CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP049616	Muricauda sp. 501str8 chromosome, complete genome	3 crisprs	csa3,PD-DExK,cas3,DEDDh,WYL,c2c10_CAS-V-U3	0	0	2	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP049616_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049616_1

1413477-1413575

Orphan

Consensus_repeat	Method
ACGCTCTAACCACCTGAGCTACCTCGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP049616_1

>merge|NZ_CP049616|1|1413477-1413575|CRISPRCasFinder
ACGCTCTAACCACCTGAGCTACCTCGCCATTTACTACAATATTTCAATTTTGTCTCCGGGTTATGAATCCGACGCTCTAACCAGCTGAGCTACCTCGCC

>NZ_CP049616|1|1|1413477-1413575|CRISPRCasFinder
ACGCTCTAACCACCTGAGCTACCTCGCC	ATTTACTACAATATTTCAATTTTGTCTCCGGGTTATGAATCCG
ACGCTCTAACCAGCTGAGCTACCTCGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049616.1\|WP_116183677.1\|1411293_1412073_+\|PRTRC-system-ThiF-family-protein	unknown	unknown	gnl\|CDD\|163448
NZ_CP049616.1\|WP_116183675.1\|1412769_1413096_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049616.1\|WP_166247895.1\|1416123_1417086_-\|methionyl-tRNA-formyltransferase	unknown	unknown	gnl\|CDD\|234567
NZ_CP049616.1\|WP_166247894.1\|1414993_1415554_-\|YqgE/AlgH-family-protein	unknown	unknown	gnl\|CDD\|376864
NZ_CP049616.1\|WP_166247896.1\|1417066_1418959_-\|RecQ-family-ATP-dependent-DNA-helicase	unknown	unknown	gnl\|CDD\|223588
NZ_CP049616.1\|WP_166247892.1\|1413713_1414097_+\|SRPBCC-domain-containing-protein	unknown	unknown	gnl\|CDD\|176856
NZ_CP049616.1\|WP_166247898.1\|1419609_1419897_+\|DUF493-family-protein	unknown	unknown	gnl\|CDD\|377327
NZ_CP049616.1\|WP_116183680.1\|1409292_1409514_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|316934
NZ_CP049616.1\|WP_116183674.1\|1413092_1413344_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049616.1\|WP_014034238.1\|1415674_1415947_-\|HU-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|259853
NZ_CP049616.1\|WP_116183679.1\|1409550_1410594_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049616.1\|WP_166247900.1\|1420641_1421949_+\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|236486
NZ_CP049616.1\|WP_166247899.1\|1419978_1420626_+\|DUF4290-domain-containing-protein	unknown	unknown	gnl\|CDD\|379482
NZ_CP049616.1\|WP_116183681.1\|1408807_1409296_+\|PRTRC-system-protein-E	unknown	unknown	gnl\|CDD\|274758
NZ_CP049616.1\|WP_166247893.1\|1414151_1414997_+\|aminotransferase-class-IV	unknown	unknown	gnl\|CDD\|376449
NZ_CP049616.1\|WP_116183678.1\|1410596_1411304_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373078
NZ_CP049616.1\|WP_116183676.1\|1412110_1412764_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049616.1\|WP_116183682.1\|1407607_1408492_-\|DUF488-family-protein	unknown	unknown	gnl\|CDD\|377317
NZ_CP049616.1\|WP_166247897.1\|1418958_1419522_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379235
NZ_CP049616.1\|WP_067030397.1\|1406781_1407603_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP049616.1\|WP_116183677.1\|1411293_1412073_+\|PRTRC-system-ThiF-family-protein	gnl\|CDD\|163448	TIGR03736, PRTRC_ThiF, PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.	2.79809e-58
NZ_CP049616.1\|WP_166247895.1\|1416123_1417086_-\|methionyl-tRNA-formyltransferase	gnl\|CDD\|234567	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed.	1.21657e-160
NZ_CP049616.1\|WP_166247894.1\|1414993_1415554_-\|YqgE/AlgH-family-protein	gnl\|CDD\|376864	pfam02622, DUF179, Uncharacterized ACR, COG1678.	1.3482e-56
NZ_CP049616.1\|WP_166247896.1\|1417066_1418959_-\|RecQ-family-ATP-dependent-DNA-helicase	gnl\|CDD\|223588	COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair].	6.75522e-145
NZ_CP049616.1\|WP_166247892.1\|1413713_1414097_+\|SRPBCC-domain-containing-protein	gnl\|CDD\|176856	cd07814, SRPBCC_CalC_Aha1-like, Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity, and may regulate the dwell time of Hsp90 with client proteins. Aha1 can act as either a positive or negative regulator of chaperone-dependent activation, depending on the client protein, but the mechanisms by which these opposing functions are achieved are unclear. Aha1 is upregulated in a number of tumor lines co-incident with the activation of several signaling kinases.	0.00109119
NZ_CP049616.1\|WP_166247898.1\|1419609_1419897_+\|DUF493-family-protein	gnl\|CDD\|377327	pfam04359, DUF493, Protein of unknown function (DUF493). This domain is likely to act in a regulatory capacity like pfam01842 domains. This domain has a remarkable property in that the C-terminal residue of every protein in the family lies up in the alignment. This suggests that the C-terminal residue plays some important functional role (Bateman A pers obs).	3.21365e-05
NZ_CP049616.1\|WP_116183680.1\|1409292_1409514_+\|hypothetical-protein	gnl\|CDD\|316934	pfam14454, Prok_Ub, Prokaryotic Ubiquitin. A Ubiquitin-superfamily protein that is present across several bacterial lineages, and found in gene neighborhoods with components of the ubiquitin modification system such as the E1, E2 and JAB proteins, and a novel alpha-helical protein, which is predicted to be enzymatic.	2.36597e-13
NZ_CP049616.1\|WP_014034238.1\|1415674_1415947_-\|HU-family-DNA-binding-protein	gnl\|CDD\|259853	cd13831, HU, histone-like DNA-binding protein HU. This subfamily includes HU and HU-like domains. HU is a conserved nucleoid-associated protein (NAP) which binds non-specifically to duplex DNA with a particular preference for targeting nicked and bent DNA. It is highly basic and contributes to chromosomal compaction and maintenance of negative supercoiling, thus often referred to as histone-like protein. HU can induce DNA bends, condense DNA in a fiber and also interact with single stranded DNA. It contains two homologous subunits, alpha and beta, typically forming homodimers (alpha-alpha and beta-beta), except in E. coli and other enterobacteria, which form heterodimers (alpha-beta). In E. coli, HU binds uniformly to the chromosome, with a preference for damaged or distorted DNA structures and can introduce negative supercoils into closed circular DNA in the presence of topoisomerase I. Anabaena HU (AHU) shows preference for A/T-rich region in the center of its DNA binding site.	7.8929e-39
NZ_CP049616.1\|WP_166247900.1\|1420641_1421949_+\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	gnl\|CDD\|236486	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated.	0
NZ_CP049616.1\|WP_166247899.1\|1419978_1420626_+\|DUF4290-domain-containing-protein	gnl\|CDD\|379482	pfam14123, DUF4290, Domain of unknown function (DUF4290). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 221 amino acids in length. There are two conserved sequence motifs: EYGR and KLWD.	3.71419e-111
NZ_CP049616.1\|WP_116183681.1\|1408807_1409296_+\|PRTRC-system-protein-E	gnl\|CDD\|274758	TIGR03741, PRTRC_E, PRTRC system protein E. A novel genetic system characterized by six or seven major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family averages about 150 amino acids in length, but the last third contains low-complexity sequence that complicates sequence comparisons. This model does not include the low-complexity region.	3.02707e-08
NZ_CP049616.1\|WP_166247893.1\|1414151_1414997_+\|aminotransferase-class-IV	gnl\|CDD\|376449	pfam01063, Aminotran_4, Amino-transferase class IV. The D-amino acid transferases (D-AAT) are required by bacteria to catalyze the synthesis of D-glutamic acid and D-alanine, which are essential constituents of bacterial cell wall and are the building block for other D-amino acids. Despite the difference in the structure of the substrates, D-AATs and L-ATTs have strong similarity.	9.48041e-51
NZ_CP049616.1\|WP_116183678.1\|1410596_1411304_+\|hypothetical-protein	gnl\|CDD\|373078	pfam14460, Prok-E2_D, Prokaryotic E2 family D. A member of the E2/UBC superfamily of proteins found in several bacteria. Members of this family lack the conserved histidine of the classical E2-fold. However, they have an absolutely conserved histidine carboxyl-terminal to the conserved cysteine. Members of this family are usually present in a conserved gene neighborhood with genes encoding members of the Ub modification pathway such as the E1, Ub and JAB proteins. These neighborhoods also contain a gene encoding a rapidly diverging alpha-helical protein.	1.29298e-22
NZ_CP049616.1\|WP_116183682.1\|1407607_1408492_-\|DUF488-family-protein	gnl\|CDD\|377317	pfam04343, DUF488, Protein of unknown function, DUF488. This family includes several proteins of uncharacterized function.	2.11487e-29
NZ_CP049616.1\|WP_166247897.1\|1418958_1419522_-\|ATP-binding-protein	gnl\|CDD\|379235	pfam13521, AAA_28, AAA domain.	1.71534e-41

>NZ_CP049616.1|WP_116183674.1|1413092_1413344_+|hypothetical-protein
MTMYAHLITIFRKIDPEKLYWEFTYFEERSFQSAAFGARKKELFKIDGKFYRVDIVEKISPLKQLPNLVVKHGRHTIFRDYVE
>NZ_CP049616.1|WP_116183675.1|1412769_1413096_+|hypothetical-protein
MKTNKKNRSNIKEQHYGTIHNFVYHNERTGLYGKKLEALYRLVQWKGKPLDFPTDHKFYNVKVIEYADRDFIGFIRTGFSKKAFFPCKLQTVALRLLGNTGKSKAPLQ
>NZ_CP049616.1|WP_116183676.1|1412110_1412764_+|hypothetical-protein
METLHYKGYEIKIERDDFPQNPLRDWDGHVLFCLNHKRYDLHNNTDFDTNEFESWEAIREAIEDEYCPLAILSVFMYDHGGITIKTSPFICCWDSSQIGFAFIDIPTLKQWGLRAGDKTAKELEEMIRDNVRLYDDYLTGNVFGYSIADSSGNTLDSCYGYYGDLGKEDMIGEAKSNDEHYLRQKIVKHAIKVKRWIRSQVPLIYRQSIGQIHFYSK
>NZ_CP049616.1|WP_116183677.1|1411293_1412073_+|PRTRC-system-ThiF-family-protein
MKTRIHFAPNYFYNPTHPITIALIGVGGTGSLMLARLARMDFALRQIGHPGLHIIAYDSDMVENNNVGRQLYALSDVGEYKVVNAVNKVNIAFGLQWEGIPMDALPDGEDIRANIIITCVDNARFRTLLSKSLAFPFKGSEYQSMFYWLDIGNCRDSGQFVLGTLFEEERNMEREDFEMVDKLKNIIDFFPDLDAHDIPRLQGAGCAYSDKLNEQSLFINDVLVAHASDCLFRLLYHKQIQKHGAFVNLESGKVNSILV
>NZ_CP049616.1|WP_116183678.1|1410596_1411304_+|hypothetical-protein
MEQIANLRPDEHFLPKFAIIGYSQEEDYYNRGHYFSYHNIVGAKLTAGMPLTKDTARNLFRCLEGDLIKFRFKGMLPKNLIHFDFKGNLQLVWYVHPKQHTLYFDTRTGIASGNYPLPKLIFKLEGNTLKVFALHRKDTLTDTVSLYHAPLLNVGRQGNVCMGNASMDYDGFDYYEDIMGFVEQQFFRSVFTATHHNNIAKGNIVDVMKRNFRKTFFDDALLKKNKLTLKDLYEN
>NZ_CP049616.1|WP_116183679.1|1409550_1410594_+|hypothetical-protein
MHPQTDTPFIERTQRVPRPIVQGGSTIPLQVRNAKTESLATKGFSLSDLSVLPILSKPIIEDGSSVDIKALASLMVDATRNFSGNIDDWRFSASDSLDDLILRCANRLKERARIDHIEVLREDADLRLVLKRHIGNRSTVYCIPLRPVMPLRWKNPMLFDILMSFIKSLPYINLFHTGEDRVDWLWEYLFEEEAYHRKNGSVFGNCNSVRFFGRYQKLFDEYEPQDWKFLLLKYRPRKPLHKGIKELLSKADTIDFRVPFRIGTRDAYESMFEHWESFLIVDDADSEFTRSYIEMLNECSNEYDIISAYELTTVEKGNLQPFEEGSTYKLNRLEEFLTDLNELLRLL
>NZ_CP049616.1|WP_116183680.1|1409292_1409514_+|hypothetical-protein
MMEIATIERKYIYQDGNNNAIELDDLDSQLTHQQVMEHYSQIYAELTNANIMDKGIVNGHHEIHFKTLAGTKG
>NZ_CP049616.1|WP_116183681.1|1408807_1409296_+|PRTRC-system-protein-E
MTDFFSTLRQTGIEQYGISVSFDGDSVSVSVLPKSSAKDKALQSIKPLTLRGNVTEVDEKFFQVLQKPLEQTKALFRNTVAFEKALAETEQKTQQAKKKKESTTKKVTELKQLLKEKDFNPMSDHKKATDIANEILKIDPNHKEAQKVIKDMKAYESPKLFQ
>NZ_CP049616.1|WP_116183682.1|1407607_1408492_-|DUF488-family-protein
MFYRRKLVFALLEKFEDGLESTRLQKLMFLLTQMQKEPNYDFVPYRYGCYSYSLKADLAAMVKHDWLVESEKTYSLNVKKKYYKELTPVDKQLVNETFELYGSMKTDVITKHTYINFPYYATNSIIAERILPEKFFERVVTARHNDESTVLFTIGYEGISLEEYLNRLLKNNVHLLVDVRRNPLSQKYGFSKKSLSSFCSRLGIEYIHIPDVGIDSSKRRELNTQEDYDLLFDEYKATVLKEAIESQNFILSLLEKHRRIALTCFEADTCQCHRTHLAENLKKSPNFKYDLKHI
>NZ_CP049616.1|WP_067030397.1|1406781_1407603_-|hypothetical-protein
MALTKVLITVKTYPSLSAKYGELVCTAGFLEDGSWIRLYPIPFRKLKKDEKYTKYQWIELDIVNNDKDFRPESFRPATIDTPITLLNTIDTKGNWYKRKQIVLGKVYTDIKALIAEAHDKDICTSLAVFKPAKVTDFKVEKVSAEWDKKKLDEQKALQEQGNLFEMEEEPFEVVAKLPYKFSYVIEDENGVSSTMMIEDWEIGALFRNTLAAAEGNEAVAVEKVRQKYFDYFALKKDLHLYLGTTKAFHYRSKNPFMIIGTFTPGIEIQTSLF
>NZ_CP049616.1|WP_166247892.1|1413713_1414097_+|SRPBCC-domain-containing-protein
MSDKVKFELEFVIQASPQLLYQYISTPSGLSEWYADNVNSRGEIFTFIWDGAEERAKLLKRKSEEFVKLAWEENEDGSFFEMRIIVDEITKDVSLFITDFAEDDEVDEAKMLWENQVSDLKQVLGST
>NZ_CP049616.1|WP_166247893.1|1414151_1414997_+|aminotransferase-class-IV
MVNYNGELLAGDKAIFTGNNRAFKYGDALFESVRYVNGTLFFWEDHYFRLMASMRILRMEIPMEFTMEFLEEEIKKTITSNQLDSGAVRVRLSVFRNEGGLYTPSTNDVSYFIETRTMESPFFILNEGNYEVELFKDYYLNKDMLSNLKSTNKILNVVAGVYAKENNYANCLLVNTDKKVVEAINGNLFLVKGNEIKTPPLSDGCLDGIIRKNLMKIIAGSEEYDLVEDSISPFELQKVDELFITNSIVGIQPISKYRKKEYQAKVAKSLVGKLNAKARIG
>NZ_CP049616.1|WP_166247894.1|1414993_1415554_-|YqgE/AlgH-family-protein
MVSQKPKKGNLLVAEPSLTGDVSFNRSVVLIAEHNHEGSVGFILNKPLDYTICDLVSDITIPFQVFNGGPVEQDNLYFIHKVPELIENSIEISDGIFWGGNFEMTVDLINSGTITEQDIRFFLGYSGWGTSQLDQELSSKSWVVLPNEYESSILEKAANVFWKEKMMELGGDYVLWSNAPENPSLN
>NZ_CP049616.1|WP_014034238.1|1415674_1415947_-|HU-family-DNA-binding-protein
MNKTELIDAMAADAGITKAAAKKALESFLGNVEGTLKKGDRVSLVGFGSWSVSKRSAREGRNPQTGATIKIAAKNVVKFKAGAELSGAVN
>NZ_CP049616.1|WP_166247895.1|1416123_1417086_-|methionyl-tRNA-formyltransferase
MSTSKNNPLRIVFMGTPDFAVGTLKNILEADFNVVGVITAPDRPAGRGRKVQESAVKQFAVEHNLKVLQPTNLKDEDFLEELKALDANLQVVVAFRMLPKAVWQMPEYGTFNLHASLLPQYRGAAPINWAIINGETETGVTTFFIDEKIDTGNIVLQKTEKILPTDSVGDLHDRLMEIGADLVVETCKQIEAGTVTRQPQNESNTLKPAPKIHKDTCRIDWNASMEAIYNHIRGLSPYPGAWTMLVNDGKEDQMKIFKTEKLQEDHDHSAGQILVDKKSFKVAVDGGYISLLELQLPGKRRMQVNEVLNGLNLENDALLR
>NZ_CP049616.1|WP_166247896.1|1417066_1418959_-|RecQ-family-ATP-dependent-DNA-helicase
MHKDTTGILKQFWGYDDFRGSQKQIINTVLSGQDVLALMPTGGGKSICYQVPALAKEGICIVVSPLVALIQDQVSQLKKRNIKAIALTGGIPPSELNDLLDNCVYGNYKFLYLSPERLQQTIVQERIQQMNINLIAIDEAHCISQWGNDFRPAYLGCSILKELVPDIPMMALTATATPRVVEDIVENLELENVEIFKDSFSRSNIAFKVKHSEDKLYQLKKYMDRVSGSAIVYVRSRKMSISLANFLIKNGISASFFHGGIPKSDKEEKLNLWLSGKVRVMVATNAFGMGVDKPDVRLVIHYQIPDSLESYFQEAGRAGRDGIVSTAIIITSKEDENKAKQQFLSSLPDVAFVKQVYSKLNNYFQISYGELVSEPLAFKFNAFCKRYDFNPNMTFNAIWILDQNSVLSLAENFKEKTTLQFTASKTEIFNYLDKNRKTAPIIQTILRTYGGITEYETKINLYMLSQKTSTGEARLKEILQRLADDSIVEYQNNTSDLEITFLVPREDDHTINLFAKKIKDFNQVKQNNMAAMLGYVSNKKLCRSLYLLNYFGEKTSEKCGTCDICTKKARTASPHDLENRVMELLEIRPHTSRQLEKAIGAKEKELLRTLERLLEDERVSLNFKNEYIKK
>NZ_CP049616.1|WP_166247897.1|1418958_1419522_-|ATP-binding-protein
MGKKKIVITGAPGTGKTSIVNGLESMGYHCFHEIIRDMTSKAKNEGQTEHYISNPLVFVDDALQFNKDLLEGRTSHYRQSLKIDAPISFFDRGIPDVLAYMDFFGQEYDDFFTSACKDHRYDSIFIVPPWKEIYVSDNERMETFEEAESIHDSLMKTYTQFGYNPIEVPKDEVQNRIDFILETLKKL
>NZ_CP049616.1|WP_166247898.1|1419609_1419897_+|DUF493-family-protein
MDNKDTEEFYAKLKDQLLESTSWPSTYLYKFIVPTDEQRISQIQDIFDNTGAVIESKKSKKGNYTSLSITVNLKDPDAVIEKYKEVSVVEGVISL
>NZ_CP049616.1|WP_166247899.1|1419978_1420626_+|DUF4290-domain-containing-protein
MNEIFNLEYNTERPKLFIPEYGRHFQKMVDHAVAIEDRDERNRVAKSIISVMGNLQPHLRDVPDFQHKLWDQLFIMADFKLDVDSPFPITSQEVLQQRPEPLDYPQNHPKYRFYGNNIKRMIDVAVNWEKGDMRSGLEYAIANHMKKCYLVWNKDTVEDSVIFNHLKELSDGQIDLAKSDESLTESGQFLKNKPSRSNNNNNRGKKGQRGRKKRY
>NZ_CP049616.1|WP_166247900.1|1420641_1421949_+|UDP-N-acetylglucosamine-1-carboxyvinyltransferase
MGTFRIEGGHQLHGEITPQGAKNEALQILCAVLLSEEKITIHNIPDIVDVNKLIALLEDLGVKIQKKGKGSYTFKADDVNLDYLQSAKFKEDGRGLRGSIMLVGPLLARFGKGYIPKPGGDKIGRRRLDTHFEGFIKLGAQFRYNKEDYFYGVEADKLKGTYMLLDEASVTGTANIVMAAVLAEGTTTIYNAACEPYLQQLCKMLNRMGAKISGIGSNLLTIEGVDSLGGTEHTMLPDMIEIGSWIGLAAMTQSELTIKNVSWDDLGVIPNVFRKLGITVERKGDDIFIPKHEDGYEIQNFIDGSILTIADAPWPGLTPDLLSIILVVATQARGEVLIHQKMFESRLFFVDKLIDMGAKIILCDPHRATVIGHDFQSTLKATTMVSPDIRAGVSLLIAALSAKGTSTIHNIEQIDRGYENIDERLRAIGANIVRV

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP049616_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049616_2

2287609-2287694

Orphan

Consensus_repeat	Method
AATCGGAAAATATCCGATTATGT	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NZ_CP049616_2

>merge|NZ_CP049616|2|2287609-2287694|CRISPRCasFinder
AATCGGAAAATATCCGATTATGTGTTTAATATTTTACATTTTATTGTTATTTTTATGATACTTAATCGGAAAATATCCGATTATCT

>NZ_CP049616|2|2|2287609-2287694|CRISPRCasFinder
AATCGGAAAATATCCGATTATGT	GTTTAATATTTTACATTTTATTGTTATTTTTATGATACTT
AATCGGAAAATATCCGATTATCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049616.1\|WP_166248584.1\|2283963_2284989_+\|mobilization-protein	unknown	unknown	unknown
NZ_CP049616.1\|WP_166248583.1\|2283373_2283961_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049616.1\|WP_166250465.1\|2285075_2286617_+\|type-IV-secretory-system-conjugative-DNA-transfer-family-protein	unknown	unknown	gnl\|CDD\|226036
NZ_CP049616.1\|WP_166248582.1\|2282392_2282842_+\|JAB-domain-containing-protein	unknown	unknown	gnl\|CDD\|163702
NZ_CP049616.1\|WP_166248579.1\|2281270_2281465_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049616.1\|WP_166248586.1\|2288346_2289204_+\|nucleotidyl-transferase-AbiEii/AbiGii-toxin-family-protein	unknown	unknown	gnl\|CDD\|378065
NZ_CP049616.1\|WP_166248590.1\|2293304_2294315_-\|inositol-2-dehydrogenase	unknown	unknown	gnl\|CDD\|275173
NZ_CP049616.1\|WP_166248594.1\|2298391_2300251_-\|3D-(3,5/4)-trihydroxycyclohexane-1,2-dione-acylhydrolase-(decyclizing)	unknown	unknown	gnl\|CDD\|275170
NZ_CP049616.1\|WP_036379075.1\|2276589_2276973_-\|winged-helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NZ_CP049616.1\|WP_166248585.1\|2287711_2288350_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049616.1\|WP_166248580.1\|2281461_2281872_+\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|366099
NZ_CP049616.1\|WP_166248589.1\|2291474_2292431_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049616.1\|WP_166248588.1\|2291016_2291478_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049616.1\|WP_166248578.1\|2279027_2280593_+\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225718
NZ_CP049616.1\|WP_166248593.1\|2296756_2298355_-\|solute:sodium-symporter-family-transporter	unknown	unknown	gnl\|CDD\|236699
NZ_CP049616.1\|WP_166248587.1\|2289493_2290657_+\|IS4-family-transposase	unknown	unknown	gnl\|CDD\|372999
NZ_CP049616.1\|WP_036385944.1\|2277057_2278332_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271185
NZ_CP049616.1\|WP_166248591.1\|2294331_2295237_-\|TIM-barrel-protein	unknown	unknown	gnl\|CDD\|275172
NZ_CP049616.1\|WP_166248592.1\|2295247_2296720_-\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143404
NZ_CP049616.1\|WP_166248581.1\|2281936_2282317_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP049616.1\|WP_166248587.1\|2289493_2290657_+\|IS4-family-transposase	gnl\|CDD\|372999	pfam14294, DUF4372, Domain of unknown function (DUF4372). This domain family is found in bacteria, and is approximately 80 amino acids in length. The family is found in association with pfam01609. There is a single completely conserved residue G that may be functionally important.	4.19743e-34
NZ_CP049616.1\|WP_166250465.1\|2285075_2286617_+\|type-IV-secretory-system-conjugative-DNA-transfer-family-protein	gnl\|CDD\|226036	COG3505, VirD4, Type IV secretory pathway, VirD4 components [Intracellular trafficking and secretion].	2.11854e-15
NZ_CP049616.1\|WP_166248582.1\|2282392_2282842_+\|JAB-domain-containing-protein	gnl\|CDD\|163702	cd08071, MPN_DUF2466, Mov34/MPN/PAD-1 family. Mov34 DUF2466 (also known as DNA repair protein RadC) domain of unknown function contains the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity. However, to date, the name RadC has been misleading and no function has been determined.	2.92446e-44
NZ_CP049616.1\|WP_166248593.1\|2296756_2298355_-\|solute:sodium-symporter-family-transporter	gnl\|CDD\|236699	PRK10484, PRK10484, putative transporter; Provisional.	0
NZ_CP049616.1\|WP_166248590.1\|2293304_2294315_-\|inositol-2-dehydrogenase	gnl\|CDD\|275173	TIGR04380, hypothetical_protein_HOLDEFILI_04020, inositol 2-dehydrogenase. All members of the seed alignment for this model are known or predicted inositol 2-dehydrogenase sequences co-clustered with other enzymes for catabolism of myo-inositol or closely related compounds. Inositol 2-dehydrogenase catalyzes the first step in inositol catabolism. Members of this family may vary somewhat in their ranges of acceptable substrates and some may act on analogs to myo-inositol rather than myo-inositol per se. [Energy metabolism, Sugars].	3.81875e-159
NZ_CP049616.1\|WP_166248594.1\|2298391_2300251_-\|3D-(3,5/4)-trihydroxycyclohexane-1,2-dione-acylhydrolase-(decyclizing)	gnl\|CDD\|275170	TIGR04377, 3D-35/4-trihydroxycyclohexane-12-dione_hydrolase, 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase. Members of this protein family, 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase (iolD), represent one of eight enzymes in a pathway converting myo-inositol to acetyl-CoA. IolD hydrolyzes the cyclic molecule 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione to yield 5-deoxy-D-glucuronic acid. TPP is a cofactor. [Energy metabolism, Sugars].	0
NZ_CP049616.1\|WP_036379075.1\|2276589_2276973_-\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	3.02339e-17
NZ_CP049616.1\|WP_166248580.1\|2281461_2281872_+\|single-stranded-DNA-binding-protein	gnl\|CDD\|366099	pfam00436, SSB, Single-strand binding protein family. This family includes single stranded binding proteins and also the primosomal replication protein N (PriB). PriB forms a complex with PriA, PriC and ssDNA.	9.04029e-38
NZ_CP049616.1\|WP_166248578.1\|2279027_2280593_+\|Fic-family-protein	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	2.22492e-14
NZ_CP049616.1\|WP_036385944.1\|2277057_2278332_-\|site-specific-integrase	gnl\|CDD\|271185	cd01185, INTN1_C_like, Integrase IntN1 of Bacteroides mobilizable transposon NBU1 and similar proteins, C-terminal catalytic domain. IntN1 is a tyrosine recombinase for the integration and excision of Bacteroides mobilizable transposon NBU1 from the host chromosome. IntN1 does not require strict homology between the recombining sites seen with other tyrosine recombinases. This family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	6.37487e-60
NZ_CP049616.1\|WP_166248591.1\|2294331_2295237_-\|TIM-barrel-protein	gnl\|CDD\|275172	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase. Members of this family include the enzyme myo-inosose-2 dehydratase, product of the gene iolE, as found in inositol utilization cassettes in many species. [Energy metabolism, Sugars].	1.38577e-60
NZ_CP049616.1\|WP_166248592.1\|2295247_2296720_-\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	gnl\|CDD\|143404	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.	0
NZ_CP049616.1\|WP_166248586.1\|2288346_2289204_+\|nucleotidyl-transferase-AbiEii/AbiGii-toxin-family-protein	gnl\|CDD\|378065	pfam08843, AbiEii, Nucleotidyl transferase AbiEii toxin, Type IV TA system. This family was recently identified as belonging to the nucleotidyltransferase superfamily. AbiEii is the cognate toxin of the type IV toxin-antitoxin 'innate immunity' bacterial abortive infection (Abi) system that protects bacteria from the spread of a phage infection. The Abi system is activated upon infection with phage to abort the cell thus preventing the spread of phage through viral replication. There are some 20 or more Abis, and they are predominantly plasmid-encoded lactococcal systems. TA, toxin-antitoxin, systems on plasmids function by killing cells that lose the plasmid upon division. AbiE phage resistance systems function as novel Type IV TAs and are widespread in bacteria and archaea. The cognate antitoxin is pfam13338.	1.23376e-21

>NZ_CP049616.1|WP_166250465.1|2285075_2286617_+|type-IV-secretory-system-conjugative-DNA-transfer-family-protein
MLLFQYVHRRGGLIVTGLFTLDSALFVYFLDWIIVAPLLLYALLPSLFLNMLIGLLFHIHEDEDTIPPKYQARLPLRSGALTLKNIRRGISIIGSAGSGKTESVVNALLRHFQKHGFCGVIHDYKHFEITELAYPLFKDQGIPFHIVSFDTIHQRVNPIAPRYLPDEESVNEVSRVLLENLLEQRESVAQGASKFFNDAVEGLLGGLIWMLRTHHPKYCTLPHLIAVYQLLEPDHLIQWLSQDLVAKAMADAFIAGRASERQTAGVLSTLANALKKISTRRIFMALSADEVDLDINNPEHPAILSIVNHPKFETAYSPIIATILHTVIKQMSLRGQRHSFVLMEEAPTIRLLNMHRIPATLRSYDITTVYVMQDKAQNDMMYGDKASRAILSNLSYQFFGKANDPDTAYYYERFFELVKKPLRSVSKKVDFMASDTRITNIEREVGKVRSEEFFRLKQGEFIAFSDGKDRKVRFPVPKAERDLPHLKFTSDSPEIAANFNRIHLEVKGLFQKP
>NZ_CP049616.1|WP_166248584.1|2283963_2284989_+|mobilization-protein
MYITITRQHLGETFSQSSADFVNYLEKENKALSPEQQEPFFNQQQDHIDPKTVVQEIDANTDRLKQSEPKFYSLTINPSQRELAAIQNDPEKLKAYVREIMKDYAASFYRKEPVQVEQLKYFAKIEKERTYSGRDREIRENRPYRAQIAKLQNDLAKVNRGALQGNPKHIQRDIDRLYKQMPHKLDGKPITAGMQKPGSQTHVHIVMSRKDVTNTYSLSPGSSYRESEVQLHGKTVKRGFRRDQFFDKAEKTFDRMFKYNRNYVESYKARKTLDKDPKAYFSKIMGLPASKRAVALKLLSKTGAKVPLPNIPTSKVAIARKTIARLQKAAALARKASSIEI
>NZ_CP049616.1|WP_166248583.1|2283373_2283961_+|hypothetical-protein
MGTESFSNIRFKKETARRFQSFSRMYYKTHTLALSGMLDFFKYNEISPHENLGKRMGLIMDFLQKFRDFTAKRNNATIAIIKDLEKHGIMPTKAMMELLFEGGPTSSTQKAGDIPKAELVIPEIQGMDLDTEFALLEERKQHQLLEQELAQLKTLINEQLLNRVKVIRPTLGTPRLQLDMTLSEWKAVQEHFKIP
>NZ_CP049616.1|WP_166248582.1|2282392_2282842_+|JAB-domain-containing-protein
MIFKVNEIKISYREHTRISQTPQLSSSRDVAALLHQNWDADTLALKESFKILLLNNSNRVKGTYQVSDGGITGTVVDLRILFAVVLKTLSVGIILAHNHPSGNLKPSQPDKQLTQKIKRAAALFDIKVLDHLIIVPNGDYFSFADNGLL
>NZ_CP049616.1|WP_166248581.1|2281936_2282317_+|hypothetical-protein
METNSQHLKEQLSQFCGSQQIFTLPLCRTRYTEGIQFLAQTANAFWLLTDASIMGRSLKDKSRFITIDFKRYSPSEVETHGHDAVITYTDGNGTVLARQQYHFTDFPLEQIRLFFVDNTLLLPSEY
>NZ_CP049616.1|WP_166248580.1|2281461_2281872_+|single-stranded-DNA-binding-protein
MSNFRNHVQLIGNVGEDPKITLLDGGRKVARFPMATNEHYTNNQGEKIQNTDWHQVVAWGKTADILEKYTAKGSEIGVQGKIKTRSYTTEDGNQRYVTEIIADEVLLMGPKAAQEDSQSKTPKSKTAKKTSTKKDA
>NZ_CP049616.1|WP_166248579.1|2281270_2281465_+|hypothetical-protein
MKSYTSHISEAAQNLQKKEDAPDTISKSVAFGFCCIAAGDVVRSVNQEFNYFLTARFGHKSFQS
>NZ_CP049616.1|WP_166248578.1|2279027_2280593_+|Fic-family-protein
MLKSAHFSFVAPVFNGVVLPEEGIISGYAAIIHKLGLAVPLPIPFTVVSLKNKRIKDKSFTYLPKSYEVDDSLELSEVEALYKHLVFALKYEGVNLLTFSALTKHYTEDELTQLVSIEPTGQYSRRIWFLVEWLMQRELSGISDLSKKSYVDVIDTKQQFGIKGIRSPRQMVNNNLPGTVDFCPLIRRTALLEQYINEKLSNKNSAYLKGIRKNILRRAAAFLLLKDSKASFTIEGESPKSKRAARWGQAIGQAGMTDLSHNEFERLQQLVIENPRFIEMGYRKKGGFIGERDRDTFSPVPDHISAKHEDIQQLMTGLLETSQKLLDNEMDAVLAAASISFGFVFIHPFADGNGRIHRYLIHHVLAKKQFSEQGLIFPVSASILSHIGDYQKVLEGYSIPLLDFIDWKETGDHNVEVINETIDYYRYFDVTPQAEFLYSCVKDTIENIIPNEVNYLGKYEEFKYYIDNTYEMPDDMVSLLVSFLEQNDGSLSKRAKKKEFVQLSESEIKDIEYRYNLIFNS
>NZ_CP049616.1|WP_036385944.1|2277057_2278332_-|site-specific-integrase
MNTSNSFSISFWLKKSGRKKDGRFPIYVRIRCKGKNADLSVHRSTFEERWCPILGKMDHRASESVVVNKYLDDVRAKLLECHRQLSAESNFITAQSIKLRYLGKDKVMLTLLDLLEYNRTYELPKLAKGTVKNYSSTETYLKRFIAKKYRVPDIGLASIDYAFLIEFENFLRNCEPIKSFQTLNNNGIMKHMLRFKKLVTMAYKFDCIPKNPFNLYKVKMEDYDSAFLEEEEILALDQLEFEEKGMELVRDIFLFACYTGLSYIEIKLLNPNGIVSGIDGELWIDVKRQKTKTEVKVPLLPKAKKILEKYVDFPKNENTVLPVYSNQKVNQYLKIIAQRANIDKHLTFHVARHTFATTITLMNDVPIETVSKLLGHTKLSTTQKYARVVEKKISKDMAQLKEKLGSGQSKANDNSEYPTLKIIR
>NZ_CP049616.1|WP_036379075.1|2276589_2276973_-|winged-helix-turn-helix-transcriptional-regulator
MDKNICIRLEADAKQIMECRETMQNLENSMDSLSGIMNLMGNPVRLKILYLLNQEQRLCVCDLSDILEMNVSAISQHLRKLKDRNLITSQKEGQMIHYSLVTDHSPLLFPIFDLLDKKEQIKPVNHE
>NZ_CP049616.1|WP_166248585.1|2287711_2288350_+|hypothetical-protein
MDFRAKIKDFAEGPISRHLILELLSDYDRPNDKISELIKNNELIPIRRGLYITGPEMDLPSPEPFLIANHLRGPSYVSLETALFYWNLIPERTYEISSATIKTSKTYKTPVGRFSYHQLKLPYYSYGIKSIVYSPKQTALIASPEKALCDKIVLTPRVNLRSIKQTQQFLLDDLRMDSEILNTLNKEIMETWIENAPKKNSLKMLIKTLRVL
>NZ_CP049616.1|WP_166248586.1|2288346_2289204_+|nucleotidyl-transferase-AbiEii/AbiGii-toxin-family-protein
MIKEWIEEYNPRNEDEILSALREIMQEITLAGLSRTDFFEKAAFYGGTALRIFYGLDRYSEDLGFSLLQPDPNFSIEPYFKAILDEFKSLGLNVSIKEKKKTKESAIDSAFLKAETIWQEIVLEDVIKQTGVRSNRTLKIKIEVDRRPPLNFNTEEKLLLRPFSFYVKCFAGPSLFAGKVHALLFRQWKNRVKGRDWYDLEWYIKKGISLDLSHFLARAKDTNDWQADDISPDQIIEILQKKIDSVSFKNIKEDVIRFIKNDDVLSIWSPEYFHDLVGKIKFKSE
>NZ_CP049616.1|WP_166248587.1|2289493_2290657_+|IS4-family-transposase
MFQDKYVFAQLVSFLNRSKFNRIVAKYEGDKYVKHFSCWNQLLVLMFGQLSNRESLRGLIVALDAHHSKCYHLGMGKNVSKSSLARANQDRDYHIFEEYAYYLVNQAREKRTTNIFNLGGNVYAFDSTTIDLCLSIFWWAKFRKRKGGVKVHTLYDVETQIPTFFHITEASVHDSKAMKEIPYEPDSYYIFDRAYNNFKMLYKIHQIGAYFVIRAKKNLQYKSIKWKRRLPRNVLSDVTIELTGFYPKQYYPGPLRLVKYWDEEQNREFVFLTNACYISALQVAELYKNRWQVELFFKWLKQHLRIKKFWGTSENAVRIQIYAAICTYCLVAIVQHDMKLDRSTYEVLQILSISLTDKTNLRELFSKTKFQNDKERISLNGQSLFNF
>NZ_CP049616.1|WP_166248588.1|2291016_2291478_+|hypothetical-protein
MPLLSIVFGCINATQRTPDNQGLTEKMERPKIFILANNQSWLHTSACGDKMVKTAFGRDAKERGLFTHSFMTSPSLINPEESTYPVRAIPTIEYLCILNIESEKWPTGGPDFVSSDRTNHRDMDTSPTKTPLWQLTNSEKFCAPYEPSNQPMK
>NZ_CP049616.1|WP_166248589.1|2291474_2292431_+|hypothetical-protein
MIQRTAVFVFPSLRGTFKLPYFVIPLLLCSFPTWSQKVKNVPEAFNDIDSSPTTIHIRNILDVPTENGHFQGIQVMEIHGRKKLLVSGSSLHRSYILQADLESQETDTLITLMKDPFRHAGGIQVSNGYLAVGIEDNFNKTRAKASIYNYRNGNLYKSLPDITIDRFGEVKRPTAGATGLLALDEGYLMVVANWDSRIWDFYAVEPENGKYRLLKSFDAPTNWASYQSINLIMDEKHIYAIGFYQEMNISQADLIYVSSVDHFEPQMEKIGTKYFNCTNGVDFIGAAGLEVENGEKLNIWATQKNALEGIAVNIFSKK
>NZ_CP049616.1|WP_166248590.1|2293304_2294315_-|inositol-2-dehydrogenase
MRNLRIAIAGLGRIGKIHLGNLCQMRGVEVVAAMDPLEEGRQYAKEKNVPCVVSAYKEMLDATAPLDAVIICSPTDTHAEYVEMAVRAGINVFCEKPLDLSLQRVVEVLKVVEESNVKLMLGFNRRFDKEFKKVKELVQNGAVGHPHLVKITSRDPGAPPISYIEKSGGLFLDMTIHDFDVARFVVDKEVEEVYAKGTVLIDKAIGEAGDIDTAVVTLTYTDGTMAVIDNSRKASYGYDQRIEVFGSEGMVQSNNNFMDSHKLYNAEGIHAALPLHFFLERYRDAYMVEVQDFINSLGKGVDVPVNGNDGLQSLKIGLAAIKSLKENRPVRLAEIV
>NZ_CP049616.1|WP_166248591.1|2294331_2295237_-|TIM-barrel-protein
MIKIANAPCSWGALEFDLDKKSEEIGYAQVLDEIQETGYLGTELGDWGYMPTDPKRLREEISKRGLELLGAFVPVALTDENQHKKGIESAIQVARLMSMAGYDKAFIVLADDNASVPERTINAGRISSEMGLDTEQWSIFARGAEEIARSVKKAYGIRTVFHHHCAGYVETPDEIDILMQLTDPNILGLCLDMGHYAFGGGDPVKALKKYKDRIWHVHFKDYDPVAAQESRNIGGDYFDALKRGVFCELGKGNVDFKSVVEILDNMGYEDWIVVEQDILPGMGNPKICAKANREYIKTLGL
>NZ_CP049616.1|WP_166248592.1|2295247_2296720_-|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase
MNILKNYIDGQWSTSESKETIPVYNPANQEILAQVPLGNETVKDVNRAVTTAHSAYMEWSKVPVMKRVQVLYKLKSLLEEHREELAVIITNESGKTKAESLGEIQRAIENVEVACGTPMLMGGDIIEDIATGIDEMMIRQPLGVSACITPFNFPGMIVFWFLPYAIATGNAFIVKPSEKVPLTMMKVFELIDTLDLPKGLVSLVHGGKESVDALLEHPLVKGISFVGSTPVARYIYSKGTANGKRVQAQGGAKNPVVVMPDADKEMSARIIADSVYGCAGQRCLAASTIINVGDEKGEFKESLFEMVKKRTTGYGLDNVDMGPVITPESKIRIEGLIQKGIDEGANILLDGRKAKIEGYEKGNFITPTILENVALDKELIRTEIFGPVMSLISMKNIDEALKFVNNGSYGNMACLFTTSGANARKFRNEADAGNIGINIGVAAPMAQFPFSGWKDSFFGDLHGQGKHAIEFFTQTKVVIERWPNIWSRKF
>NZ_CP049616.1|WP_166248593.1|2296756_2298355_-|solute:sodium-symporter-family-transporter
MDSDLFIIFTSFILFTVGVAYFTWYSLRKTNLKSSDGYFLGGRSLTGTVIAGSMLLTNISSEHLIGMNGNSYVNGFIVIAWEVTSSIALVVAAVFFVPKYLKMGLTTIPQFLEKRFDGFTRSLVAVILIFSFVVTLLPIVLYSGAIGIESLFGVSEILGVDKTEGLWITVVIIGAIGSIYAIFGGLKAVAFSDTINGFGLLLGGLLIPVLALVAIGDGNPLDGLYKVYEFAPEKFNVIGAPDSVLPFEVLFTGLIINQLYFWGMNQTIIQRALGAKNLKEAQKGLLLTGLFKILIPLIIVLPGVICFFYFQDAYYDQQDSVYPQLVKKVLPVWLIGFFAAVIMGAVLSTFNSVLNSVATLFSIDIVKKHFKKDISDRKLVFVGKSTSAILAVVAIFTAPMMANAPDGLYQLLQELNGIYFIPIASILLAGFFMKRVSATGAKAALFFGLAFYIFMSWIYTGHGIHFVHLWGIEFVMNVIIMFVVSHYYPRQDSYEMTDVGAVSLVSWKYTKAMSIGLCLVTVLIYVLLGSNS
>NZ_CP049616.1|WP_166248594.1|2298391_2300251_-|3D-(3,5/4)-trihydroxycyclohexane-1,2-dione-acylhydrolase-(decyclizing)
MKTIRLTVAQATIAYLKNQYVERDGKEHKFFAGCFGILGHGNVAGIGQALQQEPDFPFYVARNEQAMVHAAVAYAKVKNRLESFVCTTSIGPGATNMVTGAALATINRIPVLLIPGDIFATRQVAPVLQQLESSISQDVSVNDCFKPVSKYWDRINRPEQLITALPEVMRVLTSPADTGAVTLGIPQDVQAEAFDFPIDMFRKKTWPIGRTLPDRSLLQRAVTLIRASKKPFIVAGGGVIYSGATEILQKLVERTGIPVGETYAGKGSLPYDVPQNLGAIGVTGTPGAIEMAKDADVVIGIGTRYSDFTTVSKSGFQNPNVRFININVTEFDCFKHGALPLVGDAKAVLEELYEHLSDFEVMETYRKRVVELNQSWDSFVEEIYSERNESPAFQGEVIGAVNNFSDARDIVLCAAGSLPGDLHKLWRTRDPKGFHLEYGYSCMGYEIAGGLGAKMARPDNEVYVMVGDGSYLMMSQEIVTSIQERKKLTIVLLNNDGYSSIGSLSASLGSDGFGTYYRYRNEETQQLDGGLLPVDYAANAASMGAHVIKASNVSELHQALKEAKKIDRTTLIYIEVDRKKAVPGFAWWDVAVAEVSQKEEVNASYKTYRENKKQQKYYL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP049616_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049616_3

4419474-4419574

Orphan

Consensus_repeat	Method
GCGGGTGTGGTGGAATTGGTAGACACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP049616_3

>merge|NZ_CP049616|3|4419474-4419574|CRISPRCasFinder
GCGGGTGTGGTGGAATTGGTAGACACGCTAGACTTAGGATTTATCCAAATAAAAAGTGTTAATTTGCACTTTATGCGGGTGTGGTGGAATTGGTAGACACG

>NZ_CP049616|3|3|4419474-4419574|CRISPRCasFinder
GCGGGTGTGGTGGAATTGGTAGACACG	CTAGACTTAGGATTTATCCAAATAAAAAGTGTTAATTTGCACTTTAT
GCGGGTGTGGTGGAATTGGTAGACACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049616.1\|WP_149304579.1\|4422230_4423067_+\|DUF932-domain-containing-protein	unknown	unknown	gnl\|CDD\|377596
NZ_CP049616.1\|WP_166250238.1\|4416911_4417277_-\|BlaI/MecI/CopY-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|367747
NZ_CP049616.1\|WP_166250233.1\|4404435_4406208_+\|DNA-mismatch-repair-protein-MutS	unknown	unknown	gnl\|CDD\|213250
NZ_CP049616.1\|WP_166250239.1\|4417412_4417991_+\|PhnA-protein	unknown	unknown	gnl\|CDD\|377140
NZ_CP049616.1\|WP_166250234.1\|4406204_4408529_-\|BamA/TamA-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|366466
NZ_CP049616.1\|WP_149304583.1\|4425263_4425644_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049616.1\|WP_083157988.1\|4426683_4428126_+\|type-IV-secretory-system-conjugative-DNA-transfer-family-protein	unknown	unknown	gnl\|CDD\|226036
NZ_CP049616.1\|WP_166250231.1\|4403668_4404073_+\|Dabb-family-protein	unknown	unknown	gnl\|CDD\|214884
NZ_CP049616.1\|WP_166250241.1\|4420012_4421800_+\|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl\|CDD\|319251
NZ_CP049616.1\|WP_067030865.1\|4428254_4430282_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049616.1\|WP_166250240.1\|4417987_4419376_-\|dipeptidase	unknown	unknown	gnl\|CDD\|349929
NZ_CP049616.1\|WP_067030876.1\|4423820_4424168_+\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|366099
NZ_CP049616.1\|WP_045802041.1\|4424635_4424833_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049616.1\|WP_166250235.1\|4408540_4413523_-\|translocation/assembly-module-TamB	unknown	unknown	gnl\|CDD\|367909
NZ_CP049616.1\|WP_166250236.1\|4413665_4414766_-\|DUF4407-domain-containing-protein	unknown	unknown	gnl\|CDD\|379583
NZ_CP049616.1\|WP_157518033.1\|4422054_4422213_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049616.1\|WP_166250237.1\|4414872_4416909_-\|M56-family-metallopeptidase	unknown	unknown	gnl\|CDD\|320700
NZ_CP049616.1\|WP_166250242.1\|4425655_4426687_+\|mobilization-protein	unknown	unknown	unknown
NZ_CP049616.1\|WP_067030873.1\|4424242_4424623_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049616.1\|WP_166250232.1\|4404069_4404429_+\|MmcQ/YjbR-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|377256

Protein	Function_ID	Function_description	E-value
NZ_CP049616.1\|WP_149304579.1\|4422230_4423067_+\|DUF932-domain-containing-protein	gnl\|CDD\|377596	pfam06067, DUF932, Domain of unknown function (DUF932). Family of prokaryotic proteins with unknown function. Contains a number of highly conserved polar residues that could suggest an enzymatic activity.	1.38549e-09
NZ_CP049616.1\|WP_166250238.1\|4416911_4417277_-\|BlaI/MecI/CopY-family-transcriptional-regulator	gnl\|CDD\|367747	pfam03965, Penicillinase_R, Penicillinase repressor. The penicillinase repressor negatively regulates expression of the penicillinase gene. The N-terminal region of this protein is involved in operator recognition, while the C-terminal is responsible for dimerization of the protein.	9.08692e-29
NZ_CP049616.1\|WP_166250233.1\|4404435_4406208_+\|DNA-mismatch-repair-protein-MutS	gnl\|CDD\|213250	cd03283, ABC_MutS-like, ATP-binding cassette domain of MutS-like homolog. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange.	5.97872e-73
NZ_CP049616.1\|WP_166250239.1\|4417412_4417991_+\|PhnA-protein	gnl\|CDD\|377140	pfam03831, PhnA, PhnA domain.	7.95812e-31
NZ_CP049616.1\|WP_166250234.1\|4406204_4408529_-\|BamA/TamA-family-outer-membrane-protein	gnl\|CDD\|366466	pfam01103, Bac_surface_Ag, Surface antigen. This entry includes the following surface antigens; D15 antigen from H.influenzae, OMA87 from P.multocida, OMP85 from N.meningitidis and N.gonorrhoeae. The family also includes a number of eukaryotic proteins that are members of the UPF0140 family. There also appears to be a relationship to pfam03865 (personal obs: C Yeats). In eukaryotes, it appears that these proteins are not surface antigens; S. cerevisiae YNL026W (SAM50) is an essential component of the Sorting and Assembly Machinery (SAM) of the mitochondrial outer membrane. The protein was localized to the mitochondria.	7.79063e-22
NZ_CP049616.1\|WP_083157988.1\|4426683_4428126_+\|type-IV-secretory-system-conjugative-DNA-transfer-family-protein	gnl\|CDD\|226036	COG3505, VirD4, Type IV secretory pathway, VirD4 components [Intracellular trafficking and secretion].	4.98702e-18
NZ_CP049616.1\|WP_166250231.1\|4403668_4404073_+\|Dabb-family-protein	gnl\|CDD\|214884	smart00886, Dabb, Stress responsive A/B Barrel Domain. The function of this domain is unknown, but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar). It is also found at the C-terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus.It is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The structure of one has been solved and the domain forms an alpha-beta barrel dimer. Although there is a clear duplication within the domain it is not obviously detectable in the sequence.	6.17385e-15
NZ_CP049616.1\|WP_166250241.1\|4420012_4421800_+\|ParB/RepB/Spo0J-family-partition-protein	gnl\|CDD\|319251	cd16393, SPO0J_N, Thermus thermophilus stage 0 sporulation protein J-like N-terminal domain, ParB family member. Spo0J (stage 0 sporulation protein J) is a ParB family member, a critical component of the ParABS-type bacterial chromosome segregation system. The Spo0J N-terminal region acts in protein-protein interaction and is adjacent to the DNA-binding domain that binds to parS sites. Two Spo0J bind per parS site, and Spo0J interacts with neighbors via the N-terminal domain to form oligomers via an Arginine-rich patch (RRXR). This superfamily represents the N-terminal domain of ParB, a DNA-binding component of the prokaryotic parABS partitioning system. parABS contributes to the efficient segregation of chromosomes and low-copy number plasmids to daughter cells during prokaryotic cell division. The process includes the parA (Walker box) ATPase, the ParB DNA-binding protein and a parS cis-acting DNA sites. Binding of ParB to centromere-like parS sites is followed by non-specific binding to DNA ("spreading", which has been implicated in gene silencing in plasmid P1) and oligomerization of additional ParB molecules near the parS sites. It has been proposed that ParB-ParB cross-linking compacts the DNA, binds to parA via the N-terminal region, and leads to parA separating the ParB-parS complexes and the recruitment of the SMC (structural maintenance of chromosomes) complexes. The ParB N-terminal domain of Bacillus subtilis and other species contains a Arginine-rich ParB Box II with residues essential for bridging of the ParB-parS complexes. The arginine-rich ParB Box II consensus (I[VIL]AGERR[FYW]RA[AS] identified in several species is partially conserved with this family and related families. Mutations within the basic columns particularly debilitate spreading from the parS sites and impair SMC recruitment. The C-terminal domain contains a HTH DNA-binding motif and is the primary homo-dimerization domain, and binds to parS DNA sites. Additional homo-dimerization contacts are found along the N-terminal domain, but dimerization of the N-terminus may only occur after concentration at ParB-parS foci.	2.21163e-41
NZ_CP049616.1\|WP_166250240.1\|4417987_4419376_-\|dipeptidase	gnl\|CDD\|349929	cd05680, M20_dipept_like, uncharacterized M20 dipeptidase. Peptidase M20 family, unknown dipeptidase-like subfamily (inferred by homology to be dipeptidases). M20 dipeptidases include a large variety of bacterial enzymes including cytosolic nonspecific dipeptidase (CNDP), Xaa-methyl-His dipeptidase (anserinase),and canosinase. These dipeptidases have been shown to act on a wide range of dipeptides, but not larger peptides. For example, anserinase mainly catalyzes the hydrolysis of N-alpha-acetylhistidine while carnosinase degrades beta-alanyl-L-histidine.	0
NZ_CP049616.1\|WP_067030876.1\|4423820_4424168_+\|single-stranded-DNA-binding-protein	gnl\|CDD\|366099	pfam00436, SSB, Single-strand binding protein family. This family includes single stranded binding proteins and also the primosomal replication protein N (PriB). PriB forms a complex with PriA, PriC and ssDNA.	4.88537e-40
NZ_CP049616.1\|WP_166250235.1\|4408540_4413523_-\|translocation/assembly-module-TamB	gnl\|CDD\|367909	pfam04357, TamB, TamB, inner membrane protein subunit of TAM complex. TamB is an integral inner membrane protein that forms a complex - the translocation and assembly module or TAM - with the outer membrane protein, TamA. TAM is responsible for the efficient secretion of the adhesin protein Ag43 in E.coli K-12.	1.95939e-50
NZ_CP049616.1\|WP_166250236.1\|4413665_4414766_-\|DUF4407-domain-containing-protein	gnl\|CDD\|379583	pfam14362, DUF4407, Domain of unknown function (DUF4407). This family of proteins is found in bacteria. Proteins in this family are typically between 366 and 597 amino acids in length. There is a single completely conserved residue R that may be functionally important.	3.72573e-119
NZ_CP049616.1\|WP_166250237.1\|4414872_4416909_-\|M56-family-metallopeptidase	gnl\|CDD\|320700	cd07341, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase. This family contains peptidase M56, which includes zinc metalloprotease domain in MecR1 as well as BlaR1. MecR1 is a transmembrane beta-lactam sensor/signal transducer protein that regulates the expression of an altered penicillin-binding protein PBP2a, which resists inactivation by beta-lactam antibiotics, in methicillin-resistant Staphylococcus aureus (MRSA). BlaR1 regulates the inducible expression of a class A beta-lactamase that hydrolytically destroys certain ?-lactam antibiotics in MRSA. Both, MecR1 and BlaR1, are transmembrane proteins that consist of four transmembrane helices, a cytoplasmic zinc protease domain, and the soluble C-terminal extracellular sensor domain, and are highly similar in sequence and function. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription. All members contain the zinc metalloprotease motif (HEXXH). Homologs of this peptidase domain are also found in a number of other bacterial genome sequences, most of which are as yet uncharacterized.	5.98696e-21
NZ_CP049616.1\|WP_166250232.1\|4404069_4404429_+\|MmcQ/YjbR-family-DNA-binding-protein	gnl\|CDD\|377256	pfam04237, YjbR, YjbR. YjbR has a CyaY-like fold.	2.83839e-42

>NZ_CP049616.1|WP_166250240.1|4417987_4419376_-|dipeptidase
MKDINNYINSNKDRFINELIELLKIPSISADKAYAKDVLEAAKAVKKSLDDAGCENTEICETKGCPVVYGDKIIDPNLPTVLVYGHYDVQPPDPMNLWTSPPFEPVIKKTELHPDGAIFARGACDDKGQFFMHVKAVEYMIQNDELPCNVKFMIEGEEEVGSDSLEDFLKENSEKLKNDIILISDTGMISNDTPSITTGLRGLSYVEVEVTGANRDLHSGIYGGAAPNPINVLAKMIAQLHDENNHITIPGFYDKVEVISDEERAEMAKAPFDLEAYKKSLDIADVHGEKGYSTGERFGIRPTLDVNGIWGGYTGEGAKTVIASKAYAKISMRLVPNQDWHEITDLFTKHFESLAPKSVKVKVSPHHGGQAYVTPIDSDGYQAASKAMETTFGKTPVPQRTGGSIPIVALFENVFDSKTILLGFGLDSDAIHSPNEHFGVWNFLKGIETIPYFYKYYTEMKA
>NZ_CP049616.1|WP_166250239.1|4417412_4417991_+|PhnA-protein
MGLLEDLLERSGGVCELSGAADDLVVYEVPPVSTGGLDGSILISATCKNQIENPDAMDANHWRCLNDSMWSEHDAVKVVVWRMLNRLKSEGWPQDLLGMMYLDEETLEWAKATGEGKEEGEKIVHRDVNGNILENGDNVVLIKDLKVKGSSMVAKQGTAVRRISLDHENAEYIEGRVDGQQIVIVTKYVKKT
>NZ_CP049616.1|WP_166250238.1|4416911_4417277_-|BlaI/MecI/CopY-family-transcriptional-regulator
MQLSKSEEELMNIVWKLKKAFMKDLLEAYPEPKPATTTVATLLKRMADKGFVAYNSIGRSREYYPLVKKKDYFSKHVNGLIKNFFNDSATQFASFFAQETNLSKEQLEELKKLIDIEIKKK
>NZ_CP049616.1|WP_166250237.1|4414872_4416909_-|M56-family-metallopeptidase
MLIFLLKSTACLAIFLAFYKLMLEKESIHHFKRYFLLVALIASFIIPNLVLTEYVDVAEPTLGTYTAIENMDSAALTEQPLPQPSSFDWELFLWCVYTLGVIGFGFRFMANLFQIRKRIKKNPKFKENFMTKVLLVQALPPHTFLNYIFLNQKQYRENSIPQEVLLHEETHAKQRHSLDILFIELAQVVFWFNPLIYLFKSSIKLNHEFLADKAVIRKEQNHSHYQNTLLSYLSNDIERHQSVGIANAINYSSIKKRFTVMKTNTSKTSFVFRSFLLLPLTALLLFGFSEHRTIERQNPRKNIITIDLVDTETVQIDNNIVHFNEVAQIINQNYLSAFDADKTKVKVTAIQSVHLNTINNLSEEIRTTGIDIIEVFADEVIMEESQFKDNVAITPSTTRLNAKRMTIMGAEDDLQPTQKTVSQKDSQKTINPIEIHINKKGKLLFQSKLVALEDLKDELSKINDHLSFGQREKTIRSIINVEATTPKDIIQKVDMIFEEYGSATINIVGAKIQQQGSATREEMKEYNTLAKKYNAMDRNHMTIKKREVMRLKEIYGKMSEKQRADAEPFPDFPPPPPAPPAPGATESPMPPSPVKDLKETKPVAPSNPPAPPAPPKPIEKIKKMVAKGASFTLNGKEITGKKAIEVVQENKFIYILSMESEGANPVVKLATDPIGIEN
>NZ_CP049616.1|WP_166250236.1|4413665_4414766_-|DUF4407-domain-containing-protein
MLQRFFIFCSGADTQILETCSNGERNKYAGIGATVFFTAVMAFIASGYALYTVFDNVYTSIFFGLIWGLLIFNLDRYIVSTIKKRDNFKGELLQAAPRIVLALIIAVVISKPLEMKIFEKEINQVLLEEKNAMTLNNKEQLALQYTPKIESLNQDIANLKSEVATKEAETNALYDTYISEAEGRAGTGLLGKGPVYKEKRDKHDAALAELNTLKETNAVKIAAIESEIAALETDYGTAVANSQPIIDGFDGLMARINALGKLPWLPSFFIFLLFLAIETAPIIAKLMSPKGEYDFKFEEQESVVATWVTQKVEQRKLLMATDGELNQQIYADIKNEEELYRYKKQKAEELLRLQADSFHKLQVKNL
>NZ_CP049616.1|WP_166250235.1|4408540_4413523_-|translocation/assembly-module-TamB
MKNKKWNRKRILKIIGKSILVLFILFVVLVLVIRTPWAQNRIVSEITDYVSGKTNTKVEVQKVFITFSGNIMAQGIYLEDKQGDTLLYSQELQLDLPIYPLLVKNELSIDDVEATRLVANISRNTDPESFNFAFLIDAFASPDTTSTSEPMSISLGDFQLNDWKVRYHDAYLGTKINVSIGELDIEVTEFDLEEMIFGVDDFVLKNSQISYEQTHSTPTSDDTSTSTPPKISIDGIQLEEVTMVYNSEPDGIRTKALLSEFDLTELAVDVSKNSYKTDEIALKNSNIKLHLEQTTDTIKSPEQTTSFQWPQLELQSNQLSLESNTINFSRNAAKQTDTIFNPDAFTISQLTFKSSDFRYRPANVKLDLEAFSFRESSGIALQQLDFGASISDTGAKISDLNLRLNNSSLNANVDIRYASLDAAFNNPENSSLQLVVSQLNLEPSDAQLFSPELQKNSYLDSLATNPITGYLRANGSLKKVDDLESELQWGPSTTLNLKGTFSNITQREAFTYNMGNLDIKSTKENLQKFISTDSLSFKVPETIRLAGSLQGDLESMQTKAILTIPEGRVNLDALADFGNQKRFEGMISTDSLQLGSLLKNNQLGAVSVQLKGSGSGNELADIDARLEGTVGLLQFKEYNYKDININGELASGTGNISLSLKDENLNLTAKTLVDFTSNSNNISFTSNIIGADLRKLGFTKNDIKIAGDLEGSYQGNSNKYAVEASIKNGIAVADNKQYQITPILINARVEDSITDATVKSGFLNGGLHSNASLNRINTALKKQVENYFSTDSTLSKSLDDVEAQLDLALVPTPIISKVFFDGFEDVDSVNIDAKFNARTKQIAGKVSVPKFTYAGSTVDSLEVNLQGDSTNLNFYAGLKNFKLDPVHLKKTYIEGNLQNKELVLDFNSVNDTTQIMHVSSELVFKKDTLSLHISPENLLLNKKPWEIPDDNKIVMADSYTEFTNLKLSRNGQKLEVSTAVPEMDSVHIGIIFENFQLQTFLSLLNPEQALAKGTVQGNFVVLNPYSASGLVSKMDITDFQFMQTPLGSLSLNASSKSLSDYDFDLVVKGEGADLSLTGNYVAQQQGADLNMDLDIQKFETRIVQGFLKEQISDASGYISGSMQVGGTTSNPTYSGRLSFNEVGVTLSAFKTKLGVSGQTLSLNEEEIVFDDFSINDTGSGTLVLDGAILTEELLNPGFDLIIRADKFTVLDSKKGDNELVYGKAIVDTDLEVTGNLELPVINGKINIGNATDLTYLVPKSQYEIQEREGVVIFVNRKNPDAILTRNTGETGNSVFAGMDINTTLEISDKAVFKVVLDERTGDMLQASGNATLNLSLNRNDNIGLSGRLELNSGFYRTSLYNLVNRKFTINDGSTVVWSGDPYNATLDVTATYEVETSPTPLMSSISYGQDTGISGQYQRPATFLVYLMVGGEIMSPEISFSLDMPESAQGSYGGGVYGRIQQLNEQESELNKQVFSLLALNRFFPTSGSDGSSGGAVALARDNVNKALSGELNSLSNKIMGNTGLELDFDLDSFQENQGNGYQNRTQLNINARKKLFDDRFIVTAGSAVDVEGRASSSDTSTPLIGNVTLEYLLSEEGTYRLKGFRRQEYQNIIDGQLIVTGLAFIFNREFNKFSQLFSPIKAKAKEEEPLAKDADKKKQ
>NZ_CP049616.1|WP_166250234.1|4406204_4408529_-|BamA/TamA-family-outer-membrane-protein
MKNFGKTYLIYTGLAFFLLHSCSIKKFIPEGERLYTGAELALDTIGEVKGLKDVKSELTDMIEPNPNTTFIGMKPRLYFHYKAQRKKPGFLYKFLNKSFGEEPVYFSDVDPEQVEELLLNRLNNNGFFYSRTGSETILEEKFASVNYSATVQEPYTLENYEVDMDTLPIYKALEELIKETPLSKNNRFDLDLLKAERERLDHGLKQQGYYNSHANLLIFEADTNQYKNRKFDLFLRLKKEVPKKSAIPYTIDSITVYPNYSIEGDTLPLSKQNRTTVNGTDFIQNEYYFKPKLLETYLLLKEGDLYNANISKTTSSRLSSLGSYKYVNIQYRELDTTNTDGDGGSLAADIYLAPLTKRSVRAEIQAVTKSNGFTGPGLLLSYNNRNLFKGGETLSLSTHFSYESQLSSGNNSSLSSISWGLKGDLIFPRSIPFSPKNFRYSVPKTKISAGVDFLNRSQLFTLSSINGSFGYTWKENRYVYHQLDPININYTRLSNVTDEFQEILDDNPFLRRSFDQRFIAGLLYTFTYDEISDLGKEYPIFFSTNIDLAGNLLSLMDGGSGTILGSEYAQYAKMDADFRLYLRWDKEQTLVSRIYAGWGIPYGNSETLPFVKQFFSGGPYSVRAFNIRSLGPGNFNVDPNDSTTDFFDRSGNLKLEANIEYRFPLFSFLKGAFFVDAGNVWLTGNYDDLEADQQNSNFSNSLFTDGRFESDWLQEVGAGFGFGLRVDIQNFVIRFDLASPFRVPYQPKNDRWNVPFFGNNGNKATLNFAIGYPF
>NZ_CP049616.1|WP_166250233.1|4404435_4406208_+|DNA-mismatch-repair-protein-MutS
MQDLQGFFSSQQEKHQQELQQVKKKLGLLATLRLSVFVALALGIYFLWGTTAIFVLLPLGIVLFLFLVTRFSNVKRHKEYLQRLIVINGTELDILSRKFHHLPDGKEFLKPDHPYAQDLDVFGRGSFYQYTNRTTLVQGSEVFANLLLDGYPKDIAKKQAAIQELAQLPEWRQHFSALAGETEPKISPDVVSYWMKNHKSFIPKWGGMVPVIFASLSLILIAMAFWGWVPESLILFWYFLGVGAVGRYAKKILAFTAKVSEAQDTIQQHQRLISELEEHTFNSELLQELQKKLVVEGERTSKILKRFSQSMTMLEQQFNLVISMFAQGLGLYSVYYAFQIESWIGKHGQDVEGWFAAIAQFDAYITLGTYAFNHPEHTYPNLVGGNIVMQGKDIGHPLVDSRKNILNDFEIEKGRFCIVTGANMAGKSTFLRAVGLQIVMANMGLPIMGKEVLYNPVRLLTSMRSSDSLADETSYFYAELKRLKYIVEELEKDDCFVILDEILKGTNSVDKAEGSKKFVERLVRNGSTGMVATHDLSLCTLADELPEVENRYFDAQILDGELYFDYKFKEGVCQNMNASFLLRKMDIIKD
>NZ_CP049616.1|WP_166250232.1|4404069_4404429_+|MmcQ/YjbR-family-DNA-binding-protein
MNVEELREICISKKGATEEFPFDESTLVFKVMGKMFVLVPLERLPPQCNLKCDPERAETLREEYDGTITPGYHMSKKHWNTLLLEQLPPQLIKDLVDHSYELVVSGLTKKLQQELQNLG
>NZ_CP049616.1|WP_166250231.1|4403668_4404073_+|Dabb-family-protein
MKTKIITLLLVGVLASSCVEIKNDMNNNFDHTFAHVVYFWFKNPDSQEARDTFEASLTKFLNNSEYAKTKFIGKPPKAIRDVVDDSFTYSLILSFESAEDQAAYQDEAPHKVFIEECEDLWEKVIVYDSQGIQQ
>NZ_CP049616.1|WP_166250241.1|4420012_4421800_+|ParB/RepB/Spo0J-family-partition-protein
MTTKASTTRKRRSTTTTAKKEVNGKKVPVLQIENIPIGKIKPDPKQPRKTFDEKQLQQLSDSIKEFGVLQPITVRKSGKDFIIVMGERRFRASKIARKNTIPSIVRTYENDEVLEVQIIENLQRKDVEPTEEAEAIAYLSDKYQPSEIAKRLGRTDNFIRQRLKLAGLIDGFKHFVRNGEMTISLGVGVALFEPEEQQMMLETMGEDFNAHQINRMINNRTYDLEKAPFDVADKTLVVKAGSCVECPFNAANQGNLFGEGKMVCTKSPCFETKKTKSFLNLIEKSKKKNLLLIPEIRQYWADEEKNQLVISQLENNGLKVYLLDDVEIIENPIEPTMDAIKIEYQHYDYSEDELKAEFKEAIQQYKEELKTYCSAEKNGFVNGIVFHPETYQNKNVFIKVIEKLKNDSSEYSAPLANRKMADCTPEEQIIKINEREIRKRQIENNKQFEEVVQMIRETDYIDTKKTLSVDEMVAFSISLFENNVDYMSRQKCFSGFFAKTSKMSRVEIVEHFKKNFKKEIFHKLIRYMLTKQVHFSESNHNNNLTNISFYYAMQGYYKSKIADIEKSYAEKRNKREARLKERIAVLEKKIQELKD
>NZ_CP049616.1|WP_157518033.1|4422054_4422213_+|hypothetical-protein
MEQASKAKISVEEAEVHYQSSKENYIIEGAESHLAYYREKHPEYYALLSQIV
>NZ_CP049616.1|WP_149304579.1|4422230_4423067_+|DUF932-domain-containing-protein
MYLQNLQQDEIFVSNEMKSLKNLTQMESRRGLENAIISNGKIVNVVSNSYGHIPNQLFFKKAEEMLTDAGLNYHKRTINKNDRSFITDFIIDDKSQFTVKNDKDLILPMLRFKNSYDGSEKTSGHFGFYRKVCSNGLHVSQAEIEFSIKHSRNNTDLIMPRLNNLFDKFLDNEFYTITKKFDRMKEFKIIDTKEFVKAILDRTKLFRYECSDKNSDPSKKSREVLEILNYEALLLDEEPNLWLGYNAFNSVLHNVLKKSFGQQELLDKKLFDEVYALA
>NZ_CP049616.1|WP_067030876.1|4423820_4424168_+|single-stranded-DNA-binding-protein
MSTLRNHVQLIGNVGQEPTITNLESGSKVARFSLATNEYYKNKKGEKEQSTEWHTVVAWGKTAEIVEKYVVKGKEVGVSGKLKSRSYEDKDGIKRYVTEIEANEILLLGTKNGNE
>NZ_CP049616.1|WP_067030873.1|4424242_4424623_+|hypothetical-protein
MKAQVNEIKERLQYFTGTEMFYQIPLLRTRFTDGLKYLSEVAECFWLITDASVIAKSLMNRSKFITIDFKRMSEEKQDYTGYEAEIIYSDGNDNILETHRYNATDFPLDELRMFFVNDTLMLPSEY
>NZ_CP049616.1|WP_045802041.1|4424635_4424833_+|hypothetical-protein
MIYLNFTDLSEEAQERLLTNSKEDVKKKYGKDLMDYATKHHTNLDQMLDEEALRNLYSYTYVFNI
>NZ_CP049616.1|WP_149304583.1|4425263_4425644_+|hypothetical-protein
MDTFIGIRFKKETAKRFQEFSRTHFKTHTEAMEAILDFFFYNEISPKENLGPTGRTIEAKLLKRINAVIAIMRDVEKTQTKPTVAMLQSLFEMEETKKKPLILEKKFAEEKNEVRFREKRNNSNQL
>NZ_CP049616.1|WP_166250242.1|4425655_4426687_+|mobilization-protein
MYINITPQKLGTNYSQSSADFVDYLEKENEGLEKEEMEHFFNQYGDEISAKEVVKEIDGNTAKLKKKEPKFYSITVSPSKYELRKLENNSEDLKRYTRELMKDYAASFNREINGRKVTVDDIKYFAKIEHQRTFKGTDFQVRENQPFATKILELKQEVRRIQQGQATGNIDRLKLTIGKLEKEAPHQLNGKRIVQGMKKHGNQSHIHIIVSRKDASNSFSLSPGSKHKASEVEMHGKKVKRGFNRDQFFERAEKTFDKTFGYQRNYAETYKAKKDFMKNPKLYFAALMKLPANEKALAFKIMGKSGIPLIPNIPTSKAQLALRVFKRLRKGAEIAVKSSSIGI
>NZ_CP049616.1|WP_083157988.1|4426683_4428126_+|type-IV-secretory-system-conjugative-DNA-transfer-family-protein
MSWSLIEIVIYIVVPILSVAILSYALYDSEPRNKTEKKYQVKFPTKSGSFKIDNIKRGASVIGSAGSGKTESVVYGFLKHFRENSFCGIIHDYKNFELTEMAYPLFADSNVPMKVISFDRIIHRVNPIAPKYLENEESVNEVSRVLIENLLEQRESGTTGTTKFFNDAAEGLIGGLIWKLKADYPQFCTLPHLIAIYQMLDTDSLVQFLETNTTSRAMADAFISGKDSERQTAGVKSTLANALKRISTKRIFMALSADEVPLNINDEENPAVISVVNNPKFETSYSPVIATIIHTITKQMSVRNSKPSFLLMEEAPTIRLLNMHRIPATLRSYDIATIYVMQDKIQNDMMYGDKASKAILSNLSYQFFGKVNDPDTAKYYERFFEIIKNPTKSVSKAANIFKTDTRITKGEREVSKRRADIFFRLKQGEFVTFADGKDKKVRFSLPKIRRQLPQDTKRYSDSDLRANFERVYDDARSIFG
>NZ_CP049616.1|WP_067030865.1|4428254_4430282_+|hypothetical-protein
MIVPAENIVETVDLTADDVLLPMLECVVNSIISLQQSSLPANEKEIQIKIIRGALPSQTNLLDSVKTIDSFVITDNGIGFTDKNYRSFETPFSQANKEFGCKGIGRFTVLAAFESLKVESNYLENQVWKYREFEFNTKDEVNLITSEKSEEDVFKTKVRLDNCFNEVIRQKSALKIEDIAESVMQHCLIYYLNDSLPKIMIYDEESSRAESINDLYAKVSKEKERNFEVKKQQFKIYITKTPKEGNRKNNYVHYCANSRVVGNPKNIKNFNSLFNYPISRNGSLYFLDVYVVSEYLNRKSFSTRNGFNIPKEKENLLFANSSPLSFQEIEENLTKVLEDEYNEFVKKSRERSQEEIKSYIKEKAPRYRSFLKKPEVLNSIPPNLSEDKLEEHLYKISYTARKKVENHIDKFINEKQVNEETINQIKDDIKEKTAYDVDSLADYMTRRRAIIELFEKFLDADENGNYKLEEDVHNLIFPMGLTSNDVVYENHNLWLLDERFLNYKFIASDKSITSYSQKKSRKEADLVMIDNPQMFENPIGFGDKNSGEINSMVIFEFKRPGEVAHQKRKGNYRWEFSDLIEPYFDEFLYQQDKKNYKGNQVIVTKNTPKFGFIIVDVLPTNLKQFNEDKGWEKTPFGTYFKIIPKLNLNLEVMTFRKLLEVSRERHNAFFNKLFN

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

748296 : 805699

Bacillus_phage(20.0%)

protease,tRNA,transposase,integrase

attL 786360:786377|attR 808349:808366

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_166247448.1\|748296_748878_-\|tRNA	tRNA-(ms[2]io[6]A)-hydroxylase	NA	NA	NA	NA
WP_166247449.1\|748931_750719_-	DNA polymerase III subunit gamma/tau	A0A1U9WR94	Streptococcus_virus	3.5e-46	44.8
WP_166247450.1\|751139_751679_-	methyltransferase	NA	NA	NA	NA
WP_166250407.1\|751680_752493_-	DUF3822 family protein	NA	NA	NA	NA
WP_166247451.1\|752495_753233_-	hypothetical protein	NA	NA	NA	NA
WP_166247452.1\|753340_754774_+	AAA family ATPase	A0A172JHS6	Bacillus_phage	2.2e-19	28.2
WP_166250408.1\|754804_755371_+	DUF4126 domain-containing protein	NA	NA	NA	NA
WP_166247453.1\|755392_756121_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA
WP_166247454.1\|756111_756816_+	HAD hydrolase-like protein	NA	NA	NA	NA
WP_166247455.1\|756815_757943_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_166247456.1\|757974_758520_+	acyltransferase	NA	NA	NA	NA
WP_166247457.1\|758596_760552_+	hypothetical protein	NA	NA	NA	NA
WP_166247458.1\|760887_761598_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_166247459.1\|761663_761951_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA
WP_166247460.1\|761998_762817_-	sugar nucleotide-binding protein	NA	NA	NA	NA
WP_166247461.1\|762824_763913_-	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA
WP_166247462.1\|764015_765311_-	threonine synthase	NA	NA	NA	NA
WP_166247463.1\|765315_766239_-	homoserine kinase	NA	NA	NA	NA
WP_166247464.1\|766242_768687_-	bifunctional aspartate kinase/homoserine dehydrogenase I	NA	NA	NA	NA
WP_166247465.1\|768945_770481_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA
WP_166247466.1\|770477_770897_-	STAS/SEC14 domain-containing protein	NA	NA	NA	NA
WP_166247467.1\|771053_771317_-	hypothetical protein	NA	NA	NA	NA
WP_119648324.1\|771395_772427_-\|integrase	site-specific integrase	A0A0E3M2X0	Bacillus_phage	1.4e-07	23.5
WP_119648325.1\|772410_773451_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_119648326.1\|773419_774652_-\|integrase	tyrosine-type recombinase/integrase	Q20DH2	Lactobacillus_phage	2.9e-07	25.9
WP_166247468.1\|774786_775032_-	BLUF domain-containing protein	NA	NA	NA	NA
WP_166247469.1\|775158_777717_-\|protease	ATP-dependent Clp protease ATP-binding subunit	H6X3M6	Enterobacteria_phage	2.9e-126	34.3
WP_166247470.1\|777978_780507_+	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	6.1e-113	34.6
WP_166247471.1\|780558_781821_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_166247472.1\|781875_782628_-	C40 family peptidase	NA	NA	NA	NA
WP_166247473.1\|782648_783824_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA
WP_166247474.1\|783939_785976_+	HDIG domain-containing protein	NA	NA	NA	NA
786360:786377	attL	NA	NA	NA	NA
WP_166247475.1\|786481_787969_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_166247476.1\|787971_788241_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_166247477.1\|788243_788774_-	hypothetical protein	NA	NA	NA	NA
WP_166247478.1\|789025_790747_+	SAM-dependent DNA methyltransferase	A0A220A2U4	Liberibacter_phage	7.6e-30	29.5
WP_166247479.1\|790746_791676_+	hypothetical protein	NA	NA	NA	NA
WP_166247480.1\|791675_793016_+	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	5.3e-31	39.6
WP_166247481.1\|793018_796018_+	type I restriction endonuclease subunit R	A0A220A398	Liberibacter_phage	4.0e-26	23.4
WP_166247482.1\|796063_796759_+	hypothetical protein	NA	NA	NA	NA
WP_166247483.1\|796772_797654_-	toxin-antitoxin system YwqK family antitoxin	NA	NA	NA	NA
WP_166247484.1\|798061_799477_+	DUF285 domain-containing protein	NA	NA	NA	NA
WP_166247485.1\|799645_800956_-	hypothetical protein	NA	NA	NA	NA
WP_166247486.1\|801176_801782_+	recombinase family protein	NA	NA	NA	NA
WP_166247487.1\|802264_803539_-	hypothetical protein	NA	NA	NA	NA
WP_166247488.1\|803710_804388_+	hypothetical protein	NA	NA	NA	NA
WP_166247002.1\|804433_805699_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	4.7e-61	58.6
808349:808366	attR	NA	NA	NA	NA

DBSCAN-SWA_2

3713760 : 3721763

Cellulophaga_phage(83.33%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_166249647.1\|3713760_3714357_-	N-acetylmuramoyl-L-alanine amidase	A0A0S2MWH1	Cellulophaga_phage	6.4e-29	40.4
WP_166249648.1\|3714404_3714629_-	hypothetical protein	NA	NA	NA	NA
WP_166249649.1\|3714656_3715346_-	BACON domain-containing protein	S0A4N6	Cellulophaga_phage	5.2e-14	69.5
WP_166249650.1\|3715345_3716746_-\|tail	tail fiber domain-containing protein	R9ZZI7	Cellulophaga_phage	5.2e-13	38.7
WP_166249651.1\|3716767_3718273_-\|tail	tail fiber domain-containing protein	R9ZZI7	Cellulophaga_phage	1.4e-16	26.0
WP_166249652.1\|3718283_3719573_-\|tail	tail fiber domain-containing protein	R9ZZI7	Cellulophaga_phage	1.8e-12	41.9
WP_166249653.1\|3719970_3720156_-	hypothetical protein	NA	NA	NA	NA
WP_166249654.1\|3720173_3721763_-	hypothetical protein	A0A140B3F5	Vibrio_phage	7.8e-05	29.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP049616

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection