020317287.1\|3576572_3577730_-\|8-amino-7-oxononanoate-synthase	gnl\|CDD\|235655	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed.	0
NZ_CP034321.1\|WP_047694504.1\|3594904_3595990_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	1.6386e-66
NZ_CP034321.1\|WP_021468185.1\|3583076_3584603_-\|histidine-ammonia-lyase	gnl\|CDD\|236484	PRK09367, PRK09367, histidine ammonia-lyase; Provisional.	0
NZ_CP034321.1\|WP_073553397.1\|3588170_3589490_-\|imidazolonepropionase	gnl\|CDD\|236478	PRK09356, PRK09356, imidazolonepropionase; Validated.	0
NZ_CP034321.1\|WP_026005843.1\|3578980_3580270_+\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	gnl\|CDD\|181189	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated.	0

>NZ_CP034321.1|WP_002895575.1|3580340_3580817_+|kinase-inhibitor
MKLISHDLQDGGKLPNRHVFNGMGYDGDNISPHLMWDDVPAGTKSFVVTCYDPDAPTGSGWWHWVVANLPADTRVLPQGAGSGQAELPEEAVQTRTDFGKAGYGGAAPPKGETHRYIFTVHALDVEKIEVDAEASGAMVGFNVHFHSLASASITALFS
>NZ_CP034321.1|WP_026005843.1|3578980_3580270_+|adenosylmethionine--8-amino-7-oxononanoate-transaminase
MTLDDLAFDRRHIWHPYTSMTSPLPVYPVVSAHGCELSLAGGEQLVDGMSSWWAAIHGYNHPRLNAALKGQIDQMSHVMFGGITHPPAVALCRQLVAMTPASLECVFLADSGSVAVEVAMKMALQYWQAKGEPRRRFLTFRNGYHGDTFGAMSVCDPQNSMHSLWQGYLPDNLFAPAPQSRFDGEWDEMDMVPFARLMAAHRHEIAAVILEPIVQGAGGMRMYHPEWLKRVRKMCDREGILLIADEIATGFGRTGKLFACEHAGITADILCLGKALTGGTMTLSAAITTRTVAETISNGEAGCFMHGPTFMGNPLACAVAGESLRLLESGEWQPQVAAIEAQLQAELAPARGSALVADVRVLGAIGVVETRRPVNMATLQRFFVEQGVWIRPFGRLIYLMPPYIITPEQLTRLTRAVNQAVQDETFFSE
>NZ_CP034321.1|WP_002895580.1|3577726_3578767_-|biotin-synthase-BioB
MAHQPRWTMSQVTELFNKPLIDLLFEAQQIHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSARYKTGLEAERLMEVEQVLESARQAKNAGSTRFCMGAAWKNPNDRDMPYLEQMVKGVKALGLESCMTLGTLTDSQAQRLAEAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLDKVRDAGIKVCSGGIVGLGESVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAIARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGINPQQTAVLEGDNEQQQRLEQALLTPDTEEYYNAAAL
>NZ_CP034321.1|WP_020317287.1|3576572_3577730_-|8-amino-7-oxononanoate-synthase
MSWQQRIDRALDERRAAEAFRRRLPVTHGAGRWLEREGERWLNFSSNDYLGLSQHPAIIAAWQQGATRYGVGAGGSGHVSGYSEAHRALEEALADWLGYPRALLFISGFAANQALIAALVEKDDRIVADRLSHASLLEAASLSPAQLRRFTHNDPQQLAQLLAKPLAGEQLAVTEGIFSMDGDSAPLAAIHAATQAAGAVLLVDDAHGVGVVGDEGRGSCAAQAVRPELLVVTFGKAFGVSGAAVLCDEAMADYLLQFARHLIYSTAMPPAQAVALSAALGIIRSDEGRQRRDILAARIRQFREGMGEVSLGLTDSVSAIQPLIVGDNARALNLACRLRDAGCWATAIRPPTVPVGSARLRLTLTAAHHAEDINRLLEVLHGHSE
>NZ_CP034321.1|WP_004142100.1|3575833_3576589_-|malonyl-ACP-O-methyltransferase-BioC
MATVNKQAVAAAFGRAASGYTQHDELQRRCADLLLRQLARRDFAQVLDAGCGPGSMSRYWREAGSVVTALDLSAGMLAQAQRNDAAQHYLLGDIEALPLPDACVDLAWSNLAVQWCDDLRAAIGELYRVARPGGRVAFSTLLADSLPELNQAWQAIDDRPHANRFLSEAAVRAALSGLRATGEVHQISLPFADALSAMRSLKGIGATHLHQGRTAAPLGRGKLRELQLAWPQRQGICPLTYSLFTGVIERD
>NZ_CP034321.1|WP_009486308.1|3575118_3575841_-|ATP-dependent-dethiobiotin-synthetase-BioD
MTKRFFVTGTDTEVGKTIASSALLQAANLLGFHTAGYKPVASGSELTGDGLRNEDALALQRHSRVALRYDQVNPYTFAEPTSPHIISADEGRPIAAARLSSGLRELEGLADWVLVEGAGGWFTPLSDSLTFADWAQAEQLPVILVVGVKLGCINHAMLTAQAVRQAGLPLAGWIANDVQPPGKRHAEYLATLKNRLAAPFLGEIPWLADIAQRDDLGQYLDLRALDPALSTAPAAAHSAP
>NZ_CP034321.1|WP_032411914.1|3574454_3575177_+|ATP-binding-cassette-domain-containing-protein
MLNLQAVNHFYGNQHSLWNVDLVLRPGECIGVLGREGMGKTTLVNCIAGHLPVASGRMTWHDIGAPPQDLTPLSAQSRSAIGIGYVPQDKRIFSQLSVEENLHIALAAGKPGANASGGEIYEHFPELYALRQRKGASLSDDDQYQLALARALIVQPRLLILDEPSRGRGPRCLQKLADLLLRLNRDIGLTVLLAEQHLPFIRRVADRFCVLHRGRNVAEGDIMALNEPLLAQWITPDPAP
>NZ_CP034321.1|WP_032411915.1|3574155_3574368_+|hypothetical-protein
MDNCPQPKTTAARRLSPFAVNRVAKNFYRTIFDNYPLKAARFLLLFAPLFSVGHRKSAAPALTRPDGIGV
>NZ_CP034321.1|WP_023282311.1|3571722_3573744_-|excinuclease-ABC-subunit-B
MSKSFVLHSAFRPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQYTRNDQAFQRGTFRVRGEVIDVFPAESDDIALRIELFDEEVERLSLFDPLTGHVEGTVPRYTIYPKTHYVTPRERIVQAMEEIKLELAERRKVLLANNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVIDESHVTVPQIGGMYRGDRARKETLVEYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPGAYELDKSGGEVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRLRTAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNINGKAILYGDKITPSMAKAIGETERRREKQQRYNEEHGIVPQGLNKKVVDILQLGQGLAKTKAKGRGKAKAVEPAGLSAVDMTPKALQQKIHELEGQMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS
>NZ_CP034321.1|WP_023282312.1|3570376_3571474_+|two-component-system-sensor-histidine-kinase-PmrB
MALFATETWTMRHRLLLTIGAILVVCQLISVFWLWHESKEQIQLLVASAIEGHNNQKHVEHEVREAVASLLVPSLLIVGLALYISMLAVRKITRPLSRLQSELENRTPDNLTPIVLSESVPEVTAVTTALNQLVSRLNLTLDRERLFTADVAHELRTPLAGLRLHLELLAKVHGMGVDPLIQRLDQMTTSISQLLQLARVGQSFSAGSYQQVLLLDDVVKPLQDELEAMLAQRQQRLLLMDIENEAVVSGDATLIRVILRNLVENAHRYSPEGSTIRVSVKAGLMPVMAVEDEGPGIDEAKSGELSKAFVRMDSRYGGIGLGLSIVTRIAQLHDAQFFLHNRQPGPGVRAWVLFPQRGGQNVSTH
>NZ_CP034321.1|WP_004147672.1|3581595_3582978_-|amino-acid-permease
MQQQHKPHLLRGLNARHIRFIALGSAIGTGLFYGSASAIKAAGPAVLLAYLIGGAAVFIVMRALGEMAVRNPVSGSFGSYARQYLGPLAGFITGWTYTFEMVIVALADVTAFGIYMGLWYPDVPRWIWILSIIFFIGAMNLCNVRVFGEMEFWLSLVKVVAIIAMMLAGAGIIFFGFGHSFPATGLENLWSHGGFAPNGWQGVIASLGIVMFAFGGVEIIGVTAAEAKDPKKVIPQAINTIPLRIILFYVCTLAVLMAIFPWNSFGEQGSPFVLIFDGLGIPAAATILNIIVISASISAINSDIFGAGRMMYGMSKEGLAPKSFQRIASNGVPWMTVVVMGGALLAAVVLNYLIPEQVFVLIASLAAFATVWVWLMILLSHFAMRRGLSAEERSQIAFPIPFWPVAPLLTLLFMGLVIAVLGMFAETRMALIAGLVWLGLLTVVWYARVRKTALQVATEQ
>NZ_CP034321.1|WP_021468185.1|3583076_3584603_-|histidine-ammonia-lyase
MKSLTLIPGQLSLSQLRDIYSHPVNITLDSGAFAAIDESVACVNAILAEGRTAYGINTGFGLLAQTRISTEDLENLQRSLVLSHAAGVGEPLDDDLARLIMVLKINSLSRGFSGIRLSVIQALIGLVNAGVTPWIPAKGSVGASGDLAPLAHMSLTLLGEGKARVRGGEWLPATEALRQVGLEPITLAAKEGLALLNGTQASTAFALRGLFEAEDLFASAVVCGALTTEAALGSRRPFDARIHEVRGQRGQIDAAALYRHLLTDDSAISQSHHNCSKVQDPYSLRCQPQVMGACLTQIRQAAEVLLAEANAVSDNPLVFAAENDVISGGNFHAEPVAMAADNIALAIAEIGSLSERRIALMMDSHMSQLPPFLVKNGGVNSGFMIAQVTAAALASENKALSHPHSVDSLPTSANQEDHVSMAPAAGRRLWAMAENTRGVLAVEWLAAAQGLDMREGLTTSPLLEEARHLLRERVPHYTQDRYFAPDIDNAIALLAARHLTRLLPAVLH
>NZ_CP034321.1|WP_160552414.1|3584599_3585538_-|urocanate-hydratase
MKRGVRPDMVTDQTSAHDPLHGYLPKGWSWEEYQQKAESDPQGTILAAKRSMADHVQAMLAFHEMGVPTFDYGNNIRQMAQEVGVSNAFDFPGFVPAYIRPLFCRGIGPFRWVALSGDPQDIYKTDAKVKEIIKDDQHLHHWLDMARERISFQGLPARICWVGLEWRQKLGLAFNEMVRSGEVSAPIVIGRDHLDSGSVASPNRETEAMRDGSDAVSDWPLLNALLNTASGATWVSLHHGGGVGMGFSQHSGMVIVCDGTDEAAARIARVLRNDPATGVMRHADAGYEIAIECAAEQGLNLPMVAATQGNAK
>NZ_CP034321.1|WP_002895358.1|3586430_3587156_-|histidine-utilization-repressor
MFAQQPRSAPAPFYEKVKQAISEKIHSGVWRPHDRIPSEAELVAQFGFSRMTINRALRELTDEGLLVRLQGVGTFVAEPKGQSALFEVRSIAAEIVARHHQHRCEVLLLEETRADHIQATALSVPEGTRIFHSLMVHYENEVPVQIEDRCVNAAVVPDYLHQDYTATTPHDYLSLIAPLTEGEHIVEAVQATAEECALLHIHAHDPCLLIRRRTWSTTHIVSHARLLFPGSRYRLQGRFGS
>NZ_CP034321.1|WP_012737676.1|3587217_3588174_-|formimidoylglutamase
MMLWQATPASLWQGRDDSAEAPNALRLFQTIARAERFAPQEMPGDIALLGFACDEGVRRNKGRTGAADGPATLRRALANMASHQGHDRCVDMGTISVDGEQLEAAHQALREAVADCQRAGKRTLVLGGGHETAFGHGAGVLDAFPGEKVGIINLDAHLDLRFADCASSGTPFRQLALECDAQQRGFHYTCIGVSRAANTQALWDEAARRQVAIVEDLEVLTAFETRVLPELERNIAQFDRLYLTIDLDVLPAREMPAVSAPAALGVPLATLLRIVEPLCRSGKLQAVDLVEFNPLFDIDGQGARTAARVAWQIAHWWR
>NZ_CP034321.1|WP_073553397.1|3588170_3589490_-|imidazolonepropionase
MVFSHKKITFPCAIVDFTGVMKINVYTTHDKLNAMTEATSELVIWRNGRLATLNPDHAQPYGLLERHALLVRDGRIAAIVAEDDVPSGRSIDLEGRLVTPGLIDCHTHLVFGGSRAQEWEQRLNGVSYQTISASGGGINSTVRATRDSSEAELLALAQPRLERLLREGVTTLEIKSGYGLDLPNERKMLRVARQLADHNGVELSATLLSAHATPPEYQGDADGYITLVCETILPTLWQEGLFESVDVFCENVGFSPQQTERVFQAAQALGIPVKGHVEQLSSLGGAQLVSRYHGLSADHIEYLTEEGVAAMRESGTVAALLPGAFYFLNETRKPPVELLRKYQVPMAVATDFNPGTSPFASLHLAMNMACVKFGLTPEEAWAGVTRHAARALGRQASHGQLAPGFVANFAIWDAEHPVEMVYEPGRSPLWHRVVQGELQ
>NZ_CP034321.1|WP_004142122.1|3589644_3590928_+|putative-acyl-CoA-thioester-hydrolase
MNTYSVSRLALALAFGVTLSACSSTPADQQPSTQTAPGTTARPILNAEEAKNFTPAAYFQSLAPNAAAWTPSAISLPAQPDFIVGPAGTQGVTHTTIQAAVDAAIARHSNRRLYIAIMPGEYPGTVYVPAAPGALTLYGTGDKPIDVKISEAIDSEMDRNTWRRLVNPGGKYMPGKPAWYMFDSCQSKSAATVGVMCSAVFWSQNNGLQLQNLTIANNLGDSVDAGTHQAVALRSDGDQVQINKVNILGRQNTFFVTNSGVQNRLQDNRQTRTLVTNSYIEGDVDIVSGRGAVVFDNTDFRVVNSRTQKEAYVFAPATLKSVTYGFLATNSRFTASGDNVAQLGRALDVDGNSNGQVVIRDSAINEGFNIAQPWAAAVGSGRPFSGNTGSADDKGNLQRNLNDNGFNRMWEYNNRGVGSTVVAEPKQ
>NZ_CP034321.1|WP_004179084.1|3591200_3593888_-|cation-transporting-P-type-ATPase
MNTDKPGAPYYQRSVEETLASVQSSPEGISGTEAATRLQQYGENALPQKPGKPAWLRFIAHFNDVLIYVLLAAALLKAVMGHWIDMAVILAVAVVNALIGFIQESNAEKSLQSIRNMLSSEAVAIRQGNHETIPTTSLVPGDIVVIRAGDRIPADLRVIEAHNLRVEEAILTGESTVVEKTTEPLSGDLPLGDRSNLLFSGTTVSSGAGKGIVVATGGDTELGHINQMMAGIEKHRTPLLVQMDKLGKAIFILILVMMAALFVFSLLFRDMPVSELMLSLISLAVASVPEGLPAIISIILSLGVQAMARQKAIIRKLPTVETLGAMTVICSDKTGTLTMNEMTVKAVITADSVYRVEGDSYEPVGKIHAIDDPTPVTIAPGSLFERYLRTIDLCNDSQLIKEESGLWKITGGPTEGALKVLAAKVTLPPLTSELRSKIPFDSQYKYMSTLYRLGEEEVVLVTGAPDVLFRLCQYQQSDSGLQPLDLPYWEGKIEEYAREGLRMVAAAWKPAAAGQTELTHQDLQQGVILLGVAGMMDPPRPEAITAIADCLQAGIRVKMITGDHPQTAMSIGKMLGIGNAGNAITGRELEVMDDAQLSVAAQQFDIFARTSPEDKFRLVQALQSKKEIVGMTGDGVNDAPALKQADVGVAMGIKGTEVTKEAADMVLTDDNFATIASAVREGRRVYDNLKKTILFVMPTNLAQGLLIVIALLAGNVLPLTPVLILWMNMATSATLSFGLAFEAGEKNIMRRPPRDPKIHVMDGFAIWRVAFVGSMIAVSAFILEAWLQPRGYSPEFIRTVLLQTLVTAQWFYMLNCRVSDGFSLTKGLLANKGIWIVSGVLLLLQLLIIYAPFMQMLFGTTGLPFRYWVITFIIGFAMFLIVELEKPLTRKWRSA
>NZ_CP034321.1|WP_004183465.1|3593939_3594371_-|universal-stress-protein
MYKNIVVPVDVFDAGLADKALSHAKFLAQHSAGQIHLIHVIPAFSPVLTRGFISDARKMEDHLLNTAKEKLSELVKKNGLAEDASHLYVRSGNVRDQVIALADELKADVVIVGSRNPGIQTHLLGSEAANIVRYAHVPVFVVR
>NZ_CP034321.1|WP_047694504.1|3594904_3595990_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MNRYFSLIPVVIIFTTACDQKAPTVESAPRMVKVAQVTAVGNTQQRTFPARIESGDSTELSFKRGGQVESLDIRQGASVAQGQTLARLNAREAQQRVNERQTAATLAQRQFDRFQTLAGRQVISQAEMDVQRANRDAANAALKIAREELAQMSLIAPFSGIAAGVHIRNHQVVAAGQPVITLTRTDLLDVVFSIPENLFTSLDIRNTAYRPVVRINTLPGREFTAEYKEHTGSSDNSTLTWQIVLTMPRPDDFPAVGGVSGTVTVNLGNLPASAGRETLIVPAEAVFNPDNRPKNEPVVWVVKGDNAHRYLEERKVTVGEVTSQGVAITDGLRAGEQVVAAGVSELHAGQPVRVWTRERGL

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Crispr_ID: NZ_CP034321_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP034321_2

4412962-4413056

Orphan

Consensus_repeat	Method
ACTATGGTTTTTATGGTTTTTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP034321_2

>merge|NZ_CP034321|2|4412962-4413056|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATGGTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATGACTGTGGTTTTTATGGTTTTTATT

>NZ_CP034321|2|2|4412962-4413056|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATG	GTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATG
ACTGTGGTTTTTATGGTTTTTATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP034321.1\|WP_004147026.1\|4416615_4418964_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NZ_CP034321.1\|WP_002888347.1\|4410789_4411329_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|163145
NZ_CP034321.1\|WP_004145972.1\|4399177_4400023_-\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
NZ_CP034321.1\|WP_004177423.1\|4400360_4402070_+\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
NZ_CP034321.1\|WP_004177424.1\|4402080_4403583_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NZ_CP034321.1\|WP_004177431.1\|4422502_4423351_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	unknown	unknown	gnl\|CDD\|273208
NZ_CP034321.1\|WP_020802792.1\|4400008_4400179_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP034321.1\|WP_002888329.1\|4419018_4420305_+\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP034321.1\|WP_002888332.1\|4415544_4416372_-\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP034321.1\|WP_002888337.1\|4414813_4415512_+\|response-regulator	unknown	unknown	gnl\|CDD\|226931
NZ_CP034321.1\|WP_038991584.1\|4413197_4414814_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225827
NZ_CP034321.1\|WP_023287243.1\|4407136_4410043_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_CP034321.1\|WP_117049188.1\|4404591_4406949_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NZ_CP034321.1\|WP_002888320.1\|4423603_4424083_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
NZ_CP034321.1\|WP_002888327.1\|4420310_4421300_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP034321.1\|WP_002888348.1\|4410055_4410715_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NZ_CP034321.1\|WP_002888324.1\|4421296_4422118_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP034321.1\|WP_002888345.1\|4411508_4412873_-\|2-hydroxycarboxylate-transporter-family-protein	unknown	unknown	gnl\|CDD\|377030
NZ_CP034321.1\|WP_002888323.1\|4422120_4422498_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP034321.1\|WP_002888353.1\|4403720_4404416_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181

Protein	Function_ID	Function_description	E-value
NZ_CP034321.1\|WP_004147026.1\|4416615_4418964_+\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NZ_CP034321.1\|WP_002888347.1\|4410789_4411329_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	5.54697e-86
NZ_CP034321.1\|WP_004145972.1\|4399177_4400023_-\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
NZ_CP034321.1\|WP_004177423.1\|4400360_4402070_+\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
NZ_CP034321.1\|WP_004177424.1\|4402080_4403583_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
NZ_CP034321.1\|WP_004177431.1\|4422502_4423351_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
NZ_CP034321.1\|WP_002888337.1\|4414813_4415512_+\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	5.03078e-66
NZ_CP034321.1\|WP_002888329.1\|4419018_4420305_+\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
NZ_CP034321.1\|WP_002888332.1\|4415544_4416372_-\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164
NZ_CP034321.1\|WP_038991584.1\|4413197_4414814_+\|sensor-histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	8.20013e-173
NZ_CP034321.1\|WP_023287243.1\|4407136_4410043_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_CP034321.1\|WP_117049188.1\|4404591_4406949_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NZ_CP034321.1\|WP_002888320.1\|4423603_4424083_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.71656e-127
NZ_CP034321.1\|WP_002888327.1\|4420310_4421300_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_CP034321.1\|WP_002888348.1\|4410055_4410715_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	2.4454e-161
NZ_CP034321.1\|WP_002888324.1\|4421296_4422118_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
NZ_CP034321.1\|WP_002888345.1\|4411508_4412873_-\|2-hydroxycarboxylate-transporter-family-protein	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169
NZ_CP034321.1\|WP_002888323.1\|4422120_4422498_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
NZ_CP034321.1\|WP_002888353.1\|4403720_4404416_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0

>NZ_CP034321.1|WP_002888345.1|4411508_4412873_-|2-hydroxycarboxylate-transporter-family-protein
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>NZ_CP034321.1|WP_002888347.1|4410789_4411329_-|citrate-lyase-holo-[acyl-carrier-protein]-synthase
MSVDTPAQAGVSIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>NZ_CP034321.1|WP_002888348.1|4410055_4410715_+|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVARVWGHPQPAEGLVDLPLICDWPNRPKQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>NZ_CP034321.1|WP_023287243.1|4407136_4410043_+|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQETNVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESIDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAAIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>NZ_CP034321.1|WP_117049188.1|4404591_4406949_+|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLRDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFTASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIDRRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSDVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRDTIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPVDYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>NZ_CP034321.1|WP_002888353.1|4403720_4404416_+|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQGIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>NZ_CP034321.1|WP_004177424.1|4402080_4403583_+|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATAEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>NZ_CP034321.1|WP_004177423.1|4400360_4402070_+|ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLSQSVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKESVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGVYEDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSQAALTH
>NZ_CP034321.1|WP_020802792.1|4400008_4400179_+|hypothetical-protein
MRFGHTRGSPRRYQWHQLSIFIILSLSALSRLRRRWEFGEKPAQQAKKAPVACIPP
>NZ_CP034321.1|WP_004145972.1|4399177_4400023_-|arabinose-operon-transcriptional-regulator-AraC
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVRDACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE
>NZ_CP034321.1|WP_038991584.1|4413197_4414814_+|sensor-histidine-kinase
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLGLSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEAH
>NZ_CP034321.1|WP_002888337.1|4414813_4415512_+|response-regulator
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSDREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>NZ_CP034321.1|WP_002888332.1|4415544_4416372_-|co-chaperone-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>NZ_CP034321.1|WP_004147026.1|4416615_4418964_+|LPS-assembly-protein-LptD
MKKRIPSLLATMIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>NZ_CP034321.1|WP_002888329.1|4419018_4420305_+|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>NZ_CP034321.1|WP_002888327.1|4420310_4421300_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVPLNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDHDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>NZ_CP034321.1|WP_002888324.1|4421296_4422118_+|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>NZ_CP034321.1|WP_002888323.1|4422120_4422498_+|Co2+/Mg2+-efflux-protein-ApaG
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>NZ_CP034321.1|WP_004177431.1|4422502_4423351_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKSLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>NZ_CP034321.1|WP_002888320.1|4423603_4424083_-|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIGRPLPGRKNIVISSKPGSDDRVQWVSSVEEAIAACGDVEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1224386 : 1276676

Enterobacteria_phage(22.22%)

tail,coat,holin,terminase,integrase

attL 1222351:1222365|attR 1282656:1282670

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1222351:1222365	attL	NA	NA	NA	NA
WP_023301229.1\|1224386_1225616_+\|integrase	site-specific integrase	H6WRW7	Salmonella_phage	1.3e-238	96.3
WP_023301228.1\|1225593_1225869_-	excisionase Xis	H6WRW8	Salmonella_phage	9.2e-31	72.7
WP_071557557.1\|1225907_1226147_-	DUF4060 family protein	M9P0E0	Enterobacteria_phage	3.2e-24	71.8
WP_023301227.1\|1226154_1226463_-	hypothetical protein	I6PD68	Cronobacter_phage	3.2e-24	56.9
WP_032423798.1\|1226459_1227074_-	hypothetical protein	M1F3E2	Salmonella_phage	1.0e-66	61.6
WP_029602854.1\|1227117_1228206_-	recombinase RecT	H6WRX0	Salmonella_phage	1.4e-106	56.0
WP_102001309.1\|1228218_1231323_-	exodeoxyribonuclease	H6WRX1	Salmonella_phage	2.1e-296	57.9
WP_023282477.1\|1231460_1231616_-	hypothetical protein	K7PGY4	Enterobacteria_phage	2.0e-14	71.2
WP_004179600.1\|1231624_1231816_-	YebW family protein	NA	NA	NA	NA
WP_080883382.1\|1232302_1232512_+	hypothetical protein	A0A192Y6Q5	Salmonella_phage	1.3e-21	76.1
WP_102001308.1\|1232970_1233390_-	hypothetical protein	NA	NA	NA	NA
WP_023307409.1\|1233408_1233804_-	helix-turn-helix transcriptional regulator	K7PM35	Enterobacteria_phage	5.3e-48	74.0
WP_040243773.1\|1233908_1234142_+	Rha family transcriptional regulator	A0A0M4QX15	Salmonella_phage	2.1e-20	61.6
WP_043906919.1\|1234144_1234681_+	hypothetical protein	K7PJT7	Enterobacteria_phage	3.6e-63	70.4
WP_164943421.1\|1234769_1235567_+	DNA-binding protein	A0A2H4J902	uncultured_Caudovirales_phage	9.7e-89	70.6
WP_164943422.1\|1235626_1236592_+	replication protein	K7PGZ0	Enterobacteria_phage	7.4e-59	76.7
WP_164943423.1\|1236588_1237326_+	Replication protein P	A0A0K2FIT1	Enterobacteria_phage	2.0e-64	55.2
WP_004218528.1\|1237322_1237625_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_164943424.1\|1237621_1238113_+	hypothetical protein	E7C9P6	Salmonella_phage	3.8e-35	57.1
WP_164943425.1\|1238109_1238298_+	hypothetical protein	NA	NA	NA	NA
WP_164943426.1\|1238472_1238895_+	hypothetical protein	NA	NA	NA	NA
WP_064392075.1\|1238887_1239154_+	hypothetical protein	NA	NA	NA	NA
WP_029602865.1\|1239153_1239447_+	hypothetical protein	Q6UAT9	Klebsiella_phage	2.7e-44	86.6
WP_114264853.1\|1239443_1240010_+	hypothetical protein	K7PH64	Enterobacterial_phage	4.1e-41	67.5
WP_102001307.1\|1240002_1240242_+	hypothetical protein	G8C7S3	Escherichia_phage	1.7e-09	53.4
WP_040241897.1\|1240404_1240632_+	hypothetical protein	NA	NA	NA	NA
WP_004184503.1\|1241007_1241241_+	DinI-like family protein	K7PM44	Enterobacteria_phage	2.9e-25	68.8
WP_071557491.1\|1241346_1241595_+	hypothetical protein	K7PHG9	Enterobacteria_phage	5.0e-28	67.9
WP_016946309.1\|1241629_1242226_+	DUF1367 family protein	K7PKS6	Enterobacteria_phage	1.3e-90	80.1
WP_004892208.1\|1242434_1242731_+	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	1.2e-36	72.9
WP_023282412.1\|1242727_1243084_+	RusA family crossover junction endodeoxyribonuclease	K7P6W0	Enterobacteria_phage	1.5e-41	64.1
WP_164943427.1\|1243199_1244021_+	antitermination protein	K7PKS8	Enterobacteria_phage	2.4e-98	67.5
WP_001294159.1\|1244264_1244651_+	membrane protein	A0A192Y8P2	Salmonella_phage	1.6e-57	90.6
WP_074185786.1\|1244637_1244919_+\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	1.7e-19	49.5
WP_164943428.1\|1244918_1245548_+	glycoside hydrolase family 19 protein	F1C591	Cronobacter_phage	1.8e-85	73.4
WP_064159875.1\|1245550_1245826_+	hypothetical protein	G8C7W1	Escherichia_phage	3.3e-12	46.1
WP_072061039.1\|1245776_1245971_+	hypothetical protein	A0A286SGR9	Klebsiella_phage	2.4e-25	87.5
WP_048295324.1\|1245967_1246249_+	hypothetical protein	G8C7W3	Escherichia_phage	1.8e-29	71.0
WP_048295323.1\|1246584_1246821_+	DUF2560 family protein	A0A286N2R1	Klebsiella_phage	2.9e-33	97.4
WP_164943429.1\|1247071_1248076_+\|terminase	terminase small subunit	Q5QF76	Pseudomonas_virus	5.6e-33	43.1
WP_065520099.1\|1248053_1249358_+\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	1.3e-146	60.3
WP_102001300.1\|1249362_1250787_+	DUF4055 domain-containing protein	G8C7P4	Escherichia_phage	2.9e-192	71.3
WP_065520102.1\|1250770_1251883_+	hypothetical protein	I6PD76	Cronobacter_phage	1.4e-109	53.7
WP_065520054.1\|1252417_1253182_+	hypothetical protein	G8C7P6	Escherichia_phage	3.9e-79	62.2
WP_065520053.1\|1253269_1254406_+\|coat	P22 coat - protein 5 family protein	G8C7P7	Escherichia_phage	2.6e-156	74.6
WP_103849527.1\|1254455_1254785_+	hypothetical protein	NA	NA	NA	NA
WP_102001294.1\|1254788_1255199_+	protein singed	A0A0H5AUF0	Pseudomonas_phage	1.7e-09	39.0
WP_060415540.1\|1255200_1255584_+	hypothetical protein	A0A0S2SYG4	Pseudomonas_phage	5.1e-19	43.7
WP_060415541.1\|1255585_1256137_+	hypothetical protein	G8C7Q1	Escherichia_phage	5.9e-29	39.9
WP_004190640.1\|1256133_1256526_+	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_065520051.1\|1256549_1257719_+	Ig domain-containing protein	A0A0D4DBN5	Acinetobacter_phage	4.7e-23	27.0
WP_023313117.1\|1257772_1258255_+	hypothetical protein	NA	NA	NA	NA
WP_121496572.1\|1258392_1258590_+	hypothetical protein	NA	NA	NA	NA
WP_048997571.1\|1258657_1259179_+	zinc ribbon domain-containing protein	S4TR42	Salmonella_phage	8.1e-28	57.3
WP_102001295.1\|1259271_1262622_+\|tail	phage tail protein	A0A2H4J107	uncultured_Caudovirales_phage	3.2e-93	32.4
WP_023313121.1\|1262621_1263095_+	hypothetical protein	A0A286S298	Klebsiella_phage	8.6e-61	68.6
WP_069334944.1\|1263081_1263564_+	DUF1833 family protein	A0A286S2B1	Klebsiella_phage	3.1e-82	95.6
WP_069334943.1\|1263573_1263954_+	nitrite transporter	A0A286S2A6	Klebsiella_phage	2.3e-72	99.2
WP_164943430.1\|1263950_1267019_+	kinase	A0A286S259	Klebsiella_phage	0.0e+00	97.2
WP_164943431.1\|1267094_1270676_+	hypothetical protein	A0A286S1P0	Klebsiella_phage	4.3e-35	66.9
WP_073553305.1\|1270833_1271043_+	Hin recombinase	A0A286S1P7	Klebsiella_phage	4.5e-22	77.9
WP_164943432.1\|1271120_1271543_+	hypothetical protein	K7P834	Enterobacteria_phage	6.8e-25	44.5
WP_142485406.1\|1272398_1272764_+	hypothetical protein	K7PGV5	Enterobacterial_phage	6.3e-27	53.3
WP_002914069.1\|1272956_1274756_+	elongation factor 4	E4ZFJ7	Streptococcus_phage	5.5e-23	25.4
WP_002914067.1\|1274771_1275746_+	signal peptidase I	NA	NA	NA	NA
WP_002914065.1\|1275995_1276676_+	ribonuclease III	A0A0P0YM82	Yellowstone_lake_phycodnavirus	1.6e-20	29.7
1282656:1282670	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1676196 : 1683100

Planktothrix_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004175147.1\|1676196_1677060_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-10	27.5
WP_004180550.1\|1677070_1677844_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.9e-26	36.7
WP_004151134.1\|1678083_1678980_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
WP_004144192.1\|1679222_1680584_-\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	1.8e-207	94.8
WP_004175198.1\|1680902_1681625_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
WP_004149058.1\|1681621_1683100_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	8.5e-30	28.3

DBSCAN-SWA_3

2679364 : 2688779

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_162263333.1\|2679364_2680999_+	DUF4981 domain-containing protein	L0N6M2	Herpes_simplex_virus	3.1e-182	55.8
WP_038991780.1\|2681053_2682319_+	MFS transporter	NA	NA	NA	NA
WP_001620097.1\|2682349_2683438_-	AAA family ATPase	A0A077SLJ9	Escherichia_phage	8.0e-211	100.0
WP_004183954.1\|2683524_2683785_-	hypothetical protein	A0A077SK33	Escherichia_phage	3.5e-40	97.7
WP_001620095.1\|2684082_2684943_+	class A broad-spectrum beta-lactamase SHV-1	A0A077SL40	Escherichia_phage	4.4e-156	99.7
WP_002210513.1\|2684963_2685725_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_032414898.1\|2685986_2686889_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	7.7e-159	99.3
WP_004190239.1\|2686900_2688166_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	3.9e-233	99.5
WP_002210516.1\|2688158_2688779_+	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0

DBSCAN-SWA_4

3081775 : 3170508

Klebsiella_phage(45.45%)

tail,lysis,transposase,head,capsid,portal,terminase,integrase,tRNA

attL 3108591:3108605|attR 3168319:3168333

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004892876.1\|3081775_3082276_+\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
WP_002901080.1\|3082392_3082839_+	DUF441 domain-containing protein	NA	NA	NA	NA
WP_004140469.1\|3082822_3083617_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_020324105.1\|3083724_3084900_+	CynX/NimT family MFS transporter	NA	NA	NA	NA
WP_004140471.1\|3084931_3085624_-	CTP synthase	NA	NA	NA	NA
WP_004150778.1\|3085769_3086279_+	DUF523 domain-containing protein	NA	NA	NA	NA
WP_014343000.1\|3086283_3086622_+	DUF488 family protein	NA	NA	NA	NA
WP_004176548.1\|3086611_3086851_-	DUF333 domain-containing protein	NA	NA	NA	NA
WP_004176549.1\|3087151_3088165_+	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.9e-12	29.0
WP_004150782.1\|3088222_3088324_+	YoaK family small membrane protein	NA	NA	NA	NA
WP_142900986.1\|3088323_3088398_+	protein YoaJ	NA	NA	NA	NA
WP_004140488.1\|3088515_3088641_+	hypothetical protein	NA	NA	NA	NA
WP_004140489.1\|3088700_3088964_-	DUF2534 family protein	NA	NA	NA	NA
WP_004150783.1\|3089094_3089733_-	leucine efflux protein LeuE	NA	NA	NA	NA
WP_004148038.1\|3089822_3090737_-	kdo(2)-lipid IV(A) palmitoleoyltransferase	A0A1W6JP29	Morganella_phage	1.1e-72	50.4
WP_004148037.1\|3091198_3091318_-	hypothetical protein	NA	NA	NA	NA
WP_004150784.1\|3091398_3092442_-	type II asparaginase	NA	NA	NA	NA
WP_164943461.1\|3092744_3093953_+	HD domain-containing protein	NA	NA	NA	NA
WP_019705575.1\|3094026_3095811_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	5.8e-17	36.1
WP_004150788.1\|3095817_3096708_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004140497.1\|3096828_3098337_+	UbiD family decarboxylase	NA	NA	NA	NA
WP_032410895.1\|3098370_3098535_+	hypothetical protein	NA	NA	NA	NA
WP_004150790.1\|3098647_3099334_-	EAL domain-containing protein	NA	NA	NA	NA
WP_004140501.1\|3099731_3099911_-	hypothetical protein	NA	NA	NA	NA
WP_004150791.1\|3099950_3100583_-	DNA-binding protein	NA	NA	NA	NA
WP_032434340.1\|3101149_3101347_+	hypothetical protein	NA	NA	NA	NA
WP_004183659.1\|3101462_3102473_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_032434338.1\|3102469_3103876_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_004179357.1\|3103931_3104819_-	manganese catalase family protein	NA	NA	NA	NA
WP_004140514.1\|3104835_3105342_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_004148027.1\|3105368_3105863_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_004150795.1\|3105953_3106139_-	general stress protein	NA	NA	NA	NA
WP_040154132.1\|3106358_3106694_+	hypothetical protein	NA	NA	NA	NA
WP_004140529.1\|3106761_3107955_+	glutathione-dependent formaldehyde dehydrogenase	NA	NA	NA	NA
WP_004140530.1\|3108067_3108295_+	DUF1272 domain-containing protein	NA	NA	NA	NA
3108591:3108605	attL	NA	NA	NA	NA
WP_032434336.1\|3108744_3109068_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_004190914.1\|3109060_3109453_+	hypothetical protein	NA	NA	NA	NA
WP_117049221.1\|3109449_3110163_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004892953.1\|3110435_3110588_-	isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-18	92.0
WP_023159863.1\|3111237_3111930_-	EAL domain-containing protein	NA	NA	NA	NA
WP_032430712.1\|3112284_3113343_-	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	6.1e-14	31.1
WP_064323406.1\|3113765_3115190_-\|tail	tail fiber domain-containing protein	A0A0P0IDN1	Klebsiella_phage	5.0e-96	48.7
WP_164943462.1\|3115251_3127839_-	DUF1983 domain-containing protein	Q6UAW1	Klebsiella_phage	0.0e+00	48.4
WP_064323696.1\|3127901_3128495_-\|tail	tail assembly protein	K7PHE5	Enterobacteria_phage	2.2e-77	75.6
WP_048337012.1\|3128546_3128894_-	hypothetical protein	NA	NA	NA	NA
WP_023317958.1\|3128926_3129637_-	C40 family peptidase	Q6UAW4	Klebsiella_phage	2.5e-136	90.3
WP_064323404.1\|3129638_3130394_-\|tail	phage minor tail protein L	Q6UAW5	Klebsiella_phage	4.6e-125	80.9
WP_014228916.1\|3130390_3130729_-\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	8.3e-58	89.3
WP_164943463.1\|3130728_3134064_-\|tail	phage tail tape measure protein	Q6UAW7	Klebsiella_phage	0.0e+00	86.8
WP_071603425.1\|3134063_3134276_-	hypothetical protein	Q6UAW9	Klebsiella_phage	3.7e-32	88.9
WP_014228914.1\|3134296_3134662_-\|tail	phage tail protein	Q6UAW8	Klebsiella_phage	1.6e-51	89.3
WP_014228913.1\|3134719_3135181_-\|tail	major tail shaft subunit	Q6UAX0	Klebsiella_phage	7.8e-67	83.7
WP_017898997.1\|3135212_3135614_-	hypothetical protein	Q6UAX1	Klebsiella_phage	1.7e-62	94.0
WP_017880258.1\|3135610_3136000_-	hypothetical protein	Q6UAX2	Klebsiella_phage	9.6e-58	86.0
WP_014228910.1\|3135980_3136319_-\|head,tail	head-tail adaptor protein	Q6UAX3	Klebsiella_phage	5.6e-54	91.1
WP_020317538.1\|3136315_3136633_-\|head,tail	phage gp6-like head-tail connector protein	Q6UAX4	Klebsiella_phage	1.5e-45	89.8
WP_014907814.1\|3136613_3136874_-	hypothetical protein	Q6UAX5	Klebsiella_phage	1.5e-22	63.9
WP_004148013.1\|3136932_3138219_-\|capsid	phage major capsid protein	Q6UAX6	Klebsiella_phage	1.2e-216	89.3
WP_032429388.1\|3138296_3139217_-	S49 family peptidase	Q6UAX7	Klebsiella_phage	9.6e-149	88.2
WP_004148010.1\|3139253_3140513_-\|portal	phage portal protein	Q6UAX8	Klebsiella_phage	6.2e-223	90.0
WP_032418045.1\|3140512_3140692_-	hypothetical protein	Q6UAX9	Klebsiella_phage	4.0e-11	57.6
WP_012542167.1\|3140685_3142407_-\|terminase	terminase large subunit	Q7Y413	Yersinia_phage	1.1e-190	57.4
WP_164943464.1\|3142406_3142841_-\|terminase	phage terminase small subunit P27 family	A0A1J0GV10	Halomonas_phage	5.5e-30	62.8
WP_032429123.1\|3143087_3143516_-	hypothetical protein	Q6UAS0	Klebsiella_phage	8.1e-42	62.0
WP_023289183.1\|3143515_3143839_-	hypothetical protein	NA	NA	NA	NA
WP_032428746.1\|3143790_3144153_-	HNH endonuclease	Q6UAS2	Klebsiella_phage	1.2e-57	83.3
WP_162924227.1\|3144136_3144301_-	hypothetical protein	NA	NA	NA	NA
WP_023289182.1\|3144479_3144704_+	hypothetical protein	NA	NA	NA	NA
WP_049115059.1\|3144742_3145180_-	hypothetical protein	NA	NA	NA	NA
WP_016160650.1\|3146129_3146480_-	hypothetical protein	R9TPM9	Aeromonas_phage	7.9e-11	38.1
WP_023317653.1\|3146476_3146974_-	lysozyme	A0A1V0E5Q7	Salmonella_phage	3.7e-78	85.2
WP_016160648.1\|3146973_3147189_-\|lysis	phage S lysis protein	A5LH82	Enterobacteria_phage	2.7e-30	88.7
WP_139042930.1\|3148106_3148226_+	small membrane protein	NA	NA	NA	NA
WP_004147997.1\|3148994_3149198_+	hypothetical protein	NA	NA	NA	NA
WP_032432828.1\|3149441_3150044_-	hypothetical protein	H9C175	Pectobacterium_phage	4.2e-76	68.1
WP_064149226.1\|3150060_3151092_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	2.4e-95	49.3
WP_016528965.1\|3151291_3151684_-	LexA DNA binding domain-containing protein	K7PHB4	Enterobacterial_phage	6.8e-11	35.6
WP_050597314.1\|3151724_3151964_-	hypothetical protein	H6WRY6	Salmonella_phage	1.9e-16	58.6
WP_164943465.1\|3152026_3152260_-	DinI family protein	K7PM44	Enterobacteria_phage	1.1e-24	71.1
WP_164943466.1\|3152792_3153587_-	Sir2 family NAD-dependent protein deacetylase	NA	NA	NA	NA
WP_032432833.1\|3153586_3154141_-	non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA
WP_085819744.1\|3154137_3155118_-	adenosine deaminase	NA	NA	NA	NA
WP_065804438.1\|3155888_3156329_-	hypothetical protein	NA	NA	NA	NA
WP_032432837.1\|3156342_3156807_-	replication protein	A0A0U2JGJ0	Escherichia_phage	5.0e-61	69.5
WP_164943491.1\|3156799_3157795_-	hypothetical protein	A0A0U2RT81	Escherichia_phage	3.9e-47	57.7
WP_100054565.1\|3157833_3159001_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	4.3e-178	95.7
WP_012542198.1\|3159086_3159641_-	hypothetical protein	NA	NA	NA	NA
WP_012542199.1\|3159643_3159859_-	Rha family transcriptional regulator	A0A0M4QX15	Salmonella_phage	2.0e-17	57.5
WP_012542200.1\|3159960_3160350_+	helix-turn-helix domain-containing protein	A0A0M4R5D1	Salmonella_phage	6.7e-35	60.2
WP_023328115.1\|3161192_3161387_+	DUF1482 family protein	NA	NA	NA	NA
WP_077266264.1\|3161429_3161774_+	transcriptional regulator	NA	NA	NA	NA
WP_146999484.1\|3161915_3164054_+	exonuclease	S4TNL0	Salmonella_phage	1.2e-96	41.5
WP_012542206.1\|3164106_3164352_+	excisionase	NA	NA	NA	NA
WP_114692786.1\|3164332_3165460_+\|integrase	tyrosine-type recombinase/integrase	O21925	Phage_21	4.7e-121	59.3
WP_114692785.1\|3165493_3166540_-	hypothetical protein	NA	NA	NA	NA
WP_004150800.1\|3166728_3167979_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	92.6
WP_032434335.1\|3168219_3168870_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
3168319:3168333	attR	NA	NA	NA	NA
WP_004150802.1\|3168886_3169345_+	NUDIX hydrolase	NA	NA	NA	NA
WP_004150803.1\|3169401_3170508_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA

DBSCAN-SWA_5

3395405 : 3488240

Salmonella_phage(58.62%)

tail,plate,lysis,protease,head,capsid,terminase,portal,integrase,tRNA

attL 3450994:3451012|attR 3488315:3488333

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032434223.1\|3395405_3396698_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.1e-93	44.5
WP_002898137.1\|3396788_3398132_-	replication-associated recombination protein RarA	G3MBE0	Bacillus_virus	7.3e-81	40.8
WP_002898132.1\|3398140_3398752_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_080463795.1\|3398874_3403149_-	DNA translocase FtsK	S5VNE3	Mycobacterium_phage	5.2e-88	49.2
WP_000228469.1\|3403284_3403779_-	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_004147787.1\|3404062_3404194_-	hypothetical protein	NA	NA	NA	NA
WP_002898019.1\|3404311_3405280_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	3.2e-62	44.0
WP_002898017.1\|3405394_3407161_+	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	W8CYL7	Bacillus_phage	2.3e-21	25.9
WP_032434221.1\|3407161_3408883_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3
WP_004141853.1\|3408909_3409629_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|3409982_3410201_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_002896522.1\|3410320_3412600_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
WP_002896520.1\|3412630_3412948_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
WP_002896516.1\|3413273_3413495_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
WP_004150848.1\|3413571_3415512_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.9e-37	40.5
WP_004191152.1\|3415508_3416624_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7
WP_004176693.1\|3416770_3418429_-	ATP-dependent endonuclease	NA	NA	NA	NA
WP_002896434.1\|3418848_3419544_+	aquaporin Z	NA	NA	NA	NA
WP_004147773.1\|3419659_3420559_+	lysine exporter LysO family protein	NA	NA	NA	NA
WP_032421663.1\|3420702_3422355_+	hydroxylamine reductase	NA	NA	NA	NA
WP_032421152.1\|3422365_3423334_+	NADH oxidoreductase	NA	NA	NA	NA
WP_002896408.1\|3423545_3423980_-	DoxX family protein	NA	NA	NA	NA
WP_004176700.1\|3424131_3425850_+	ubiquinone-dependent pyruvate dehydrogenase	NA	NA	NA	NA
WP_004209683.1\|3425888_3426890_+	low-specificity L-threonine aldolase	NA	NA	NA	NA
WP_032421150.1\|3426900_3428343_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_002896399.1\|3428430_3429444_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_004209681.1\|3429440_3430271_-	N-acetylmuramoyl-L-alanine amidase	A0A1B0UZW5	Roseobacter_phage	4.1e-05	31.6
WP_164943469.1\|3430302_3431442_-	GGDEF domain-containing protein	NA	NA	NA	NA
WP_002896394.1\|3432319_3432835_+	lipoprotein	NA	NA	NA	NA
WP_002896392.1\|3433061_3433790_+	arginine ABC transporter ATP-binding protein ArtP	G9BWD6	Planktothrix_phage	1.2e-29	37.1
WP_002896390.1\|3433810_3434542_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002896386.1\|3434548_3435265_+	arginine ABC transporter permease ArtQ	NA	NA	NA	NA
WP_020323879.1\|3435264_3435933_+	arginine ABC transporter permease ArtM	NA	NA	NA	NA
WP_002896384.1\|3436116_3436848_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002896382.1\|3436934_3438407_-	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	7.9e-28	31.8
WP_002896380.1\|3438403_3439120_-	response regulator transcription factor	W8CYM9	Bacillus_phage	2.1e-34	36.9
WP_032421147.1\|3439198_3440326_-	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	A0A2K5B251	Erysipelothrix_phage	1.3e-19	25.6
WP_002896376.1\|3440367_3440856_-	DUF2593 family protein	NA	NA	NA	NA
WP_002896372.1\|3440913_3441759_-	putrescine ABC transporter permease PotI	NA	NA	NA	NA
WP_032421146.1\|3441755_3442709_-	putrescine ABC transporter permease PotH	NA	NA	NA	NA
WP_002896370.1\|3442719_3443853_-	putrescine ABC transporter ATP-binding subunit PotG	G3M9Y6	Bacillus_virus	2.2e-30	34.9
WP_032421145.1\|3444016_3445129_-	spermidine/putrescine ABC transporter substrate-binding protein PotF	NA	NA	NA	NA
WP_002896365.1\|3445477_3445957_-	YbjN domain-containing protein	NA	NA	NA	NA
WP_002896363.1\|3446045_3446948_-	30S ribosomal protein S6--L-glutamate ligase	A0A1D7SR78	Cyanophage	2.0e-34	35.3
WP_032421144.1\|3447062_3447785_-	nitroreductase NfsA	NA	NA	NA	NA
WP_023279664.1\|3447768_3448056_-	YbjC family protein	NA	NA	NA	NA
WP_002896352.1\|3448258_3448522_+	GrxA family glutaredoxin	A0A2I7SAE2	Vibrio_phage	1.6e-27	73.1
WP_002896351.1\|3448528_3448912_-	membrane protein	NA	NA	NA	NA
WP_004147745.1\|3449178_3450864_+	aspartate:alanine antiporter	NA	NA	NA	NA
WP_004226292.1\|3450855_3450978_-	hypothetical protein	NA	NA	NA	NA
3450994:3451012	attL	NA	NA	NA	NA
WP_000972391.1\|3451084_3451303_-	transcriptional activator Ogr/delta	Q53ZE7	Salmonella_virus	7.5e-20	69.0
WP_024220389.1\|3451393_3452494_-	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	2.9e-176	87.7
WP_000980420.1\|3452490_3452976_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	4.8e-67	80.6
WP_072664233.1\|3452972_3456050_-\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	69.2
WP_000763311.1\|3456042_3456162_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.8e-13	87.2
WP_001281009.1\|3456176_3456479_-\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	5.3e-40	89.0
WP_001207660.1\|3456533_3457049_-\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	2.1e-89	95.3
WP_117049170.1\|3457058_3458231_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	1.9e-202	89.5
WP_117049171.1\|3458337_3458751_-\|tail	phage tail protein	U5P0S4	Shigella_phage	2.6e-21	74.3
WP_114447017.1\|3458750_3460838_-\|tail	phage tail protein	A0A0A7NV63	Enterobacteria_phage	2.1e-74	41.2
WP_072664297.1\|3460834_3461440_-\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	1.3e-109	91.5
WP_095374421.1\|3461432_3462341_-\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	2.7e-143	90.4
WP_000177580.1\|3462327_3462687_-\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	3.2e-52	87.4
WP_072664299.1\|3462683_3463262_-\|plate	phage baseplate assembly protein V	A0A1S6KZX7	Salmonella_phage	1.2e-93	87.0
WP_072664300.1\|3463370_3465122_+	hypothetical protein	NA	NA	NA	NA
WP_032180470.1\|3465147_3465591_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	2.3e-55	78.8
WP_001039943.1\|3465583_3466015_-\|tail	phage tail protein	E5G6N3	Salmonella_phage	7.6e-72	93.7
WP_073535517.1\|3465977_3466136_-	hypothetical protein	A0A1S6KZX6	Salmonella_phage	5.3e-15	71.2
WP_028985447.1\|3466110_3466539_-\|lysis	LysB family phage lysis regulatory protein	E5G6N2	Salmonella_phage	6.8e-57	87.2
WP_028985446.1\|3466535_3467051_-	lysozyme	E5G6N1	Salmonella_phage	3.7e-89	92.4
WP_000171568.1\|3467031_3467247_-	hypothetical protein	E5G6N0	Salmonella_phage	1.8e-26	80.3
WP_000868192.1\|3467250_3467454_-\|tail	tail protein X	E5G6M9	Salmonella_phage	6.8e-31	91.0
WP_000673523.1\|3467453_3467918_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	6.4e-77	89.6
WP_000059191.1\|3468013_3468664_-\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	8.7e-112	96.3
WP_000742511.1\|3468667_3469726_-\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	2.9e-181	93.4
WP_028985445.1\|3469742_3470576_-\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	1.7e-123	85.9
WP_072664301.1\|3470718_3472485_+\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.3
WP_077896556.1\|3472484_3473513_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	6.5e-170	86.7
WP_001741452.1\|3473562_3475899_-	AAA family ATPase	NA	NA	NA	NA
WP_048264226.1\|3476495_3478616_-	ATPase AAA	NA	NA	NA	NA
WP_001217580.1\|3479060_3479294_-	DinI family protein	E5G6M1	Salmonella_phage	2.3e-35	98.7
WP_001154434.1\|3479304_3479493_-	hypothetical protein	E5G6M0	Salmonella_phage	5.5e-27	98.4
WP_117049173.1\|3479645_3482060_-	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	97.8
WP_000104182.1\|3482056_3482914_-	DNA adenine methylase	E5G6L8	Salmonella_phage	1.7e-160	96.8
WP_000752619.1\|3482910_3483138_-	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	3.5e-36	98.7
WP_028985772.1\|3483137_3483371_-	DUF2732 family protein	E5G6L6	Salmonella_phage	9.2e-32	96.1
WP_000963473.1\|3483438_3483780_-	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	4.6e-56	99.1
WP_000956181.1\|3483743_3483944_-	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	1.6e-32	97.0
WP_000460893.1\|3483951_3484461_-	phage regulatory CII family protein	E5G6L3	Salmonella_phage	5.8e-87	98.8
WP_000188448.1\|3484493_3484715_-	hypothetical protein	NA	NA	NA	NA
WP_000107902.1\|3484810_3485407_+	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	1.1e-39	42.4
WP_117049174.1\|3485427_3487104_+	DUF4041 domain-containing protein	A0A142LP25	Marinitoga_camini_virus	5.7e-83	67.0
WP_001447433.1\|3487259_3488240_+\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	4.8e-98	57.5
3488315:3488333	attR	NA	NA	NA	NA

DBSCAN-SWA_6

4946081 : 4991956

Escherichia_phage(42.55%)

tail,protease,holin,portal,terminase,integrase,tRNA

attL 4938455:4938471|attR 4981177:4981193

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4938455:4938471	attL	NA	NA	NA	NA
WP_164943483.1\|4946081_4947119_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_000332259.1\|4947207_4948305_+\|integrase	site-specific integrase	S5MDN5	Escherichia_phage	1.8e-210	99.2
WP_001217553.1\|4948365_4948614_+	DinI family protein	K7PLW4	Enterobacteria_phage	1.8e-38	100.0
WP_000543834.1\|4948836_4949388_+	SLATT domain-containing protein	NA	NA	NA	NA
WP_001678535.1\|4949365_4950736_+	reverse transcriptase	NA	NA	NA	NA
WP_164943484.1\|4951173_4954881_-	peptidase S74	A0A2D1UII2	Escherichia_phage	0.0e+00	84.9
WP_158124827.1\|4954945_4955545_-	Ail/Lom family outer membrane beta-barrel protein	A0A291AWV3	Escherichia_phage	2.4e-108	97.0
WP_164943485.1\|4955613_4959093_-	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	90.0
WP_153274582.1\|4959159_4959498_-	hypothetical protein	NA	NA	NA	NA
WP_164943486.1\|4959570_4960212_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	6.6e-96	85.1
WP_164943487.1\|4960109_4960853_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	9.2e-150	98.0
WP_001152612.1\|4960857_4961556_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	2.1e-132	98.7
WP_128473156.1\|4961555_4961885_-\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	3.1e-57	98.2
WP_158124716.1\|4961881_4964956_-\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	0.0e+00	94.8
WP_001161009.1\|4964927_4965257_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	7.6e-56	100.0
WP_001300035.1\|4965265_4965652_-\|tail	phage minor tail protein G	A0A291AWW5	Escherichia_phage	1.6e-65	100.0
WP_000211109.1\|4965712_4966456_-\|tail	tail protein	A0A291AWU6	Escherichia_phage	7.8e-133	100.0
WP_001079398.1\|4966467_4966869_-\|tail	tail protein	A0A291AWY2	Escherichia_phage	8.3e-73	100.0
WP_000677108.1\|4966865_4967444_-\|tail	phage tail protein	A5LH33	Enterobacteria_phage	7.2e-102	99.5
WP_001283144.1\|4967455_4967731_-	DNA breaking-rejoining protein	K7PH43	Enterobacteria_phage	8.6e-45	98.9
WP_001097050.1\|4967723_4968047_-	DUF2190 family protein	A0A291AWX2	Escherichia_phage	8.5e-52	100.0
WP_139299978.1\|4968133_4970161_-\|protease	Clp protease ClpP	A0A291AWT6	Escherichia_phage	0.0e+00	100.0
WP_000985944.1\|4970105_4971614_-\|portal	phage portal protein	A0A291AWU2	Escherichia_phage	1.6e-289	100.0
WP_001072975.1\|4971613_4971826_-	hypothetical protein	A5LH28	Enterobacteria_phage	1.1e-31	100.0
WP_029397009.1\|4971822_4973925_-\|terminase	phage terminase large subunit family protein	A0A291AWY5	Escherichia_phage	0.0e+00	100.0
WP_000349509.1\|4973924_4974416_-	DUF1441 family protein	A0A291AWV8	Escherichia_phage	1.3e-72	87.2
WP_000738423.1\|4975746_4976040_+	increased serum survival lipoprotein Iss	K7PL54	Enterobacteria_phage	2.0e-44	91.8
WP_000092283.1\|4976071_4976533_-	prophage endopeptidase RzpD	A0A0K2FJD0	Enterobacteria_phage	9.2e-76	98.7
WP_001197760.1\|4976529_4977006_-	glycoside hydrolase family protein	K7PKV2	Enterobacteria_phage	2.5e-84	95.6
WP_001120490.1\|4977009_4977336_-\|holin	phage holin, lambda family	U5P0K7	Shigella_phage	2.6e-56	98.1
WP_052908685.1\|4977412_4978465_-	site-specific DNA-methyltransferase	A5LH81	Enterobacteria_phage	4.4e-206	98.9
WP_000917724.1\|4978615_4978819_-	hypothetical protein	A0A291AWX6	Escherichia_phage	6.1e-32	100.0
WP_000357056.1\|4979138_4980158_+	hypothetical protein	A0A0R6PIZ6	Moraxella_phage	2.4e-39	32.5
WP_080086273.1\|4980172_4980553_-	antitermination protein Q	A5LH77	Enterobacteria_phage	6.1e-57	90.0
WP_032083251.1\|4980567_4981557_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.6e-194	99.4
4981177:4981193	attR	NA	NA	NA	NA
WP_032083252.1\|4981564_4982374_-	KilA-N domain-containing protein	A0A291AWU7	Escherichia_phage	1.3e-149	98.9
WP_000767113.1\|4982393_4982783_-	RusA family crossover junction endodeoxyribonuclease	A0A0P0ZD39	Stx2-converting_phage	7.1e-69	100.0
WP_000210164.1\|4982779_4983106_-	LexA family transcriptional regulator	A0A0N7KZF7	Stx2-converting_phage	9.2e-54	100.0
WP_001377816.1\|4983102_4983756_-	phage N-6-adenine-methyltransferase	A5LH72	Enterobacteria_phage	8.1e-126	98.6
WP_158124711.1\|4983755_4984250_-	PerC family transcriptional regulator	A0A291AWV6	Escherichia_phage	1.2e-86	98.8
WP_000061526.1\|4984246_4985065_-	helix-turn-helix domain-containing protein	Q8SBF1	Shigella_phage	8.9e-122	99.6
WP_001446924.1\|4985061_4985286_-	hypothetical protein	A0A291AX25	Escherichia_phage	7.0e-37	98.6
WP_032181493.1\|4985290_4986127_-	ash family protein	Q8SBF3	Shigella_phage	2.6e-137	91.7
WP_000515860.1\|4986123_4986675_-	hypothetical protein	Q8SBF4	Shigella_phage	7.6e-101	100.0
WP_000649477.1\|4986718_4986919_-	transcriptional regulator	U5P445	Shigella_phage	7.9e-32	100.0
WP_000859462.1\|4987009_4987684_+	LexA family transcriptional repressor	Q8SBF6	Shigella_phage	1.2e-132	100.0
WP_001325618.1\|4988332_4988713_+	hypothetical protein	U5P4J6	Shigella_phage	3.3e-63	100.0
WP_001753751.1\|4988778_4989603_+	DUF2303 family protein	U5P439	Shigella_phage	6.6e-149	99.3
WP_000610754.1\|4989789_4990572_+	hypothetical protein	NA	NA	NA	NA
WP_001093912.1\|4990608_4990878_+	hypothetical protein	S5MQM5	Escherichia_phage	2.5e-41	97.8
WP_000019186.1\|4990911_4991460_-	hypothetical protein	S5M7T3	Escherichia_phage	2.7e-82	89.6
WP_000287252.1\|4991482_4991956_-	SocA family protein	K4NZT7	Burkholderia_phage	2.4e-18	31.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP034322

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP034321

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection