CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NZ_CP049702	Bradyrhizobium sp. 4(2017) strain 323S2 plasmid pB323S2c, complete sequence	1 crisprs	WYL,RT	0	1	1
NZ_CP049699	Bradyrhizobium sp. 4(2017) strain 323S2 chromosome, complete genome	4 crisprs	csa3,RT,cas3,WYL,DEDDh	2	3	29
NZ_CP049700	Bradyrhizobium sp. 4(2017) strain 323S2 plasmid pB323S2a, complete sequence	0 crisprs	RT,PrimPol	0	0	3
NZ_CP049701	Bradyrhizobium sp. 4(2017) strain 323S2 plasmid pB323S2b, complete sequence	0 crisprs	RT	0	0	4

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP049702_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049702_1

102773-102923

Orphan

Consensus_repeat	Method
GCGGCATCGAGACGCTCCCTTTCCATTTTTAGGAATGAGTTTTCCT	CRISPRCasFinder

1 spacers

WYL

The CRISPR arrays of NZ_CP049702_1

>merge|NZ_CP049702|1|102773-102923|CRISPRCasFinder
GCGGCATCGAGACGCTCCCTTTCCATTTTTAGGAATGAGTTTTCCTGCGTGCCGTCGAAGTAATCGCGGTCGGTTCTGCTCACTGGTAGGCCCCCAACCGTTGGAGCGGCATCGAGACGCTCCCTTTCTATTTTTAGGAATGAGTTTTCCT

>NZ_CP049702|1|1|102773-102923|CRISPRCasFinder
GCGGCATCGAGACGCTCCCTTTCCATTTTTAGGAATGAGTTTTCCT	GCGTGCCGTCGAAGTAATCGCGGTCGGTTCTGCTCACTGGTAGGCCCCCAACCGTTGGA
GCGGCATCGAGACGCTCCCTTTCTATTTTTAGGAATGAGTTTTCCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049702.1\|WP_166354608.1\|98004_98208_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049702.1\|WP_166354629.1\|113577_114069_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049702.1\|WP_166354631.1\|114083_118307_+\|ATPase	unknown	unknown	gnl\|CDD\|372641
NZ_CP049702.1\|WP_166354596.1\|88530_89481_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049702.1\|WP_166354616.1\|103559_104771_-\|patatin	unknown	unknown	gnl\|CDD\|366777
NZ_CP049702.1\|WP_166354618.1\|104767_107023_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379614
NZ_CP049702.1\|WP_166354627.1\|113152_113581_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049702.1\|WP_166354606.1\|96933_97449_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377443
NZ_CP049702.1\|WP_166354623.1\|109206_112704_+\|DUF3883-domain-containing-protein	unknown	unknown	gnl\|CDD\|350769
NZ_CP049702.1\|WP_166354612.1\|99646_100228_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049702.1\|WP_166354603.1\|93526_95635_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|367112
NZ_CP049702.1\|WP_166354599.1\|89803_91666_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273716
NZ_CP049702.1\|WP_166354622.1\|108317_109181_+\|transcriptional-regulator	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|225253
NZ_CP049702.1\|WP_166354625.1\|112700_113165_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|119346
NZ_CP049702.1\|WP_166354610.1\|98759_99593_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049702.1\|WP_166354601.1\|91820_92846_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049702.1\|WP_166354620.1\|107024_108158_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|293817
NZ_CP049702.1\|WP_166354597.1\|89524_89716_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|133381
NZ_CP049702.1\|WP_166354614.1\|103327_103513_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049702.1\|WP_166354604.1\|95887_96934_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372947

Protein	Function_ID	Function_description	E-value
NZ_CP049702.1\|WP_166354631.1\|114083_118307_+\|ATPase	gnl\|CDD\|372641	pfam13589, HATPase_c_3, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. This family represents, additionally, the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.	2.33812e-05
NZ_CP049702.1\|WP_166354616.1\|103559_104771_-\|patatin	gnl\|CDD\|366777	pfam01734, Patatin, Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein but it also has the enzymatic activity of lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.	3.05448e-10
NZ_CP049702.1\|WP_166354618.1\|104767_107023_-\|hypothetical-protein	gnl\|CDD\|379614	pfam14457, Prok-E2_A, Prokaryotic E2 family A. A member of the E2/UBC superfamily of proteins found in several bacteria. The active site residues are very similar to the eukaryotic E2 proteins. Members of this family are usually fused to E1 and JAB domains C-terminal to the E2 domain. The protein is usually in the gene neighborhood of a gene encoding a distinct metallobetalactamase family protein.	6.94257e-20
NZ_CP049702.1\|WP_166354606.1\|96933_97449_+\|hypothetical-protein	gnl\|CDD\|377443	pfam05014, Nuc_deoxyrib_tr, Nucleoside 2-deoxyribosyltransferase. Nucleoside 2-deoxyribosyltransferase EC:2.4.2.6 catalyzes the cleavage of the glycosidic bonds of 2`-deoxyribonucleosides.	0.0042402
NZ_CP049702.1\|WP_166354623.1\|109206_112704_+\|DUF3883-domain-containing-protein	gnl\|CDD\|350769	cd18011, DEXDc_RapA, DEXH-box helicase domain of RapA. In bacteria, RapA is an RNA polymerase (RNAP)-associated SWI2/SNF2 (switch/sucrose non-fermentable) protein that mediates RNAP recycling during transcription. The ATPase activity of RapA is stimulated by its interaction with RNAP and inhibited by its N-terminal domain. The conformational changes of RapA and its interaction with RNAP are essential for RNAP recycling. RapA is part of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	6.52506e-76
NZ_CP049702.1\|WP_166354603.1\|93526_95635_+\|ATP-binding-protein	gnl\|CDD\|367112	pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.	0.000149632
NZ_CP049702.1\|WP_166354599.1\|89803_91666_+\|hypothetical-protein	gnl\|CDD\|273716	TIGR01613, putative_primase, phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus. [DNA metabolism, DNA replication, recombination, and repair, Mobile and extrachromosomal element functions, Prophage functions].	1.22717e-35
NZ_CP049702.1\|WP_166354622.1\|108317_109181_+\|transcriptional-regulator	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	7.34786e-07
NZ_CP049702.1\|WP_166354625.1\|112700_113165_+\|hypothetical-protein	gnl\|CDD\|119346	cd06554, ASCH_ASC-1_like, ASC-1 homology domain, ASC-1-like subfamily. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation. The domain has been named after the ASC-1 protein, the activating signal cointegrator 1 or thyroid hormone receptor interactor protein 4 (TRIP4). ASC-1 is conserved in many eukaryotes and has been suggested to participate in a protein complex that interacts with RNA. It has been shown that ASC-1 mediates the interaction between various transciption factors and the basal transcriptional machinery.	0.00030225
NZ_CP049702.1\|WP_166354620.1\|107024_108158_-\|hypothetical-protein	gnl\|CDD\|293817	cd07731, ComA-like_MBL-fold, Competence protein ComA, ComEC and related proteins; MBL-fold metallo hydrolase domain. This subgroup includes proteins required for natural transformation competence including Neisseria gonorrhoeae ComA, Pseudomonas stutzeri ComA, Bacillus subtilis ComEC (also known as ComE operon protein 3) and Haemophilus influenza ORF2 encoded by the rec-2 gene, as well as Escherichia coli YcaI which does not mediate spontaneous plasmid transformation on nutrient-containing agar plates. It also includes the phosphorylcholine esterase (Pce) domain of choline-binding protein e from streptococcus pneumonia. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. .	3.46499e-05
NZ_CP049702.1\|WP_166354597.1\|89524_89716_+\|hypothetical-protein	gnl\|CDD\|133381	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Unique to this family, is a TipAL-like, lineage specific Bacilli subgroup, which has five conserved cysteines in the C-terminus of the protein.	0.00475389
NZ_CP049702.1\|WP_166354604.1\|95887_96934_+\|hypothetical-protein	gnl\|CDD\|372947	pfam14175, YaaC, YaaC-like Protein. The YaaC-like protein family includes the B. subtilis YaaC protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 320 and 333 amino acids in length.	6.35794e-51

>NZ_CP049702.1|WP_166354612.1|99646_100228_+|hypothetical-protein
MNTVSVGIDKLHDSGRSSSSSRFTSEWAQRAGWAQTTTLLASSILLFLFARSIIWGQEVSLEDVPLLLGGVLPYGIFLGAEEAASRFSRTRLPIGAARFLAWSWVASLFMFVGAHVLRLFDPLERPIRSMFEPSFLRYESYALAYTALGFAFAGVIALGLSRNVAHRSWARVIAAGFAFNVLYFGVALFVVRW
>NZ_CP049702.1|WP_166354610.1|98759_99593_+|hypothetical-protein
MTKIWTNLMRSFLVSIILIPPAVAKDACGFLGKDDSELTNGSVFYATPQGWTHFSSFSAMGIGKQQAVTFVYVVRELFRGDRSGALIVKSGVYNGDSAQRPQGDRILLVRKDNVTDRQCPQPRPFNDTLVSGKGYEDYHEYQATETPELKTELSTFERFHFKYRKDSECIGTDDARAGFFNYDYNASQFSYNTGVVDGGARVGIRFNLVGRPIYAGPAGLWQRRTELKYYHTVDGMQCSKFNLVVNGDDRNFLRVNDLEGRQDPPSKRRAKEFRVEN
>NZ_CP049702.1|WP_166354608.1|98004_98208_-|hypothetical-protein
MLFGTIDEWHRGKRRQKKIYSSETLRLPSAPSGEWDYIQLPAVGGTSVSPLPLLGFSELLREGVEDL
>NZ_CP049702.1|WP_166354606.1|96933_97449_+|hypothetical-protein
MRIYIACALTHVPRGPVFDEHVSFIHQLAENLKMNGHEVKYALVDSDPQLDSRPFDERARLCYLWDRSMVEEAELMIAEASWASTGLGIEMQIAENKGIPIIVCFKDFQINRVKTVTYENPDHTSHHLQVGDGIITLMALGVPNIFRLIEYFSPDDGVAQIIGALDVLDRQ
>NZ_CP049702.1|WP_166354604.1|95887_96934_+|hypothetical-protein
MSIVAIRLKGREIAPHKAVISPLLTSRTVLTNSPWTFVALWLKRNRKPRALFYWEQAEEFHRASVGLPLRSAPLLLYYCFMNATKALLAAKGVSFDERHGVSAYPKVVTGGKRTFAGEGIKIHTNGILPSLSTYYGETEASSTHTLQELLFNMVFVHRTYCLTYSSQKEMFLPLANSGYVYDTRTKEVFFKANIANNIPYLRAIKKLPAGFVAAPIIGPRAIRSVASLSWRRPGRPTATNVHDLIAFNRSMRQELHFINGAQALWYLRSRVAGPKLLDRQLPTLILAAIHRLSEICRYQPLQLESLLNGQKNWLLSEFIQMSADQFIDEIASEMTGFQFLVPNVRAPS
>NZ_CP049702.1|WP_166354603.1|93526_95635_+|ATP-binding-protein
MPTLTPNIENRVRKLAKPSNAAQGLQPLFEAVSNSVYAVEDRFEKDAAKGRISIRVTSLSNPDKIEIVVSDNGIGLDAGRYEAFCTIDTDFKRAKGGKGVGRLFWLDAFKEIVVESVYESATGRARRAFSFVLNNKEQIRPSMEDRPETGLSIGTRITFKGLRTQEYADTFPKRADTFLRYFSAHFIADFLMGDGPTIAVDLDGDLTTYPQAIAELTVGKPLKADSFELEEFGVFSIVGFTCRAEASTGLDGKHQLHLLANGRTVETRKVDNLLGVTNLERNSERDLVFHGCVSSEYLDARVNEGRTAFNLTEKTLNQISRGCMEQVRTALLPAQVDAYVKERQANYQSFVSRYPTFGFDDDETQLERVPFHATTAEEFAAGLVKYQIRREEDRQDALQALIDALDLEDVPANFQQIVVDAAKGIQASEQLALAQHVVRRKLALELLEKLIRRIRTRDGKDDDHHLEKTLHSFIVPMGIRGSNPKEIKSRSHELWIVDERLAFTRAFASDKRLDAILAKGGSADRPDLLVWDLAYGLGVTDSGEQEAVDVSEPLRTVMIVEFKKPGRTSYPAAEDQIENQITKYLAQLQGGEIESFDRTRVRVAQDCIFHCYVVADIVGDLKQQLSNWETTANGQGRIRPLKNQYRGSIEVIQWQDLVNDAWMRNNATLRAAGLSRSKSTLASESKPPPEGLRERVFEPAGK
>NZ_CP049702.1|WP_166354601.1|91820_92846_+|hypothetical-protein
MAQVPHLRTQHGAASTSAEAKPSYTWIVFLLAIMFFGAAIVLVLGAKYLQIDPVWELLAVPFNLAMTGALILFYFLTSSATIDRQIYKVGGAIAGFLVLFTLFYNLSREPFLSESAVIKFAQNPLSKRFLQISDRYDEIGKLKNETLTKIADSAVQNLRTTFDQLAQGTYVVNAEELPTYLLPMIKNARHSFHATQYVFPEKFWGQYWANKYFDENIKAVKERKVDLLRIFIMAPADGPQQAKVIDDLIQKHIQNGISLRLIDREQYLKSHNNNDDDLQDVLIVDDQLSGFLLLNRFGNFNRVEFSINRDIIDQRKRNFDRLLASSMSYEEWKASHPSKPQ
>NZ_CP049702.1|WP_166354599.1|89803_91666_+|hypothetical-protein
MSNNEQITCASASQVTIAVRPAFTVTVVHPESDSDYEVEPNFDFGPLPRNGWNNAVDVAEAKRRCQDMAYCPLDNAWGREVIFNLAMDLRDLGISKALAVGLIDTYCTSPLTKGDVNEQVHHAYLAARIEPGLESSVGRVSAANAAVIGGSLDDAWREASEGDPPTVWPKPLVYQGKDNASKSAETFLAERPGKLISSDGALYTLEDNCVWRVLEDDELAAEIRATDPTNVLDVGKIFLMVKAIHLARFVKARPFEWIDKPIDAPEPTELVLATNGILDARTLALAPHTGRYFATGVPVWEYDPDATCPLWLGKLDEWLHPSFHATLQEFMGYLLTSDTSIEVLLAMMGAKRGGKGTITKVMQALVGKHHHASVTLNDLGSDFGLAGLMDKRAVFIPDAHDAKHPAAAIERIKSITGNDELSVNRKNQAMLSARIPAKIVLVANKHPKFLDESGALADRELVLVFESSFAKVKDTELGNKLRAEWSGIANWALEGLRRLRANGNRFTIGERGRKAQQELAEAQSPALRFAKDYLVVTGDEADAVPLAVVYRTYEHWAIHEEGMSGREQRNKTDFKADLIAALGERGVRFHPKMARRWRDPRVETKHGKGAAVRRWFTGGD
>NZ_CP049702.1|WP_166354597.1|89524_89716_+|hypothetical-protein
MKLKGDEYVTVPEFAELAGVTVRTFYQYRHWRLYNLPAPDLKVGTALLWKRSRAEAWASKPRG
>NZ_CP049702.1|WP_166354596.1|88530_89481_+|hypothetical-protein
MSMKVVTKPIAKVIKQPRPFGAGREWKAMNFKWRDVRGNDHVVVFTTGMPAPNTPEGIGHFNAVLAEARSYAAYCTKTGDGFGEFRVSRNGEYFGRGWFPAGTTAEDVPFLLARLLKQGLRGHIVPGIKRAEDVADALGVAECFANASRPVSAAPYDFHVSFTHFDDGTREYLSIAEGDSLPPHLAGVYEAKLADYRKVLAVFQPRAFRIYNVGRGDLRPTAIMELRPDPTGDLRYHEIGSIPDGASGGGYIAEAHGRFGEPPTADEFGRISARLAATGRWMTLVKEKDDNVNPETMLLMSTLSPEEFVFESDDFG
>NZ_CP049702.1|WP_166354614.1|103327_103513_-|hypothetical-protein
MLFGTIDEWHRGKRRQKKIYSSETLRLPSAPGGEWDYVQLPAVGGTSVSPLPLLGFSELLR
>NZ_CP049702.1|WP_166354616.1|103559_104771_-|patatin
MNESAEPKIGLALSGGGARAIAFHLGCLRALHRLGLLDRVAVLSTVSGGSVIGAYFHAQVNAKGGDFAAFEANIRALLARGLARPMCRKLFSWLGIKVAAAFAMIGIVALGITLIKMLMKIARWIMPRALAADFERFEMRSPLHRFASRTTLLEAVLNDLLFKEASLNSLRSQPHLVINATELRTGSAFRFGTKESGSWRWGKLHRNDASVAHAVAASAAYPLFLPAFDETLTFEKGGELKPSRVILTDGGVYDNLGLGCLWPDRSPDVSLNVVPIDVIVCCSAGYGLRQDPPSQFIGARMLSVFSTIFDRAQNAAIHRLHEAQRTGQIKSFLFPYLGQLDRNLPNPPADLVRREEAHAYPTDFNAMSNEWIERLSLRGEQLTLCLALAYIPHLINETSVAPA
>NZ_CP049702.1|WP_166354618.1|104767_107023_-|hypothetical-protein
MGLHGWWSEFGQTVEAADDLVSVAARELAAAIDGSIPGVTVTGFKECATTGHTAVGFEVEVERPQDLAHPIRATEPVAVVFAAQGGQPRVLALRDDFPDTPHQNWTPQGAPCSLCIDDRPWSEAKLTYRPADLIRRIQLWLAKAARGELHDTAQPPDPLFFISQLAIIVPRSALLPATEPVELIGFIRPDNPALIITRVVADTDPRRNGLPGFVVVALRAQPQSMTRLRHAPVTLAALNAELLQAGIDLDGEIKTRLKAWAGIANDSVRRLSSRIAIVVTFPVTAPDSTITDDVRAFISLEAAGQIGVEWGLLLLANSKAAGVAGADNVFVRAVPEGTPSTDDIKIEPAQVHLAFDRELAATVADQATPDRRRAVLVGGGALGSQIGINLAREGRFSWTVADNDYLLPHNMARHALLADEIGAPKALALARQMGWLLNESFTAVAGDVTRPDAELVKEFGEAEVIIDASASVAVSRYLADLGDAHGRRLCVFFNPAGTAVVLLAESADRSITLRNLEAQYHRLVQTDPALDDHLRAEPGVRYSGSCRALTNRIPATNAALLSALGARGLVEALKGDEAAVRIWKVADTGAVQFIEQRGAPAHRATLGDWTIVYDDDLLAELGRLRDGRLPHETGGVLLGIADMSRKSIHVVHALPEPEDSRGSAEGFERGVVGLRTAVSRAVESSLHQLSYVGEWHSHPRKSSPLPSAIDLAQIAWLGGELEHEGLPGLMAIAADDGVFAFVMPRPRSRAS
>NZ_CP049702.1|WP_166354620.1|107024_108158_-|hypothetical-protein
MTATLTFHPLGNADCTRFDLADGKKLLIDYADMKNRDDPWDRRIDLPAELKADLRAAQRDYYNVVCFTHLDDDHCRGSGDFFWWDHALKYQGEGRIKIRELWVPAAAILEDGLDECARVIRQEARYRLRKGSGIRIFSRPAKLKEWLEANGLTLESRAHLITDAGQLVPGFSLLGTERVQFFIHSPFGWRQNDNEIVDRNQDSVVFQATFLEGSRQTHALFMSDIDHESIEQIVKTSKRHKNEDRLLWDIFKVPHHCSYTAIGPEKGVDETKPTDEVKWLCETQGQERHTMMSTSKSMPIKGSDEDKDVQPPHRQAGAYYKRVANTKDGQFRVTMDLPSAHKPKPTKIEITDRGARMLTVSATVGTASIVSTPARAG
>NZ_CP049702.1|WP_166354622.1|108317_109181_+|transcriptional-regulator
MRWGVEQRLEFIEFRLFWEGSINRADIVGFFGVSVPQASKDLTLYQERAPGNVEYDTRAKRYVAAEKFVLRFLNPDPYVYLAQLRAVAEGTVSSQDSSIAVLPRADVALTPKRDIDITVLRKILDAAREGVSVEVFYQSMNKVRPDPIWRRITPHAFGYDGLRWHVRAYCHLDHKFKDFLLPRILEVGEKGAAGVTGQEDRLWNNYFDVVIGPHPDLTESQKKVVAKDYGFDHGNGILSVRYAMLFYVLKRLGLLGDAAKQSARTQHIVTINRKETEAALEKAELQL
>NZ_CP049702.1|WP_166354623.1|109206_112704_+|DUF3883-domain-containing-protein
MGARLEDVKNGASVRGIASAQPVHVVSIDWIGDQAINVVYRDHDGKVAETVLYRDDEHRLDVEQSGRPWSFDADGELLRLVTEANRIKLAHYFDPYLAIHTSLVDPLPHQISAVYGEMLPRQPLRFLLADDPGAGKTIMAGLFIKELIARSDLERCLVVAPGSLVEQWQDELGQKFNLEFDILTRDMIETSRSGNPFNDRDRLIVRLDVLARNEELQEKLMSAREWDLIICDEAHRMSATYFGGEVKYTRRYQVGQKLGQVCRHLLLMSATPHNGKEEDFQLFMALLDGDRFEGRFRDGVHYADTEDMMRRLTKEELLKFDGRPLFPQRRARTVKYQLSEGEAALYAAVTDYVRNEMNRVERFAEGDNKKRNNVGFALQILQRRLASSPAAIYQSLKRRRERLENELGEARLAAKGRRAGVAEPAVNPDILGNIEEYGQEEVDELEDLISTAATTAETVEQLALDVETLKGLESMALGVLRSGVDTKWTQLNRILDDELMIDATGNRRKLIIFTEPKDTLHYLLEKVRARLGNPEAVDVIHGGVTREERRKVIERFMQDKDLLVLIAAAGEGVNLQRGHLMVNYDLPWNPNKIEQRFGRIHRIGQTEVCHLWNLVAADTREGEVYARLLEKLEAAREALGGRVYDVLGELFEGTSLKDLLFQAIQYGEREDVKAYLFRQVDGAVDQSHLLELLRRRALTNDTMPAAEVEELRLDMERAEAQRLQPHHIQSFFVEAFQHLGGRLKRREEGRWEVTHVPVRIRERDRQIGTGAPIQKQYERICFDKSQINQQPVAAFICPGHPLLEAVISLIREQYESIMRQGAILVDETDSGEALSAIFLLEHTVQDGRTTSAGKPHVISQRLQFAAINKTGQTANAGIAPHLNLRPATAEEVGAVRDLLDEDWLTSELEKTAVRFATVELAQRHVMEVKGRRLPEIDKVEQEVRSRLKKEINYWDSRAFELKEEEKAGRKTRLNWQNAQRRAEELAERQKRRMDQLQQERFISSQPPRVRGGMVVIPRGLLDARKAPSITNHFAEDPAARKEIELAAMQAVMAAERALGHAPVDVSAQKVGYGIASHDPKSGHLRFIEVKGRIDGADSVMITRQEVITSLHEPDKFILAIVSVAGGFAHAPRYVRGPLVEREPGFLETAIQFDLRRLLERAEAPL
>NZ_CP049702.1|WP_166354625.1|112700_113165_+|hypothetical-protein
MRIAKGLIIADPWIGYLLDGSKTWEMRSSATSHRGWFGLIRKGTGAVYGVAKLAEVGLPLSPPEMIATFERHRIPEHMIRSGGVAKWNVPWKLTDVRPLDRQVPYRHKSGAVTWVELNEEAIDGVMAGHWGATSPKASCPAACAAWRRTPVCDQ
>NZ_CP049702.1|WP_166354627.1|113152_113581_+|hypothetical-protein
MRPVTASQSLHALQTAAAADESPEAASGPPRWIGEIEINDANLRNNHFYLRPLIDKFPGDVIGGSNMASKAKGEVVIDWGGPEPVQTDIDGQDKKFFRARGWIGAFYKFHGARAGDFVVIEEMAPSRYRVSLKRRDSVGRVS
>NZ_CP049702.1|WP_166354629.1|113577_114069_+|hypothetical-protein
MKGFQDFAILAPVPLEHLPSGEEIARRTGFVAFGSRKWELFRKVDELRNGARVPVLIYPSHEDVPAKDSFIVSWVGWYVGCEESSNGKHSKGMMHRPPTTGQYTSDNQGHWAVFWHVRDLHELPVAQRLPISAIQTVKGGWRKSAPPRGPELVATPSTQELPL
>NZ_CP049702.1|WP_166354631.1|114083_118307_+|ATPase
MKATVAAPPGYFQPIRERASKRWDQLEADPELAGPWHQLFKQVQSPRHILSELLQNADDAGASEARVTIEDDRFVFEHNGEDFIEAHFASICRFGYSNKRALHTIGFRGIGFKSTFSLGDRVELFTPTLAVAFEHARFTQPHWIDSRQLTSGTTRVEVAIANRLLRREVEKNLDEWLKSPVSLLFFKKIRRLRIGDSEVHWQSLGPGPIAESEWMALDEKANDPFLLVRSAEEAFPADALDEIRKERMLGAEDGGDFPPCRVEIVLGAKGRLYVVLPTGVETALPFACNAPFIQDPARLKIKDPETSPTNRWLLKRTGELAAIAMMEWLEQTKASAPDRADAYGLLPDVDREATTLEGACGATVELAFAEAIDDRLILLTEDGVLVAAEAAIAVPQPIFDVWPADQAMALLDAKSRPALCQHVSFKDRTKLVRWGLVEEFSKADLLERLRSNHLPRPSTWRHLLNLWSYIAPEVTGWQCQDADCLRIVPVQGKEVLYAASEIVRLGEKKLLQSEEDWEFLASHLIVLNQNWTRFLAEQRRDKAESSSRNDPVQAAFAVLKEIGLDGTSDVNAVIERVAADYFSSGELKLAQCVQLAQISAKLGVTVGESFRYACADRKLRPTAKGVLFDENGALEELLPVAVQQTQLLHADYVANFKSCSREDWLRWVGSGRSGLLMFAPFVQKSRRIYGRQQLTTEARARGLRDTLYYPYVTNHFVIEDWDFSADYWKHWEALSKSDPGVWAKVAGKILDQRDAYWSRASSARLSQVATTGSTRSLTSEPLLADWLLKLRAKPCLPDTRNMIQVPADLVRRTPETEALIDVEPFVHGLLDRETTRPLLDLLGVRSTPSGPGRLLDRLRALAKSDKAPVHEVEKWYRRLDQMLDGASTPDAQSIKDAFKAEKLIFAQDGTWVASGGVFLAGDEEDVPDAAVIRSSVLDLSLWRRIGVAERPSADLALQWLGTLTSGKALSPDDARRVRALMSRYPTRIWEECGHWMNLSGEWVETDALAYGLSMQSLFTYGHLHDWVKRKTADFRQLSAETVRNPPFSSLRALSDLVEERFNQPPLFPGLEDRCAWLTAFGTQLARIELADIVDTERVRTFAAAIAATSWISAPKLEVIPYLDGVPAGTARLTDILWLDGKLFVSPLSKAKLAKRVPEEIGKSLSADIRAALAYAFERSPADIKDYLEENFTLGPEQKAAAPMVEAPLAAAPVGGSAVDEPTADPQEAAPEGVEAAPPSDRDLTEDEEPATPPEPEAPHQEPEGGLLVPEAVSRPRTPPKPLRPSLIARFALALGYKPDGEDRFYHSDGSWIGRANGARFPWERRLAGGEVQRHYYPKEHCLELEPLQIEADVWGLLDQKPDAYSFILVNPEGEPVEMTGARLRALRDGGEITIHPATYRLVYDLDQ

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP049702_1	1.1\|102819\|59\|NZ_CP049702\|CRISPRCasFinder	102819-102877	59	NZ_CP049702	Bradyrhizobium sp. 1S5 strain 323S2 plasmid pB323S2c, complete sequence	102819-102877	0	1.0

1. spacer 1.1|102819|59|NZ_CP049702|CRISPRCasFinder matches to NZ_CP049702 (Bradyrhizobium sp. 1S5 strain 323S2 plasmid pB323S2c, complete sequence) position: , mismatch: 0, identity: 1.0

gcgtgccgtcgaagtaatcgcggtcggttctgctcactggtaggcccccaaccgttgga	CRISPR spacer
gcgtgccgtcgaagtaatcgcggtcggttctgctcactggtaggcccccaaccgttgga	Protospacer
***********************************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

23590 : 62133

Mycobacterium_phage(37.5%)

integrase,transposase

attL 14172:14187|attR 52234:52249

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
14172:14187	attL	NA	NA	NA	NA
WP_166354563.1\|23590_24673_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_166354565.1\|24669_25077_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_028153011.1\|25076_25331_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_166354315.1\|25639_26581_+	DUF1403 family protein	NA	NA	NA	NA
WP_166354567.1\|26582_27269_+	SMC-Scp complex subunit ScpB	NA	NA	NA	NA
WP_035681562.1\|27698_28052_-	hypothetical protein	NA	NA	NA	NA
WP_060910107.1\|28513_29857_-\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_155252163.1\|30214_30388_-	hypothetical protein	NA	NA	NA	NA
WP_157790585.1\|31096_31261_+	hypothetical protein	NA	NA	NA	NA
WP_166354569.1\|31426_33628_+	ATP-dependent RecD-like DNA helicase	A0A218KCE8	Bacillus_phage	2.7e-56	31.2
WP_018273921.1\|33637_34015_+	hypothetical protein	NA	NA	NA	NA
WP_018273922.1\|34102_36805_+	DEAD/DEAH box helicase	A0A160DDK8	Gordonia_phage	1.2e-37	27.4
WP_086023025.1\|37516_38645_+\|transposase	IS3-like element ISRj2 family transposase	A0A2P1JR32	Mycobacterium_phage	5.3e-16	34.2
WP_155258298.1\|39118_39469_+	hypothetical protein	NA	NA	NA	NA
WP_018273925.1\|39446_39716_-	hypothetical protein	NA	NA	NA	NA
WP_166354571.1\|41626_43573_+	glycosyltransferase	M1GYM3	Paramecium_bursaria_Chlorella_virus	1.5e-29	33.8
WP_166354700.1\|43936_45065_+\|transposase	IS3 family transposase	A0A2P1JR32	Mycobacterium_phage	2.0e-15	33.7
WP_060913273.1\|47647_47836_+	hypothetical protein	NA	NA	NA	NA
WP_038975248.1\|47857_48448_+	hypothetical protein	NA	NA	NA	NA
WP_028154428.1\|48801_50034_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_018273862.1\|50168_51518_-\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_085971921.1\|51592_52353_-\|transposase	IS5-like element ISBj2 family transposase	A0A0N9SJT9	Paenibacillus_phage	3.6e-08	35.5
52234:52249	attR	NA	NA	NA	NA
WP_028154658.1\|54750_55059_+	hypothetical protein	NA	NA	NA	NA
WP_085971921.1\|57342_58102_+\|transposase	IS5-like element ISBj2 family transposase	A0A0N9SJT9	Paenibacillus_phage	3.6e-08	35.5
WP_166354573.1\|58095_58683_-	SEC-C domain-containing protein	NA	NA	NA	NA
WP_086023025.1\|61004_62133_+\|transposase	IS3-like element ISRj2 family transposase	A0A2P1JR32	Mycobacterium_phage	5.3e-16	34.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP049699

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP049699_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049699_1

2339130-2339393

Orphan

Consensus_repeat	Method
CGGTGCGGTGCTGGCTCAAAACTCGAAAAGTTGGGAGCTCCCAACAGGGC	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP049699_1

>merge|NZ_CP049699|1|2339130-2339393|PILER-CR
TGCTGGCTCAAAACTCGAAAAGTTGGGAGCTCCCAACAGGGCCGCTTCGGACCTAGTTAGCATCAACGAAAATCCGGCCAGCAGCCGTCTTCCTCGTGGCTGCCGGTGCGGTGCTGGCTCAAAACTCGAAAAGTTGGGAGCTCCCAACAGGGCCGCTTCGGACCTAGTTAGCATCAACGAAAATCCGGCCAGCAGCCGTCTTCCTCGTGGCTGCCGGTGCGGTGCTGGCTCAAAACTCGAAAAGTTGGGAGCTCCCAACAGGGC

>NZ_CP049699|1|1|2339130-2339393|PILER-CR
TGCTGGCTCAAAACTCGAAAAGTTGGGAGCTCCCAACAGGGCCGCTTCGGACC	TAGTTAGCATCAACGAAAATCCGGCCAGCAGCCGTCTTCCTCGTGGCTGCCGGTGCGGTGC
TGGCTCAAAACTCGAAAAGTTGGGAGCTCCCAACAGGGCCGCTTCGGACCTAG	TTAGCATCAACGAAAATCCGGCCAGCAGCCGTCTTCCTCGTGGCTGCCGGTGCGGTGC
TGGCTCAAAACTCGAAAAGTTGGGAGCTCCCAACAGGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049699.1\|WP_157788368.1\|2338759_2339026_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049699.1\|WP_166342997.1\|2340274_2340505_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049699.1\|WP_166343007.1\|2349562_2350369_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235975
NZ_CP049699.1\|WP_166353295.1\|2329494_2330904_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049699.1\|WP_166342993.1\|2339413_2339794_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049699.1\|WP_063982107.1\|2346252_2346723_+\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|224991
NZ_CP049699.1\|WP_166342991.1\|2338050_2338689_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049699.1\|WP_166342987.1\|2332649_2333045_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049699.1\|WP_166342995.1\|2339971_2340151_+\|AlpA-family-phage-regulatory-protein	unknown	unknown	gnl\|CDD\|283558
NZ_CP049699.1\|WP_166343001.1\|2342031_2342814_-\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|235664
NZ_CP049699.1\|WP_166343003.1\|2345265_2346237_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270296
NZ_CP049699.1\|WP_166342985.1\|2331028_2332192_-\|trypsin-like-peptidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|379142
NZ_CP049699.1\|WP_166353297.1\|2346725_2348852_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	unknown	unknown	gnl\|CDD\|224446
NZ_CP049699.1\|WP_109866565.1\|2333261_2334391_+\|IS3-like-element-ISRj2-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP049699.1\|WP_166342989.1\|2335772_2336318_-\|DUF2384-domain-containing-protein	unknown	unknown	gnl\|CDD\|131346
NZ_CP049699.1\|WP_166342999.1\|2340501_2340732_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049699.1\|WP_166343005.1\|2348848_2349547_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|379243
NZ_CP049699.1\|WP_038934721.1\|2335506_2335737_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049699.1\|WP_166342983.1\|2328196_2329381_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271177
NZ_CP049699.1\|WP_038968105.1\|2336306_2337575_+\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|307151

Protein	Function_ID	Function_description	E-value
NZ_CP049699.1\|WP_166343001.1\|2342031_2342814_-\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|235664	PRK05995, PRK05995, enoyl-CoA hydratase; Provisional.	2.60725e-139
NZ_CP049699.1\|WP_038968105.1\|2336306_2337575_+\|IS256-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	7.65753e-58
NZ_CP049699.1\|WP_166353297.1\|2346725_2348852_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	gnl\|CDD\|224446	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion].	2.94972e-54
NZ_CP049699.1\|WP_063982107.1\|2346252_2346723_+\|(2Fe-2S)-binding-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	3.29037e-59
NZ_CP049699.1\|WP_166342995.1\|2339971_2340151_+\|AlpA-family-phage-regulatory-protein	gnl\|CDD\|283558	pfam05930, Phage_AlpA, Prophage CP4-57 regulatory protein (AlpA). This family consists of several short bacterial and phage proteins which are related to the E. coli protein AlpA. AlpA suppress two phenotypes of a delta lon protease mutant, overproduction of capsular polysaccharide and sensitivity to UV light. Several of the sequences in this family are thought to be DNA-binding proteins.	2.08838e-05
NZ_CP049699.1\|WP_166343003.1\|2345265_2346237_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	3.22475e-134
NZ_CP049699.1\|WP_166342985.1\|2331028_2332192_-\|trypsin-like-peptidase-domain-containing-protein	gnl\|CDD\|379142	pfam13365, Trypsin_2, Trypsin-like peptidase domain. This family includes trypsin-like peptidase domains.	2.05697e-09
NZ_CP049699.1\|WP_109866565.1\|2333261_2334391_+\|IS3-like-element-ISRj2-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	8.99424e-45
NZ_CP049699.1\|WP_166342989.1\|2335772_2336318_-\|DUF2384-domain-containing-protein	gnl\|CDD\|131346	TIGR02293, conserved_protein_of_unknown_function, putative toxin-antitoxin system antitoxin component, TIGR02293 family. Proteins in this family are found almost exclusively in the Proteobacteria, but also in Gloeobacter violaceus PCC 7421, a cyanobacterium. This family was proposed by Makarova, et al. (2009) to be the antitoxin component of a new class of type 2 toxin-antitoxin system, or addiction module. [Cellular processes, Other].	1.0857e-32
NZ_CP049699.1\|WP_166343005.1\|2348848_2349547_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|379243	pfam13531, SBP_bac_11, Bacterial extracellular solute-binding protein. This family includes bacterial extracellular solute-binding proteins.	1.73148e-15
NZ_CP049699.1\|WP_166343007.1\|2349562_2350369_-\|SDR-family-oxidoreductase	gnl\|CDD\|235975	PRK07231, FabG-like, SDR family oxidoreductase.	4.98659e-60
NZ_CP049699.1\|WP_166342983.1\|2328196_2329381_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271177	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain. Rci protein is a tyrosine recombinase specifically involved in Shufflon type of DNA rearrangement in bacteria. The shufflon of plasmid R64 consists of four invertible DNA segments which are separated and flanked by seven 19-bp repeat sequences. RCI recombinase facilitates the site-specific recombination between any inverted repeats results in an inversion of the DNA segment(s) either independently or in groups. HP1 integrase promotes site-specific recombination of the HP1 genome into that of Haemophilus influenza. Bacteriophage Hp1_like integrases are tyrosine based site specific recombinases. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	1.08108e-14

>NZ_CP049699.1|WP_157788368.1|2338759_2339026_+|hypothetical-protein
MTLRVTVELIPGGQERFIRTLARAEISNVGGSAWVGDYEFTVGEEDNDLTAVRAWTDTGRIEKHSRATSVWLLVAKVAMWAHRRSQED
>NZ_CP049699.1|WP_166342991.1|2338050_2338689_+|hypothetical-protein
MHSKPVIFVVGADKGGVGKTTVTRAFLDFLDARGVSNRAFDTENEVAEGVRKRFFPERTEIVNLRDSDDQMKVFDTISGATATVIDVRAGLLSPTRQLLEDIGFLDPSRFGITIMHVLGNNQASIDELAPVAQKIAGMRHIAIGNHINDTKFAFPAGAVKIPMLSAKASEAVDRFNSGFAAFGANNQLAVLSGTVKKWLKDVFTEFDRVKLP
>NZ_CP049699.1|WP_038968105.1|2336306_2337575_+|IS256-family-transposase
MNEHSNIVPLRQPDEIDDPLTNILRSGARQLLAQAVEMEAEAFLAAMKGLKRPDGRDRLVRHGHGPVRTIQTGIGAVEVARVKIRDRAVTSDGERIRFTSAILPLWARRTKSLDALLPVLYLRGISTGDFQEALAALLGKDAPNLSPGVVSRLTTEWQLEYERWQKRDLSARRYVYVWADGVFLQARMEDHSECMLVLIGATPEGKKELIGFQVGVRESTQSWHELLVEAKTRGLKIAPEIAVGDGALGFWKALDEVFPATRHQRCWVHKTANILNKVAVSVQASMKKDLREVYLASNRASAEVAIDVFAEKYGAKYDKAVECLTKDRDAMLAFYEFPAEHWDHLRTTNPIESVFATVRHRTVRTKGSLSSTTAKLMVFKLLCAASKTWRRLKGTNQLPKVSAGVRFENGIEVIQVPENHAA
>NZ_CP049699.1|WP_166342989.1|2335772_2336318_-|DUF2384-domain-containing-protein
MLVHGVSLSLRFWQARHPPRYAAYLIPSSPSFPHSSTRLAAVASLLGAPSTFRNVPQSPLEAHEMLLNGLPSRALLHLVENLAFLRWDDSFAKAIGMSHRTYQRHASAGGKPLSPEQSGRTWKLAEVLAKATSIFGSMQEAEQWLERPAIGLNQHKPIDLLATPAGVELVEDFLVRLEYGV
>NZ_CP049699.1|WP_038934721.1|2335506_2335737_+|hypothetical-protein
MQIKLPATDLKAVQSVDSIELKDEAGRPIGQYLFGKGHGRTIFLFGKYKGTFKTHAECQAFVDGILAVINHHGTTQ
>NZ_CP049699.1|WP_109866565.1|2333261_2334391_+|IS3-like-element-ISRj2-family-transposase
MTKKSRRTHSPAFKAKVALAAVKGDKTLAELAQLFDVHPNQITIWKNQLLEGAAGVFGHDKTSAETPVDLKALHAKIGELALENGFFVRRAHQGGPAERKAMIDRGHDLSIVRQAKVLKLARSTVYYEPRPVSAEDLALMRRLDELHLDYPFAGARMLRSLLRREGVYAGRRHIATLMKRMGIEAVYRRPNTSKPAPGHKIYPYLLRGLKIERPDHAWAMDITYIPMRRGFVYLAAVVDVFSRRVLAHRVSITMEAAFCVEAVQEALAKHGRPAIFNTDQGSQFTSLEFTDVLLDAKIAISMDGKGAWRDNVFVERLWRTVKYEEVYLRAYDSVSEARASIAKYLAFYNQGRPHSSLDGRTPDEAYFGTQAMVMAA
>NZ_CP049699.1|WP_166342987.1|2332649_2333045_-|hypothetical-protein
MMIDNKLRWLSEPALKGGAFKARENAKIEADEAMWLGVAEAADRCLEILVRRRTGRGVWYALVQILRWDAPRRTAETVASFHERHDSMAEAEEAARRMLAEHAKHFYSDMSVEAEVLCELEWDQDSEARLL
>NZ_CP049699.1|WP_166342985.1|2331028_2332192_-|trypsin-like-peptidase-domain-containing-protein
MLIPAFFLNCVVAIGDVATALTPGAPPRVEWQTTGTGFFYGYVLKDDADVAKRQYEIYLVTARHVVAGKQNLKIRVNPASVGATGKEFEVPSNPPPGATTWFYHPDPTIDVAAVRVNFNELTASGFEVNFFTQDVATILKSQMRDKQVAAGDGVFVLGFPMNLAGQQRNYVIVRQGVIARNSEMLDNASTTFMVDAFVFPGNSGGPVVLKPEIVSIEGTSGHDRAALIGIVTQSRNYVDTAISPQTGRPRISFEENAGLAEVLPLDYVNEAITTYRRSKGWPDPLPRAAATSQPPAESDTPVAPVPAEQQRGLRPRGRKRLAAVKAVKKALISKKALVAKKALAAKRGRSAKRIVAKQALGAKPTSNVRRIHRVGEKPGNDDTDEKV
>NZ_CP049699.1|WP_166353295.1|2329494_2330904_-|hypothetical-protein
MSKAIATVGISLAEGFFEYFRSSASLLDYDIILFRPDIASFTAFDSYQGLPSYGDDESFELRRVSEHWRLQIREAFDHGKTIVVFLPPEQIVFIASGTHEYKGKTRIRHVESYSSFHSIPVDLKSTNASGREMTLTPKGSDALKTYWSEFGAESEYNVTWDASKPGTCLTTRVGNKGVGAIMRSKTSRGALVLLPDLDFDSDKDGDQSWSTAGKRFTQRLLSSIVELDKALKASSAVTPAPSWATDPSYSTEHEKSVLSELIEAERAIESAQKHRDEVAEKAKAAGHLRALLYETGKILEHAIIEALKVLGFSASSYREGDSEFDVVFECPEGRLMGEAEGKDTKAINIDKLRQLSLNIHEDLNRDEVKSPAKGVLFGNGYRLTAPASRGVQFTEKCIMAAKSTSTALIATTELFKAAHYLSDHKNPEYAELCRRALLQDSGLISLPSPPSMPQTVTETTAEVGGISGE
>NZ_CP049699.1|WP_166342983.1|2328196_2329381_+|tyrosine-type-recombinase/integrase
MRLYLWQRTPGKSNWIIRGTDDKGQEVHESTKTTDKKTAEALRIKREGKLLLEVVHGKQAVVTFHEAVESYLDNGGSPRFLGTFDEDTRRWSGLMKELDGVLLKDIDQDRMNRIAATLYPNCQYDTINRQLWTPFIAIWRNACRAEWATPKLWVRARKPKGTNITSIKAKRVGSYPVDYATAWGFVQGLGVANQIIMTILFYTGLRPIELFVMETTQVNVPGRWITIPKSKIGEPRGVPIHEAIVPLLTDMVENRPGKLVRTWEGAPFTVYDDNGGQMKKAIAAARLRTQIFDVAPYTARHSVSTQLVINGVHPHIKDQIMGHAADDMSRLYTSVPQPKLIEAINTLPAFPDWLDADWMKSPVALTHRRAKTLKKAERAAGERAYEAWRARRVA
>NZ_CP049699.1|WP_166342993.1|2339413_2339794_-|hypothetical-protein
MAGRRAAERRLPTEKQQRTDELRKALLNRTQSAPTDEDAWWDSVLSDPRARLTTPIADRELGQITEEVLRVECLRCMRIVQITRADAIKLYSAGSVWRAVGMHLFADGCQHRTGSHEEDGCWPDFR
>NZ_CP049699.1|WP_166342995.1|2339971_2340151_+|AlpA-family-phage-regulatory-protein
MTENANNDQPVDLRPMLSVKQVLKAVPMSRATLYREMDAGHFPAARAITPKASPDSPMM
>NZ_CP049699.1|WP_166342997.1|2340274_2340505_+|hypothetical-protein
MRKRAGRKAGKADRWPYVEGIDGAGGRTAWAVNDAGLRYVVVRNFIFTLEDLSIADPQIRKGVEKAFERLDQGVAA
>NZ_CP049699.1|WP_166342999.1|2340501_2340732_+|hypothetical-protein
MSIELALRNQLAILTALENVSLRLEPQDDTATHAVRRQIAETDKASKSMASPKFDMRPREGHKDICTRDRCHCGPQ
>NZ_CP049699.1|WP_166343001.1|2342031_2342814_-|enoyl-CoA-hydratase/isomerase-family-protein
MTDTTAIITDKRGQAFWITINRPEKRNALNGEVIAGIAKGYRDAHDDKDVRVIVLTGAGDKAFCAGADLQNSGAAFAMDHSKPNVDYADLLRLSQNATKPAIARVGGVCMAGGMGLLCMTDMAIAADHVIFGLPEVKVGVFPMQVLSLLQSIAPPRLVNEWALTGEPFDAKAAQAAGLLNYVVPTVELDAKVDWLIGRIVDKSPTAIRRGKYAMRAIASMSFDESIAYTESQIALLAMTEDAKEGLKAFSEKRKPAWTGK
>NZ_CP049699.1|WP_166343003.1|2345265_2346237_+|tripartite-tricarboxylate-transporter-substrate-binding-protein
MTARRLMLALAGLLGAFAAAPSFALDYPTHAVRIVVPFGAGGPADVAARLIGNVLQESFGQPFVVENRTGAGGVIGTVEAAKSPADGYTLLMMSNTQTANESLLTPDKRKYELMRDLAPIAPVNYSDLVIVVNPQVPAKTLQEFIALAKSQPGKLNYASSGQGTPYHMAGELFKAMAGIDVVHVPYRNSGEARSGVIGGQVQMMIDAVPAMAPNIGENQVRALATTGKERSAVLPNVPTAGEAGVAGYEATIWLGLMAPAGTPKPVIDKLNAAVNAMVKRPDIVKLWTEQGAVPMSMTPGEFEKFLRGDIEKWADVVKKFDKS
>NZ_CP049699.1|WP_063982107.1|2346252_2346723_+|(2Fe-2S)-binding-protein
MPTIQFQLNGAAIAVDADPDQTLLDVLRGRLGVTGPHFGCGAGECGACHVMVGDRAMASCDMPMWSVADKDVVTVEGLGTAEQPHPLQRAFVSEQAMQCGYCVSGILISAAALLKRNPSPTETEVRAALDRNLCRCGSHNRMVRAVLRAAAETATS
>NZ_CP049699.1|WP_166353297.1|2346725_2348852_+|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit
MPSPVPKLPASLAANPKLSSWVRFSGEGGVAISPGKVEIGQGIVTALAQIAADELDVDIGRIELIRASTAASPNEGVTSGSLSVQQSGRALRHVCAEVRQRFLAAASERLGVDAALLDVDDGTISGPGNVRTSYWELAGDVSLDRDATAGAVAKPAATRGVAGHSVQRVDIPDKVFARPRFIHDCALPDLVHGRVLRPDISGARLIALDETAARVVPGLVAIVRDGGFAGVVADSEAAAEAALKALRKGATWSAGEPLPDEDDLAGFLKSQPVETTVIDARAAATTKRAARTLRRQYTRPYIAHASIAPSCAMARWDGDRLHVWTHSQGVYLLRADLAIMLELPAENIVVEHMEGAGCYGHNAADDVALDAVLLAKAAGGRPVRVQWSRHDEMSHAPFGAAMAIEIEADLDADSEIVGWRHAIWSNGHAARPGRAAQPALLAATEIANPYPRMISTNPPAANGGGGDRNSVPLYDLPAWTITSHRLLTMPVRTSALRTLGGQGNVFAIESILDEIAVLRGEDPITLRLRHLRDERASDVIRAAARRAQWKPQKQSGIGHGVGFARYKNTGAYCAAIAEIEGTDDIRVRRLTLAVDVGETINPDGVINQIEGGAIQATSWVLKERVRFDRTHITSTSWTDYPILSFSEVPAVNVEIIQRPEIEPVGAGEAAHGPVTAAIANAVYDCLGVRVRDLPITRDRIIAAMELAS
>NZ_CP049699.1|WP_166343005.1|2348848_2349547_+|ABC-transporter-substrate-binding-protein
MTTVNILSGGAAQGLVRGLSEPFKTQTGFGIDGEFGAVGLMADKLRASTPADLVILTQALLAKLAAEKLVVPSSIADIGRVETALAVRNRDPKVTVKTEADLREVLRSADAIYVPDTKASTAGQHVAKVLDQLGIAYEVASRLKIFPNGATAMRELAASTAARPIGCSQATEIIATDGIALSGSLPPGCELVTMYTAGVTARAAHPTEAAALIALLTGADRKELRRSMGFTG
>NZ_CP049699.1|WP_166343007.1|2349562_2350369_-|SDR-family-oxidoreductase
MTDYRKLFDLTGKTAVVLGAASGIGKSSAEALAGLGARVVCADRALDAAEATAAGIRDKGGWAEAASCDAASAVDVNALAKIVMQKFSRLDIAVTTPGLNIRKTILDYTEEDLDRVLNLNIKGTVWFFQAFGRIMVEQKGGSIIACSSVRAVTIEPGLGVYGSTKAAIGLLVKGFASEVGHAGVRVNAIAPSIAETALTGPFKQRPDIYNLYAGHTVFNRWSSADEVATAVAYLASDAASYVSGSTLFVDGGWTAVDGPPTGLTQLHK

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Crispr_ID: NZ_CP049699_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049699_2

3069146-3069252

Orphan

Consensus_repeat	Method
GAATAGACCGGCGGAGCGCCAGCCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP049699_2

>merge|NZ_CP049699|2|3069146-3069252|CRISPRCasFinder
GAATAGACCGGCGGAGCGCCAGCCGGACGGCCATAGCGCGGATCATCGGGCGACATCACCGGCCCCTGCGGCGGGGCGGCGGAATAGACCGGCGGAGGGCCAGCCGG

>NZ_CP049699|2|1|3069146-3069252|CRISPRCasFinder
GAATAGACCGGCGGAGCGCCAGCCGG	ACGGCCATAGCGCGGATCATCGGGCGACATCACCGGCCCCTGCGGCGGGGCGGCG
GAATAGACCGGCGGAGGGCCAGCCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049699.1\|WP_166343853.1\|3060609_3061212_+\|pyridoxamine-5'-phosphate-oxidase-family-protein	unknown	unknown	gnl\|CDD\|274926
NZ_CP049699.1\|WP_166353271.1\|3072170_3073196_+\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|226077
NZ_CP049699.1\|WP_166343863.1\|3071685_3072132_-\|rhodanese-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238724
NZ_CP049699.1\|WP_166343871.1\|3079063_3079375_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049699.1\|WP_166343851.1\|3059014_3060439_-\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173803
NZ_CP049699.1\|WP_063981465.1\|3075164_3076007_+\|MoxR-family-ATPase	unknown	unknown	gnl\|CDD\|223786
NZ_CP049699.1\|WP_166343859.1\|3069852_3070635_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236766
NZ_CP049699.1\|WP_014492874.1\|3061384_3061873_-\|bacterioferritin	unknown	unknown	gnl\|CDD\|153099
NZ_CP049699.1\|WP_166343867.1\|3074826_3075072_+\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	unknown	unknown	gnl\|CDD\|225170
NZ_CP049699.1\|WP_028152324.1\|3066909_3067125_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049699.1\|WP_166102219.1\|3067270_3068233_+\|D-2-hydroxyacid-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|240646
NZ_CP049699.1\|WP_166102215.1\|3065023_3066673_-\|energy-dependent-translational-throttle-protein-EttA	unknown	unknown	gnl\|CDD\|236992
NZ_CP049699.1\|WP_071910256.1\|3063408_3063690_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049699.1\|WP_166343855.1\|3063789_3065016_-\|lytic-murein-transglycosylase	unknown	unknown	gnl\|CDD\|274067
NZ_CP049699.1\|WP_166343873.1\|3079554_3080517_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379352
NZ_CP049699.1\|WP_063981473.1\|3062870_3063197_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378701
NZ_CP049699.1\|WP_166343861.1\|3070637_3071489_-\|3-mercaptopyruvate-sulfurtransferase	unknown	unknown	gnl\|CDD\|225450
NZ_CP049699.1\|WP_166343865.1\|3073527_3074703_-\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|226346
NZ_CP049699.1\|WP_063981474.1\|3062004_3062277_-\|bacterioferritin	unknown	unknown	gnl\|CDD\|381078
NZ_CP049699.1\|WP_166343869.1\|3076073_3078245_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP049699.1\|WP_166343853.1\|3060609_3061212_+\|pyridoxamine-5'-phosphate-oxidase-family-protein	gnl\|CDD\|274926	TIGR04025, hypothetical_protein, PPOX class probable FMN-dependent enzyme, DR_2398 family. Members of the PPOX family (see pfam01243) may contain either FMN or F420 as cofactor. This subfamily consists of proteins mostly from species that lack the capability to synthesize F420, and therefore most likely all bind FMN.	2.32019e-96
NZ_CP049699.1\|WP_166353271.1\|3072170_3073196_+\|IS110-family-transposase	gnl\|CDD\|226077	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.79517e-48
NZ_CP049699.1\|WP_166343863.1\|3071685_3072132_-\|rhodanese-like-domain-containing-protein	gnl\|CDD\|238724	cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.	7.13891e-54
NZ_CP049699.1\|WP_166343851.1\|3059014_3060439_-\|S8-family-serine-peptidase	gnl\|CDD\|173803	cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	6.6811e-63
NZ_CP049699.1\|WP_063981465.1\|3075164_3076007_+\|MoxR-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	2.25403e-46
NZ_CP049699.1\|WP_166343859.1\|3069852_3070635_+\|hypothetical-protein	gnl\|CDD\|236766	PRK10811, rne, ribonuclease E; Reviewed.	1.67441e-06
NZ_CP049699.1\|WP_014492874.1\|3061384_3061873_-\|bacterioferritin	gnl\|CDD\|153099	cd00907, Bacterioferritin, Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) bestowing ferroxidase activity.	2.25622e-75
NZ_CP049699.1\|WP_166343867.1\|3074826_3075072_+\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	gnl\|CDD\|225170	COG2261, COG2261, Predicted membrane protein [Function unknown].	9.23263e-10
NZ_CP049699.1\|WP_166102219.1\|3067270_3068233_+\|D-2-hydroxyacid-dehydrogenase-family-protein	gnl\|CDD\|240646	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases. Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric.	3.49911e-168
NZ_CP049699.1\|WP_166102215.1\|3065023_3066673_-\|energy-dependent-translational-throttle-protein-EttA	gnl\|CDD\|236992	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed.	0
NZ_CP049699.1\|WP_166343855.1\|3063789_3065016_-\|lytic-murein-transglycosylase	gnl\|CDD\|274067	TIGR02283, Membrane-bound_lytic_murein_transglycosylase_B, lytic murein transglycosylase. Members of this family are closely related to the MltB family lytic murein transglycosylases described by TIGR02282 and are likewise all proteobacterial, although that family and this one form clearly distinct clades. Several species have one member of each family. Many members of this family (unlike the MltB family) contain an additional C-terminal domain, a putative peptidoglycan binding domain (pfam01471), not included in region described by this model. Many sequences appear to contain N-terminal lipoprotein attachment sites, as does E. coli MltB in TIGR02282. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	1.42487e-143
NZ_CP049699.1\|WP_166343873.1\|3079554_3080517_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379352	pfam13730, HTH_36, Helix-turn-helix domain.	9.52528e-06
NZ_CP049699.1\|WP_063981473.1\|3062870_3063197_+\|hypothetical-protein	gnl\|CDD\|378701	pfam11737, DUF3300, Protein of unknown function (DUF3300). This hypothetical bacterial gene product has a long hydrophobic segment and is thus likely to be a membrane protein.	9.75436e-05
NZ_CP049699.1\|WP_166343861.1\|3070637_3071489_-\|3-mercaptopyruvate-sulfurtransferase	gnl\|CDD\|225450	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism].	2.43339e-109
NZ_CP049699.1\|WP_166343865.1\|3073527_3074703_-\|VWA-domain-containing-protein	gnl\|CDD\|226346	COG3825, COG3825, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP049699.1\|WP_063981474.1\|3062004_3062277_-\|bacterioferritin	gnl\|CDD\|381078	cd19945, Fer2_BFD, bacterioferritin-associated ferredoxin (BFD) [2Fe-2S]-binding domain. This family includes Escherichia coli and Pseudomonas aeruginosa bacterioferritin-associated ferredoxin BFD which binds an [2Fe-2S] cluster and appears to interact with bacterioferritin (E. coli BFR/YheA and P. aeruginosa BfrB), a dynamic regulator of intracellular iron levels. It has been suggested that BFD and bacterioferritin form an electron transfer complex which may participate in the iron storage or iron immobilization functions of bacterioferritin. For Pseudomonas aeruginosa, it has been shown that mobilization of Fe3+ stored in BfrB requires interaction with BFD, which transfers electrons to reduce Fe3+ in the internal cavity of BfrB for subsequent release of Fe2+. The stability of BFD may be aided by an anion-binding site found within this domain. In addition to BFD, the BFD-like [2Fe-2S]-binding domain is found in a variety of proteins such as the large subunit of NADH-dependent nitrite reductase and the Cu+ chaperone CopZ. It comprises a helix-turn-helix fold, and binds an [2Fe-2S] cluster via 4 highly-conserved Cys residues, found in loops between the alpha-helices. For the class of proteins having a BFD-like [2Fe-2S]-binding domain, the Cys residues are organized in a unique C-X2-C-X31-35-C-X2-9-C-arrangement. [2Fe-2S] clusters are sulfide-linked diiron centers, a primary role for which is electron transport.	1.08211e-05

>NZ_CP049699.1|WP_166102219.1|3067270_3068233_+|D-2-hydroxyacid-dehydrogenase-family-protein
MTRLRCAILDDYFNLALDVADWQKLSDRVDVTVFSHPFASEQAAASALADFEIICAMRERTAFPKSLFASLPKLKLLLTSGMRNASIDMEAAKAQGVAIGGTQYSRDPTAPLTMGLILELTRGIGRENARMHAGEPWQTFAGVEIEGLTLGVVGLGKLGSKMASIAKAFGMNVIAWSPNLTPEKCAAAGVGYATKEELFAKADIVTIHVVLSDRSRGLVGAADLARMKPTAFLVNTARGPIVDEQALLEALQQRKIAGAGIDVFSVEPLPVDHPFRKLDNLVLTPHLGYATEDGLRIHYGQMVEAIDAFTGGRELPRKLA
>NZ_CP049699.1|WP_028152324.1|3066909_3067125_+|hypothetical-protein
MALIETNSIAVPARAGSASGLVTEIKGFWKRFFATAFNPYRPELHYMRGPGPAWRAKHGMDTPFRLKPRDL
>NZ_CP049699.1|WP_166102215.1|3065023_3066673_-|energy-dependent-translational-throttle-protein-EttA
MARQFIYFMQGLTKSYPTRKVLDNIHLSFYPDAKIGVLGVNGSGKSTLLKIMAGLDKEYNGEAWVAQGARVGYLEQEPHLDPALSARENVMLGVAKQKAILDRYNELAMNYSEETADEMTKLQDEIEAQGLWDLDSKVDQAMDALRCPPDDADVTKLSGGERRRVALCKLLLDQPELLLLDEPTNHLDAESVSWLEGHLRNYPGAILIVTHDRYFLDNVTSWILELDRGKGIPYEGNYSSWLVQKQKRLEQEGREDAAHQKTIAREQEWVASSPKARQAKSKARYQRYEDLLKQASEKQTQTAQIIIPVAERLGANVVDFETLSKGYGDRLLIDDLTFKLPPGGIVGVIGANGAGKTTLFKMITKQETPDKGTITVGETVHLGYVDQSRDALDGNKNVWEEISGGNELILLGKKEVNSRGYCSSFNFKGADQQKKVGALSGGERNRVHLAKMLKSGANVLLLDEPTNDLDVDTLRALEEALEDFAGCAVIISHDRWFLDRIATHILAFEGESHVEWFEGNFQDYEKDKMRRLGQDSIIPHRVKYKKLTR
>NZ_CP049699.1|WP_166343855.1|3063789_3065016_-|lytic-murein-transglycosylase
MMRRALIAAVIAIICGLSPARAADAAFTQFIASLWPEAQAAGVSRATFDEQTRGLEPDYKLPDLILPGRPATGAPSQAEFVQVPADYVKEASIARLAGEGQRLLQKYRPALSEIEKKSGVPATVMLAIWGRETDYGRYTLPYDLVRVLATQAYVGRRKDTYRNEFILSLKILGEGVVTRKDMRSSWAGATGLTQFLPSEYYKHGVDFDGDGRIDIWHSVPDALASAAQQLVNKGWQSGVRWAYEVQAPAKVDCTSGVPEVTKPIGQWLREGFVPVRGEKLSAAEQAQPASLLQPEGIYGPSFLTTKNYFVIKEYNFSDLYVLFVGHLADRMTSPLPFATQWAASKQLRTKDVETMQRGLTRVGLYKDKIDGKAGMQTRAALGAYQKSAGLKVDCWPSEEVLRSIQAAR
>NZ_CP049699.1|WP_071910256.1|3063408_3063690_+|hypothetical-protein
MKKTFVAALTVATIAGSLVTATPSAKAHDGVGAGIAAGLIGGAIVGGAIASSRPAYGGPVYIAEPPPPAPCYWQRQRYWDGYGWVVRPVRVCY
>NZ_CP049699.1|WP_063981473.1|3062870_3063197_+|hypothetical-protein
MKKFLLTVAAVATLALTAGTPAHAQRGVAAGVAAGIIGGAIVGGALASPYYYGPGPGYSYGPGYYPPRYYAPGPGYVADDYYGDGCVWQRQRFWDGYAWRTRRVRVCG
>NZ_CP049699.1|WP_063981474.1|3062004_3062277_-|bacterioferritin
MIVCSCNVLSDDDIRAAVAESDDAVRHAKQVYGCLGCSAECGRCARTIKTIIDETLGPCAKSCCSGCPHSHTVAANDETAELPRFALAAC
>NZ_CP049699.1|WP_014492874.1|3061384_3061873_-|bacterioferritin
MQGDAKVIDYLNKALRHELTAINQYWLHYRFLDNWGLRDMAKVWRKESIEEMEHADKLTERILFFDGFPNMQVLDPLRIGQNVKEIIECDLAAEMSARALYQEAAGYCNGAKDYVTRDLFEKLMSDEEHHIDFLETQLDLIGRIGLELYTQKHVGGLEGEGH
>NZ_CP049699.1|WP_166343853.1|3060609_3061212_+|pyridoxamine-5'-phosphate-oxidase-family-protein
MTDLCAEDLATIYAKPSPRVIAKARPAIDAHAKKFIEMSPFCVLATSGVDGSVDASPRGGGVGFVHVAGPNQVLMPDRAGNNRIDSFRNVVEGSGFVHLLFFVPGIDETLRVGGRGTLSVDPELLASMVEFGKPPRAVLNVAVSEVYFHCGKALMRSKLWSPEKVQRSVMPSIGQVIHDQTGLGEPESQEIVEERYKTQL
>NZ_CP049699.1|WP_166343851.1|3059014_3060439_-|S8-family-serine-peptidase
MAPTQAMRVAGDRPRRRKHVPGQLIVRLKPAAARQIAAASLQAPTSRALMAAMPDDVRGPIDFLRDNFGLQSMKPLFVVGDDEAPAQPQAMALAAVHRSIARSATAPPREALAGFQIVQLKDGKVNAGVLKRLRASRAVDLVEPVPNRWLSAAADPMKIRQWGLRAIRWFDRPRPGAGRVHVAVLDSGVDAEHPDLVDAIEEYRHDGNGPRDFLGHGTHVSGTIAAVVNNSVGIAGLANCRLHCWKVFDDPKRAGDDENFNFDFYSKALAAALDSNIKVINLSIGGEDHSKTEATAFAELIEAGVVISTAMGNEFEDGNPKEYPAGYADTIGVGAVDESHRRASFSNTGKHIKLVAPGVNILSTVPRVKASFADHTSYDSWPGTSMATPHVTGAAALVYINKTKSRTAGLAVASRLIATATKLPAMRGKDFTPEYGAGLLDVAAALGRVKPARKSGRKTAKKTTKAKPARKGRK
>NZ_CP049699.1|WP_166343859.1|3069852_3070635_+|hypothetical-protein
MLPGFRFLFAAILLSTSILVFGLGAAALLRATHEQYVSNPSWRNGPQEKVFAQGPEPAQPVLAALRAEPEAAAEPTPSLRDRVPTIGLPANEPEQVAALTTEPDVPPQVPEAAPPAAEPVQAEATTEAIAPAPADTLTPADTTASIPEPTPAVTASEPAPADPGAALASPVPDIAPAKVAALNDPAAPALKDAPAKAKGDTKGDAKADSSAPDSKAAKRQAKAKKRHRMVQRPPPQQLRQSYDPFGQQQMLATTATRTRQ
>NZ_CP049699.1|WP_166343861.1|3070637_3071489_-|3-mercaptopyruvate-sulfurtransferase
MPTDPLVSTEWLAAHIDDANVKILDASFKLPGVLPLPKDDYLAAHLPGAVFFDVDAVSDHSNPLPHMYPSAEQFGRDAGQLGISNADTVVLYDAGGWVAAPRAWWMFLAFGHSNVRILNGGLKKWRAEGRPVESGEVKPKPATFRASYDSKRVRSMQQLIANVESRAEQVIDARAADRFEGRAPEPRAGIRSGHIPGARNVPYNQLFDAATGEMKPLEDLRAAFANAGVRLDAPIVTSCGSGVSAGVLTLALYRLGITDTALYDGSWSEWGQAGGPPVATGPA
>NZ_CP049699.1|WP_166343863.1|3071685_3072132_-|rhodanese-like-domain-containing-protein
MAHRCRRGASTPSQTITRGIKALIDEANAEIETLNAKEAIEISKNGDVVIVDIRDPREIERDGRIPGAFACTRGMLEFWIDPQSPYAKPIFQEDKKFVFHCAGGMRSALAAKTAKDMGLKPVAHIAGGYAAWRDAGGPVEQWEPKKKG
>NZ_CP049699.1|WP_166353271.1|3072170_3073196_+|IS110-family-transposase
MNEVSTIGLDLAKHVFQAHGADAGGVVVFRKQLRRDNVLAFFAQQPACLVAMEACASAHHWAREIGKLGHAVRLIPPSYVKPFVKRQKNDMADAEAICEAAQRPTMRFAAVKSEDQQASAVVFRARDLLVRQRTQIINALRGHLAEYGLVVAKGASNVAALVEHAQASGSSVPTAAQPALDILVKMLAVLEEQIKQLDIEIARRAREEEVARRLMTVPGIGPITATALMALAPEPENFKRGRDFAAWLGLTPLQRSTGGRQKLGQISKMGERTLRRLLIIGASAVVKLARRRGQSQGAWLERMLARKPPMLVAVALANKMARTVWALMVNGGVYKAPVAAA
>NZ_CP049699.1|WP_166343865.1|3073527_3074703_-|VWA-domain-containing-protein
MFLQFFTSLRDAQVPVTLREYLTLMEALDADLSDYSVENFYYLSRTSLVKDERNLDKFDRVFGTVFKGLESLLDAMEKAEIPEEWLKKLAEKYLSEEEKKQIEAMGWDKLMETLKKRLEEQKGRHQGGSKWIGTAGTSPFGAHGYNPEGVRIGQEKNRNNRAVKVWDKREFKDLDGNVELGIRNIKVALRRLRKFARTGAPDELDLDTTIRETANHGYLDVHMRPERRNAVKLLVFFDIGGSMDSHIEQVEELFSAAKSEFKHMEYFYFHNCLYEGVWKQNKRRFTDRTPTWDVLYKYPHDYKVVFVGDASMSPYEIMVPGGSVEHVNEEPGSVWLDRIIRTYPHTVWLNPVQQKHWDYSESTTIIKRIFANRMYPITIEGLEGAMKELTH
>NZ_CP049699.1|WP_166343867.1|3074826_3075072_+|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein
MGILAALIIGASAGWLAGKIVHGAGFGLIGNMVVGIIGALVASWVLPQLHIALATGTIGAIVDATIGAVIVLVILSLIKRV
>NZ_CP049699.1|WP_063981465.1|3075164_3076007_+|MoxR-family-ATPase
MKFTGTKDYVATDDLKVAVNASIVLERPLLIKGEPGTGKTVLAEEVAKALNAPLLTWHIKSTTKAQQGLYEYDAVSRLRDSQLGDARVSDIRNYIKRGKLWDAFTAEQRPVLLIDEIDKADIEFPNDLLLELDRMEFHVYETGETIKAKQRPIMMITSNNEKELPDAFLRRCFFHYIKFPDADTMGRIVDVHFPGIKKRLVEEALRIFFEVREVPGLKKKPSTSELLDWLKLLLNEDMSVEQLRERDPRKLIPPLHGALLKNEQDVHLFERLAFLSRREV
>NZ_CP049699.1|WP_166343869.1|3076073_3078245_-|hypothetical-protein
MRFISILCLLILTISPCFAQSPRASAEVTTLISQGPLLAVLDHDNSSALSLVTLFRKIHAAQKLPQPAVADGPTRASDLSQFSGTYAQFAAVMSADITRITAGLGIDWEKEILKTYDPKSAKTDAGKTLRLNGNVARVFNERWLGSSDGLFLLSGVVNRMDRRDFDSAHCGELRFIYRLGYEVRMNGKTYASRMPFTVNMVFSYADDGRNCQDVASLWRVAGIDTDDPAMVAQRLLQGPLDFSRLIFKQMEINAEVVRFPSDLENMENRKFAGQAIYWMRIFALRGGKFQPTRLENTPDVQAILKDPAKQKQLQDYLAGHIAEIDNGTFRIPESLEADIALSFSTAGSARMANRPFDLAIGSEQAARIVAAAGVPGRSQKFVQSGAGLLERLNTSSCMGCHQSSSTAGFHFLGVDRFDFGRDADAIRNALDGNELQLPFSPHVYAELVRRKDYVERVSLGQAPNSFRPHPSAPPAAWESGNPAYVVAGDNMPCPLNADLAQAAKWSCNATRNLTCQALVTNAATSSNLGQCVPAAQNVAAGLSCRSNVIEDSTAKTAANNPLGFNLRAFSDRVSKEELVYKLPEGKLSGYGYNCRPTKIGVPLGRVTRPCKPEEASLAVIRPGSVPEEICAIVGGKGFEQMAKGYFDSGIFAAGVGRGLLNTCSPSRFCREDYICQQMPDFVTSARFNVSAPALNNLRSRKIGFCTPTYFVYQLRLDGHPNPR
>NZ_CP049699.1|WP_166343871.1|3079063_3079375_+|hypothetical-protein
MREKEHQAEREDSAPDELREMMTEREVLDTTRLSRSALHRLEKKDGQLRACVVYIAPNTKRFWRDLVIRWQKVLAEKDHRNPNRGRGPGRRPRAVGEAVKAEA
>NZ_CP049699.1|WP_166343873.1|3079554_3080517_+|helix-turn-helix-domain-containing-protein
MADTKTLNASRAAFMRRASAPDINALALKLAYLIAFKHMDTETGKTTLRSQETLARDLNVTVRTVQRLLDILIPLGLVIVPGHGPGRAATYWIDPDKATPVSPINTTPVSPIGGRKGDTRRPNTRHLTTKYTTPVSPPLKKNLQEDSPRKEDIYPAPGFASPDIGEDTTPKIENEKPCDDDNVTRFSDADLAAAFAEFWSACLLKVAPVKTRRAHRIAVVKRGVAPARLTAAMKRHAAIQRDAAERAMRAGKEPPYIKHPANWIIDGCYDDEIASTAPPTIDEHGNVIEPPASSPPSTWDEIEANALAKDAAHGGKWGHE

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Crispr_ID: NZ_CP049699_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049699_4

9786087-9786171

Orphan

Consensus_repeat	Method
TTGTTGGCGATGTTGGCGCTGCCGGCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP049699_4

>merge|NZ_CP049699|4|9786087-9786171|CRISPRCasFinder
CTGTTCGAGATATTGATGCTGCCAGCGCTGTTCGCGTTGCGGAAGTTCGCCGTGCCGCTGTTGGCGATGCCGGTGATGCCGGTCA

>NZ_CP049699|4|3|9786087-9786171|CRISPRCasFinder
CTGTTCGAGATATTGATGCTGCCAGCGC	TGTTCGCGTTGCGGAAGTTCGCCGTGCCG
CTGTTGGCGATGCCGGTGATGCCGGTCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049699.1\|WP_166352311.1\|9781564_9782677_+\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP049699.1\|WP_038932055.1\|9780377_9781559_+\|aminotransferase	unknown	unknown	gnl\|CDD\|181580
NZ_CP049699.1\|WP_063983967.1\|9797128_9798334_-\|beta-ketoacyl-ACP-synthase	unknown	unknown	gnl\|CDD\|235819
NZ_CP049699.1\|WP_007592476.1\|9798811_9799099_-\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|180597
NZ_CP049699.1\|WP_063983965.1\|9799309_9799651_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049699.1\|WP_166353263.1\|9792212_9793514_+\|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NZ_CP049699.1\|WP_166352315.1\|9790031_9791891_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|226233
NZ_CP049699.1\|WP_166352310.1\|9780043_9780370_+\|rhodanese-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238089
NZ_CP049699.1\|WP_014496126.1\|9774667_9775498_+\|flagellar-motor-protein-MotB	unknown	unknown	gnl\|CDD\|224279
NZ_CP049699.1\|WP_028146684.1\|9777810_9779739_+\|potassium-transporter-Kup	unknown	unknown	gnl\|CDD\|225700
NZ_CP049699.1\|WP_063983964.1\|9799989_9800619_+\|chromosome-partitioning-protein-ParB	unknown	unknown	gnl\|CDD\|226768
NZ_CP049699.1\|WP_028146686.1\|9773869_9774643_+\|flagellar-motor-protein-PomA	unknown	unknown	gnl\|CDD\|181604
NZ_CP049699.1\|WP_166352316.1\|9794862_9795795_-\|lipid-A-biosynthesis-lauroyl-acyltransferase	unknown	unknown	gnl\|CDD\|235827
NZ_CP049699.1\|WP_166352308.1\|9775771_9777670_+\|potassium-transporter-Kup	unknown	unknown	gnl\|CDD\|225700
NZ_CP049699.1\|WP_166352306.1\|9772818_9773643_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|212492
NZ_CP049699.1\|WP_063983966.1\|9798330_9798801_-\|beta-hydroxyacyl-ACP-dehydratase	unknown	unknown	gnl\|CDD\|223835
NZ_CP049699.1\|WP_166352319.1\|9800634_9800790_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|381719
NZ_CP049699.1\|WP_166352304.1\|9771687_9772407_+\|RraA-family-protein	unknown	unknown	gnl\|CDD\|319245
NZ_CP049699.1\|WP_085404826.1\|9772424_9772718_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049699.1\|WP_166352318.1\|9795803_9797081_-\|beta-ketoacyl-ACP-synthase	unknown	unknown	gnl\|CDD\|235817

Protein	Function_ID	Function_description	E-value
NZ_CP049699.1\|WP_166352311.1\|9781564_9782677_+\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	7.09635e-170
NZ_CP049699.1\|WP_038932055.1\|9780377_9781559_+\|aminotransferase	gnl\|CDD\|181580	PRK08912, PRK08912, aminotransferase.	0
NZ_CP049699.1\|WP_063983967.1\|9797128_9798334_-\|beta-ketoacyl-ACP-synthase	gnl\|CDD\|235819	PRK06519, PRK06519, beta-ketoacyl-ACP synthase.	0
NZ_CP049699.1\|WP_007592476.1\|9798811_9799099_-\|acyl-carrier-protein	gnl\|CDD\|180597	PRK06508, PRK06508, acyl carrier protein; Provisional.	2.29549e-57
NZ_CP049699.1\|WP_166353263.1\|9792212_9793514_+\|group-II-intron-reverse-transcriptase/maturase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	1.45525e-135
NZ_CP049699.1\|WP_166352315.1\|9790031_9791891_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|226233	COG3710, CadC, DNA-binding winged-HTH domains [Transcription].	6.79586e-17
NZ_CP049699.1\|WP_166352310.1\|9780043_9780370_+\|rhodanese-like-domain-containing-protein	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	1.35177e-17
NZ_CP049699.1\|WP_014496126.1\|9774667_9775498_+\|flagellar-motor-protein-MotB	gnl\|CDD\|224279	COG1360, MotB, Flagellar motor protein [Cell motility and secretion].	3.50406e-41
NZ_CP049699.1\|WP_028146684.1\|9777810_9779739_+\|potassium-transporter-Kup	gnl\|CDD\|225700	COG3158, Kup, K+ transporter [Inorganic ion transport and metabolism].	0
NZ_CP049699.1\|WP_063983964.1\|9799989_9800619_+\|chromosome-partitioning-protein-ParB	gnl\|CDD\|226768	COG4318, COG4318, Uncharacterized protein conserved in bacteria [Function unknown].	6.98807e-91
NZ_CP049699.1\|WP_028146686.1\|9773869_9774643_+\|flagellar-motor-protein-PomA	gnl\|CDD\|181604	PRK08990, PRK08990, flagellar motor protein PomA; Reviewed.	4.65719e-70
NZ_CP049699.1\|WP_166352316.1\|9794862_9795795_-\|lipid-A-biosynthesis-lauroyl-acyltransferase	gnl\|CDD\|235827	PRK06553, PRK06553, lipid A biosynthesis lauroyl acyltransferase; Provisional.	0
NZ_CP049699.1\|WP_166352308.1\|9775771_9777670_+\|potassium-transporter-Kup	gnl\|CDD\|225700	COG3158, Kup, K+ transporter [Inorganic ion transport and metabolism].	0
NZ_CP049699.1\|WP_166352306.1\|9772818_9773643_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|212492	cd05327, retinol-DH_like_SDR_c_like, retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) OxidoReductase (LPOR) and related proteins, classical (c) SDRs. Classical SDR subgroup containing retinol-DHs, LPORs, and related proteins. Retinol is processed by a medium chain alcohol dehydrogenase followed by retinol-DHs. Pchlide reductases act in chlorophyll biosynthesis. There are distinct enzymes that catalyze Pchlide reduction in light or dark conditions. Light-dependent reduction is via an NADP-dependent SDR, LPOR. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. This subgroup includes the human proteins: retinol dehydrogenase -12, -13 ,and -14, dehydrogenase/reductase SDR family member (DHRS)-12 , -13 and -X (a DHRS on chromosome X), and WWOX (WW domain-containing oxidoreductase), as well as a Neurospora crassa SDR encoded by the blue light inducible bli-4 gene. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	2.79584e-77
NZ_CP049699.1\|WP_063983966.1\|9798330_9798801_-\|beta-hydroxyacyl-ACP-dehydratase	gnl\|CDD\|223835	COG0764, FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism].	2.93972e-30
NZ_CP049699.1\|WP_166352319.1\|9800634_9800790_-\|hypothetical-protein	gnl\|CDD\|381719	cd19345, Wnt_Wnt2, Wnt domain found in protein Wnt-2 and similar proteins. Wnt-2, also called Int-1-like protein 1 (INT1L1), or Int-1-related protein (IRP), functions in the canonical Wnt signaling pathway that results in activation of transcription factors of the TCF/LEF family. It plays an important role in embryonic lung development. Wnt genes have been identified in vertebrates and invertebrates, but not in plants, unicellular eukaryotes, or prokaryotes. In humans, 19 WNT proteins are known. Because of their insolubility little is known about Wnt protein structure, but all have 23 or 24 Cys residues whose spacing is highly conserved. Signal transduction by Wnt proteins (including the Wnt/beta-catenin, the Wnt/Ca++, and the Wnt/polarity pathway) is mediated by receptors of the Frizzled and LDL-receptor-related protein (LRP) families. The Wnt signaling mediated by Wnt proteins that orchestrate and influence a myriad of cellular processes, such as cell proliferation, differentiation, tumorigenesis, apoptosis, and participation in immune defense during microbe infection.	0.009567
NZ_CP049699.1\|WP_166352304.1\|9771687_9772407_+\|RraA-family-protein	gnl\|CDD\|319245	cd16841, RraA_family, ribonuclease activity regulator RraA family. RraA protein family is named after the regulator of ribonuclease activity A (RraA), a protein that binds to RNase E and inhibits RNase E endonucleolytic cleavages. Members also include proteins with other functions, like a 4-hydroxy-4-methyl-2-oxoglutarate/4-carboxy-4-hydroxy-2-oxoadipate (HMG/CHA) aldolase from Pseudomonas putida, which catalyzes the last step of the bacterial protocatechuate 4,5-cleavage pathway and the uncharacterized YER010Cp protein from yeast, an organism lacking RNAse E.	2.59303e-21
NZ_CP049699.1\|WP_166352318.1\|9795803_9797081_-\|beta-ketoacyl-ACP-synthase	gnl\|CDD\|235817	PRK06501, PRK06501, beta-ketoacyl-ACP synthase.	0

>NZ_CP049699.1|WP_166352311.1|9781564_9782677_+|polyamine-ABC-transporter-substrate-binding-protein
MTNVGRSRRCLGFAIAAALTLLSAPAGAEERVVNFYNWSNYMAPDVLEAFTKETGIKVVYDTFDANETLETRLMAGKSGYDVVVPTAYFLQRQIKANIFQKLDKSKLPNLSNAWPVVTERLGIYDPGNVYAANYMWGTTGVGYNVAKVKQILGPDAKIDSWDIVFKPENLAKFKDCGVHMLDSADDIFPAALNYLGLDPNSTKQADLEKAADVVAKVRPSVRKFHSSEYLSALATGEICFVVGWSGDIMQARARAAEAKSGIEIGYAIPKEGAQMFFDNLAIPADAKNVKEAYELINYLYRPDVAAKNSDFLSYANGNLASQKLVDPKILNDKNIYPDEATLAKLFVITAREPATQRIINRLWTKVKTGR
>NZ_CP049699.1|WP_038932055.1|9780377_9781559_+|aminotransferase
MTTKSSSLNKVFADLPVTIFEAMSQAARDNNAINLGQGFPDDPGPEDIRRAAADASLNGYNQYPSMMGLPELRQAIATHYGHWHGLKLDPMSEVMVTSGGTEALTSAILAVVQPGDEVVCFQPVYDSYLPIIRQAGGIPRLVRLEPPHWRLNEDMLKSVFNSKTKAVLFNNPLNPSAVVYPREDLELLARYCQEFDVIAICDEVWEHVTFDEHKHIPLITIPGMRDRTIKVGSAGKIFSLTGWKIGFVCAAPPLLRVAAKVHQFLTFTTAPNLQAAVAYGLGKSDDYFLSMRKDLTRSRDRLTRGLESLGFPVLKSQGTYFLTVDLSPLGLNESDTEFCWRIVKDYKVAAIPVSAFYEQDAVTSVVRFCFAKKDETLDTALERLSDAVRGRKR
>NZ_CP049699.1|WP_166352310.1|9780043_9780370_+|rhodanese-like-domain-containing-protein
MANQVQDLTPDEVSKGVAEGRYLLVDVREPNEVDAEAYPYGVVVPLSTFDPKAIPDPQGKEVVFACRSGKRSVTASLAAQAAGLPYDKHLAGGMLGWKASGLPSKVGG
>NZ_CP049699.1|WP_028146684.1|9777810_9779739_+|potassium-transporter-Kup
MTSDVAISAPETAAANGHGEAHTTARFGALTLGSIGVVYGDIGTSPLYAFREAVMAASGAEGVPTPAAVLGVLSLILWALIVVVTLKYVVILLRADNNGEGGTLALMALAQRAVGTGGATIVLLGIISGALFYGDAVITPALSVLSAIEGMKDVTLHFEPYIVPLTVIILVGLFAVQSRGTARVAAFFGPVMCVWFAVIAIAAIHPIIEQPQVLFALNPLYAVSFMFHHGIIGFVTLGAVFLAVTGAEALYADLGHFGKRPIQTAWLFIVLPSLALNYLGQGALVLGDPGAIVSPFFQLFPQGFFRGCMVVLATAATVIASQAVITGAYSLTRQAIQLGLLPRFEIRHTSEAHSGQIFIPRINQLLLVAVVLLVLLFRSSSALASAYGISVTGTMVVTAMMGFVVIWKVWKWSPFAAAALIVPFLFLDLTFLAANLLKVFEGGWVPLALGALMIILMYTWRRGSRLLFEKSRKLEFPLADLVAMLEKRPPQRVPGTAVFLTSDPLSAPTALMHSLKHYKVLHEKNVILTIETAQTPRIDPAERVRLEQISPTFSKVTLKFGFMESPNVPKALAIARKLGWQFDIMSTSFFLSRRALKPAAHSGMPRWQDRLFISLSRSANDATDYFQIPSGRVVEVGTQVTI
>NZ_CP049699.1|WP_166352308.1|9775771_9777670_+|potassium-transporter-Kup
MTASITSTDAQDGPVTSGFWGLTLGSIGVVFGDIGTSPLYAFHEAVKAAAHGEPVSRVMVLGVLSLILWALFIVVTAKYVLLLLRADNNGEGGTLSLMALGQRALGRRSWFLLALGVVGASMFIGDSMITPAISVLSAVEGLKLVTPAFEHYVVPLTVIILVLLFAVQSKGTALVASAFGPVMVVWFTVLAVMGAVHIADDPSVLAAINPYYALQFLLSHGTIGLVTLGAVFLAVTGGEALYADLGHFGRKPIQSAWMFFVLPALLINYFGQGALVLSDPSAIEHSFYRMVPESLVLPLVGLATAATVIASQAVITGAYSLVYQAVQLGLLPRFEVRYTSETHAGQIYLPRVNRLLLIGVMLLVLLFHTPSNLASAYGIAVSTTMVADGVMGFVVIWKLWNWRAATAAAVIVPFVVVDISFFSANLLKLLEGAWVPLLFGAVMAGTIWTWRKGTGILLQKTRRIEVPLDDLIRSLEKRPPHIVKGTAVFLTSDPAFVPTALLHNLKHNKVLHEHNVVLTIETAHTPRVELSERFRMEKISDKFSKVRLRFGYMEQPNVPKALAIARKQGWQFDIMSTSFFVSRRSLKASAQSGMPLWQDHLFIALSRSANDATDYFQIPTGRVVEVGTQVTI
>NZ_CP049699.1|WP_014496126.1|9774667_9775498_+|flagellar-motor-protein-MotB
MAKKKRGDAHGGGHGWFVTFADLMGLMMSFFVMLVAFSTQDANKLKIVAGSMRDAFGVQSEARYAGIVESDGLPTRPRLKNVDHIQPEDASNTPTPDQEDRDRTSGAKIKVDRNFALAAASLRQALQDMPELTEMSKHIMFEETKQGLNLEIVDQDGRSMFADGSKVPYDRTRRLIEKLAIPLKATPLRVSIAGHTAAGFVPTRSDYGAFDLSADRANAVRQILEREGLPPSHIFAVAGKADTQPLFPDDPSLAANRRVTITLMREDPPLPPNLKP
>NZ_CP049699.1|WP_028146686.1|9773869_9774643_+|flagellar-motor-protein-PomA
MDIMTSVGLIAGIIVITAMIFMGGDLHMFISEHAMIIIFGGSVSATMIRFPLSALLHGLPLGAKFAFTMSRLSAHDLVDELARIAEIARKQGPVGLEKVETDEPFLAKGIRYVADGYDLDFIRDNLERDRDNFLMHLDEGSKIYRAIGDCAPAFGMIGTLIGMVQMFANMTDPSKLGPFMATALLATLYGALVANLFCLPIADKLHGKLLDEETNRTLIIDGILMIRDSKSPTLVREMLLAYLPEKHRHAEGEPVPA
>NZ_CP049699.1|WP_166352306.1|9772818_9773643_+|SDR-family-NAD(P)-dependent-oxidoreductase
MKMTGKTVLITGSTDGVGRHVARRLAEAGARVLIHGRDAVRAKALIDQIVQAGYAAPTFYQADLSSMSGTRELAAAVIRDHQRLDVFVSNAGIGSQNDGPQRQVSPDGYELRFAVNYLSGFLLAHLLLPLLTSAAPSRVVNVASLGQHPIDFDDVMISKGYSGSRAYAQSKLAQIMFTIDFAEELKRMGITVNALHPATYMNTTMVRAGGITPISTVEQGGAAILRLVEGDDVAGKSGLFFNGMNETRANPQAYDAGARRRLRALSLELTGLSS
>NZ_CP049699.1|WP_085404826.1|9772424_9772718_-|hypothetical-protein
MLTLFGLLTALPAVLALHLLEPGLVLPAFSVLLFVEAGFAVIAARLIHVPDNAENITLWDLAGGFTLIGCAAAVFGEPDQAALFLTEQGGPRPATRP
>NZ_CP049699.1|WP_166352304.1|9771687_9772407_+|RraA-family-protein
MTETATGPLPASVLEALGHYDTPTICNAMEIVAPERRLIGYTTKQLVCPFPDLPPIVGYARTVAIRSVLKSSLPAEEQSKRRIEYYEYVGTGHGPRISVIQDIDGPDVGYGAFWGEVQSNVHKALGCLGVITDGSIRDIPQWAPGFQALAGSIGPSHAWVHAESFGGEVRVAGMTVKSDDLIHADQHGAIVIPLDIAAKLPEAAELCGRRETPILEIARSPDFSLEKLKAALKRSAEIH
>NZ_CP049699.1|WP_166352315.1|9790031_9791891_+|tetratricopeptide-repeat-protein
MLRFAGFELDQQRAELRSADGVAIKLRPKTFEMLRLFATSGGRVLSKQELMEAVWPNVHVGEDSLFQCIRELRTALGDERRQLIKLASGGGYLLAAEVVAAPEATAQVEASRPAPTAEVATELPVEVAAVSVKSQRTMFGLSRQAMVAAVAGLCVIVVGLAVAAPVLKPDLLFRRAPPRLAVMPIVDASNDSRGAVLAAEVTGRLTDGFAKIQNISVVAPRLAAAAGGESTAAPAALSDYELRGELQFADQSWTLRTRIIKAGSGEVQAVAAMAISADETDAQPVQSRLAAGVGHVLARRLNEILEPSTSSARRTASAGGDRVAVEQALASINQTTRERFGAAQAMLQKALSDDPENLDIAVALASLQMRGIQMVWFSPEEAAAVEARANATLEQALRAKPNSIAVLEATCRFLSATNHFVESLVTCAKALNFDPWNGSALYLIGLGQVYLGRFEDALATFRLADRFDAPPASRWTWLLGAGMTYVLMGRYEEALPWLQRSIAITPGTGRSHFMLAAAYQRSGRFEEARAAIAEGLRLRPGTTRLSVWPPMKNASPVVCPAKAGMFSRRQTCRGRSQSPVVWIAEVMETETLKPIDKVSPGEATSHRAVIKVNALWPRK
>NZ_CP049699.1|WP_166353263.1|9792212_9793514_+|group-II-intron-reverse-transcriptase/maturase
MTKASIDLQDLRRRIYVKAKAEPSWRFWGLYVHVCKMETLRAAYEMAKENDGAPGIDGVTFEAIETQGVEALLEQLRDELIGRTYQPLPARRQEIPKDGGKVRVLSIPTIRDRVVQGALKLILEPVFEADFQPGSYGYRPKRTAHGAIKRVAEAIVQRKTRILDIDLRAYFDNVRHDRLLEKVARRVDDAHILHLLKMMLKASGKKGVPQGGVISPLLSNLYLNEVDRMLERAREVTRNGKYTYIEYARFADDLVVLIDAYKRHDWLIGAVTKRLREEFAKLQVEINDEKSRTVDLERGECFGFLGFEFRYFRGLSGAMRPHYTPKLKKRTALVRALKEVFRRHRSQPVERVINLINPMLRGWVNYFAVGHSSECFSFIKDWVEKKVRRHLAHAQKRKGFGWERWNRRWLYDTLGLFNAYRVRRDGPKVAPAG
>NZ_CP049699.1|WP_166352316.1|9794862_9795795_-|lipid-A-biosynthesis-lauroyl-acyltransferase
MALLPASIKARAREAGKSLGGSLIGAATVGMLRTTRNFDPAKTSDFFSRVVKTIGPRLREHRIGRANLTAAFPEKSPEEIEEILMGVWDNLGRVGAEFAHMDQVWDYDRDHPEKSRIELPQRGIELFDQIRDDGKPALIFAAHLANWELPALAAVAHGLDTAILYRRPNIASADRIIQEMRQVNMGTLIPAGRDAPLRLAQALKDGKHVAMLIDQYLTGGVEVTFFGRKTRANPMLARLLRQVECPIHGVRIIRLPGNRFRGELTEEIKPVRGADGKIDIQGTTQAITSVVEGWVREHPEQWLWLHRRWR
>NZ_CP049699.1|WP_166352318.1|9795803_9797081_-|beta-ketoacyl-ACP-synthase
MTAPRDKLGRPVVVVTGMGIMTSLGNGKADNWAKLVAGESGIRTITRFPVDGLRTTMAGTVDFVSVDPFSSTGLSERMAELVTQEALAQAGIGAKADFPGPLFLAVAPVEVEWPQRRELGRAVGAQDITYDDLLRISGGGKYSAYHHRFMFGSVAAYLAETFGTKGSPISLSTACASGATSIQLGVEAIRRGETDAALCVATDGTVNPEALVRFSLLSALSTQNDPPQAASRPFSKNRDGFVMAEGAGALVLESYEAATARGAKILGVIAGCGELTDSFHRTRSSPDGKPIIGCMNKTLADAGMTPDQIDHINAHGTATPENDKMEFNTTSAVFGELAQKIPVTSNKSMVGHTISAAGAVEAIFSLLTLEHQRIPPTINYDNPDPTILFDVVGNKARDARVTAVMSNSFGFGGQNASLILTREPA
>NZ_CP049699.1|WP_063983967.1|9797128_9798334_-|beta-ketoacyl-ACP-synthase
MTDTASKPGQTEVWITGIGLATSLGEGLDANWAALQDKRINVDEKGFAPCIVHPLMPVTFDSQIPKKGDQRQMEAWQRIGTYAAGLALDSAGIKGNKDILSKIDMVVAAGGGERDLNVDSGVLTAEVKGANAPGFLNERLMSDLRPTLFLAQLSNLLAGNIAIVHGLGGTSRTFMGEEVAGADAARIALARIASGESDIALIGGSHNGERKDLMVLYEFGDFNLKDKFAPVWARKDHPGFALGSAGAFLVLESKAHAEARGAKPFAKLSSVVADLARRKQPGDTAATLEKLWEKLPRREGKGAIISGATGAEPATSEERGFLKGHADFPVRSTGTMFGHAMETQFPLGIALAALSISRGALFPPNDSTGTEIEMQGAPTQIVVVGAGHWRGEGMALVEAVS
>NZ_CP049699.1|WP_063983966.1|9798330_9798801_-|beta-hydroxyacyl-ACP-dehydratase
MQLEYFHMIDRVVDLNVDAKTIVVEALVPKESTIFEGHFPGYPLMPGVLLIESMAQASGWLQLGVLKFERMPILAAVKEAKVRGSVFPGDLMTIEATLSHQGSGYAVTEAKIKVGGKLRANSTLTFTQIPFPNADMRGFMDAVAKRVGFPQQAGSP
>NZ_CP049699.1|WP_007592476.1|9798811_9799099_-|acyl-carrier-protein
MSSTFDQVATIIAETCDIPRDTITPDSHAIDDLGIDSLDFLDIAFAIDKQFGIKLPLEKWTQEVNDGKATTEQYFVLKNLCARIDELVAAKGASA
>NZ_CP049699.1|WP_063983965.1|9799309_9799651_-|hypothetical-protein
MKTQRPISSDDEHRVLQFRPRNASPPPVQRGSGTVQPLRVAPEPLDLSRYEKPRPEPDNFRHRMLANIAALAFTIALTAIGIWLAVSIADLRRTQDCVLMGRRDCAKITTPHI
>NZ_CP049699.1|WP_063983964.1|9799989_9800619_+|chromosome-partitioning-protein-ParB
MTTTNAREPRVHPVPILSLRPTQMTVGMREVKEKRKRWREHGKKKQADLLGNHMIPVVYGPDQRYYVIDHHHLGRALHDEGVKEVLVTVVGDLRMVEREAFWGVMDNKRWVYPYDSKGERRPFRDLPKSVVDLKDDPFRSLAGELRRMGGFAKDTTPFSEFLWADFLRRKLTRKAVDANFDKALEKALSAAKSKDAIYLPGWCGPADDD
>NZ_CP049699.1|WP_166352319.1|9800634_9800790_-|hypothetical-protein
MNVVIRKLNGLWHLVVGSCQIRTPFLATQDRALVVSYARRVYPGAKIFQRD

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Crispr_ID: NZ_CP049699_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049699_3

9785460-9785998

Orphan

Consensus_repeat	Method
TTGTTGGCGATGTTGGCGCTGCCGGCCG	CRISPRCasFinder
TGGCGCTGCCNGCCGNGCT	CRT

8 spacers

The CRISPR arrays of NZ_CP049699_3

>merge|NZ_CP049699|3|9785460-9785998|CRISPRCasFinder,CRT
AGATTGTCGATGGTTGCGCTGCCGGCCGAGCTCGAATCCCGGAAATTGATGGAGCCGGAATTGGTGATGATGGCGTTGCCGGCCGTGCTGCTGTTCAGGAAGTTCAGAAATCCAGGGCTGGCATTCGTGATCGTGGCGCTGCCGGCCGTGCTTGTGTCGTGGAAGTTGATGGTGGAGGAAATGGCGTTGTTGATGATGGCGCTGCCGGCCGTGCTCGAGTCGTAGAAATTCAGATAGGCGTACTGCGCATGCATGTAGTCGCTGGTGTTGTTGATGGTCGCGCTGCCCGCCGTGCTCGCATTCGAGAAGCTCATATCGCCGTTGTTGGTGATGGTGGCGCTGCCCGCGGTGCTGCTGTTCAGGAAACTCAGCGATGACCTGCTTGCATTGCTGATCGTGGCGCTGCCAGCCGAACTGGTGTCGTTGAAGAGGACGGCGGACCAGTCGTTGTTGGCGATGTTGGCGCTGCCGGCCGTGCTCGAATTGTTGAAGATCAGGCCCCCGCCATTGTTGGCGATGGTGGCGCTGCCGGCCGACGC

>NZ_CP049699|3|2|9785460-9785995|CRISPRCasFinder
AGATTGTCGATGGTTGCGCTGCCGGCCG	AGCTCGAATCCCGGAAATTGATGGAGCCG
GAATTGGTGATGATGGCGTTGCCGGCCG	TGCTGCTGTTCAGGAAGTTCAGAAATCCAGGGCTG
GCATTCGTGATCGTGGCGCTGCCGGCCG	TGCTTGTGTCGTGGAAGTTGATGGTGGAGGAAATG
GCGTTGTTGATGATGGCGCTGCCGGCCG	TGCTCGAGTCGTAGAAATTCAGATAGGCGTACTGCGCATGCATGTAGTCGCTG
GTGTTGTTGATGGTCGCGCTGCCCGCCG	TGCTCGCATTCGAGAAGCTCATATCGCCG
TTGTTGGTGATGGTGGCGCTGCCCGCGG	TGCTGCTGTTCAGGAAACTCAGCGATGACCTGCTT
GCATTGCTGATCGTGGCGCTGCCAGCCG	AACTGGTGTCGTTGAAGAGGACGGCGGACCAGTCG
TTGTTGGCGATGTTGGCGCTGCCGGCCG	TGCTCGAATTGTTGAAGATCAGGCCCCCGCCA
TTGTTGGCGATGGTGGCGCTGCCGGCCGA

>NZ_CP049699|3|1|9785473-9785998|CRT
TTGCGCTGCCGGCCGAGCT	CGAATCCCGGAAATTGATGGAGCCGGAATTGGTGATGA
TGGCGTTGCCGGCCGTGCT	GCTGTTCAGGAAGTTCAGAAATCCAGGGCTGGCATTCGTGATCG
TGGCGCTGCCGGCCGTGCT	TGTGTCGTGGAAGTTGATGGTGGAGGAAATGGCGTTGTTGATGA
TGGCGCTGCCGGCCGTGCT	CGAGTCGTAGAAATTCAGATAGGCGTACTGCGCATGCATGTAGTCGCTGGTGTTGTTGATGG
TCGCGCTGCCCGCCGTGCT	CGCATTCGAGAAGCTCATATCGCCGTTGTTGGTGATGG
TGGCGCTGCCCGCGGTGCT	GCTGTTCAGGAAACTCAGCGATGACCTGCTTGCATTGCTGATCG
TGGCGCTGCCAGCCGAACT	GGTGTCGTTGAAGAGGACGGCGGACCAGTCGTTGTTGGCGATGT
TGGCGCTGCCGGCCGTGCT	CGAATTGTTGAAGATCAGGCCCCCGCCATTGTTGGCGATGG
TGGCGCTGCCGGCCGACGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049699.1\|WP_166352311.1\|9781564_9782677_+\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP049699.1\|WP_038932055.1\|9780377_9781559_+\|aminotransferase	unknown	unknown	gnl\|CDD\|181580
NZ_CP049699.1\|WP_063983967.1\|9797128_9798334_-\|beta-ketoacyl-ACP-synthase	unknown	unknown	gnl\|CDD\|235819
NZ_CP049699.1\|WP_007592476.1\|9798811_9799099_-\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|180597
NZ_CP049699.1\|WP_063983965.1\|9799309_9799651_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049699.1\|WP_166353263.1\|9792212_9793514_+\|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NZ_CP049699.1\|WP_166352315.1\|9790031_9791891_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|226233
NZ_CP049699.1\|WP_166352310.1\|9780043_9780370_+\|rhodanese-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238089
NZ_CP049699.1\|WP_014496126.1\|9774667_9775498_+\|flagellar-motor-protein-MotB	unknown	unknown	gnl\|CDD\|224279
NZ_CP049699.1\|WP_028146684.1\|9777810_9779739_+\|potassium-transporter-Kup	unknown	unknown	gnl\|CDD\|225700
NZ_CP049699.1\|WP_063983964.1\|9799989_9800619_+\|chromosome-partitioning-protein-ParB	unknown	unknown	gnl\|CDD\|226768
NZ_CP049699.1\|WP_028146686.1\|9773869_9774643_+\|flagellar-motor-protein-PomA	unknown	unknown	gnl\|CDD\|181604
NZ_CP049699.1\|WP_166352316.1\|9794862_9795795_-\|lipid-A-biosynthesis-lauroyl-acyltransferase	unknown	unknown	gnl\|CDD\|235827
NZ_CP049699.1\|WP_166352308.1\|9775771_9777670_+\|potassium-transporter-Kup	unknown	unknown	gnl\|CDD\|225700
NZ_CP049699.1\|WP_166352306.1\|9772818_9773643_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|212492
NZ_CP049699.1\|WP_063983966.1\|9798330_9798801_-\|beta-hydroxyacyl-ACP-dehydratase	unknown	unknown	gnl\|CDD\|223835
NZ_CP049699.1\|WP_166352319.1\|9800634_9800790_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|381719
NZ_CP049699.1\|WP_166352304.1\|9771687_9772407_+\|RraA-family-protein	unknown	unknown	gnl\|CDD\|319245
NZ_CP049699.1\|WP_085404826.1\|9772424_9772718_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049699.1\|WP_166352318.1\|9795803_9797081_-\|beta-ketoacyl-ACP-synthase	unknown	unknown	gnl\|CDD\|235817

Protein	Function_ID	Function_description	E-value
NZ_CP049699.1\|WP_166352311.1\|9781564_9782677_+\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	7.09635e-170
NZ_CP049699.1\|WP_038932055.1\|9780377_9781559_+\|aminotransferase	gnl\|CDD\|181580	PRK08912, PRK08912, aminotransferase.	0
NZ_CP049699.1\|WP_063983967.1\|9797128_9798334_-\|beta-ketoacyl-ACP-synthase	gnl\|CDD\|235819	PRK06519, PRK06519, beta-ketoacyl-ACP synthase.	0
NZ_CP049699.1\|WP_007592476.1\|9798811_9799099_-\|acyl-carrier-protein	gnl\|CDD\|180597	PRK06508, PRK06508, acyl carrier protein; Provisional.	2.29549e-57
NZ_CP049699.1\|WP_166353263.1\|9792212_9793514_+\|group-II-intron-reverse-transcriptase/maturase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	1.45525e-135
NZ_CP049699.1\|WP_166352315.1\|9790031_9791891_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|226233	COG3710, CadC, DNA-binding winged-HTH domains [Transcription].	6.79586e-17
NZ_CP049699.1\|WP_166352310.1\|9780043_9780370_+\|rhodanese-like-domain-containing-protein	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	1.35177e-17
NZ_CP049699.1\|WP_014496126.1\|9774667_9775498_+\|flagellar-motor-protein-MotB	gnl\|CDD\|224279	COG1360, MotB, Flagellar motor protein [Cell motility and secretion].	3.50406e-41
NZ_CP049699.1\|WP_028146684.1\|9777810_9779739_+\|potassium-transporter-Kup	gnl\|CDD\|225700	COG3158, Kup, K+ transporter [Inorganic ion transport and metabolism].	0
NZ_CP049699.1\|WP_063983964.1\|9799989_9800619_+\|chromosome-partitioning-protein-ParB	gnl\|CDD\|226768	COG4318, COG4318, Uncharacterized protein conserved in bacteria [Function unknown].	6.98807e-91
NZ_CP049699.1\|WP_028146686.1\|9773869_9774643_+\|flagellar-motor-protein-PomA	gnl\|CDD\|181604	PRK08990, PRK08990, flagellar motor protein PomA; Reviewed.	4.65719e-70
NZ_CP049699.1\|WP_166352316.1\|9794862_9795795_-\|lipid-A-biosynthesis-lauroyl-acyltransferase	gnl\|CDD\|235827	PRK06553, PRK06553, lipid A biosynthesis lauroyl acyltransferase; Provisional.	0
NZ_CP049699.1\|WP_166352308.1\|9775771_9777670_+\|potassium-transporter-Kup	gnl\|CDD\|225700	COG3158, Kup, K+ transporter [Inorganic ion transport and metabolism].	0
NZ_CP049699.1\|WP_166352306.1\|9772818_9773643_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|212492	cd05327, retinol-DH_like_SDR_c_like, retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) OxidoReductase (LPOR) and related proteins, classical (c) SDRs. Classical SDR subgroup containing retinol-DHs, LPORs, and related proteins. Retinol is processed by a medium chain alcohol dehydrogenase followed by retinol-DHs. Pchlide reductases act in chlorophyll biosynthesis. There are distinct enzymes that catalyze Pchlide reduction in light or dark conditions. Light-dependent reduction is via an NADP-dependent SDR, LPOR. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. This subgroup includes the human proteins: retinol dehydrogenase -12, -13 ,and -14, dehydrogenase/reductase SDR family member (DHRS)-12 , -13 and -X (a DHRS on chromosome X), and WWOX (WW domain-containing oxidoreductase), as well as a Neurospora crassa SDR encoded by the blue light inducible bli-4 gene. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	2.79584e-77
NZ_CP049699.1\|WP_063983966.1\|9798330_9798801_-\|beta-hydroxyacyl-ACP-dehydratase	gnl\|CDD\|223835	COG0764, FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism].	2.93972e-30
NZ_CP049699.1\|WP_166352319.1\|9800634_9800790_-\|hypothetical-protein	gnl\|CDD\|381719	cd19345, Wnt_Wnt2, Wnt domain found in protein Wnt-2 and similar proteins. Wnt-2, also called Int-1-like protein 1 (INT1L1), or Int-1-related protein (IRP), functions in the canonical Wnt signaling pathway that results in activation of transcription factors of the TCF/LEF family. It plays an important role in embryonic lung development. Wnt genes have been identified in vertebrates and invertebrates, but not in plants, unicellular eukaryotes, or prokaryotes. In humans, 19 WNT proteins are known. Because of their insolubility little is known about Wnt protein structure, but all have 23 or 24 Cys residues whose spacing is highly conserved. Signal transduction by Wnt proteins (including the Wnt/beta-catenin, the Wnt/Ca++, and the Wnt/polarity pathway) is mediated by receptors of the Frizzled and LDL-receptor-related protein (LRP) families. The Wnt signaling mediated by Wnt proteins that orchestrate and influence a myriad of cellular processes, such as cell proliferation, differentiation, tumorigenesis, apoptosis, and participation in immune defense during microbe infection.	0.009567
NZ_CP049699.1\|WP_166352304.1\|9771687_9772407_+\|RraA-family-protein	gnl\|CDD\|319245	cd16841, RraA_family, ribonuclease activity regulator RraA family. RraA protein family is named after the regulator of ribonuclease activity A (RraA), a protein that binds to RNase E and inhibits RNase E endonucleolytic cleavages. Members also include proteins with other functions, like a 4-hydroxy-4-methyl-2-oxoglutarate/4-carboxy-4-hydroxy-2-oxoadipate (HMG/CHA) aldolase from Pseudomonas putida, which catalyzes the last step of the bacterial protocatechuate 4,5-cleavage pathway and the uncharacterized YER010Cp protein from yeast, an organism lacking RNAse E.	2.59303e-21
NZ_CP049699.1\|WP_166352318.1\|9795803_9797081_-\|beta-ketoacyl-ACP-synthase	gnl\|CDD\|235817	PRK06501, PRK06501, beta-ketoacyl-ACP synthase.	0

>NZ_CP049699.1|WP_166352311.1|9781564_9782677_+|polyamine-ABC-transporter-substrate-binding-protein
MTNVGRSRRCLGFAIAAALTLLSAPAGAEERVVNFYNWSNYMAPDVLEAFTKETGIKVVYDTFDANETLETRLMAGKSGYDVVVPTAYFLQRQIKANIFQKLDKSKLPNLSNAWPVVTERLGIYDPGNVYAANYMWGTTGVGYNVAKVKQILGPDAKIDSWDIVFKPENLAKFKDCGVHMLDSADDIFPAALNYLGLDPNSTKQADLEKAADVVAKVRPSVRKFHSSEYLSALATGEICFVVGWSGDIMQARARAAEAKSGIEIGYAIPKEGAQMFFDNLAIPADAKNVKEAYELINYLYRPDVAAKNSDFLSYANGNLASQKLVDPKILNDKNIYPDEATLAKLFVITAREPATQRIINRLWTKVKTGR
>NZ_CP049699.1|WP_038932055.1|9780377_9781559_+|aminotransferase
MTTKSSSLNKVFADLPVTIFEAMSQAARDNNAINLGQGFPDDPGPEDIRRAAADASLNGYNQYPSMMGLPELRQAIATHYGHWHGLKLDPMSEVMVTSGGTEALTSAILAVVQPGDEVVCFQPVYDSYLPIIRQAGGIPRLVRLEPPHWRLNEDMLKSVFNSKTKAVLFNNPLNPSAVVYPREDLELLARYCQEFDVIAICDEVWEHVTFDEHKHIPLITIPGMRDRTIKVGSAGKIFSLTGWKIGFVCAAPPLLRVAAKVHQFLTFTTAPNLQAAVAYGLGKSDDYFLSMRKDLTRSRDRLTRGLESLGFPVLKSQGTYFLTVDLSPLGLNESDTEFCWRIVKDYKVAAIPVSAFYEQDAVTSVVRFCFAKKDETLDTALERLSDAVRGRKR
>NZ_CP049699.1|WP_166352310.1|9780043_9780370_+|rhodanese-like-domain-containing-protein
MANQVQDLTPDEVSKGVAEGRYLLVDVREPNEVDAEAYPYGVVVPLSTFDPKAIPDPQGKEVVFACRSGKRSVTASLAAQAAGLPYDKHLAGGMLGWKASGLPSKVGG
>NZ_CP049699.1|WP_028146684.1|9777810_9779739_+|potassium-transporter-Kup
MTSDVAISAPETAAANGHGEAHTTARFGALTLGSIGVVYGDIGTSPLYAFREAVMAASGAEGVPTPAAVLGVLSLILWALIVVVTLKYVVILLRADNNGEGGTLALMALAQRAVGTGGATIVLLGIISGALFYGDAVITPALSVLSAIEGMKDVTLHFEPYIVPLTVIILVGLFAVQSRGTARVAAFFGPVMCVWFAVIAIAAIHPIIEQPQVLFALNPLYAVSFMFHHGIIGFVTLGAVFLAVTGAEALYADLGHFGKRPIQTAWLFIVLPSLALNYLGQGALVLGDPGAIVSPFFQLFPQGFFRGCMVVLATAATVIASQAVITGAYSLTRQAIQLGLLPRFEIRHTSEAHSGQIFIPRINQLLLVAVVLLVLLFRSSSALASAYGISVTGTMVVTAMMGFVVIWKVWKWSPFAAAALIVPFLFLDLTFLAANLLKVFEGGWVPLALGALMIILMYTWRRGSRLLFEKSRKLEFPLADLVAMLEKRPPQRVPGTAVFLTSDPLSAPTALMHSLKHYKVLHEKNVILTIETAQTPRIDPAERVRLEQISPTFSKVTLKFGFMESPNVPKALAIARKLGWQFDIMSTSFFLSRRALKPAAHSGMPRWQDRLFISLSRSANDATDYFQIPSGRVVEVGTQVTI
>NZ_CP049699.1|WP_166352308.1|9775771_9777670_+|potassium-transporter-Kup
MTASITSTDAQDGPVTSGFWGLTLGSIGVVFGDIGTSPLYAFHEAVKAAAHGEPVSRVMVLGVLSLILWALFIVVTAKYVLLLLRADNNGEGGTLSLMALGQRALGRRSWFLLALGVVGASMFIGDSMITPAISVLSAVEGLKLVTPAFEHYVVPLTVIILVLLFAVQSKGTALVASAFGPVMVVWFTVLAVMGAVHIADDPSVLAAINPYYALQFLLSHGTIGLVTLGAVFLAVTGGEALYADLGHFGRKPIQSAWMFFVLPALLINYFGQGALVLSDPSAIEHSFYRMVPESLVLPLVGLATAATVIASQAVITGAYSLVYQAVQLGLLPRFEVRYTSETHAGQIYLPRVNRLLLIGVMLLVLLFHTPSNLASAYGIAVSTTMVADGVMGFVVIWKLWNWRAATAAAVIVPFVVVDISFFSANLLKLLEGAWVPLLFGAVMAGTIWTWRKGTGILLQKTRRIEVPLDDLIRSLEKRPPHIVKGTAVFLTSDPAFVPTALLHNLKHNKVLHEHNVVLTIETAHTPRVELSERFRMEKISDKFSKVRLRFGYMEQPNVPKALAIARKQGWQFDIMSTSFFVSRRSLKASAQSGMPLWQDHLFIALSRSANDATDYFQIPTGRVVEVGTQVTI
>NZ_CP049699.1|WP_014496126.1|9774667_9775498_+|flagellar-motor-protein-MotB
MAKKKRGDAHGGGHGWFVTFADLMGLMMSFFVMLVAFSTQDANKLKIVAGSMRDAFGVQSEARYAGIVESDGLPTRPRLKNVDHIQPEDASNTPTPDQEDRDRTSGAKIKVDRNFALAAASLRQALQDMPELTEMSKHIMFEETKQGLNLEIVDQDGRSMFADGSKVPYDRTRRLIEKLAIPLKATPLRVSIAGHTAAGFVPTRSDYGAFDLSADRANAVRQILEREGLPPSHIFAVAGKADTQPLFPDDPSLAANRRVTITLMREDPPLPPNLKP
>NZ_CP049699.1|WP_028146686.1|9773869_9774643_+|flagellar-motor-protein-PomA
MDIMTSVGLIAGIIVITAMIFMGGDLHMFISEHAMIIIFGGSVSATMIRFPLSALLHGLPLGAKFAFTMSRLSAHDLVDELARIAEIARKQGPVGLEKVETDEPFLAKGIRYVADGYDLDFIRDNLERDRDNFLMHLDEGSKIYRAIGDCAPAFGMIGTLIGMVQMFANMTDPSKLGPFMATALLATLYGALVANLFCLPIADKLHGKLLDEETNRTLIIDGILMIRDSKSPTLVREMLLAYLPEKHRHAEGEPVPA
>NZ_CP049699.1|WP_166352306.1|9772818_9773643_+|SDR-family-NAD(P)-dependent-oxidoreductase
MKMTGKTVLITGSTDGVGRHVARRLAEAGARVLIHGRDAVRAKALIDQIVQAGYAAPTFYQADLSSMSGTRELAAAVIRDHQRLDVFVSNAGIGSQNDGPQRQVSPDGYELRFAVNYLSGFLLAHLLLPLLTSAAPSRVVNVASLGQHPIDFDDVMISKGYSGSRAYAQSKLAQIMFTIDFAEELKRMGITVNALHPATYMNTTMVRAGGITPISTVEQGGAAILRLVEGDDVAGKSGLFFNGMNETRANPQAYDAGARRRLRALSLELTGLSS
>NZ_CP049699.1|WP_085404826.1|9772424_9772718_-|hypothetical-protein
MLTLFGLLTALPAVLALHLLEPGLVLPAFSVLLFVEAGFAVIAARLIHVPDNAENITLWDLAGGFTLIGCAAAVFGEPDQAALFLTEQGGPRPATRP
>NZ_CP049699.1|WP_166352304.1|9771687_9772407_+|RraA-family-protein
MTETATGPLPASVLEALGHYDTPTICNAMEIVAPERRLIGYTTKQLVCPFPDLPPIVGYARTVAIRSVLKSSLPAEEQSKRRIEYYEYVGTGHGPRISVIQDIDGPDVGYGAFWGEVQSNVHKALGCLGVITDGSIRDIPQWAPGFQALAGSIGPSHAWVHAESFGGEVRVAGMTVKSDDLIHADQHGAIVIPLDIAAKLPEAAELCGRRETPILEIARSPDFSLEKLKAALKRSAEIH
>NZ_CP049699.1|WP_166352315.1|9790031_9791891_+|tetratricopeptide-repeat-protein
MLRFAGFELDQQRAELRSADGVAIKLRPKTFEMLRLFATSGGRVLSKQELMEAVWPNVHVGEDSLFQCIRELRTALGDERRQLIKLASGGGYLLAAEVVAAPEATAQVEASRPAPTAEVATELPVEVAAVSVKSQRTMFGLSRQAMVAAVAGLCVIVVGLAVAAPVLKPDLLFRRAPPRLAVMPIVDASNDSRGAVLAAEVTGRLTDGFAKIQNISVVAPRLAAAAGGESTAAPAALSDYELRGELQFADQSWTLRTRIIKAGSGEVQAVAAMAISADETDAQPVQSRLAAGVGHVLARRLNEILEPSTSSARRTASAGGDRVAVEQALASINQTTRERFGAAQAMLQKALSDDPENLDIAVALASLQMRGIQMVWFSPEEAAAVEARANATLEQALRAKPNSIAVLEATCRFLSATNHFVESLVTCAKALNFDPWNGSALYLIGLGQVYLGRFEDALATFRLADRFDAPPASRWTWLLGAGMTYVLMGRYEEALPWLQRSIAITPGTGRSHFMLAAAYQRSGRFEEARAAIAEGLRLRPGTTRLSVWPPMKNASPVVCPAKAGMFSRRQTCRGRSQSPVVWIAEVMETETLKPIDKVSPGEATSHRAVIKVNALWPRK
>NZ_CP049699.1|WP_166353263.1|9792212_9793514_+|group-II-intron-reverse-transcriptase/maturase
MTKASIDLQDLRRRIYVKAKAEPSWRFWGLYVHVCKMETLRAAYEMAKENDGAPGIDGVTFEAIETQGVEALLEQLRDELIGRTYQPLPARRQEIPKDGGKVRVLSIPTIRDRVVQGALKLILEPVFEADFQPGSYGYRPKRTAHGAIKRVAEAIVQRKTRILDIDLRAYFDNVRHDRLLEKVARRVDDAHILHLLKMMLKASGKKGVPQGGVISPLLSNLYLNEVDRMLERAREVTRNGKYTYIEYARFADDLVVLIDAYKRHDWLIGAVTKRLREEFAKLQVEINDEKSRTVDLERGECFGFLGFEFRYFRGLSGAMRPHYTPKLKKRTALVRALKEVFRRHRSQPVERVINLINPMLRGWVNYFAVGHSSECFSFIKDWVEKKVRRHLAHAQKRKGFGWERWNRRWLYDTLGLFNAYRVRRDGPKVAPAG
>NZ_CP049699.1|WP_166352316.1|9794862_9795795_-|lipid-A-biosynthesis-lauroyl-acyltransferase
MALLPASIKARAREAGKSLGGSLIGAATVGMLRTTRNFDPAKTSDFFSRVVKTIGPRLREHRIGRANLTAAFPEKSPEEIEEILMGVWDNLGRVGAEFAHMDQVWDYDRDHPEKSRIELPQRGIELFDQIRDDGKPALIFAAHLANWELPALAAVAHGLDTAILYRRPNIASADRIIQEMRQVNMGTLIPAGRDAPLRLAQALKDGKHVAMLIDQYLTGGVEVTFFGRKTRANPMLARLLRQVECPIHGVRIIRLPGNRFRGELTEEIKPVRGADGKIDIQGTTQAITSVVEGWVREHPEQWLWLHRRWR
>NZ_CP049699.1|WP_166352318.1|9795803_9797081_-|beta-ketoacyl-ACP-synthase
MTAPRDKLGRPVVVVTGMGIMTSLGNGKADNWAKLVAGESGIRTITRFPVDGLRTTMAGTVDFVSVDPFSSTGLSERMAELVTQEALAQAGIGAKADFPGPLFLAVAPVEVEWPQRRELGRAVGAQDITYDDLLRISGGGKYSAYHHRFMFGSVAAYLAETFGTKGSPISLSTACASGATSIQLGVEAIRRGETDAALCVATDGTVNPEALVRFSLLSALSTQNDPPQAASRPFSKNRDGFVMAEGAGALVLESYEAATARGAKILGVIAGCGELTDSFHRTRSSPDGKPIIGCMNKTLADAGMTPDQIDHINAHGTATPENDKMEFNTTSAVFGELAQKIPVTSNKSMVGHTISAAGAVEAIFSLLTLEHQRIPPTINYDNPDPTILFDVVGNKARDARVTAVMSNSFGFGGQNASLILTREPA
>NZ_CP049699.1|WP_063983967.1|9797128_9798334_-|beta-ketoacyl-ACP-synthase
MTDTASKPGQTEVWITGIGLATSLGEGLDANWAALQDKRINVDEKGFAPCIVHPLMPVTFDSQIPKKGDQRQMEAWQRIGTYAAGLALDSAGIKGNKDILSKIDMVVAAGGGERDLNVDSGVLTAEVKGANAPGFLNERLMSDLRPTLFLAQLSNLLAGNIAIVHGLGGTSRTFMGEEVAGADAARIALARIASGESDIALIGGSHNGERKDLMVLYEFGDFNLKDKFAPVWARKDHPGFALGSAGAFLVLESKAHAEARGAKPFAKLSSVVADLARRKQPGDTAATLEKLWEKLPRREGKGAIISGATGAEPATSEERGFLKGHADFPVRSTGTMFGHAMETQFPLGIALAALSISRGALFPPNDSTGTEIEMQGAPTQIVVVGAGHWRGEGMALVEAVS
>NZ_CP049699.1|WP_063983966.1|9798330_9798801_-|beta-hydroxyacyl-ACP-dehydratase
MQLEYFHMIDRVVDLNVDAKTIVVEALVPKESTIFEGHFPGYPLMPGVLLIESMAQASGWLQLGVLKFERMPILAAVKEAKVRGSVFPGDLMTIEATLSHQGSGYAVTEAKIKVGGKLRANSTLTFTQIPFPNADMRGFMDAVAKRVGFPQQAGSP
>NZ_CP049699.1|WP_007592476.1|9798811_9799099_-|acyl-carrier-protein
MSSTFDQVATIIAETCDIPRDTITPDSHAIDDLGIDSLDFLDIAFAIDKQFGIKLPLEKWTQEVNDGKATTEQYFVLKNLCARIDELVAAKGASA
>NZ_CP049699.1|WP_063983965.1|9799309_9799651_-|hypothetical-protein
MKTQRPISSDDEHRVLQFRPRNASPPPVQRGSGTVQPLRVAPEPLDLSRYEKPRPEPDNFRHRMLANIAALAFTIALTAIGIWLAVSIADLRRTQDCVLMGRRDCAKITTPHI
>NZ_CP049699.1|WP_063983964.1|9799989_9800619_+|chromosome-partitioning-protein-ParB
MTTTNAREPRVHPVPILSLRPTQMTVGMREVKEKRKRWREHGKKKQADLLGNHMIPVVYGPDQRYYVIDHHHLGRALHDEGVKEVLVTVVGDLRMVEREAFWGVMDNKRWVYPYDSKGERRPFRDLPKSVVDLKDDPFRSLAGELRRMGGFAKDTTPFSEFLWADFLRRKLTRKAVDANFDKALEKALSAAKSKDAIYLPGWCGPADDD
>NZ_CP049699.1|WP_166352319.1|9800634_9800790_-|hypothetical-protein
MNVVIRKLNGLWHLVVGSCQIRTPFLATQDRALVVSYARRVYPGAKIFQRD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP049699_1	1.1\|2339183\|61\|NZ_CP049699\|PILER-CR	2339183-2339243	61	NZ_CP049699.1	2339394-2339454	1	0.984
NZ_CP049699_1	1.2\|2339297\|58\|NZ_CP049699\|PILER-CR	2339297-2339354	58	NZ_CP049699.1	2339394-2339451	0	1.0

1. spacer 1.1|2339183|61|NZ_CP049699|PILER-CR matches to position: 2339394-2339454, mismatch: 1, identity: 0.984

cgcttcggacctagttagcatcaacgaaaatccggccagcagccgtcttcctcgtggctg	CRISPR spacer
cgcttcggacctagttagcatcaacgaaaatccggccagcagccgtcttcctcgtggctg	Protospacer
************************************************************

2. spacer 1.2|2339297|58|NZ_CP049699|PILER-CR matches to position: 2339394-2339451, mismatch: 0, identity: 1.0

cgcttcggacctagttagcatcaacgaaaatccggccagcagccgtcttcctcgtggc	CRISPR spacer
cgcttcggacctagttagcatcaacgaaaatccggccagcagccgtcttcctcgtggc	Protospacer
**********************************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP049699_3	3.1\|9785488\|29\|NZ_CP049699\|CRISPRCasFinder	9785488-9785516	29	NZ_CP046807	Vibrio alginolyticus strain 2439-01 plasmid unnamed1, complete sequence	36978-37006	4	0.862
NZ_CP049699_4	4.1\|9786115\|29\|NZ_CP049699\|CRISPRCasFinder	9786115-9786143	29	CP042595	Streptomyces albogriseolus strain LBX-2 plasmid pSALBX2, complete sequence	4676-4704	5	0.828
NZ_CP049699_4	4.1\|9786115\|29\|NZ_CP049699\|CRISPRCasFinder	9786115-9786143	29	NZ_CP007795	Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence	470719-470747	5	0.828
NZ_CP049699_4	4.1\|9786115\|29\|NZ_CP049699\|CRISPRCasFinder	9786115-9786143	29	NZ_CP032341	Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence	771417-771445	5	0.828
NZ_CP049699_4	4.1\|9786115\|29\|NZ_CP049699\|CRISPRCasFinder	9786115-9786143	29	NZ_CP032347	Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence	283332-283360	5	0.828
NZ_CP049699_4	4.1\|9786115\|29\|NZ_CP049699\|CRISPRCasFinder	9786115-9786143	29	NZ_CP012916	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence	277189-277217	5	0.828
NZ_CP049699_4	4.1\|9786115\|29\|NZ_CP049699\|CRISPRCasFinder	9786115-9786143	29	MF490239	Pseudomonas phage vB_PaeS_S218, complete genome	51583-51611	5	0.828
NZ_CP049699_4	4.1\|9786115\|29\|NZ_CP049699\|CRISPRCasFinder	9786115-9786143	29	MN871463	UNVERIFIED: Pseudomonas phage Pa-L, complete genome	47865-47893	5	0.828
NZ_CP049699_4	4.1\|9786115\|29\|NZ_CP049699\|CRISPRCasFinder	9786115-9786143	29	MN871456	UNVERIFIED: Pseudomonas phage Pa-C, complete genome	10120-10148	5	0.828
NZ_CP049699_4	4.1\|9786115\|29\|NZ_CP049699\|CRISPRCasFinder	9786115-9786143	29	MN871469	UNVERIFIED: Pseudomonas phage Pa-S, complete genome	10128-10156	5	0.828
NZ_CP049699_4	4.1\|9786115\|29\|NZ_CP049699\|CRISPRCasFinder	9786115-9786143	29	DI373488	KR 1020130142837-A/2: Bacteriophage of Pseudomonas aeruginosa and uses thereof	16717-16745	5	0.828
NZ_CP049699_4	4.1\|9786115\|29\|NZ_CP049699\|CRISPRCasFinder	9786115-9786143	29	MH399779	Microbacterium phage Jacko, complete genome	32694-32722	6	0.793
NZ_CP049699_4	4.1\|9786115\|29\|NZ_CP049699\|CRISPRCasFinder	9786115-9786143	29	NZ_CP022363	Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence	820484-820512	6	0.793
NZ_CP049699_3	3.1\|9785488\|29\|NZ_CP049699\|CRISPRCasFinder	9785488-9785516	29	NZ_CP013054	Sinorhizobium americanum CCGM7 plasmid C, complete sequence	172939-172967	7	0.759
NZ_CP049699_3	3.8\|9785935\|32\|NZ_CP049699\|CRISPRCasFinder	9785935-9785966	32	NZ_CP007129	Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence	448296-448327	9	0.719

1. spacer 3.1|9785488|29|NZ_CP049699|CRISPRCasFinder matches to NZ_CP046807 (Vibrio alginolyticus strain 2439-01 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.862

-agctcgaatcccggaaattgatggagccg	CRISPR spacer
taactc-aatccctgaaattgacggagccg	Protospacer
 *.*** ****** ********.*******

2. spacer 4.1|9786115|29|NZ_CP049699|CRISPRCasFinder matches to CP042595 (Streptomyces albogriseolus strain LBX-2 plasmid pSALBX2, complete sequence) position: , mismatch: 5, identity: 0.828

tgttcgcgttgcggaagttcgccgtgccg	CRISPR spacer
gtttcgcggtgcggaggttcgccgtgcag	Protospacer
  ****** ******.*********** *

3. spacer 4.1|9786115|29|NZ_CP049699|CRISPRCasFinder matches to NZ_CP007795 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence) position: , mismatch: 5, identity: 0.828

tgttcgcgttgcggaagttcgccgtgccg	CRISPR spacer
ggatcgcgtggcggaagtccgccgtgcgg	Protospacer
 * ****** ********.******** *

4. spacer 4.1|9786115|29|NZ_CP049699|CRISPRCasFinder matches to NZ_CP032341 (Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence) position: , mismatch: 5, identity: 0.828

tgttcgcgttgcggaagttcgccgtgccg	CRISPR spacer
ggatcgcgtggcggaagtccgccgtgcgg	Protospacer
 * ****** ********.******** *

5. spacer 4.1|9786115|29|NZ_CP049699|CRISPRCasFinder matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 5, identity: 0.828

tgttcgcgttgcggaagttcgccgtgccg	CRISPR spacer
ggatcgcgtggcggaagtccgccgtgcgg	Protospacer
 * ****** ********.******** *

6. spacer 4.1|9786115|29|NZ_CP049699|CRISPRCasFinder matches to NZ_CP012916 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence) position: , mismatch: 5, identity: 0.828

tgttcgcgttgcggaagttcgccgtgccg	CRISPR spacer
ggatcgcgtggcggaagtccgccgtgcgg	Protospacer
 * ****** ********.******** *

7. spacer 4.1|9786115|29|NZ_CP049699|CRISPRCasFinder matches to MF490239 (Pseudomonas phage vB_PaeS_S218, complete genome) position: , mismatch: 5, identity: 0.828

tgttcgcgttgcggaagttcgccgtgccg	CRISPR spacer
tgtagtcgttgcggaagatcggcgtgccg	Protospacer
***   *********** *** *******

8. spacer 4.1|9786115|29|NZ_CP049699|CRISPRCasFinder matches to MN871463 (UNVERIFIED: Pseudomonas phage Pa-L, complete genome) position: , mismatch: 5, identity: 0.828

tgttcgcgttgcggaagttcgccgtgccg	CRISPR spacer
tgtagtcgttgcggaagatcggcgtgccg	Protospacer
***   *********** *** *******

9. spacer 4.1|9786115|29|NZ_CP049699|CRISPRCasFinder matches to MN871456 (UNVERIFIED: Pseudomonas phage Pa-C, complete genome) position: , mismatch: 5, identity: 0.828

tgttcgcgttgcggaagttcgccgtgccg	CRISPR spacer
tgtagtcgttgcggaagatcggcgtgccg	Protospacer
***   *********** *** *******

10. spacer 4.1|9786115|29|NZ_CP049699|CRISPRCasFinder matches to MN871469 (UNVERIFIED: Pseudomonas phage Pa-S, complete genome) position: , mismatch: 5, identity: 0.828

tgttcgcgttgcggaagttcgccgtgccg	CRISPR spacer
tgtagtcgttgcggaagatcggcgtgccg	Protospacer
***   *********** *** *******

11. spacer 4.1|9786115|29|NZ_CP049699|CRISPRCasFinder matches to DI373488 (KR 1020130142837-A/2: Bacteriophage of Pseudomonas aeruginosa and uses thereof) position: , mismatch: 5, identity: 0.828

tgttcgcgttgcggaagttcgccgtgccg	CRISPR spacer
tgtagtcgttgcggaagatcggcgtgccg	Protospacer
***   *********** *** *******

12. spacer 4.1|9786115|29|NZ_CP049699|CRISPRCasFinder matches to MH399779 (Microbacterium phage Jacko, complete genome) position: , mismatch: 6, identity: 0.793

tgttcgcgttgcggaagttcgccgtgccg	CRISPR spacer
tcgtcgggttgcggaagttcaccgtgctc	Protospacer
*  *** *************.******.

13. spacer 4.1|9786115|29|NZ_CP049699|CRISPRCasFinder matches to NZ_CP022363 (Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence) position: , mismatch: 6, identity: 0.793

tgttcgcgttgcggaagttcgccgtgccg	CRISPR spacer
ggatcgcgtggcggaagtccgccgtgcga	Protospacer
 * ****** ********.******** .

14. spacer 3.1|9785488|29|NZ_CP049699|CRISPRCasFinder matches to NZ_CP013054 (Sinorhizobium americanum CCGM7 plasmid C, complete sequence) position: , mismatch: 7, identity: 0.759

agctcgaatcccggaaattgatggagccg	CRISPR spacer
ggagttgatcccggaaatcgatggagccg	Protospacer
.*  . .***********.**********

15. spacer 3.8|9785935|32|NZ_CP049699|CRISPRCasFinder matches to NZ_CP007129 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.719

tgctcgaattgttgaagatcaggcccccgcca	CRISPR spacer
gcgtcatgttgtcgaagatcaggctcccgccc	Protospacer
   **. .****.***********.******

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

135701 : 179560

Stx2-converting_phage(12.5%)

integrase,transposase,tRNA

attL 153160:153178|attR 177696:177714

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_166341169.1\|135701_136775_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_166341171.1\|136871_137909_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_166353116.1\|139006_139753_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_166353117.1\|139888_141043_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_018273742.1\|141764_142121_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_035681142.1\|142171_143722_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	9.0e-83	38.9
WP_018273740.1\|143769_144369_+	UPF0149 family protein	NA	NA	NA	NA
WP_166341173.1\|144455_145604_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	3.8e-94	50.1
WP_085404705.1\|145604_145823_-	hypothetical protein	NA	NA	NA	NA
WP_085404706.1\|146047_147025_+	cysteine synthase A	A0A1X9I5K7	Streptococcus_phage	7.2e-78	52.1
WP_028152108.1\|147028_147268_+	hypothetical protein	NA	NA	NA	NA
WP_085404707.1\|147310_148063_-	amino acid ABC transporter ATP-binding protein	A0A1V0SJ29	Klosneuvirus	8.4e-10	26.5
WP_166341175.1\|148074_148917_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_166341177.1\|148913_149657_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_166341179.1\|149755_150568_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_166341181.1\|150644_151814_-	N-methyl-L-tryptophan oxidase	NA	NA	NA	NA
WP_166341183.1\|151938_152898_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_166341185.1\|152953_154381_-	peptidase	NA	NA	NA	NA
153160:153178	attL	NA	NA	NA	NA
WP_166341187.1\|154586_155462_-	DMT family transporter	NA	NA	NA	NA
WP_071913733.1\|155603_156002_+	RidA family protein	NA	NA	NA	NA
WP_071913735.1\|156061_156607_-	hypothetical protein	NA	NA	NA	NA
WP_014495138.1\|156551_156896_-	hypothetical protein	NA	NA	NA	NA
WP_085404716.1\|157104_157692_-\|tRNA	methionyl-tRNA formyltransferase	A4JWM2	Burkholderia_virus	3.7e-29	36.0
WP_166341189.1\|157883_158168_+	hypothetical protein	NA	NA	NA	NA
WP_166341191.1\|158503_158737_+	hypothetical protein	NA	NA	NA	NA
WP_063983186.1\|158742_159045_-	hypothetical protein	NA	NA	NA	NA
WP_166341193.1\|159460_161506_-	acetoacetate--CoA ligase	NA	NA	NA	NA
WP_166341195.1\|161798_162023_-	hypothetical protein	NA	NA	NA	NA
WP_166341197.1\|162279_162999_+	porin family protein	NA	NA	NA	NA
WP_166341199.1\|163189_164275_+	AI-2E family transporter	NA	NA	NA	NA
WP_028152127.1\|164372_164765_+	NUDIX hydrolase	NA	NA	NA	NA
WP_166353119.1\|164902_165145_-	hypothetical protein	NA	NA	NA	NA
WP_011084514.1\|165216_166281_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_028152129.1\|166458_166701_-	hypothetical protein	NA	NA	NA	NA
WP_166341201.1\|167378_167549_-	hypothetical protein	NA	NA	NA	NA
WP_166341203.1\|167766_168135_+	hypothetical protein	NA	NA	NA	NA
WP_166096634.1\|168222_168393_-	hypothetical protein	NA	NA	NA	NA
WP_166341205.1\|168664_169333_+	hypothetical protein	NA	NA	NA	NA
WP_166341207.1\|169719_169944_+	hypothetical protein	NA	NA	NA	NA
WP_071913753.1\|170295_170583_-	hypothetical protein	NA	NA	NA	NA
WP_063983199.1\|170771_171044_-	hypothetical protein	NA	NA	NA	NA
WP_166353121.1\|171558_172688_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	2.0e-18	33.7
WP_018272321.1\|173033_174377_+\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_071917443.1\|174816_175053_+	hypothetical protein	NA	NA	NA	NA
WP_155795197.1\|175043_175205_+	hypothetical protein	NA	NA	NA	NA
WP_166341209.1\|175223_175391_+	hypothetical protein	NA	NA	NA	NA
WP_166341211.1\|175641_176913_+\|integrase	site-specific integrase	A5LH57	Enterobacteria_phage	6.2e-21	26.5
WP_166341213.1\|177020_177488_+	hypothetical protein	NA	NA	NA	NA
WP_166341215.1\|177620_177836_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
177696:177714	attR	NA	NA	NA	NA
WP_166341218.1\|178018_179560_+\|transposase	IS21-like element ISFK1 family transposase	K4I413	Acidithiobacillus_phage	6.0e-127	44.3

DBSCAN-SWA_2

296646 : 312298

Shigella_phage(60.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_166353134.1\|296646_297775_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	1.1e-18	33.7
WP_166341375.1\|298628_299693_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_080583977.1\|300576_300876_-	DUF3892 domain-containing protein	NA	NA	NA	NA
WP_157789084.1\|301491_301878_-	hypothetical protein	NA	NA	NA	NA
WP_166341377.1\|302595_302835_-	transcriptional regulator	NA	NA	NA	NA
WP_166341379.1\|302925_303234_+	hypothetical protein	NA	NA	NA	NA
WP_166341381.1\|303969_304176_-	hypothetical protein	NA	NA	NA	NA
WP_166341383.1\|304364_305471_+	hypothetical protein	NA	NA	NA	NA
WP_109866565.1\|305709_306839_-\|transposase	IS3-like element ISRj2 family transposase	U5P429	Shigella_phage	1.1e-18	33.7
WP_028154091.1\|306987_307170_-	hypothetical protein	A0A1X9SH55	Bradyrhizobium_phage	1.2e-10	60.0
WP_109866565.1\|307660_308789_+\|transposase	IS3-like element ISRj2 family transposase	U5P429	Shigella_phage	1.1e-18	33.7
WP_041483034.1\|309987_310266_+\|transposase	transposase	NA	NA	NA	NA
WP_011090953.1\|310262_310619_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_060909066.1\|310672_312298_+\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	9.8e-88	38.7

DBSCAN-SWA_3

363617 : 388440

Mycobacterium_phage(14.29%)

integrase,protease,transposase,portal,terminase,capsid

attL 366146:366161|attR 385863:385878

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038952271.1\|363617_364886_-\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	3.9e-92	45.9
WP_166341434.1\|365775_365994_-	hypothetical protein	NA	NA	NA	NA
366146:366161	attL	NA	NA	NA	NA
WP_166353138.1\|366309_366909_-\|integrase	site-specific integrase	A0A142F2H8	Mycobacterium_phage	1.3e-05	28.6
WP_085967575.1\|367057_368187_-\|transposase	IS3-like element ISRj2 family transposase	U5P429	Shigella_phage	2.0e-18	33.7
WP_166341436.1\|368241_368823_-	hypothetical protein	A0A076G7B8	Sinorhizobium_phage	6.1e-16	29.6
WP_166341438.1\|368882_369179_+	hypothetical protein	NA	NA	NA	NA
WP_155258159.1\|369272_369530_-	hypothetical protein	NA	NA	NA	NA
WP_166341440.1\|369801_370302_+	DUF4118 domain-containing protein	NA	NA	NA	NA
WP_028153794.1\|370298_370577_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_166341442.1\|370575_370917_+	hypothetical protein	NA	NA	NA	NA
WP_038945118.1\|370974_371340_+	hypothetical protein	NA	NA	NA	NA
WP_166341444.1\|371339_371513_+	hypothetical protein	NA	NA	NA	NA
WP_028153791.1\|371509_371767_+	DUF2312 domain-containing protein	A0A2L0V115	Agrobacterium_phage	1.9e-17	62.2
WP_166341446.1\|371766_372258_+	HNH endonuclease	NA	NA	NA	NA
WP_166341448.1\|372254_374315_+	hypothetical protein	NA	NA	NA	NA
WP_166341450.1\|374311_374719_+	hypothetical protein	NA	NA	NA	NA
WP_028153787.1\|374715_375027_+	hypothetical protein	A0A191VYP5	Roseobacter_phage	2.1e-07	45.8
WP_049807985.1\|375023_375293_+	hypothetical protein	NA	NA	NA	NA
WP_166341452.1\|375282_375615_+	hypothetical protein	NA	NA	NA	NA
WP_166341454.1\|375676_376909_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_157790397.1\|376905_377589_+	hypothetical protein	NA	NA	NA	NA
WP_049807983.1\|377768_378080_+	hypothetical protein	NA	NA	NA	NA
WP_166341456.1\|378126_378828_-	response regulator transcription factor	Q56AR1	Bacillus_thuringiensis_phage	1.9e-08	32.4
WP_166341458.1\|379168_379369_-	hypothetical protein	NA	NA	NA	NA
WP_166341460.1\|379420_379915_+	hypothetical protein	I3ULZ5	Rhodobacter_phage	4.4e-23	41.3
WP_166341462.1\|379911_381642_+\|terminase	terminase large subunit	A0A0N7KZG0	Stx2-converting_phage	5.1e-111	39.0
WP_166341464.1\|381645_382959_+\|portal	phage portal protein	M4QP41	Tetraselmis_viridis_virus	2.9e-82	40.4
WP_166341466.1\|382955_383807_+\|protease	Clp protease ClpP	A0A0U4B0J0	Pseudomonas_phage	1.1e-69	54.4
WP_049813169.1\|383849_385190_+\|capsid	phage major capsid protein	Q6JIM7	Burkholderia_virus	5.2e-79	43.7
WP_157789229.1\|385219_385429_+	hypothetical protein	NA	NA	NA	NA
WP_166353140.1\|385616_386201_+	hypothetical protein	M4QNT5	Tetraselmis_viridis_virus	1.2e-24	55.3
385863:385878	attR	NA	NA	NA	NA
WP_166341468.1\|386194_386806_+	hypothetical protein	NA	NA	NA	NA
WP_166341470.1\|386805_387129_+	hypothetical protein	NA	NA	NA	NA
WP_166341472.1\|387130_387529_+	hypothetical protein	NA	NA	NA	NA
WP_166341474.1\|387525_388440_+	hypothetical protein	B5WZS7	Pseudomonas_phage	1.1e-56	45.0

DBSCAN-SWA_4

557595 : 597860

Shigella_phage(20.0%)

holin,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_109866565.1\|557595_558725_-\|transposase	IS3-like element ISRj2 family transposase	U5P429	Shigella_phage	1.1e-18	33.7
WP_166341707.1\|559119_559842_+	cytochrome c	NA	NA	NA	NA
WP_166353156.1\|559880_560234_-	cytochrome c	NA	NA	NA	NA
WP_166341709.1\|560499_560952_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA
WP_166341711.1\|561224_561386_+	hypothetical protein	NA	NA	NA	NA
WP_166341713.1\|561607_563896_+	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	8.4e-61	30.7
WP_166341715.1\|563914_564226_-	DUF3240 family protein	NA	NA	NA	NA
WP_166341717.1\|564222_567297_-	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	7.1e-79	24.7
WP_166341719.1\|567297_568434_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_011084514.1\|569564_570629_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_166341721.1\|570638_570851_-	hypothetical protein	NA	NA	NA	NA
WP_166341723.1\|570868_571555_-	CBS domain-containing protein	NA	NA	NA	NA
WP_166341725.1\|571691_572138_+	host attachment protein	NA	NA	NA	NA
WP_166341727.1\|572286_573108_+	universal stress protein	NA	NA	NA	NA
WP_166341729.1\|573190_573661_+	CBS domain-containing protein	NA	NA	NA	NA
WP_166341731.1\|573694_574807_+	OpgC domain-containing protein	NA	NA	NA	NA
WP_166341733.1\|574836_576432_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_166353157.1\|576428_577346_-	ribose-phosphate diphosphokinase	NA	NA	NA	NA
WP_166341735.1\|577345_578878_-	thymidine phosphorylase family protein	NA	NA	NA	NA
WP_166341737.1\|579375_579807_+	hypothetical protein	NA	NA	NA	NA
WP_166341739.1\|579892_580780_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_166341741.1\|580873_581203_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_166341743.1\|581803_582583_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_166353158.1\|582805_583795_-	Tat pathway signal protein	NA	NA	NA	NA
WP_157789200.1\|584096_584255_-	hypothetical protein	NA	NA	NA	NA
WP_166341745.1\|584275_584491_-	hypothetical protein	NA	NA	NA	NA
WP_166341747.1\|584905_585460_+\|protease	trypsin-like serine protease	NA	NA	NA	NA
WP_166341749.1\|585523_585703_-	hypothetical protein	NA	NA	NA	NA
WP_166353159.1\|585726_586425_-	CBS domain-containing protein	NA	NA	NA	NA
WP_166341751.1\|587193_587379_-	hypothetical protein	NA	NA	NA	NA
WP_038937292.1\|588124_588454_-	hypothetical protein	NA	NA	NA	NA
WP_041483034.1\|589666_589945_+\|transposase	transposase	NA	NA	NA	NA
WP_011090953.1\|589941_590298_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_060909066.1\|590351_591977_+\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	9.8e-88	38.7
WP_166341753.1\|592876_593719_+	ribonuclease HII	NA	NA	NA	NA
WP_166341755.1\|593766_593970_-	hypothetical protein	NA	NA	NA	NA
WP_014494399.1\|594292_595126_-	hypothetical protein	NA	NA	NA	NA
WP_071911042.1\|595261_595720_+	low affinity iron permease family protein	A0A1C9EHA1	Mycobacterium_phage	5.3e-07	43.4
WP_014494401.1\|595719_596241_+	DUF1003 domain-containing protein	NA	NA	NA	NA
WP_028170171.1\|596398_596638_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_166341757.1\|596703_597447_-	hypothetical protein	NA	NA	NA	NA
WP_014494404.1\|597443_597860_-\|holin	phage holin family protein	NA	NA	NA	NA

DBSCAN-SWA_5

608558 : 651095

Bradyrhizobium_phage(20.0%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085971921.1\|608558_609318_+\|transposase	IS5-like element ISBj2 family transposase	A0A0N9SJT9	Paenibacillus_phage	3.6e-08	35.5
WP_166341761.1\|609513_609981_-	DNA ligase	A0A1X9SH33	Bradyrhizobium_phage	5.9e-46	60.1
WP_166341763.1\|610892_613256_+	PAS domain S-box protein	NA	NA	NA	NA
WP_166341765.1\|613559_613961_-	transporter substrate-binding protein	NA	NA	NA	NA
WP_018272321.1\|614354_615698_-\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_014494388.1\|617408_617618_-	hypothetical protein	NA	NA	NA	NA
WP_166341767.1\|617869_619039_+	GAF domain-containing protein	NA	NA	NA	NA
WP_084795104.1\|619338_619581_-	septal ring lytic transglycosylase RlpA family protein	F5B3X9	Synechococcus_phage	5.8e-13	51.4
WP_063982871.1\|619757_619982_+	hypothetical protein	NA	NA	NA	NA
WP_166341769.1\|619988_620270_-	hypothetical protein	NA	NA	NA	NA
WP_038936050.1\|620335_620839_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_071911104.1\|621078_621717_-	cysteine hydrolase	NA	NA	NA	NA
WP_063982874.1\|621786_622353_-	MOSC domain-containing protein	NA	NA	NA	NA
WP_166353161.1\|622345_623398_-	YihY/virulence factor BrkB family protein	NA	NA	NA	NA
WP_166341771.1\|623575_623980_-	VOC family protein	NA	NA	NA	NA
WP_166341773.1\|625275_625839_+	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_071911114.1\|625835_626183_+	DUF3147 family protein	NA	NA	NA	NA
WP_166353162.1\|626185_626656_+	hypothetical protein	NA	NA	NA	NA
WP_038937344.1\|626676_627192_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_038937343.1\|627279_627474_+	hypothetical protein	NA	NA	NA	NA
WP_166341775.1\|627913_628069_-	hypothetical protein	NA	NA	NA	NA
WP_166341777.1\|628513_631273_+	AMP-binding protein	A0A2K9L3I8	Tupanvirus	1.8e-17	24.0
WP_166341779.1\|631386_631977_-	DNA ligase	A0A1X9SH33	Bradyrhizobium_phage	2.6e-67	64.7
WP_011084514.1\|632665_633730_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_166341781.1\|633749_634052_-	hypothetical protein	NA	NA	NA	NA
WP_026192128.1\|634064_635129_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_166341783.1\|635764_636007_+	hypothetical protein	NA	NA	NA	NA
WP_166341785.1\|636136_636334_+	hypothetical protein	NA	NA	NA	NA
WP_166341787.1\|636460_636655_+	hypothetical protein	NA	NA	NA	NA
WP_166341789.1\|637257_637488_+	hypothetical protein	NA	NA	NA	NA
WP_166341791.1\|637497_637767_-	hypothetical protein	NA	NA	NA	NA
WP_166341793.1\|637763_638228_-	hypothetical protein	NA	NA	NA	NA
WP_166341795.1\|638862_639210_+	hypothetical protein	NA	NA	NA	NA
WP_166341797.1\|641890_642139_+	hypothetical protein	NA	NA	NA	NA
WP_166341799.1\|642131_642371_-	hypothetical protein	NA	NA	NA	NA
WP_166341801.1\|644353_644737_+	RidA family protein	NA	NA	NA	NA
WP_166341803.1\|644778_645300_-	Hsp20/alpha crystallin family protein	A0A1B2LRT2	Wolbachia_phage	6.9e-19	40.0
WP_166341805.1\|645575_645794_-	cation transporter	W0UWC9	Spodoptera_exigua_multiple_nucleopolyhedrovirus	5.2e-05	37.9
WP_085967575.1\|645899_647028_+\|transposase	IS3-like element ISRj2 family transposase	U5P429	Shigella_phage	2.0e-18	33.7
WP_166341807.1\|647249_648872_-	chaperonin GroEL	A0A240F779	uncultured_virus	9.9e-149	52.2
WP_166353163.1\|649250_651095_+\|protease	ATP-dependent zinc metalloprotease FtsH	E5ESM9	Bathycoccus_sp._RCC1105_virus	4.1e-98	43.1

DBSCAN-SWA_6

795928 : 806122

uncultured_Mediterranean_phage(88.89%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_166341931.1\|795928_797311_-	LysM peptidoglycan-binding domain-containing M23 family metallopeptidase	Q8SBN9	Clostridium_phage	2.4e-18	40.9
WP_049808103.1\|797420_798038_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.8e-27	49.4
WP_166341932.1\|798308_798680_+	response regulator	NA	NA	NA	NA
WP_085404650.1\|798683_799451_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	9.8e-38	38.4
WP_166341933.1\|799556_799919_-	hypothetical protein	NA	NA	NA	NA
WP_063983114.1\|800116_801448_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	8.5e-98	52.8
WP_166341934.1\|801641_802454_-	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	1.4e-55	48.4
WP_166341935.1\|802450_802996_-	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_028156107.1\|803082_803319_-	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	5.5e-08	63.6
WP_063983111.1\|803486_804236_-	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	1.2e-43	49.7
WP_063983110.1\|804257_805097_-	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	1.5e-31	37.5
WP_063983109.1\|805093_806122_-	beta-N-acetylhexosaminidase	A0A1B1IVS3	uncultured_Mediterranean_phage	5.3e-23	42.7

DBSCAN-SWA_7

1094013 : 1110953

Acidithiobacillus_phage(40.0%)

integrase,head,protease,transposase

attL 1091202:1091217|attR 1100085:1100100

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1091202:1091217	attL	NA	NA	NA	NA
WP_166342053.1\|1094013_1095276_+\|integrase	site-specific integrase	A0A0E3Y5J2	Fusobacterium_phage	2.5e-06	26.7
WP_166342054.1\|1095651_1096995_-\|transposase	IS1380-like element ISBdi2 family transposase	NA	NA	NA	NA
WP_166342055.1\|1097116_1097365_-	hypothetical protein	NA	NA	NA	NA
WP_166342056.1\|1097537_1097720_-	hypothetical protein	NA	NA	NA	NA
WP_166342057.1\|1098007_1098217_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011090937.1\|1099447_1100209_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.3e-66	53.1
1100085:1100100	attR	NA	NA	NA	NA
WP_166341218.1\|1100227_1101769_-\|transposase	IS21-like element ISFK1 family transposase	K4I413	Acidithiobacillus_phage	6.0e-127	44.3
WP_166342058.1\|1101953_1102388_+	hypothetical protein	NA	NA	NA	NA
WP_018273740.1\|1103214_1103814_-	UPF0149 family protein	NA	NA	NA	NA
WP_035681142.1\|1103861_1105412_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	9.0e-83	38.9
WP_018273742.1\|1105462_1105819_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_166353185.1\|1107563_1108692_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	2.8e-17	33.1
WP_166342059.1\|1109704_1109977_-	hypothetical protein	NA	NA	NA	NA
WP_166342060.1\|1109976_1110306_-	hypothetical protein	NA	NA	NA	NA
WP_166342061.1\|1110446_1110953_-\|head,protease	HK97 family phage prohead protease	NA	NA	NA	NA

DBSCAN-SWA_8

1532179 : 1590699

Stx2-converting_phage(28.57%)

integrase,transposase

attL 1548800:1548816|attR 1569267:1569283

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_166342317.1\|1532179_1533244_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_166342318.1\|1533769_1534012_-	DUF2274 domain-containing protein	NA	NA	NA	NA
WP_026192128.1\|1534282_1535347_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_166342319.1\|1535557_1536898_-	restriction endonuclease	NA	NA	NA	NA
WP_166342320.1\|1537027_1537435_+	hypothetical protein	NA	NA	NA	NA
WP_166342321.1\|1537653_1538187_+	hypothetical protein	NA	NA	NA	NA
WP_166342322.1\|1538183_1539434_+	hypothetical protein	NA	NA	NA	NA
WP_166342323.1\|1539911_1542326_-	response regulator	NA	NA	NA	NA
WP_166342324.1\|1542643_1543357_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_166342325.1\|1543367_1543571_-	hypothetical protein	NA	NA	NA	NA
WP_028149875.1\|1543597_1543777_-	hypothetical protein	NA	NA	NA	NA
WP_166342326.1\|1543974_1544355_+	YciI family protein	NA	NA	NA	NA
WP_166342327.1\|1544364_1544955_-	DUF1211 domain-containing protein	NA	NA	NA	NA
WP_166342328.1\|1545082_1547140_+	ATP-dependent helicase	A7KV33	Bacillus_phage	1.7e-68	29.7
WP_166342329.1\|1547202_1548450_-	amidohydrolase family protein	NA	NA	NA	NA
WP_071912729.1\|1548462_1548966_-	GAF domain-containing protein	NA	NA	NA	NA
1548800:1548816	attL	NA	NA	NA	NA
WP_166342330.1\|1548962_1550321_-	MFS transporter	NA	NA	NA	NA
WP_166342331.1\|1550435_1551359_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_166342332.1\|1552948_1553779_+	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA
WP_166342333.1\|1553904_1554441_-	hypothetical protein	NA	NA	NA	NA
WP_166342334.1\|1554497_1554983_-	hypothetical protein	NA	NA	NA	NA
WP_166342335.1\|1555290_1555764_+	hypothetical protein	NA	NA	NA	NA
WP_166342336.1\|1555889_1556594_+	hypothetical protein	NA	NA	NA	NA
WP_166342337.1\|1556703_1557105_-	hypothetical protein	NA	NA	NA	NA
WP_026192391.1\|1557295_1557694_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_011090953.1\|1557690_1558047_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_041482620.1\|1558100_1559726_+\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	9.8e-88	38.7
WP_166342338.1\|1560335_1561082_+	DUF4102 domain-containing protein	NA	NA	NA	NA
WP_166342339.1\|1561018_1561600_+\|integrase	site-specific integrase	A0A1W6JPG6	Morganella_phage	1.0e-10	32.5
WP_166342340.1\|1561706_1561973_+	hypothetical protein	NA	NA	NA	NA
WP_166342341.1\|1562281_1562599_+	hypothetical protein	NA	NA	NA	NA
WP_166342342.1\|1562595_1563294_+	hypothetical protein	NA	NA	NA	NA
WP_166342343.1\|1563825_1564446_+	hypothetical protein	NA	NA	NA	NA
WP_166342344.1\|1565012_1565285_+	hypothetical protein	NA	NA	NA	NA
WP_166342345.1\|1565356_1567237_+	hypothetical protein	A0A2D2W1V2	Sinorhizobium_phage	9.1e-45	36.4
WP_109866565.1\|1567340_1568470_-\|transposase	IS3-like element ISRj2 family transposase	U5P429	Shigella_phage	1.1e-18	33.7
WP_166342346.1\|1568658_1569261_+	hypothetical protein	NA	NA	NA	NA
WP_018273740.1\|1569898_1570498_-	UPF0149 family protein	NA	NA	NA	NA
1569267:1569283	attR	NA	NA	NA	NA
WP_035681142.1\|1570545_1572096_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	9.0e-83	38.9
WP_018273742.1\|1572146_1572503_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_166342347.1\|1573197_1574541_+\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_166342348.1\|1574667_1575102_-	hypothetical protein	NA	NA	NA	NA
WP_166342349.1\|1575597_1575915_+	hypothetical protein	NA	NA	NA	NA
WP_166342054.1\|1576041_1577385_-\|transposase	IS1380-like element ISBdi2 family transposase	NA	NA	NA	NA
WP_166342350.1\|1577551_1578022_+	hypothetical protein	NA	NA	NA	NA
WP_166342351.1\|1578143_1579487_+\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_166342352.1\|1579899_1580334_+	hypothetical protein	NA	NA	NA	NA
WP_166342353.1\|1580320_1580668_+	hypothetical protein	NA	NA	NA	NA
WP_166342354.1\|1580658_1581120_+	hypothetical protein	NA	NA	NA	NA
WP_166342355.1\|1581178_1581343_+	hypothetical protein	NA	NA	NA	NA
WP_166342356.1\|1581472_1582270_-	hypothetical protein	NA	NA	NA	NA
WP_166342351.1\|1582923_1584267_-\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_166342357.1\|1584372_1585875_-	recombinase family protein	R9TP69	Rhizobium_phage	9.0e-104	42.0
WP_166342358.1\|1585855_1586032_-	hypothetical protein	NA	NA	NA	NA
WP_166342359.1\|1586120_1586399_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_166342360.1\|1587585_1587768_+	hypothetical protein	NA	NA	NA	NA
WP_011084514.1\|1587787_1588852_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_166342361.1\|1588891_1589230_+	hypothetical protein	NA	NA	NA	NA
WP_018272321.1\|1589355_1590699_-\|transposase	IS1380 family transposase	NA	NA	NA	NA

DBSCAN-SWA_9

1848678 : 1886879

Synechococcus_phage(16.67%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_166342351.1\|1848678_1850022_+\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_028147494.1\|1850219_1850699_+	PaaI family thioesterase	NA	NA	NA	NA
WP_166091178.1\|1850774_1851746_+	DMT family transporter	NA	NA	NA	NA
WP_011084514.1\|1853117_1854182_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_166342514.1\|1854854_1855556_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_071912382.1\|1855723_1856740_+	magnesium and cobalt transport protein CorA	NA	NA	NA	NA
WP_014494125.1\|1856753_1856993_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_008135034.1\|1857005_1857803_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	G8EYA2	Synechococcus_phage	7.3e-44	40.0
WP_014494124.1\|1858093_1858417_+	DUF1476 domain-containing protein	NA	NA	NA	NA
WP_014494123.1\|1858483_1858972_-	cyanase	NA	NA	NA	NA
WP_166342515.1\|1859061_1860630_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_166342516.1\|1860778_1861528_+	isoprenylcysteine carboxylmethyltransferase family protein	NA	NA	NA	NA
WP_166342517.1\|1861524_1862502_+	NADPH:quinone oxidoreductase family protein	NA	NA	NA	NA
WP_166342518.1\|1862535_1863285_+	hypothetical protein	NA	NA	NA	NA
WP_011084514.1\|1865020_1866085_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_166342519.1\|1866094_1867303_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_166342520.1\|1867443_1868643_-	TrmJ/YjtD family RNA methyltransferase	NA	NA	NA	NA
WP_166342521.1\|1868991_1870203_+	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA
WP_166342522.1\|1870300_1870843_+	DUF3455 domain-containing protein	NA	NA	NA	NA
WP_166342523.1\|1870847_1872074_-	cyclic nucleotide-binding domain-containing protein	NA	NA	NA	NA
WP_166342524.1\|1872080_1874759_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	3.0e-73	34.3
WP_166342525.1\|1875226_1876375_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA
WP_166342526.1\|1876385_1876754_+	glycine cleavage system protein GcvH	NA	NA	NA	NA
WP_166353249.1\|1876934_1879802_+	aminomethyl-transferring glycine dehydrogenase	M4QFZ1	Prochlorococcus_phage	5.8e-261	51.6
WP_166342527.1\|1879954_1880950_-	hypothetical protein	NA	NA	NA	NA
WP_014494106.1\|1881043_1882132_-	recombinase RecA	A0A0S2MVG1	Bacillus_phage	7.2e-119	63.3
WP_060909066.1\|1882776_1884402_-\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	9.8e-88	38.7
WP_011090953.1\|1884455_1884812_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_041483034.1\|1884808_1885087_-\|transposase	transposase	NA	NA	NA	NA
WP_166342528.1\|1885412_1885577_-	hypothetical protein	NA	NA	NA	NA
WP_166353121.1\|1885749_1886879_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	2.0e-18	33.7

DBSCAN-SWA_10

2221703 : 2329381

107

Acidithiobacillus_phage(11.54%)

integrase,protease,transposase,tail,head,portal,terminase,plate,capsid

attL 2311845:2311860|attR 2335680:2335695

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011084514.1\|2221703_2222768_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_166342815.1\|2223106_2224672_+	hypothetical protein	NA	NA	NA	NA
WP_166342817.1\|2224804_2225500_+	WbqC family protein	NA	NA	NA	NA
WP_166342819.1\|2226100_2227078_+	glycosyltransferase family 2 protein	I1TED8	Salmonella_phage	1.8e-28	31.0
WP_166342821.1\|2227074_2227722_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_166342823.1\|2227718_2228870_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_166342825.1\|2228866_2229697_+	phytanoyl-CoA dioxygenase family protein	NA	NA	NA	NA
WP_166342827.1\|2229702_2230623_-	hypothetical protein	NA	NA	NA	NA
WP_166342830.1\|2230631_2231300_-	acetyltransferase	NA	NA	NA	NA
WP_166342833.1\|2231478_2234430_-\|protease	matrixin family metalloprotease	NA	NA	NA	NA
WP_166353287.1\|2234670_2234958_+	hypothetical protein	NA	NA	NA	NA
WP_166342836.1\|2235088_2236282_+	CoA transferase	NA	NA	NA	NA
WP_166342839.1\|2238603_2240418_+	chloride channel protein	NA	NA	NA	NA
WP_011084514.1\|2240840_2241905_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_166342841.1\|2242020_2243019_+	glycosyltransferase family 2 protein	F1C5B0	Cronobacter_phage	4.6e-56	38.0
WP_166342843.1\|2243028_2243712_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_166342845.1\|2244116_2244299_-	hypothetical protein	NA	NA	NA	NA
WP_166342847.1\|2244535_2245507_+	fatty acid desaturase	NA	NA	NA	NA
WP_166342849.1\|2245503_2246505_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_166342851.1\|2246970_2247240_-	hypothetical protein	NA	NA	NA	NA
WP_166342853.1\|2247332_2248847_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA
WP_166342855.1\|2248856_2249399_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA
WP_166342857.1\|2250993_2251608_+	prepilin peptidase	NA	NA	NA	NA
WP_166342859.1\|2251972_2254432_-	hypothetical protein	NA	NA	NA	NA
WP_166342861.1\|2254781_2256842_-	modulator protein	NA	NA	NA	NA
WP_166342863.1\|2257824_2258403_-	hypothetical protein	NA	NA	NA	NA
WP_166342865.1\|2258399_2258741_-	hypothetical protein	NA	NA	NA	NA
WP_166342867.1\|2259913_2260711_-	enoyl-CoA hydratase	NA	NA	NA	NA
WP_166342869.1\|2260735_2261935_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA
WP_166342871.1\|2262050_2263334_-	MFS transporter	NA	NA	NA	NA
WP_166342873.1\|2263386_2264640_-	alanine--glyoxylate aminotransferase family protein	NA	NA	NA	NA
WP_166342875.1\|2264722_2265460_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_166342877.1\|2265564_2268540_+	FAD-binding protein	NA	NA	NA	NA
WP_166342879.1\|2268532_2268961_+	heme-binding protein	NA	NA	NA	NA
WP_028181654.1\|2270467_2271007_+	hypothetical protein	NA	NA	NA	NA
WP_166342881.1\|2271061_2271331_-	hypothetical protein	I6NSG0	Burkholderia_phage	3.0e-18	51.9
WP_166342883.1\|2271707_2272694_+	hypothetical protein	NA	NA	NA	NA
WP_155251958.1\|2273034_2273337_+	hypothetical protein	NA	NA	NA	NA
WP_028180258.1\|2273337_2274717_-	hypothetical protein	NA	NA	NA	NA
WP_035718192.1\|2274716_2274968_-	hypothetical protein	NA	NA	NA	NA
WP_166342885.1\|2275098_2275659_-	hypothetical protein	NA	NA	NA	NA
WP_166342887.1\|2275773_2276112_-	hypothetical protein	NA	NA	NA	NA
WP_028180262.1\|2276108_2276402_-	hypothetical protein	NA	NA	NA	NA
WP_028180263.1\|2276310_2276811_-	hypothetical protein	NA	NA	NA	NA
WP_166342889.1\|2276807_2277716_-	N-acetylmuramoyl-L-alanine amidase	A0A1B0T6G1	Thiobacimonas_phage	3.5e-34	38.2
WP_166353199.1\|2277785_2278835_-	hypothetical protein	R4JDM6	Burkholderia_phage	3.6e-35	31.1
WP_166342891.1\|2278852_2279059_-\|tail	phage tail protein	NA	NA	NA	NA
WP_166342171.1\|2279058_2279445_-\|tail	phage tail protein	A0A088FQM4	Escherichia_phage	3.1e-32	50.8
WP_166342894.1\|2282508_2283012_-\|tail	phage major tail tube protein	K4I1G5	Acidithiobacillus_phage	1.1e-37	45.2
WP_166342897.1\|2283024_2284434_-\|tail	phage tail sheath protein	A0A1W6JT53	Escherichia_phage	4.6e-118	48.6
WP_166342900.1\|2284515_2285010_-	hypothetical protein	NA	NA	NA	NA
WP_166342903.1\|2285000_2285618_-	hypothetical protein	NA	NA	NA	NA
WP_166342905.1\|2285617_2286520_-	hypothetical protein	A0A1X9SGY6	Bradyrhizobium_phage	9.4e-32	40.4
WP_166342907.1\|2286526_2289742_-	DUF4815 domain-containing protein	K4ICQ5	Acidithiobacillus_phage	1.2e-185	36.5
WP_166342909.1\|2289742_2290441_-	hypothetical protein	NA	NA	NA	NA
WP_038944511.1\|2290424_2291276_-	hypothetical protein	NA	NA	NA	NA
WP_166342911.1\|2291275_2292133_-\|plate	baseplate assembly protein	A0A218M4K5	Erwinia_phage	5.6e-18	31.5
WP_166342913.1\|2292132_2292546_-\|plate	phage baseplate protein	K4I3Z7	Acidithiobacillus_phage	4.5e-13	37.3
WP_028181382.1\|2292602_2293451_-	hypothetical protein	NA	NA	NA	NA
WP_166342915.1\|2293453_2293981_-	hypothetical protein	NA	NA	NA	NA
WP_166342917.1\|2293982_2294336_-	hypothetical protein	NA	NA	NA	NA
WP_166342919.1\|2294335_2294779_-	hypothetical protein	NA	NA	NA	NA
WP_166342921.1\|2294780_2295839_-\|capsid	major capsid protein	A0A2D1GMR5	Marinobacter_phage	1.8e-50	37.3
WP_166342923.1\|2295877_2296240_-\|head	head decoration protein	NA	NA	NA	NA
WP_166342925.1\|2296251_2297553_-	S49 family peptidase	A0A219Y8X7	Aeromonas_phage	2.0e-43	43.6
WP_166353289.1\|2297549_2299133_-\|portal	phage portal protein	G8DH43	Emiliania_huxleyi_virus	1.7e-89	39.8
WP_028181390.1\|2299156_2299363_-	hypothetical protein	NA	NA	NA	NA
WP_166342927.1\|2299415_2299676_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_166342929.1\|2299703_2301650_-\|terminase	phage terminase large subunit family protein	A0A2K9V3X4	Faecalibacterium_phage	1.8e-136	44.6
WP_166342931.1\|2301652_2301835_-	hypothetical protein	NA	NA	NA	NA
WP_166342933.1\|2301821_2302406_-\|terminase	terminase small subunit	A0A2D1GMW4	Marinobacter_phage	2.8e-08	32.9
WP_166342935.1\|2302408_2302990_-	deoxynucleotide monophosphate kinase	A0A1W6DX10	Sphingobium_phage	2.2e-29	44.9
WP_166342937.1\|2303576_2306447_+	hypothetical protein	NA	NA	NA	NA
WP_166342939.1\|2306564_2307206_-	hypothetical protein	NA	NA	NA	NA
WP_166342941.1\|2307205_2307583_-	hypothetical protein	NA	NA	NA	NA
WP_166342943.1\|2307710_2308601_-	DUF2971 domain-containing protein	NA	NA	NA	NA
WP_166342945.1\|2309266_2310133_-	hypothetical protein	NA	NA	NA	NA
WP_166342947.1\|2310631_2311018_+	hypothetical protein	NA	NA	NA	NA
WP_166342949.1\|2311029_2311305_+	hypothetical protein	NA	NA	NA	NA
WP_166342951.1\|2311365_2311806_+	hypothetical protein	NA	NA	NA	NA
WP_028153906.1\|2311809_2312070_+	hypothetical protein	NA	NA	NA	NA
2311845:2311860	attL	NA	NA	NA	NA
WP_060910679.1\|2312066_2312324_+	hypothetical protein	NA	NA	NA	NA
WP_038945744.1\|2312310_2312562_+	hypothetical protein	NA	NA	NA	NA
WP_038945745.1\|2312561_2312768_+	hypothetical protein	NA	NA	NA	NA
WP_028153910.1\|2312778_2313126_+	HNH endonuclease	A0A291AUJ4	Sinorhizobium_phage	5.8e-30	54.3
WP_038945746.1\|2313138_2313549_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA
WP_129557523.1\|2313685_2314096_+	hypothetical protein	NA	NA	NA	NA
WP_060910677.1\|2314212_2314464_+	hypothetical protein	NA	NA	NA	NA
WP_166342954.1\|2314836_2315046_+	hypothetical protein	NA	NA	NA	NA
WP_166342956.1\|2315062_2317570_-	bifunctional DNA primase/polymerase	A0A0S0N1T8	Pseudomonas_phage	1.4e-24	25.1
WP_166342959.1\|2317582_2317933_-	hypothetical protein	NA	NA	NA	NA
WP_035675166.1\|2317919_2318186_-	hypothetical protein	NA	NA	NA	NA
WP_166342962.1\|2318197_2320147_-	DEAD/DEAH box helicase	A0A2H4GY70	Pseudomonas_phage	2.5e-106	39.6
WP_166353291.1\|2320146_2320746_-	DNA methyltransferase	A0A1B1IT99	uncultured_Mediterranean_phage	4.2e-28	42.4
WP_166342964.1\|2320778_2321036_-	hypothetical protein	NA	NA	NA	NA
WP_166342967.1\|2321041_2322154_-	hypothetical protein	B4UTX3	Rhizobium_phage	1.4e-72	44.5
WP_166342969.1\|2322255_2322831_-	DUF669 domain-containing protein	A0A0R6PEL5	Moraxella_phage	1.7e-10	31.0
WP_166342971.1\|2322873_2323656_-	ATP-binding protein	B4UTW5	Rhizobium_phage	8.7e-50	41.6
WP_166342973.1\|2323668_2323956_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_166342975.1\|2324273_2325008_+	XRE family transcriptional regulator	NA	NA	NA	NA
WP_028153235.1\|2325111_2325513_+	hypothetical protein	A0A0K8IXN3	Cronobacter_phage	1.5e-26	61.8
WP_166342977.1\|2325574_2325871_+	hypothetical protein	NA	NA	NA	NA
WP_166342979.1\|2325867_2327022_+	DNA-directed DNA polymerase	NA	NA	NA	NA
WP_166353293.1\|2327056_2327506_+	hypothetical protein	NA	NA	NA	NA
WP_028182129.1\|2327492_2327699_+	hypothetical protein	NA	NA	NA	NA
WP_166342981.1\|2327853_2328000_+	hypothetical protein	NA	NA	NA	NA
WP_166342983.1\|2328196_2329381_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
2335680:2335695	attR	NA	NA	NA	NA

DBSCAN-SWA_11

3044912 : 3097301

Trichoplusia_ni_ascovirus(10.0%)

holin,integrase,transposase

attL 3047543:3047559|attR 3093327:3093343

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_018272321.1\|3044912_3046256_-\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_166343826.1\|3046937_3047492_+	mismatch-specific DNA-glycosylase	NA	NA	NA	NA
3047543:3047559	attL	NA	NA	NA	NA
WP_166343828.1\|3047596_3048325_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_166343831.1\|3048515_3048953_-	VOC family protein	NA	NA	NA	NA
WP_166343833.1\|3049120_3049771_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_166343835.1\|3049962_3050355_+	hypothetical protein	NA	NA	NA	NA
WP_166343837.1\|3050366_3051059_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_166343839.1\|3051169_3051604_-	hypothetical protein	NA	NA	NA	NA
WP_085405153.1\|3052062_3052446_+	RidA family protein	NA	NA	NA	NA
WP_063981484.1\|3052643_3052907_+	hypothetical protein	NA	NA	NA	NA
WP_166343841.1\|3053148_3053400_+	hypothetical protein	NA	NA	NA	NA
WP_166343843.1\|3053504_3053990_-	J domain-containing protein	NA	NA	NA	NA
WP_166343845.1\|3054101_3054869_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	2.1e-16	30.8
WP_071910270.1\|3055074_3055323_+	Fis family transcriptional regulator	NA	NA	NA	NA
WP_166343847.1\|3055436_3055940_+	collagen-like protein	NA	NA	NA	NA
WP_028152311.1\|3055936_3056176_-	hypothetical protein	NA	NA	NA	NA
WP_166343849.1\|3056271_3056538_-	DUF2277 domain-containing protein	NA	NA	NA	NA
WP_071910266.1\|3056780_3057842_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_071910264.1\|3057860_3058202_+	MmcQ/YjbR family DNA-binding protein	NA	NA	NA	NA
WP_028152315.1\|3058367_3058721_+	hypothetical protein	NA	NA	NA	NA
WP_085405162.1\|3058726_3058969_-	hypothetical protein	NA	NA	NA	NA
WP_166343851.1\|3059014_3060439_-	S8 family serine peptidase	A0A217EQY2	Bacillus_phage	3.5e-33	41.7
WP_166343853.1\|3060609_3061212_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA
WP_014492874.1\|3061384_3061873_-	bacterioferritin	NA	NA	NA	NA
WP_063981474.1\|3062004_3062277_-	bacterioferritin	NA	NA	NA	NA
WP_063981473.1\|3062870_3063197_+	hypothetical protein	NA	NA	NA	NA
WP_071910256.1\|3063408_3063690_+	hypothetical protein	NA	NA	NA	NA
WP_166343855.1\|3063789_3065016_-	lytic murein transglycosylase	NA	NA	NA	NA
WP_166102215.1\|3065023_3066673_-	energy-dependent translational throttle protein EttA	A0A2I4R674	Erysipelothrix_phage	6.1e-45	29.4
WP_028152324.1\|3066909_3067125_+	hypothetical protein	NA	NA	NA	NA
WP_166102219.1\|3067270_3068233_+	D-2-hydroxyacid dehydrogenase family protein	A0A1B1IVB5	uncultured_Mediterranean_phage	1.8e-20	31.6
WP_166343857.1\|3068289_3069486_-	L,D-transpeptidase family protein	NA	NA	NA	NA
WP_166343859.1\|3069852_3070635_+	hypothetical protein	NA	NA	NA	NA
WP_166343861.1\|3070637_3071489_-	3-mercaptopyruvate sulfurtransferase	NA	NA	NA	NA
WP_166343863.1\|3071685_3072132_-	rhodanese-like domain-containing protein	NA	NA	NA	NA
WP_166353271.1\|3072170_3073196_+\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	3.6e-11	27.4
WP_166343865.1\|3073527_3074703_-	VWA domain-containing protein	NA	NA	NA	NA
WP_166343867.1\|3074826_3075072_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_063981465.1\|3075164_3076007_+	MoxR family ATPase	NA	NA	NA	NA
WP_166343869.1\|3076073_3078245_-	hypothetical protein	NA	NA	NA	NA
WP_166343871.1\|3079063_3079375_+	hypothetical protein	NA	NA	NA	NA
WP_166343873.1\|3079554_3080517_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_166343875.1\|3080513_3081314_+	hypothetical protein	NA	NA	NA	NA
WP_166343877.1\|3081365_3081638_+	hypothetical protein	NA	NA	NA	NA
WP_166343879.1\|3081658_3081940_+	hypothetical protein	NA	NA	NA	NA
WP_166343881.1\|3082089_3082659_+	hypothetical protein	NA	NA	NA	NA
WP_166343883.1\|3082658_3082982_+	hypothetical protein	NA	NA	NA	NA
WP_166343885.1\|3083016_3083280_+	hypothetical protein	NA	NA	NA	NA
WP_166343887.1\|3083509_3084691_-	His-Xaa-Ser system radical SAM maturase HxsC	S5WIP3	Leptospira_phage	9.7e-69	43.5
WP_109866565.1\|3085448_3086578_-\|transposase	IS3-like element ISRj2 family transposase	U5P429	Shigella_phage	1.1e-18	33.7
WP_166343889.1\|3087852_3088515_+	hypothetical protein	NA	NA	NA	NA
WP_166343891.1\|3088566_3089298_+	TIGR02391 family protein	C7BGE5	Burkholderia_phage	1.1e-41	42.0
WP_166343893.1\|3089530_3089935_+	hypothetical protein	NA	NA	NA	NA
WP_166343895.1\|3089963_3090527_+	transcriptional regulator	NA	NA	NA	NA
WP_166343897.1\|3090609_3092055_-\|integrase	site-specific integrase	A0A1X9SGU9	Bradyrhizobium_phage	2.9e-43	32.0
WP_166343899.1\|3092842_3093322_-	hypothetical protein	NA	NA	NA	NA
WP_166343901.1\|3093406_3093712_-	hypothetical protein	NA	NA	NA	NA
3093327:3093343	attR	NA	NA	NA	NA
WP_166343903.1\|3093823_3095470_-\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	6.7e-52	30.4
WP_166343905.1\|3095489_3096083_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_026192128.1\|3096236_3097301_+\|transposase	IS630 family transposase	NA	NA	NA	NA

DBSCAN-SWA_12

3921187 : 3994313

Shigella_phage(28.57%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011084514.1\|3921187_3922252_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_166344833.1\|3922481_3924143_-	thiamine pyrophosphate-binding protein	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	1.4e-20	24.8
WP_166344835.1\|3924225_3924726_+	TfoX/Sxy family protein	NA	NA	NA	NA
WP_166344838.1\|3924679_3925186_-	GFA family protein	NA	NA	NA	NA
WP_166344840.1\|3925412_3926540_-	alkene reductase	NA	NA	NA	NA
WP_166344843.1\|3926659_3928156_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_166344846.1\|3928339_3929185_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_014491844.1\|3929344_3929551_-	hypothetical protein	NA	NA	NA	NA
WP_028147928.1\|3929624_3930038_-	Rieske (2Fe-2S) protein	NA	NA	NA	NA
WP_166344849.1\|3930059_3931172_-	amidohydrolase	NA	NA	NA	NA
WP_166344852.1\|3931243_3932305_-	amidohydrolase	NA	NA	NA	NA
WP_014491840.1\|3932566_3932842_-	hypothetical protein	NA	NA	NA	NA
WP_071909451.1\|3932882_3933578_-	PspA/IM30 family protein	NA	NA	NA	NA
WP_166344854.1\|3933681_3934290_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_166344856.1\|3934404_3935859_+	dihydropyrimidinase	NA	NA	NA	NA
WP_166344858.1\|3935866_3936616_-	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	7.3e-22	32.3
WP_166344860.1\|3936720_3937398_-	AhpC/TSA family protein	NA	NA	NA	NA
WP_166344862.1\|3938461_3940084_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_166344865.1\|3940059_3941421_-	glycoside hydrolase family 3 protein	NA	NA	NA	NA
WP_166344867.1\|3943286_3944507_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_028144087.1\|3944503_3945367_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_020607990.1\|3945858_3946053_-	hypothetical protein	NA	NA	NA	NA
WP_166344869.1\|3947201_3948977_-	FAD-dependent oxidoreductase	A0A2P0ZL82	Lactobacillus_phage	1.3e-24	26.6
WP_166344871.1\|3948973_3949834_-	phosphoenolpyruvate hydrolase family protein	NA	NA	NA	NA
WP_166344873.1\|3949826_3950996_-	hypothetical protein	NA	NA	NA	NA
WP_166344875.1\|3951589_3952303_+	hypothetical protein	NA	NA	NA	NA
WP_166344877.1\|3952307_3954167_-	sigma 54-interacting transcriptional regulator	NA	NA	NA	NA
WP_166344879.1\|3954120_3955233_-	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	G9BWD6	Planktothrix_phage	2.3e-24	36.0
WP_166344881.1\|3955232_3956060_-	HAD family hydrolase	NA	NA	NA	NA
WP_166344884.1\|3956052_3956823_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_018645268.1\|3956819_3957761_-	ribokinase	NA	NA	NA	NA
WP_166344887.1\|3957757_3958618_-	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_166344890.1\|3958630_3959593_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_018645270.1\|3959662_3960973_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_161966258.1\|3961406_3961625_+	hypothetical protein	NA	NA	NA	NA
WP_166344893.1\|3963544_3964357_+	hypothetical protein	NA	NA	NA	NA
WP_166344896.1\|3964299_3965544_+	hypothetical protein	NA	NA	NA	NA
WP_166344899.1\|3965936_3966341_+	hypothetical protein	NA	NA	NA	NA
WP_166344902.1\|3966341_3966683_+	hypothetical protein	NA	NA	NA	NA
WP_157790378.1\|3968304_3969060_+	hypothetical protein	NA	NA	NA	NA
WP_166344905.1\|3968983_3970207_+	hypothetical protein	NA	NA	NA	NA
WP_166353402.1\|3971172_3972627_-	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_011084685.1\|3975063_3975825_-	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_011084684.1\|3976949_3977564_-	J domain-containing protein	NA	NA	NA	NA
WP_028182271.1\|3978970_3980308_+	hypothetical protein	NA	NA	NA	NA
WP_082755540.1\|3980990_3981407_+	SET domain-containing protein	NA	NA	NA	NA
WP_166353404.1\|3982140_3983270_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	9.7e-18	33.1
WP_018273862.1\|3983540_3984890_-\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_109866544.1\|3984964_3985725_-\|transposase	IS5 family transposase	A0A0N9SJT9	Paenibacillus_phage	3.6e-08	35.5
WP_026192128.1\|3985960_3987025_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_011084678.1\|3987227_3989036_+	outer membrane beta-barrel protein	NA	NA	NA	NA
WP_011084675.1\|3991192_3991768_-	hypothetical protein	NA	NA	NA	NA
WP_166353406.1\|3993183_3994313_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	9.4e-21	33.3

DBSCAN-SWA_13

4002044 : 4072725

Stx2-converting_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041482620.1\|4002044_4003670_+\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	9.8e-88	38.7
WP_011084662.1\|4004688_4004982_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_166344911.1\|4005124_4006135_+\|transposase	IS481 family transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	2.5e-126	66.2
WP_035680466.1\|4006465_4008709_-	hypothetical protein	NA	NA	NA	NA
WP_011084659.1\|4009135_4010377_-	cytochrome P450	NA	NA	NA	NA
WP_011084658.1\|4010927_4011809_-	pantoate--beta-alanine ligase	NA	NA	NA	NA
WP_166353408.1\|4011993_4013379_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_014497924.1\|4014868_4015777_+	hypothetical protein	NA	NA	NA	NA
WP_011084653.1\|4016239_4016674_-	VirK protein	NA	NA	NA	NA
WP_011084514.1\|4016934_4017999_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_166344914.1\|4018146_4019490_-\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_035678039.1\|4020027_4021095_+	hypothetical protein	NA	NA	NA	NA
WP_011084649.1\|4023108_4023798_+	response regulator transcription factor	NA	NA	NA	NA
WP_018647881.1\|4023824_4025279_+	type II and III secretion system protein family protein	NA	NA	NA	NA
WP_166344917.1\|4025289_4025952_+	hypothetical protein	NA	NA	NA	NA
WP_011084646.1\|4026147_4028463_+	hypothetical protein	NA	NA	NA	NA
WP_166344920.1\|4028755_4030138_-	group II intron reverse transcriptase/maturase	H7BVN7	unidentified_phage	1.4e-13	32.0
WP_018273742.1\|4030662_4031019_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_035681142.1\|4031069_4032620_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	9.0e-83	38.9
WP_018273740.1\|4032667_4033267_+	UPF0149 family protein	NA	NA	NA	NA
WP_014497929.1\|4034840_4035551_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	4.8e-63	53.6
WP_011084638.1\|4039033_4039240_-	hypothetical protein	NA	NA	NA	NA
WP_011084637.1\|4040075_4040477_-	hypothetical protein	NA	NA	NA	NA
WP_166344923.1\|4042132_4043164_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_026192128.1\|4044943_4046008_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_166344926.1\|4046116_4046876_+\|transposase	IS5 family transposase	A0A0N9SJT9	Paenibacillus_phage	6.1e-08	35.5
WP_011084630.1\|4046886_4047924_-	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA
WP_011084629.1\|4047920_4048742_-	type III secretion system export apparatus protein SctT	NA	NA	NA	NA
WP_011084628.1\|4048752_4049028_-	translocation protein	NA	NA	NA	NA
WP_011084627.1\|4049030_4049696_-	type III secretion system export apparatus protein SctR	NA	NA	NA	NA
WP_011084626.1\|4049688_4050810_-	type III secretion system cytoplasmic ring protein SctQ	NA	NA	NA	NA
WP_011084625.1\|4050806_4051343_-	hypothetical protein	NA	NA	NA	NA
WP_011084624.1\|4051318_4052674_-	type III secretion system ATPase SctN	NA	NA	NA	NA
WP_011084623.1\|4052670_4053291_-	type III secretion system stator protein SctL	NA	NA	NA	NA
WP_011084622.1\|4053287_4053926_-	nodulation protein	NA	NA	NA	NA
WP_166344929.1\|4053937_4054801_-	type III secretion inner membrane ring lipoprotein SctJ	NA	NA	NA	NA
WP_166353410.1\|4054809_4055289_-	nodulation protein NolB	NA	NA	NA	NA
WP_035668374.1\|4055564_4056185_+	nodulation protein NolW	NA	NA	NA	NA
WP_161966260.1\|4056741_4056918_-	hypothetical protein	NA	NA	NA	NA
WP_011084616.1\|4057334_4057538_+	hypothetical protein	NA	NA	NA	NA
WP_039156390.1\|4058108_4059173_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_080677780.1\|4060482_4061043_+	hypothetical protein	NA	NA	NA	NA
WP_166344932.1\|4061140_4061449_+	hypothetical protein	NA	NA	NA	NA
WP_014497948.1\|4061491_4061683_+	hypothetical protein	NA	NA	NA	NA
WP_011084612.1\|4061799_4062693_+	hypothetical protein	NA	NA	NA	NA
WP_011084611.1\|4062726_4063263_+	hypothetical protein	NA	NA	NA	NA
WP_011084610.1\|4063265_4063694_+	hypothetical protein	NA	NA	NA	NA
WP_011084609.1\|4063703_4065803_+	type III secretion system export apparatus subunit SctV	NA	NA	NA	NA
WP_011084608.1\|4065833_4066424_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_011084606.1\|4066990_4067413_+	hypothetical protein	NA	NA	NA	NA
WP_080586761.1\|4068527_4069874_+	insulinase family protein	A0A2P1EIE5	Megavirus	1.4e-18	22.2
WP_166353121.1\|4071596_4072725_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	2.0e-18	33.7

DBSCAN-SWA_14

4119030 : 4167226

Acidithiobacillus_phage(40.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_109866565.1\|4119030_4120160_-\|transposase	IS3-like element ISRj2 family transposase	U5P429	Shigella_phage	1.1e-18	33.7
WP_011084541.1\|4121007_4121349_-	hydrogenase maturation nickel metallochaperone HypA	NA	NA	NA	NA
WP_011084538.1\|4122532_4123084_-	hydrogenase expression/formation protein	NA	NA	NA	NA
WP_011084536.1\|4123961_4124252_-	HypC/HybG/HupF family hydrogenase formation chaperone	NA	NA	NA	NA
WP_011084514.1\|4125157_4126222_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_166344949.1\|4128501_4129593_-	hydrogenase small subunit	NA	NA	NA	NA
WP_011084529.1\|4131957_4133274_+	C4-dicarboxylate transporter DctA	NA	NA	NA	NA
WP_011084514.1\|4133396_4134461_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_011084496.1\|4134966_4135257_+	DUF2274 domain-containing protein	NA	NA	NA	NA
WP_011084497.1\|4135253_4135568_-	hypothetical protein	NA	NA	NA	NA
WP_014498007.1\|4136503_4136692_+	hypothetical protein	NA	NA	NA	NA
WP_035668747.1\|4137017_4138397_+	aspartate aminotransferase family protein	NA	NA	NA	NA
WP_166344952.1\|4139121_4139625_-	type II toxin-antitoxin system YhaV family toxin	NA	NA	NA	NA
WP_014498004.1\|4139621_4139963_-	type II toxin-antitoxin system PrlF family antitoxin	NA	NA	NA	NA
WP_166344955.1\|4142159_4142891_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.9e-62	53.1
WP_035680720.1\|4146540_4146798_-	WGR domain-containing protein	NA	NA	NA	NA
WP_014497999.1\|4147367_4147589_+	hypothetical protein	NA	NA	NA	NA
WP_011084509.1\|4148110_4148455_-	hypothetical protein	NA	NA	NA	NA
WP_011090953.1\|4149000_4149357_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_166344958.1\|4149410_4150958_+\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	1.4e-83	38.2
WP_035666406.1\|4152202_4152403_+	hypothetical protein	NA	NA	NA	NA
WP_011084514.1\|4152445_4153510_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_011084515.1\|4153557_4155354_-	recombinase family protein	NA	NA	NA	NA
WP_166344961.1\|4155773_4158026_+	hypothetical protein	NA	NA	NA	NA
WP_166344964.1\|4158298_4162840_+	hypothetical protein	NA	NA	NA	NA
WP_011084521.1\|4163297_4163876_+	hypothetical protein	NA	NA	NA	NA
WP_014497929.1\|4163906_4164617_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	4.8e-63	53.6
WP_038968105.1\|4165957_4167226_+\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	5.5e-94	46.2

DBSCAN-SWA_15

4172723 : 4318312

Paenibacillus_phage(19.05%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011084514.1\|4172723_4173788_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_018273862.1\|4173837_4175187_-\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_085964990.1\|4175261_4176022_-\|transposase	IS5 family transposase	A0A0N9SJT9	Paenibacillus_phage	1.0e-07	35.5
WP_011084494.1\|4176187_4176850_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_166344970.1\|4176846_4177362_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_166344973.1\|4178020_4179883_-	hypothetical protein	NA	NA	NA	NA
WP_080586833.1\|4182526_4182736_-	hypothetical protein	NA	NA	NA	NA
WP_028144459.1\|4183291_4183792_-	hypothetical protein	NA	NA	NA	NA
WP_014498022.1\|4186382_4187147_-	TatD family hydrolase	NA	NA	NA	NA
WP_014498023.1\|4187143_4188418_-	hypothetical protein	NA	NA	NA	NA
WP_014498024.1\|4188414_4189296_-	hypothetical protein	NA	NA	NA	NA
WP_028160578.1\|4189276_4191157_-	ATPase	NA	NA	NA	NA
WP_166341218.1\|4193136_4194678_+\|transposase	IS21-like element ISFK1 family transposase	K4I413	Acidithiobacillus_phage	6.0e-127	44.3
WP_166344976.1\|4195493_4195691_+	hypothetical protein	NA	NA	NA	NA
WP_014498028.1\|4195727_4196933_-	hypothetical protein	NA	NA	NA	NA
WP_166344979.1\|4196929_4200430_-	AAA family ATPase	NA	NA	NA	NA
WP_166344982.1\|4200426_4201068_-	DUF4194 domain-containing protein	NA	NA	NA	NA
WP_166344985.1\|4201057_4202473_-	hypothetical protein	NA	NA	NA	NA
WP_166344988.1\|4202686_4206022_-	UvrD-helicase domain-containing protein	NA	NA	NA	NA
WP_166344991.1\|4206018_4208673_-	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA
WP_166344994.1\|4208947_4211185_-	DEAD/DEAH box helicase	NA	NA	NA	NA
WP_166344997.1\|4211153_4212488_-	ATP-binding protein	NA	NA	NA	NA
WP_166345000.1\|4212484_4214857_-	hypothetical protein	NA	NA	NA	NA
WP_166353416.1\|4215021_4215237_-	hypothetical protein	NA	NA	NA	NA
WP_166345003.1\|4215431_4215971_+	hypothetical protein	NA	NA	NA	NA
WP_166345006.1\|4215975_4216836_+	metallophosphoesterase	A0A126HHR4	Vibrio_phage	1.2e-12	32.1
WP_166345009.1\|4216919_4217516_+	hypothetical protein	NA	NA	NA	NA
WP_166345012.1\|4217512_4218274_+	hypothetical protein	NA	NA	NA	NA
WP_166345015.1\|4218276_4218543_+	hypothetical protein	NA	NA	NA	NA
WP_166345018.1\|4218952_4219678_+	hypothetical protein	NA	NA	NA	NA
WP_166345021.1\|4219686_4222167_+\|transposase	transposase family protein	NA	NA	NA	NA
WP_166345024.1\|4222163_4222577_+	hypothetical protein	NA	NA	NA	NA
WP_166345027.1\|4222579_4223194_+	AAA family ATPase	NA	NA	NA	NA
WP_166345030.1\|4223256_4224495_+	hypothetical protein	NA	NA	NA	NA
WP_014498031.1\|4225149_4225596_+	hypothetical protein	NA	NA	NA	NA
WP_166353418.1\|4225997_4226750_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_166345033.1\|4227630_4227873_+	hypothetical protein	NA	NA	NA	NA
WP_035668701.1\|4227932_4228133_-	hypothetical protein	NA	NA	NA	NA
WP_166353263.1\|4229500_4230802_-	group II intron reverse transcriptase/maturase	H7BVN0	unidentified_phage	8.9e-07	29.0
WP_049808069.1\|4231358_4232681_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.8e-31	30.1
WP_166345036.1\|4233104_4233377_-\|transposase	transposase	NA	NA	NA	NA
WP_018273734.1\|4233578_4234598_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_011084471.1\|4235041_4235848_-	hypothetical protein	NA	NA	NA	NA
WP_014498036.1\|4237284_4237584_+	hypothetical protein	A0A291AUP1	Sinorhizobium_phage	4.1e-08	34.7
WP_011084467.1\|4238212_4238416_+	hypothetical protein	NA	NA	NA	NA
WP_018273742.1\|4238971_4239328_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_035681142.1\|4239378_4240929_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	9.0e-83	38.9
WP_018273740.1\|4240976_4241576_+	UPF0149 family protein	NA	NA	NA	NA
WP_028154393.1\|4242298_4243825_-	DUF1521 domain-containing protein	NA	NA	NA	NA
WP_038951335.1\|4244724_4246074_+\|transposase	IS701-like element ISBj6 family transposase	NA	NA	NA	NA
WP_085971921.1\|4246123_4246884_-\|transposase	IS5-like element ISBj2 family transposase	A0A0N9SJT9	Paenibacillus_phage	3.6e-08	35.5
WP_011084447.1\|4246960_4248787_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	A7IW18	Paramecium_bursaria_Chlorella_virus	1.2e-105	40.0
WP_014498053.1\|4250119_4251205_+	GDP-mannose 4,6-dehydratase	M1HGM9	Acanthocystis_turfacea_Chlorella_virus	3.7e-131	64.7
WP_011084445.1\|4251176_4252184_+	GDP-L-fucose synthase	M1I5W5	Acanthocystis_turfacea_Chlorella_virus	3.7e-85	51.7
WP_028153850.1\|4252458_4255575_-	MMPL family transporter	NA	NA	NA	NA
WP_018272321.1\|4258169_4259513_+\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_166345039.1\|4259663_4260074_-	hypothetical protein	NA	NA	NA	NA
WP_166353121.1\|4261232_4262361_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	2.0e-18	33.7
WP_166345042.1\|4265303_4265489_-	hypothetical protein	NA	NA	NA	NA
WP_011084436.1\|4265731_4265968_-	DUF2274 domain-containing protein	NA	NA	NA	NA
WP_166353263.1\|4268305_4269607_-	group II intron reverse transcriptase/maturase	H7BVN0	unidentified_phage	8.9e-07	29.0
WP_049808069.1\|4270163_4271486_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.8e-31	30.1
WP_028153782.1\|4272359_4272542_-	hypothetical protein	NA	NA	NA	NA
WP_028153781.1\|4272837_4274565_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.0e-15	29.8
WP_166345045.1\|4274561_4275443_-	ABC transporter permease	NA	NA	NA	NA
WP_166345048.1\|4275439_4276402_-	ABC transporter permease	NA	NA	NA	NA
WP_028153779.1\|4276398_4278087_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_166345051.1\|4278118_4279486_-	NtaA/DmoA family FMN-dependent monooxygenase	NA	NA	NA	NA
WP_028153778.1\|4282165_4282657_+	hypothetical protein	NA	NA	NA	NA
WP_080586945.1\|4286017_4286167_-	Flp family type IVb pilin	NA	NA	NA	NA
WP_018273862.1\|4286373_4287723_-\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_166345054.1\|4288082_4289039_-	prolyl aminopeptidase	NA	NA	NA	NA
WP_166345057.1\|4289226_4290519_+\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_085971921.1\|4290568_4291329_-\|transposase	IS5-like element ISBj2 family transposase	A0A0N9SJT9	Paenibacillus_phage	3.6e-08	35.5
WP_166345060.1\|4292368_4293433_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_028150881.1\|4294179_4294359_+	hypothetical protein	NA	NA	NA	NA
WP_028150883.1\|4295209_4295467_+	hypothetical protein	NA	NA	NA	NA
WP_166345063.1\|4295998_4296232_-	hypothetical protein	NA	NA	NA	NA
WP_131233107.1\|4296725_4296929_+	hypothetical protein	NA	NA	NA	NA
WP_162136486.1\|4298834_4299047_+	hypothetical protein	NA	NA	NA	NA
WP_166345066.1\|4300577_4302281_+	recombinase family protein	A0A2P1JU08	Anoxybacillus_phage	4.7e-16	23.4
WP_166345069.1\|4302411_4303326_-	metallophosphoesterase	NA	NA	NA	NA
WP_063981038.1\|4303478_4304531_-	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	2.1e-06	30.8
WP_166345072.1\|4304527_4305058_-	hypothetical protein	NA	NA	NA	NA
WP_063981036.1\|4305054_4305672_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_028157463.1\|4305668_4306196_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA
WP_166345075.1\|4306418_4307165_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_166345078.1\|4307379_4309128_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	7.5e-09	36.1
WP_166345081.1\|4309236_4310661_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	2.0e-07	35.0
WP_071916645.1\|4311591_4312062_+	(2Fe-2S)-binding protein	NA	NA	NA	NA
WP_166345083.1\|4312070_4314239_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA
WP_166345086.1\|4314235_4315579_+	cytochrome c	NA	NA	NA	NA
WP_085971921.1\|4317552_4318312_+\|transposase	IS5-like element ISBj2 family transposase	A0A0N9SJT9	Paenibacillus_phage	3.6e-08	35.5

DBSCAN-SWA_16

4801780 : 4952297

120

Bacillus_virus(13.04%)

integrase,protease,transposase

attL 4807068:4807127|attR 4925438:4925452

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_166345869.1\|4801780_4802473_-\|protease	AprI/Inh family metalloprotease inhibitor	NA	NA	NA	NA
WP_085402676.1\|4802472_4803462_-	2-hydroxyacid dehydrogenase	M1H502	Paramecium_bursaria_Chlorella_virus	1.5e-14	26.4
WP_166345872.1\|4803461_4804280_-	ABC transporter permease	NA	NA	NA	NA
WP_063980698.1\|4804276_4805092_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	5.0e-24	33.3
WP_166345875.1\|4805102_4806125_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_166345878.1\|4806264_4807071_+	creatininase family protein	NA	NA	NA	NA
4807068:4807127	attL	NA	NA	NA	NA
WP_026192128.1\|4807080_4808145_-\|transposase	IS630 family transposase	NA	NA	NA	NA
4807068:4807127	attL	NA	NA	NA	NA
WP_063980696.1\|4808330_4808594_+	hypothetical protein	NA	NA	NA	NA
WP_166345881.1\|4808990_4810958_+	outer membrane beta-barrel protein	NA	NA	NA	NA
WP_166345884.1\|4810986_4812720_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_166345887.1\|4812733_4814047_+	nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	4.0e-31	37.0
WP_166353460.1\|4814157_4815453_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_028159962.1\|4815526_4815766_-	PilZ domain-containing protein	NA	NA	NA	NA
WP_166353461.1\|4815867_4817493_-	FMN-binding glutamate synthase family protein	NA	NA	NA	NA
WP_166345889.1\|4817695_4818571_-	patatin-like phospholipase family protein	NA	NA	NA	NA
WP_014490313.1\|4818953_4819727_-	ferredoxin--NADP reductase	NA	NA	NA	NA
WP_166345891.1\|4820101_4820899_+	RimK-like protein	NA	NA	NA	NA
WP_071916215.1\|4821004_4821937_-\|transposase	IS110 family transposase	Q75QL1	Wolbachia_phage	1.8e-25	30.5
WP_063980690.1\|4822216_4823137_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_063980689.1\|4823149_4824445_-	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA
WP_166345893.1\|4824655_4825657_+	NADP-dependent oxidoreductase	NA	NA	NA	NA
WP_166345895.1\|4825893_4826676_+	hypothetical protein	NA	NA	NA	NA
WP_028148322.1\|4826803_4827019_+	hypothetical protein	NA	NA	NA	NA
WP_166345897.1\|4827206_4828346_+	monooxygenase	NA	NA	NA	NA
WP_166345899.1\|4828342_4829956_+	benzoate-CoA ligase family protein	A0A2H4PQU7	Staphylococcus_phage	2.9e-39	31.4
WP_166345901.1\|4830095_4830608_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_166345903.1\|4830597_4831230_-	maleylacetoacetate isomerase	NA	NA	NA	NA
WP_166345905.1\|4831376_4832417_+	gentisate 1,2-dioxygenase	NA	NA	NA	NA
WP_085398808.1\|4832531_4833350_-	ABC transporter permease	NA	NA	NA	NA
WP_166345907.1\|4833342_4834116_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.6e-30	34.9
WP_166345909.1\|4834291_4835296_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_166345911.1\|4835341_4836709_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_166345913.1\|4836819_4837704_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_166345915.1\|4839802_4840792_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA
WP_166353463.1\|4841018_4841240_+	hypothetical protein	NA	NA	NA	NA
WP_166345917.1\|4841251_4842055_-	enoyl-CoA hydratase	NA	NA	NA	NA
WP_166353464.1\|4842214_4843189_+	ketopantoate reductase family protein	NA	NA	NA	NA
WP_166345919.1\|4843192_4843870_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_166345921.1\|4843998_4845144_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_166345923.1\|4845150_4846125_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_166345925.1\|4846283_4847108_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_085398819.1\|4847206_4848817_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_063980668.1\|4848853_4849993_-	amidohydrolase/deacetylase family metallohydrolase	NA	NA	NA	NA
WP_166345927.1\|4850363_4850852_+	BA14K family protein	NA	NA	NA	NA
WP_166345930.1\|4852100_4853156_+\|integrase	integrase family protein	NA	NA	NA	NA
WP_166345933.1\|4853883_4854327_+	hypothetical protein	NA	NA	NA	NA
WP_166345936.1\|4854400_4856440_+	ATP-binding protein	NA	NA	NA	NA
WP_166345939.1\|4856475_4856721_-	hypothetical protein	NA	NA	NA	NA
WP_166345942.1\|4856947_4857805_+	hypothetical protein	NA	NA	NA	NA
WP_166345945.1\|4859943_4861197_+	group II intron reverse transcriptase/maturase	NA	NA	NA	NA
WP_166345948.1\|4861974_4862727_-	hypothetical protein	NA	NA	NA	NA
WP_166345951.1\|4862794_4863469_-	hypothetical protein	NA	NA	NA	NA
WP_166345954.1\|4864481_4866728_+	AAA family ATPase	NA	NA	NA	NA
WP_166345957.1\|4867924_4868716_-\|protease	YopT-type cysteine protease domain-containing protein	NA	NA	NA	NA
WP_166345960.1\|4870651_4871452_-	hypothetical protein	NA	NA	NA	NA
WP_166345963.1\|4871711_4872572_-	AAA family ATPase	NA	NA	NA	NA
WP_166345966.1\|4872558_4873080_-	hypothetical protein	NA	NA	NA	NA
WP_166345969.1\|4873076_4873685_-	hypothetical protein	NA	NA	NA	NA
WP_166353466.1\|4874040_4874286_-	helix-turn-helix transcriptional regulator	K7PH71	Enterobacterial_phage	4.5e-05	45.3
WP_026192128.1\|4875118_4876183_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_166345972.1\|4876206_4876554_+	DUF4102 domain-containing protein	NA	NA	NA	NA
WP_166345975.1\|4876732_4877365_+\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	1.2e-09	30.4
4876137:4877261	attR	NA	NA	NA	NA
WP_166345978.1\|4877905_4878373_+	hypothetical protein	NA	NA	NA	NA
4876137:4877261	attR	NA	NA	NA	NA
WP_166345981.1\|4878356_4878917_+	hypothetical protein	NA	NA	NA	NA
WP_166345984.1\|4879675_4880212_+	hypothetical protein	NA	NA	NA	NA
WP_166340964.1\|4880208_4880649_+	hypothetical protein	NA	NA	NA	NA
WP_166353468.1\|4880759_4881242_+	hypothetical protein	NA	NA	NA	NA
WP_166345987.1\|4881258_4882608_+	cytochrome P460 family protein	NA	NA	NA	NA
WP_166345990.1\|4882634_4883840_+	DegT/DnrJ/EryC1/StrS family aminotransferase	A0A2K9L470	Tupanvirus	4.2e-27	30.3
WP_166345992.1\|4883860_4884985_-	DEAD/DEAH box helicase family protein	NA	NA	NA	NA
WP_166345995.1\|4885005_4885236_+	hypothetical protein	NA	NA	NA	NA
WP_100214066.1\|4886083_4887841_-\|transposase	IS21-like element IS1631 family transposase	NA	NA	NA	NA
WP_166353469.1\|4888440_4889742_-	group II intron reverse transcriptase/maturase	H7BVN0	unidentified_phage	8.9e-07	29.0
WP_166353263.1\|4890384_4891686_-	group II intron reverse transcriptase/maturase	H7BVN0	unidentified_phage	8.9e-07	29.0
WP_166345998.1\|4892241_4893564_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	8.1e-32	30.5
WP_166346001.1\|4894251_4898124_+	hypothetical protein	NA	NA	NA	NA
WP_166346004.1\|4898174_4899206_+	hypothetical protein	NA	NA	NA	NA
WP_166346007.1\|4900520_4901192_-	hypothetical protein	NA	NA	NA	NA
WP_166346010.1\|4901252_4901924_-	hypothetical protein	NA	NA	NA	NA
WP_166346013.1\|4902159_4902669_-	hypothetical protein	NA	NA	NA	NA
WP_166346016.1\|4902665_4903025_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_166346019.1\|4903576_4903987_+	hypothetical protein	NA	NA	NA	NA
WP_166346022.1\|4904324_4905596_+	metallophosphoesterase	NA	NA	NA	NA
WP_085967151.1\|4905631_4906761_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	7.2e-21	33.3
WP_166346025.1\|4906960_4907908_+	hypothetical protein	NA	NA	NA	NA
WP_166346028.1\|4908253_4909636_-	hypothetical protein	A0A1P8DJJ9	Virus_Rctr41k	5.9e-17	29.7
WP_166346031.1\|4909878_4911609_-	recombinase family protein	A0A2K9V2Y5	Faecalibacterium_phage	4.9e-13	23.2
WP_166346034.1\|4911677_4911878_-	hypothetical protein	NA	NA	NA	NA
WP_166346037.1\|4912358_4913384_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_161536477.1\|4913582_4914608_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_166346040.1\|4916007_4916430_+\|transposase	transposase	NA	NA	NA	NA
WP_166346043.1\|4916556_4917570_-\|integrase	site-specific integrase	A0A142F1N9	Bacillus_phage	1.9e-12	24.0
WP_166346046.1\|4917566_4917848_-	hypothetical protein	NA	NA	NA	NA
WP_166346049.1\|4917907_4918480_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_166353471.1\|4918479_4919718_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_166346052.1\|4921434_4922298_-\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	1.0e-30	31.8
WP_166345998.1\|4922786_4924109_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	8.1e-32	30.5
WP_166346055.1\|4924316_4924754_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_166353121.1\|4925527_4926656_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	2.0e-18	33.7
WP_166346060.1\|4927734_4928337_+	plasmid pRiA4b ORF-3 family protein	NA	NA	NA	NA
WP_166346063.1\|4928463_4929732_-\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	1.6e-90	45.4
WP_166346066.1\|4930169_4930559_+	hypothetical protein	NA	NA	NA	NA
WP_166346069.1\|4930574_4932845_-	hypothetical protein	NA	NA	NA	NA
WP_166346071.1\|4932837_4933674_-	hypothetical protein	NA	NA	NA	NA
WP_166346074.1\|4933880_4935818_-	hypothetical protein	NA	NA	NA	NA
WP_166346077.1\|4936003_4936969_-	hypothetical protein	NA	NA	NA	NA
WP_166346080.1\|4937110_4939699_-	hypothetical protein	NA	NA	NA	NA
WP_166346083.1\|4939894_4940368_+	TIR domain-containing protein	NA	NA	NA	NA
WP_166346086.1\|4940374_4941007_+	hypothetical protein	NA	NA	NA	NA
WP_166346089.1\|4941112_4942195_+	pyrophosphatase	NA	NA	NA	NA
WP_166346092.1\|4942191_4942875_+	uracil-DNA glycosylase	NA	NA	NA	NA
WP_166346095.1\|4943491_4943965_+\|transposase	transposase	A0A0P0ZBP6	Stx2-converting_phage	2.1e-06	60.5
WP_166346098.1\|4943945_4944362_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	5.0e-12	47.9
WP_166346101.1\|4944970_4946131_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_166353473.1\|4947711_4948041_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_166346104.1\|4948693_4949458_+	porin family protein	NA	NA	NA	NA
WP_166340966.1\|4949521_4949917_-	hypothetical protein	NA	NA	NA	NA
WP_166346107.1\|4949969_4950344_+	hypothetical protein	A0A2H4JDW3	uncultured_Caudovirales_phage	1.3e-14	54.0
WP_166346109.1\|4950986_4951145_-	DUF3768 domain-containing protein	NA	NA	NA	NA
WP_166346112.1\|4951157_4952297_+\|transposase	IS110 family transposase	NA	NA	NA	NA

DBSCAN-SWA_17

6484832 : 6510308

Acidithiobacillus_phage(22.22%)

integrase,transposase

attL 6483683:6483697|attR 6510676:6510690

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
6483683:6483697	attL	NA	NA	NA	NA
WP_166348574.1\|6484832_6485870_-\|integrase	tyrosine-type recombinase/integrase	A0A1S7FYW5	Listeria_phage	9.2e-07	26.1
WP_085971921.1\|6486214_6486975_-\|transposase	IS5-like element ISBj2 family transposase	A0A0N9SJT9	Paenibacillus_phage	3.6e-08	35.5
WP_018273742.1\|6487504_6487861_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_035681142.1\|6487911_6489462_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	9.0e-83	38.9
WP_018273740.1\|6489509_6490109_+	UPF0149 family protein	NA	NA	NA	NA
WP_166348577.1\|6490269_6490842_+	hypothetical protein	NA	NA	NA	NA
WP_166348580.1\|6490980_6492000_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA
WP_166348583.1\|6491989_6494101_+	hypothetical protein	A0A2H4J1M0	uncultured_Caudovirales_phage	1.9e-30	25.3
WP_166348586.1\|6494476_6494905_-	hypothetical protein	NA	NA	NA	NA
WP_166348589.1\|6495072_6495939_-	hypothetical protein	NA	NA	NA	NA
WP_166348592.1\|6496427_6497861_-\|transposase	IS4 family transposase	Q9JMP3	Wolbachia_phage	2.1e-65	35.4
WP_166348595.1\|6497921_6498215_-	hypothetical protein	NA	NA	NA	NA
WP_166353581.1\|6498329_6498575_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_166348598.1\|6498582_6498912_-	DUF3768 domain-containing protein	NA	NA	NA	NA
WP_166348601.1\|6498998_6499508_-	hypothetical protein	NA	NA	NA	NA
WP_166348604.1\|6499629_6500577_-	hypothetical protein	NA	NA	NA	NA
WP_166348607.1\|6500772_6501015_-	hypothetical protein	NA	NA	NA	NA
WP_166348610.1\|6501397_6502051_+	hypothetical protein	NA	NA	NA	NA
WP_166348613.1\|6503002_6503878_-	OmpA family protein	NA	NA	NA	NA
WP_166348616.1\|6504214_6504361_-	hypothetical protein	NA	NA	NA	NA
WP_011090937.1\|6504883_6505645_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.3e-66	53.1
WP_166348619.1\|6505663_6507205_-\|transposase	IS21-like element ISFK1 family transposase	K4I413	Acidithiobacillus_phage	4.6e-127	44.3
WP_166348622.1\|6508245_6509547_+	hypothetical protein	A0A1V0SGX0	Hokovirus	8.3e-05	23.0
WP_166353583.1\|6509714_6510308_-\|integrase	tyrosine-type recombinase/integrase	A0A2L1IV36	Escherichia_phage	5.1e-34	38.4
6510676:6510690	attR	NA	NA	NA	NA

DBSCAN-SWA_18

6564054 : 6571172

Salmonella_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_166348731.1\|6564054_6564519_+	ribonuclease HI	J9Q745	Salmonella_phage	6.5e-45	58.3
WP_007597501.1\|6564699_6565185_-	peroxiredoxin	M1I839	Pelagibacter_phage	9.9e-20	44.9
WP_166348734.1\|6565281_6565836_-	DUF924 domain-containing protein	E3T4R4	Cafeteria_roenbergensis_virus	1.3e-12	28.8
WP_166348737.1\|6565852_6567538_-	long-chain fatty acid--CoA ligase	Q75ZG1	Hepacivirus	3.8e-42	26.0
WP_166348740.1\|6567729_6569199_-	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	6.0e-28	34.4
WP_166348744.1\|6569375_6571172_-	glucan ABC transporter ATP-binding protein/ permease	W8CYL7	Bacillus_phage	2.1e-30	24.3

DBSCAN-SWA_19

6800686 : 6844556

Acidithiobacillus_phage(44.44%)

holin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_060913155.1\|6800686_6802228_+\|transposase	IS21-like element ISFK1 family transposase	K4I413	Acidithiobacillus_phage	6.0e-127	44.3
WP_011090937.1\|6802246_6803008_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.3e-66	53.1
WP_166349122.1\|6803084_6803543_-	ABC transporter permease	NA	NA	NA	NA
WP_166349125.1\|6803693_6804596_-	ABC transporter ATP-binding protein	M1IB70	Acanthocystis_turfacea_Chlorella_virus	7.3e-08	28.6
WP_166353603.1\|6804596_6805610_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.4e-14	32.5
WP_166349128.1\|6805666_6807214_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_166349131.1\|6807462_6808962_+	type I phosphodiesterase/nucleotide pyrophosphatase	NA	NA	NA	NA
WP_166349134.1\|6808981_6809782_+	phosphonate metabolism transcriptional regulator PhnF	NA	NA	NA	NA
WP_166353605.1\|6810033_6810825_-\|holin	phosphocholine cytidylyltransferase family protein	NA	NA	NA	NA
WP_028143493.1\|6812450_6812663_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_166353607.1\|6813512_6813737_-	hypothetical protein	NA	NA	NA	NA
WP_166349137.1\|6814654_6814876_+	hypothetical protein	NA	NA	NA	NA
WP_166349140.1\|6815121_6815352_+	hypothetical protein	NA	NA	NA	NA
WP_028143491.1\|6816045_6816351_+	hypothetical protein	NA	NA	NA	NA
WP_166349143.1\|6816350_6816734_+	hypothetical protein	NA	NA	NA	NA
WP_166349146.1\|6816730_6818071_+	ThiF family adenylyltransferase	NA	NA	NA	NA
WP_166349148.1\|6818063_6819545_+	hypothetical protein	NA	NA	NA	NA
WP_162603493.1\|6819541_6820066_+	hypothetical protein	NA	NA	NA	NA
WP_028143486.1\|6825353_6827477_+	S9 family peptidase	A0A1V0SHT0	Klosneuvirus	9.0e-41	31.1
WP_131233137.1\|6828224_6828425_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	1.1e-09	49.1
WP_166353609.1\|6829589_6830612_-	MFS transporter	NA	NA	NA	NA
WP_166349151.1\|6832103_6833660_-\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_011090937.1\|6833871_6834633_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.3e-66	53.1
WP_166349154.1\|6834651_6836193_-\|transposase	IS21-like element ISFK1 family transposase	K4I413	Acidithiobacillus_phage	7.8e-127	44.3
WP_166349157.1\|6837551_6838312_-\|transposase	IS5 family transposase	A0A0N9SJT9	Paenibacillus_phage	1.0e-07	35.5
WP_026192128.1\|6843491_6844556_-\|transposase	IS630 family transposase	NA	NA	NA	NA

DBSCAN-SWA_20

6856645 : 7021270

105

Paenibacillus_phage(17.65%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_166349163.1\|6856645_6857710_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_011084715.1\|6857727_6858564_+	hypothetical protein	NA	NA	NA	NA
WP_166349166.1\|6858984_6859744_+\|transposase	IS5 family transposase	A0A0N9SJT9	Paenibacillus_phage	2.1e-08	35.5
WP_026192128.1\|6859767_6860832_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_166349169.1\|6862047_6864501_+	LPS-assembly protein LptD	NA	NA	NA	NA
WP_014497849.1\|6864518_6864710_+	hypothetical protein	NA	NA	NA	NA
WP_049808069.1\|6865204_6866527_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.8e-31	30.1
WP_166353263.1\|6867083_6868385_+	group II intron reverse transcriptase/maturase	H7BVN0	unidentified_phage	8.9e-07	29.0
WP_166353263.1\|6869027_6870329_+	group II intron reverse transcriptase/maturase	H7BVN0	unidentified_phage	8.9e-07	29.0
WP_166349172.1\|6871227_6872019_+	glycosyl hydrolase	NA	NA	NA	NA
WP_162130978.1\|6872996_6873167_+	hypothetical protein	NA	NA	NA	NA
WP_154694111.1\|6873283_6873424_+	hypothetical protein	NA	NA	NA	NA
WP_085967575.1\|6874483_6875612_+\|transposase	IS3-like element ISRj2 family transposase	U5P429	Shigella_phage	2.0e-18	33.7
WP_166349175.1\|6876479_6876920_-	hypothetical protein	NA	NA	NA	NA
WP_166349178.1\|6877793_6880274_+	porin family protein	NA	NA	NA	NA
WP_156149859.1\|6880308_6880449_-	hypothetical protein	NA	NA	NA	NA
WP_166349181.1\|6884707_6885634_-	DUF2493 domain-containing protein	NA	NA	NA	NA
WP_166349184.1\|6885964_6887032_-	DNA primase	NA	NA	NA	NA
WP_166349187.1\|6891628_6892042_-	hypothetical protein	NA	NA	NA	NA
WP_166349190.1\|6892144_6894283_-	ParB N-terminal domain-containing protein	G8DH78	Emiliania_huxleyi_virus	1.4e-28	30.2
WP_011084732.1\|6894456_6895653_-	hypothetical protein	A0A1V0DX75	Synechococcus_virus	2.6e-77	43.7
WP_131234255.1\|6895898_6896126_+	hypothetical protein	NA	NA	NA	NA
WP_166349193.1\|6899718_6900438_+	DCL family protein	NA	NA	NA	NA
WP_026312796.1\|6900651_6901272_+	transcriptional regulator	NA	NA	NA	NA
WP_166349196.1\|6901261_6902182_+	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_166349199.1\|6902259_6903564_+	fibronectin-binding protein (FBP)	NA	NA	NA	NA
WP_166349202.1\|6903571_6905680_+	DUF87 domain-containing protein	NA	NA	NA	NA
WP_110115977.1\|6905688_6906921_+	exonuclease SbcCD subunit D	NA	NA	NA	NA
WP_085964990.1\|6908504_6909264_+\|transposase	IS5 family transposase	A0A0N9SJT9	Paenibacillus_phage	1.0e-07	35.5
WP_018273862.1\|6909339_6910689_+\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_018648597.1\|6913594_6914026_+	hypothetical protein	NA	NA	NA	NA
WP_166349205.1\|6914137_6914842_+	hypothetical protein	NA	NA	NA	NA
WP_166349208.1\|6914964_6915783_+	hypothetical protein	NA	NA	NA	NA
WP_018273862.1\|6915728_6917078_-\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_085964990.1\|6917152_6917913_-\|transposase	IS5 family transposase	A0A0N9SJT9	Paenibacillus_phage	1.0e-07	35.5
WP_085967575.1\|6918095_6919224_+\|transposase	IS3-like element ISRj2 family transposase	U5P429	Shigella_phage	2.0e-18	33.7
WP_166349211.1\|6920188_6922507_+	prolyl oligopeptidase family serine peptidase	NA	NA	NA	NA
WP_011084772.1\|6922712_6923012_+\|transposase	transposase	NA	NA	NA	NA
WP_166349214.1\|6923092_6923248_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_018273742.1\|6924376_6924733_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_035681142.1\|6924783_6926334_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	9.0e-83	38.9
WP_018273740.1\|6926381_6926981_+	UPF0149 family protein	NA	NA	NA	NA
WP_011084776.1\|6928521_6928749_+	hypothetical protein	NA	NA	NA	NA
WP_011084777.1\|6929062_6931042_-	RiPP maturation radical SAM protein 1	NA	NA	NA	NA
WP_011084781.1\|6933356_6933722_-	Nif11 family protein	NA	NA	NA	NA
WP_011084785.1\|6935181_6936501_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
WP_011084786.1\|6936500_6936752_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_028143997.1\|6937196_6938753_+	hypothetical protein	NA	NA	NA	NA
WP_011084789.1\|6938742_6939381_+	DUF4194 domain-containing protein	NA	NA	NA	NA
WP_166349217.1\|6942816_6943986_+	hypothetical protein	NA	NA	NA	NA
WP_011084792.1\|6944473_6944791_+	hypothetical protein	NA	NA	NA	NA
WP_166349220.1\|6945508_6947041_+	polygalacturonase	NA	NA	NA	NA
WP_166349223.1\|6947259_6948300_+	pectin esterase	NA	NA	NA	NA
WP_026192128.1\|6950062_6951127_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_018647405.1\|6951610_6952555_+	hypothetical protein	NA	NA	NA	NA
WP_041482620.1\|6953882_6955508_-\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	9.8e-88	38.7
WP_011090953.1\|6955561_6955918_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_041483034.1\|6955914_6956193_-\|transposase	transposase	NA	NA	NA	NA
WP_080586886.1\|6957421_6958057_+	hypothetical protein	NA	NA	NA	NA
WP_011084799.1\|6958064_6958445_-\|transposase	transposase	NA	NA	NA	NA
WP_038945536.1\|6958576_6960247_-	carbohydrate porin	NA	NA	NA	NA
WP_162131007.1\|6960690_6961047_-	hypothetical protein	NA	NA	NA	NA
WP_011084803.1\|6961460_6961979_+	hypothetical protein	NA	NA	NA	NA
WP_011084804.1\|6962387_6963725_-	oxygen-independent coproporphyrinogen III oxidase	NA	NA	NA	NA
WP_011084514.1\|6963976_6965041_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_108914088.1\|6968460_6968586_+	hypothetical protein	NA	NA	NA	NA
WP_014497822.1\|6968933_6969659_-	porin family protein	NA	NA	NA	NA
WP_011084811.1\|6970481_6970727_-	hypothetical protein	NA	NA	NA	NA
WP_014497821.1\|6971690_6972053_-	hypothetical protein	NA	NA	NA	NA
WP_071916446.1\|6973531_6974158_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_166349226.1\|6974231_6974522_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_166353611.1\|6974946_6975624_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_014497819.1\|6975782_6975992_-	hypothetical protein	NA	NA	NA	NA
WP_166349229.1\|6976318_6977662_-\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_011084818.1\|6978214_6979207_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_018646994.1\|6979840_6980785_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011084822.1\|6981578_6982211_+	NodA family N-acyltransferase	NA	NA	NA	NA
WP_166349232.1\|6982207_6982867_+	chitooligosaccharide deacetylase NodB	NA	NA	NA	NA
WP_166349236.1\|6982881_6984339_+	chitooligosaccharide synthase NodC	NA	NA	NA	NA
WP_014497813.1\|6984265_6984895_+	methyltransferase	NA	NA	NA	NA
WP_014497812.1\|6984908_6986618_+	nodulation protein NodU	M1ICZ5	Pelagibacter_phage	1.2e-27	29.3
WP_011084827.1\|6986619_6987540_+	nodulation factor ABC transporter ATP-binding protein NodI	W6JKT0	Anomala_cuprea_entomopoxvirus	5.5e-27	28.1
WP_011084828.1\|6987543_6988332_+	ABC transporter permease	NA	NA	NA	NA
WP_035667843.1\|6988576_6988972_+	hypothetical protein	NA	NA	NA	NA
WP_166349239.1\|6988968_6990615_+	nodulation protein	A0A222YXH1	Synechococcus_phage	8.0e-45	31.9
WP_026312623.1\|6990906_6991893_+	nodulation protein NodZ	NA	NA	NA	NA
WP_011084514.1\|6992213_6993278_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_011084833.1\|6993741_6994578_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_166349242.1\|6994761_6996579_+	nif-specific transcriptional activator NifA	NA	NA	NA	NA
WP_011084835.1\|6997096_6997963_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA
WP_166349245.1\|6999102_7000326_+	GFA family protein	NA	NA	NA	NA
WP_014497804.1\|7000310_7000988_+	2OG-Fe(II) oxygenase	NA	NA	NA	NA
WP_166349248.1\|7001532_7002000_-	hypothetical protein	NA	NA	NA	NA
WP_166349251.1\|7002469_7003780_-	hypothetical protein	NA	NA	NA	NA
WP_133415003.1\|7004583_7004844_-	hypothetical protein	NA	NA	NA	NA
WP_166349253.1\|7005716_7005950_-	hypothetical protein	NA	NA	NA	NA
WP_014497800.1\|7006141_7007155_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	5.0e-50	35.5
WP_011084846.1\|7007584_7007884_-	hypothetical protein	NA	NA	NA	NA
WP_018273742.1\|7008714_7009071_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_035681142.1\|7009121_7010672_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	9.0e-83	38.9
WP_018273740.1\|7010719_7011319_+	UPF0149 family protein	NA	NA	NA	NA
WP_014497799.1\|7011520_7011754_+	hypothetical protein	NA	NA	NA	NA
WP_018273734.1\|7014802_7015822_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_166349256.1\|7019200_7019362_+	hypothetical protein	NA	NA	NA	NA
WP_011084854.1\|7020373_7021270_+\|protease	YopT-type cysteine protease domain-containing protein	NA	NA	NA	NA

DBSCAN-SWA_21

7042282 : 7122053

Shigella_phage(18.75%)

integrase,transposase

attL 7059781:7059840|attR 7100652:7102015

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_035681142.1\|7042282_7043833_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	9.0e-83	38.9
WP_018273740.1\|7043880_7044480_+	UPF0149 family protein	NA	NA	NA	NA
WP_076829490.1\|7045422_7045608_+	hypothetical protein	A0A1X9SH55	Bradyrhizobium_phage	2.1e-10	63.8
WP_166349262.1\|7050378_7051437_+	fatty acid desaturase family protein	NA	NA	NA	NA
WP_011084876.1\|7051433_7052249_+	gamma-glutamyl-gamma-aminobutyrate hydrolase family protein	NA	NA	NA	NA
WP_080584265.1\|7055581_7057279_-	outer membrane beta-barrel protein	NA	NA	NA	NA
7059781:7059840	attL	NA	NA	NA	NA
WP_109866565.1\|7059868_7060997_+\|transposase	IS3-like element ISRj2 family transposase	U5P429	Shigella_phage	1.1e-18	33.7
WP_014497760.1\|7061268_7061472_-	hypothetical protein	NA	NA	NA	NA
WP_028154427.1\|7062878_7063265_+	ectoine synthase	NA	NA	NA	NA
WP_014497754.1\|7068893_7069577_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_018648598.1\|7070113_7070380_+	DUF3551 domain-containing protein	NA	NA	NA	NA
WP_166353613.1\|7070827_7071058_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_014497752.1\|7071482_7071857_+	hypothetical protein	NA	NA	NA	NA
WP_011084909.1\|7071853_7072174_+	XRE family transcriptional regulator	NA	NA	NA	NA
WP_141379388.1\|7073252_7073948_+	hypothetical protein	NA	NA	NA	NA
WP_109866565.1\|7075042_7076171_+\|transposase	IS3-like element ISRj2 family transposase	U5P429	Shigella_phage	1.1e-18	33.7
WP_018272321.1\|7077744_7079088_-\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_166349265.1\|7079676_7080234_+	hypothetical protein	NA	NA	NA	NA
WP_166349268.1\|7080230_7081694_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA
WP_166349271.1\|7081807_7082377_+	hypothetical protein	NA	NA	NA	NA
WP_166349274.1\|7082422_7082971_+	cation transporter	NA	NA	NA	NA
WP_041482620.1\|7083252_7084878_-\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	9.8e-88	38.7
WP_011090953.1\|7084931_7085288_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_026192391.1\|7085284_7085683_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_166349277.1\|7085759_7087313_+\|transposase	IS21-like element ISFK1 family transposase	K4I413	Acidithiobacillus_phage	3.9e-126	44.6
WP_011090937.1\|7087331_7088093_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.3e-66	53.1
WP_166349280.1\|7088232_7088901_-	hypothetical protein	NA	NA	NA	NA
WP_166349283.1\|7088965_7090273_+\|transposase	IS21 family transposase	U5N3F9	Enterobacteria_phage	1.4e-39	34.2
WP_166353615.1\|7090293_7091133_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	1.9e-58	47.8
WP_166340969.1\|7091127_7091355_-	hypothetical protein	NA	NA	NA	NA
WP_166349286.1\|7091646_7092930_+\|integrase	tyrosine-type recombinase/integrase	H6WRW7	Salmonella_phage	5.3e-20	27.2
WP_049808068.1\|7093600_7094092_+	hypothetical protein	NA	NA	NA	NA
WP_157790395.1\|7094165_7094336_-	hypothetical protein	NA	NA	NA	NA
WP_026192128.1\|7095433_7096498_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_011090958.1\|7096702_7096987_+	DUF3892 domain-containing protein	NA	NA	NA	NA
WP_154694125.1\|7097842_7098067_+	hypothetical protein	NA	NA	NA	NA
WP_014498624.1\|7098617_7098848_+	hypothetical protein	NA	NA	NA	NA
WP_028182460.1\|7099227_7099431_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	1.7e-10	49.2
WP_166349289.1\|7099728_7099995_+	DUF3892 domain-containing protein	NA	NA	NA	NA
WP_109866565.1\|7100739_7101868_+\|transposase	IS3-like element ISRj2 family transposase	U5P429	Shigella_phage	1.1e-18	33.7
WP_166349292.1\|7104621_7104846_-	hypothetical protein	NA	NA	NA	NA
7100652:7102015	attR	NA	NA	NA	NA
WP_085967392.1\|7106706_7107466_+\|transposase	IS5 family transposase	A0A0N9SJT9	Paenibacillus_phage	4.7e-08	35.5
WP_026192128.1\|7107606_7108671_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_166349295.1\|7108750_7109841_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.3e-48	39.8
WP_018273859.1\|7111225_7112269_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_166349298.1\|7113252_7113456_-	hypothetical protein	A0A0S2SY70	Pseudomonas_phage	2.8e-16	64.2
WP_166349301.1\|7115096_7116317_-	AAA family ATPase	NA	NA	NA	NA
WP_166353617.1\|7116316_7117132_-	virulence-associated protein E	NA	NA	NA	NA
WP_166349304.1\|7117256_7117520_+	hypothetical protein	NA	NA	NA	NA
WP_166340971.1\|7117567_7118026_+	hypothetical protein	NA	NA	NA	NA
WP_166349307.1\|7118791_7119079_+	hypothetical protein	NA	NA	NA	NA
WP_166349309.1\|7119078_7119393_+	hypothetical protein	NA	NA	NA	NA
WP_166349312.1\|7119389_7119653_+	hypothetical protein	NA	NA	NA	NA
WP_014497719.1\|7120847_7122053_+\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	1.1e-48	34.8

DBSCAN-SWA_22

7129774 : 7182081

Shigella_phage(18.18%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011084514.1\|7129774_7130839_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_028153675.1\|7132164_7133067_-	hypothetical protein	NA	NA	NA	NA
WP_026312707.1\|7133063_7134614_-	hypothetical protein	NA	NA	NA	NA
WP_028144010.1\|7134756_7135755_-	polyprenyl synthetase family protein	NA	NA	NA	NA
WP_018647447.1\|7135909_7137253_-	cytochrome P450	S4VQU1	Pandoravirus	1.2e-11	34.1
WP_166349321.1\|7137252_7138098_-	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	8.3e-14	27.7
WP_018647445.1\|7138102_7138393_-	ferredoxin	NA	NA	NA	NA
WP_018647444.1\|7138394_7139684_-	cytochrome P450	NA	NA	NA	NA
WP_166349324.1\|7139767_7140973_-	cytochrome P450	NA	NA	NA	NA
WP_026192128.1\|7141675_7142740_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_026192128.1\|7142795_7143860_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_038945511.1\|7144929_7145214_-	hypothetical protein	NA	NA	NA	NA
WP_011084919.1\|7146076_7146994_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA
WP_011084918.1\|7147903_7148686_-	hypothetical protein	NA	NA	NA	NA
WP_035715530.1\|7148682_7149282_-	trypsin-like peptidase domain-containing protein	NA	NA	NA	NA
WP_166353121.1\|7149719_7150848_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	2.0e-18	33.7
WP_166349326.1\|7151143_7151662_-	hypothetical protein	NA	NA	NA	NA
WP_011084914.1\|7152918_7153125_+	cold-shock protein	NA	NA	NA	NA
WP_011090937.1\|7153528_7154290_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.3e-66	53.1
WP_166349154.1\|7154308_7155850_-\|transposase	IS21-like element ISFK1 family transposase	K4I413	Acidithiobacillus_phage	7.8e-127	44.3
WP_166349329.1\|7156438_7157905_+	hypothetical protein	NA	NA	NA	NA
WP_166349331.1\|7157981_7158431_-	hypothetical protein	NA	NA	NA	NA
WP_166353173.1\|7159519_7160649_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	7.2e-21	33.3
WP_166349334.1\|7161596_7162184_+	DUF4126 domain-containing protein	NA	NA	NA	NA
WP_166349337.1\|7162204_7163149_-	AEC family transporter	NA	NA	NA	NA
WP_085400415.1\|7163521_7163857_+	hypothetical protein	NA	NA	NA	NA
WP_028150667.1\|7164288_7164966_+	ParA family protein	A0A1B3B0Z9	Gordonia_phage	1.4e-11	29.9
WP_014492080.1\|7165041_7165188_-	hypothetical protein	NA	NA	NA	NA
WP_161495798.1\|7165530_7165701_-	hypothetical protein	NA	NA	NA	NA
WP_166349340.1\|7165815_7166724_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
WP_027534296.1\|7167188_7168112_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_063985507.1\|7168117_7169083_-	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	4.6e-61	41.8
WP_166349343.1\|7169348_7169828_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_007596674.1\|7169948_7170422_-	transcription elongation factor GreA	NA	NA	NA	NA
WP_038942752.1\|7170632_7174097_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA
WP_166349346.1\|7174241_7175411_-	MFS transporter	NA	NA	NA	NA
WP_028150674.1\|7175523_7175895_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_166349348.1\|7176157_7176859_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_166349351.1\|7176974_7177499_+	DNA starvation/stationary phase protection protein	NA	NA	NA	NA
WP_166349353.1\|7177622_7178150_-	cupin domain-containing protein	NA	NA	NA	NA
WP_063985501.1\|7178305_7179496_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	7.0e-43	34.7
WP_166349356.1\|7179642_7180371_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_071909609.1\|7180404_7180860_+	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	2.4e-20	43.8
WP_071916215.1\|7181148_7182081_+\|transposase	IS110 family transposase	Q75QL1	Wolbachia_phage	1.8e-25	30.5

DBSCAN-SWA_23

7877929 : 7994642

Shigella_phage(19.05%)

integrase,transposase

attL 7932812:7932828|attR 8005969:8005985

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_166353185.1\|7877929_7879058_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	2.8e-17	33.1
WP_166350330.1\|7879886_7880447_+	hypothetical protein	NA	NA	NA	NA
WP_166350332.1\|7881241_7881526_-	hypothetical protein	NA	NA	NA	NA
WP_166350334.1\|7882570_7883857_+	hypothetical protein	NA	NA	NA	NA
WP_166350336.1\|7884261_7884657_+	hypothetical protein	NA	NA	NA	NA
WP_166350338.1\|7884659_7884863_+	hypothetical protein	NA	NA	NA	NA
WP_018273740.1\|7885169_7885769_-	UPF0149 family protein	NA	NA	NA	NA
WP_166350340.1\|7885816_7887367_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	9.0e-83	38.9
WP_018273742.1\|7887417_7887774_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_166350342.1\|7889473_7889773_-	DUF3892 domain-containing protein	NA	NA	NA	NA
WP_166353686.1\|7889773_7890316_+	polysaccharide biosynthesis protein	NA	NA	NA	NA
WP_166353688.1\|7890475_7891714_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_166350344.1\|7891710_7892586_+	SDR family oxidoreductase	A0A2L2DJC0	Acanthamoeba_polyphaga_mimivirus	1.5e-29	30.1
WP_166350346.1\|7892615_7893626_+	polysaccharide biosynthesis protein	L7Y3T9	Megavirus	9.5e-41	36.4
WP_166350348.1\|7893618_7894746_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A1V0SJE0	Klosneuvirus	1.1e-98	47.6
WP_166350350.1\|7894950_7896312_+	acyltransferase	A0A1R3Y5Q6	Salmonella_virus	2.6e-09	25.6
WP_166350352.1\|7896308_7897718_+	oligosaccharide flippase family protein	NA	NA	NA	NA
WP_166350354.1\|7897669_7898668_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_166350356.1\|7898664_7899861_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_166350358.1\|7899862_7900756_+	glycosyltransferase	A0A1V0SAH6	Catovirus	7.2e-08	32.0
WP_166350360.1\|7900791_7902453_-	hypothetical protein	NA	NA	NA	NA
WP_166350362.1\|7902592_7902853_-	hypothetical protein	NA	NA	NA	NA
WP_166350364.1\|7903151_7904240_-	HNH endonuclease	NA	NA	NA	NA
WP_166350366.1\|7904376_7905897_-	DUF2235 domain-containing protein	NA	NA	NA	NA
WP_166350368.1\|7906139_7906433_-	hypothetical protein	NA	NA	NA	NA
WP_038952271.1\|7907264_7908533_+\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	3.9e-92	45.9
WP_166350370.1\|7909078_7909525_-	hypothetical protein	NA	NA	NA	NA
WP_166350372.1\|7909749_7911138_-	S8 family serine peptidase	NA	NA	NA	NA
WP_166350374.1\|7911106_7911808_-	hypothetical protein	NA	NA	NA	NA
WP_166350376.1\|7911817_7912228_-	hypothetical protein	NA	NA	NA	NA
WP_166350378.1\|7912791_7913328_+	trypsin-like peptidase domain-containing protein	NA	NA	NA	NA
WP_166340975.1\|7913210_7914605_+	ATP-binding protein	NA	NA	NA	NA
WP_166350380.1\|7914601_7914949_+	hypothetical protein	NA	NA	NA	NA
WP_018272321.1\|7915355_7916699_+\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_166350382.1\|7916892_7919964_+	hypothetical protein	NA	NA	NA	NA
WP_166341218.1\|7920207_7921749_+\|transposase	IS21-like element ISFK1 family transposase	K4I413	Acidithiobacillus_phage	6.0e-127	44.3
WP_011090937.1\|7921767_7922529_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.3e-66	53.1
WP_038952109.1\|7922824_7923592_+	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	2.7e-19	27.4
WP_018273888.1\|7924483_7926637_-	peptidase domain-containing ABC transporter	W8CYL7	Bacillus_phage	2.0e-43	28.0
WP_018273889.1\|7926667_7927753_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
7932812:7932828	attL	NA	NA	NA	NA
WP_060907863.1\|7933790_7934099_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_166353690.1\|7934095_7934374_-\|transposase	transposase	NA	NA	NA	NA
WP_129557537.1\|7934699_7934915_+	hypothetical protein	NA	NA	NA	NA
WP_018273892.1\|7935010_7935163_+\|transposase	transposase	NA	NA	NA	NA
WP_166353692.1\|7936774_7937903_+\|transposase	IS3-like element ISRj2 family transposase	U5P429	Shigella_phage	2.0e-18	33.7
WP_166353693.1\|7938001_7938205_+	hypothetical protein	NA	NA	NA	NA
WP_166350384.1\|7939708_7940887_-\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	1.1e-48	34.8
WP_166350386.1\|7941543_7942584_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_028154397.1\|7944330_7944657_-	hypothetical protein	NA	NA	NA	NA
WP_166350388.1\|7944859_7945084_-	hypothetical protein	NA	NA	NA	NA
WP_166350390.1\|7945295_7945556_-	hypothetical protein	NA	NA	NA	NA
WP_166350392.1\|7946430_7947909_+	hypothetical protein	NA	NA	NA	NA
WP_166350394.1\|7948293_7948596_-	hypothetical protein	NA	NA	NA	NA
WP_166353695.1\|7949014_7949239_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_166350396.1\|7949689_7950295_+	hypothetical protein	NA	NA	NA	NA
WP_166350398.1\|7950704_7951370_+	hypothetical protein	NA	NA	NA	NA
WP_166350400.1\|7951366_7951576_+	hypothetical protein	NA	NA	NA	NA
WP_166350402.1\|7951572_7952715_+	DNA polymerase III subunit beta	R9TRR6	Rhizobium_phage	9.5e-21	26.2
WP_166350404.1\|7952773_7953397_+	hypothetical protein	NA	NA	NA	NA
WP_166350406.1\|7953412_7955467_+	AAA family ATPase	NA	NA	NA	NA
WP_166350408.1\|7956901_7957081_-	hypothetical protein	NA	NA	NA	NA
WP_166350410.1\|7957205_7957592_+	hypothetical protein	NA	NA	NA	NA
WP_166350411.1\|7957600_7958257_-	recombinase family protein	A0A0F7L6S1	uncultured_marine_virus	9.6e-26	38.9
WP_166350413.1\|7958574_7959099_+	hypothetical protein	NA	NA	NA	NA
WP_166350415.1\|7959297_7959624_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_166353173.1\|7960161_7961290_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	7.2e-21	33.3
WP_166350417.1\|7961881_7962907_-	methyltransferase	NA	NA	NA	NA
WP_166350419.1\|7963265_7964246_+	catalase family peroxidase	NA	NA	NA	NA
WP_166350421.1\|7964656_7965100_+	CBS domain-containing protein	NA	NA	NA	NA
WP_166350423.1\|7966870_7968679_+	arylsulfatase	A0A2P0VMN7	Tetraselmis_virus	2.0e-73	35.7
WP_166350425.1\|7969035_7969623_+	hypothetical protein	NA	NA	NA	NA
WP_166350427.1\|7969710_7970925_+	PQQ-binding-like beta-propeller repeat protein	S4VXT0	Pandoravirus	7.7e-05	40.7
WP_166350429.1\|7970906_7971521_+	PQQ-binding-like beta-propeller repeat protein	NA	NA	NA	NA
WP_166353696.1\|7971575_7972961_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_166350431.1\|7976043_7976259_+	hypothetical protein	NA	NA	NA	NA
WP_166340977.1\|7976371_7976611_-	hypothetical protein	NA	NA	NA	NA
WP_166350433.1\|7977027_7977291_+	hypothetical protein	NA	NA	NA	NA
WP_166350435.1\|7977615_7977786_-	hypothetical protein	NA	NA	NA	NA
WP_166350437.1\|7978053_7978518_-	Phasin protein	NA	NA	NA	NA
WP_166350439.1\|7978693_7979002_-	hypothetical protein	NA	NA	NA	NA
WP_166350441.1\|7980267_7980516_+	hypothetical protein	NA	NA	NA	NA
WP_129557324.1\|7981085_7982214_+\|transposase	IS3-like element ISRj2 family transposase	U5P429	Shigella_phage	7.2e-21	33.3
WP_166350443.1\|7983038_7983269_-	hypothetical protein	NA	NA	NA	NA
WP_166350445.1\|7983481_7984174_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_166353698.1\|7984996_7985527_+	PRC-barrel domain containing protein	NA	NA	NA	NA
WP_166350447.1\|7987873_7988056_-	hypothetical protein	NA	NA	NA	NA
WP_166353700.1\|7988321_7988678_-	hypothetical protein	NA	NA	NA	NA
WP_166350449.1\|7989722_7992905_-	metallophosphoesterase	NA	NA	NA	NA
WP_166353702.1\|7993241_7994642_-\|integrase	tyrosine-type recombinase/integrase	A0A1X9SGU9	Bradyrhizobium_phage	4.1e-42	31.7
8005969:8005985	attR	NA	NA	NA	NA

DBSCAN-SWA_24

8382420 : 8410544

Stx2-converting_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_060909066.1\|8382420_8384046_-\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	9.8e-88	38.7
WP_011090953.1\|8384099_8384456_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_041483034.1\|8384452_8384731_-\|transposase	transposase	NA	NA	NA	NA
WP_039152009.1\|8385034_8385808_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_166340979.1\|8385906_8386074_-	hypothetical protein	NA	NA	NA	NA
WP_039152006.1\|8386060_8387080_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	9.6e-25	31.2
WP_080703955.1\|8387145_8388405_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_166353730.1\|8388451_8389372_+	sugar ABC transporter permease	NA	NA	NA	NA
WP_063982691.1\|8389368_8390178_+	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_039151999.1\|8390177_8391017_+	hypothetical protein	NA	NA	NA	NA
WP_039151997.1\|8391018_8391396_+	NUDIX hydrolase	NA	NA	NA	NA
WP_166350906.1\|8391607_8392927_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_063982694.1\|8393013_8393964_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_039151990.1\|8393965_8394886_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_039151988.1\|8394895_8395657_+	hypothetical protein	NA	NA	NA	NA
WP_166350907.1\|8395653_8397189_+	alkaline phosphatase	NA	NA	NA	NA
WP_039151984.1\|8397190_8397991_+	inositol monophosphatase	NA	NA	NA	NA
WP_080703954.1\|8398029_8398935_+	sugar-binding transcriptional regulator	NA	NA	NA	NA
WP_051664704.1\|8398931_8400386_+	xylulokinase	NA	NA	NA	NA
WP_039151980.1\|8400474_8401491_+	alcohol dehydrogenase catalytic domain-containing protein	E3SJ82	Synechococcus_phage	4.1e-15	26.0
WP_166350908.1\|8401514_8401673_+	hypothetical protein	NA	NA	NA	NA
WP_011084514.1\|8401659_8402724_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_166350909.1\|8402697_8403300_+	HAD-IA family hydrolase	NA	NA	NA	NA
WP_039157419.1\|8403903_8405025_-	D-alanine--D-alanine ligase	NA	NA	NA	NA
WP_158332908.1\|8405463_8405838_-\|transposase	transposase	NA	NA	NA	NA
WP_039151977.1\|8405772_8406609_+	nickel-transport family protein	NA	NA	NA	NA
WP_166350910.1\|8406761_8407190_+	hypothetical protein	NA	NA	NA	NA
WP_085967575.1\|8407276_8408405_+\|transposase	IS3-like element ISRj2 family transposase	U5P429	Shigella_phage	2.0e-18	33.7
WP_166350911.1\|8408737_8409493_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_026192128.1\|8409479_8410544_-\|transposase	IS630 family transposase	NA	NA	NA	NA

DBSCAN-SWA_25

8585043 : 8592766

Acidithiobacillus_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_109866565.1\|8585043_8586173_-\|transposase	IS3-like element ISRj2 family transposase	U5P429	Shigella_phage	1.1e-18	33.7
WP_035681142.1\|8586452_8588003_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	9.0e-83	38.9
WP_166353746.1\|8588050_8588707_+	UPF0149 family protein	NA	NA	NA	NA
WP_166351003.1\|8588812_8590354_+\|transposase	IS21-like element ISFK1 family transposase	K4I413	Acidithiobacillus_phage	1.2e-127	44.5
WP_011090937.1\|8590372_8591134_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.3e-66	53.1
WP_166353748.1\|8591731_8591929_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	1.3e-10	49.2
WP_166351005.1\|8592036_8592207_+	hypothetical protein	NA	NA	NA	NA
WP_166351007.1\|8592583_8592766_-	hypothetical protein	A0A1X9SH55	Bradyrhizobium_phage	1.2e-10	61.7

DBSCAN-SWA_26

8648291 : 8710020

Staphylococcus_phage(18.75%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_026192128.1\|8648291_8649356_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_166351101.1\|8650474_8650648_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_166351103.1\|8650638_8650935_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_166351105.1\|8650922_8651372_-	hypothetical protein	NA	NA	NA	NA
WP_166351107.1\|8651716_8652826_+	DUF4118 domain-containing protein	NA	NA	NA	NA
WP_166351109.1\|8652822_8653278_+	response regulator	NA	NA	NA	NA
WP_166351111.1\|8653274_8655707_+	PAS domain S-box protein	NA	NA	NA	NA
WP_166350340.1\|8657602_8659153_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	9.0e-83	38.9
WP_018273742.1\|8659203_8659560_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_166351114.1\|8660179_8662144_+	acetate--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	1.4e-88	39.5
WP_166351116.1\|8662203_8662785_+	adenylate kinase	NA	NA	NA	NA
WP_166351118.1\|8662962_8663442_+	hypothetical protein	NA	NA	NA	NA
WP_071915789.1\|8663777_8664026_-	hypothetical protein	NA	NA	NA	NA
WP_166351120.1\|8664230_8664497_-	hypothetical protein	NA	NA	NA	NA
WP_166351122.1\|8664715_8665558_-	metallophosphoesterase	A0A067XQN2	Caulobacter_phage	1.8e-32	35.7
WP_166351124.1\|8666411_8666603_-	hypothetical protein	NA	NA	NA	NA
WP_166351126.1\|8667466_8668039_+	hypothetical protein	NA	NA	NA	NA
WP_060913155.1\|8668167_8669709_+\|transposase	IS21-like element ISFK1 family transposase	K4I413	Acidithiobacillus_phage	6.0e-127	44.3
WP_011090937.1\|8669727_8670489_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.3e-66	53.1
WP_166351128.1\|8670655_8672797_+\|transposase	transposase	NA	NA	NA	NA
WP_166351130.1\|8672812_8673160_+	hypothetical protein	NA	NA	NA	NA
WP_166351132.1\|8673056_8673449_+	hypothetical protein	NA	NA	NA	NA
WP_018273742.1\|8673807_8674164_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_166350340.1\|8674214_8675765_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	9.0e-83	38.9
WP_166351134.1\|8676436_8677057_+	hypothetical protein	NA	NA	NA	NA
WP_166351136.1\|8677116_8678037_+	hypothetical protein	NA	NA	NA	NA
WP_166351138.1\|8678170_8680120_+	hypothetical protein	NA	NA	NA	NA
WP_166351140.1\|8680751_8681399_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_166351142.1\|8681395_8682034_-	arylsulfatase	NA	NA	NA	NA
WP_063984716.1\|8682193_8683207_-	amino acid ABC transporter substrate-binding protein	A0A1B1IT51	uncultured_Mediterranean_phage	1.5e-65	40.5
WP_166351144.1\|8683219_8684569_-	aspartate aminotransferase family protein	NA	NA	NA	NA
WP_166351146.1\|8684572_8685445_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_071915770.1\|8685532_8686720_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_166351148.1\|8686722_8687832_+	amino acid ABC transporter permease	NA	NA	NA	NA
WP_166351150.1\|8688262_8689681_-	amidase	NA	NA	NA	NA
WP_166351152.1\|8689797_8690574_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_166351154.1\|8690733_8691807_+	tartrate dehydrogenase	NA	NA	NA	NA
WP_166351156.1\|8692008_8692650_-	suppressor of fused domain protein	NA	NA	NA	NA
WP_028146878.1\|8692817_8693891_-	malate/lactate/ureidoglycolate dehydrogenase	NA	NA	NA	NA
WP_166351158.1\|8693902_8694814_-	3-phosphoglycerate dehydrogenase	M1I636	Acanthocystis_turfacea_Chlorella_virus	2.1e-23	31.8
WP_041955820.1\|8694826_8696077_-	Zn-dependent hydrolase	NA	NA	NA	NA
WP_063984703.1\|8696109_8697027_-	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	4.2e-11	23.5
WP_166351160.1\|8697146_8697962_+	putative hydro-lyase	NA	NA	NA	NA
WP_166351162.1\|8698051_8699293_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_063984700.1\|8699459_8700338_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_063984699.1\|8700337_8701321_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_166351164.1\|8701317_8702049_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.0e-11	25.8
WP_166351166.1\|8702032_8702737_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.8e-12	24.8
WP_166351167.1\|8702921_8703596_-	aldolase	A0A077SK32	Escherichia_phage	1.7e-46	48.3
WP_014496893.1\|8703701_8704619_+	NAD-binding protein	A0A077SLF7	Escherichia_phage	1.1e-67	49.8
WP_166351169.1\|8704634_8705417_+	hydroxypyruvate isomerase family protein	NA	NA	NA	NA
WP_166351171.1\|8705413_8706691_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	6.5e-71	41.0
WP_166351173.1\|8706861_8708553_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	2.8e-13	29.3
WP_086023025.1\|8708891_8710020_+\|transposase	IS3-like element ISRj2 family transposase	U5P429	Shigella_phage	2.0e-18	33.7

DBSCAN-SWA_27

9609490 : 9666933

Prochlorococcus_phage(15.38%)

tRNA,integrase,protease,transposase,plate

attL 9639464:9639482|attR 9672305:9672323

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085971921.1\|9609490_9610251_-\|transposase	IS5-like element ISBj2 family transposase	A0A0N9SJT9	Paenibacillus_phage	3.6e-08	35.5
WP_166352102.1\|9610905_9611226_+	ferredoxin family protein	NA	NA	NA	NA
WP_166352104.1\|9611654_9612095_-	hypothetical protein	NA	NA	NA	NA
WP_166352105.1\|9612255_9612456_-	hypothetical protein	NA	NA	NA	NA
WP_166352107.1\|9612586_9613351_-	porin family protein	NA	NA	NA	NA
WP_166352109.1\|9613901_9614129_-	hypothetical protein	NA	NA	NA	NA
WP_166352111.1\|9614841_9616434_-	DUF4118 domain-containing protein	W8CYF6	Bacillus_phage	1.6e-10	25.0
WP_166352113.1\|9616880_9617456_-	hypothetical protein	NA	NA	NA	NA
WP_166352115.1\|9617898_9619521_+	outer membrane beta-barrel protein	NA	NA	NA	NA
WP_166352117.1\|9619616_9620336_+	porin family protein	NA	NA	NA	NA
WP_166353870.1\|9625324_9626659_+	TolC family outer membrane protein	NA	NA	NA	NA
WP_166352119.1\|9626686_9626944_+	hypothetical protein	NA	NA	NA	NA
WP_166352121.1\|9627746_9628610_+	DUF4118 domain-containing protein	NA	NA	NA	NA
WP_166352123.1\|9628715_9629681_+	magnesium/cobalt transporter CorA	NA	NA	NA	NA
WP_166352125.1\|9630103_9631099_+\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_166352127.1\|9631151_9631820_-	porin family protein	NA	NA	NA	NA
WP_085404882.1\|9632186_9632726_-\|protease	TIGR02281 family clan AA aspartic protease	NA	NA	NA	NA
WP_166352129.1\|9632754_9632958_-	DUF1289 domain-containing protein	NA	NA	NA	NA
WP_166352131.1\|9633002_9634598_-	HAMP domain-containing histidine kinase	Q8QKV7	Ectocarpus_siliculosus_virus	1.3e-20	30.4
WP_071915184.1\|9634735_9636013_-	sodium:proton antiporter	NA	NA	NA	NA
WP_166352133.1\|9636035_9636908_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_071915182.1\|9637097_9637535_+	glyoxalase	NA	NA	NA	NA
WP_166352135.1\|9637643_9638786_+	Mrp/NBP35 family ATP-binding protein	NA	NA	NA	NA
WP_014496209.1\|9638979_9640071_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA
9639464:9639482	attL	NA	NA	NA	NA
WP_166352137.1\|9640595_9640943_+	hypothetical protein	NA	NA	NA	NA
WP_166353872.1\|9641047_9641509_-	hypothetical protein	NA	NA	NA	NA
WP_063984030.1\|9642688_9643546_-	hypothetical protein	A0A2I2L3U5	Orpheovirus	1.0e-51	44.8
WP_063984029.1\|9644011_9645775_+	HAMP domain-containing protein	NA	NA	NA	NA
WP_071915177.1\|9645906_9646860_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_028146749.1\|9647021_9647696_+	response regulator transcription factor	NA	NA	NA	NA
WP_166352139.1\|9647697_9649098_+	two-component sensor histidine kinase	NA	NA	NA	NA
WP_166352141.1\|9649395_9650727_+\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	7.4e-41	30.7
WP_035679974.1\|9651029_9651452_-	hypothetical protein	NA	NA	NA	NA
WP_049831746.1\|9651823_9652309_+	hypothetical protein	NA	NA	NA	NA
WP_166352143.1\|9652339_9653149_+	hypothetical protein	NA	NA	NA	NA
WP_050995108.1\|9653253_9653676_+	helix-turn-helix transcriptional regulator	Q8W6G2	Sinorhizobium_phage	2.4e-14	39.3
WP_028154551.1\|9653672_9654014_+	hypothetical protein	NA	NA	NA	NA
WP_166352145.1\|9654010_9654325_+	hypothetical protein	NA	NA	NA	NA
WP_166352147.1\|9654317_9654497_+	hypothetical protein	NA	NA	NA	NA
WP_166352148.1\|9654821_9655583_-	hypothetical protein	NA	NA	NA	NA
WP_026192128.1\|9655959_9657024_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_018273913.1\|9657700_9658954_+\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	1.9e-102	51.3
WP_166352149.1\|9658994_9659216_-	hypothetical protein	NA	NA	NA	NA
WP_166352151.1\|9659851_9660031_-	hypothetical protein	NA	NA	NA	NA
WP_166352153.1\|9660034_9660232_-	hypothetical protein	A0A0K0KVS2	Prochlorococcus_phage	3.9e-07	62.2
WP_166352155.1\|9660231_9662106_-	hypothetical protein	L7Y6V2	Megavirus	7.2e-10	34.4
WP_166352157.1\|9662102_9662447_-	hypothetical protein	NA	NA	NA	NA
WP_166352159.1\|9662446_9662734_-	hypothetical protein	NA	NA	NA	NA
WP_166352161.1\|9662726_9664076_-	hypothetical protein	A0A068CE15	Rhizobium_phage	3.1e-10	43.2
WP_166352163.1\|9664148_9664928_-	DUF2313 domain-containing protein	NA	NA	NA	NA
WP_166352165.1\|9664920_9665358_-	hypothetical protein	M1PXE7	Prochlorococcus_phage	7.1e-09	38.0
WP_166352167.1\|9665358_9666429_-\|plate	baseplate J/gp47 family protein	A0A068CC89	Rhizobium_phage	2.0e-36	32.2
WP_166352169.1\|9666429_9666933_-	hypothetical protein	B5TK74	Pseudomonas_phage	1.8e-08	36.7
9672305:9672323	attR	NA	NA	NA	NA

DBSCAN-SWA_28

9672624 : 9682573

Shigella_phage(20.0%)

protease,tail,head,portal,terminase,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_166352181.1\|9672624_9672942_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_028152434.1\|9672971_9673334_-	hypothetical protein	NA	NA	NA	NA
WP_166352183.1\|9673415_9674939_-\|tail	phage tail protein	S5FKL0	Shigella_phage	4.7e-108	45.2
WP_166352185.1\|9675122_9675827_-	hypothetical protein	NA	NA	NA	NA
WP_166352187.1\|9675823_9676168_-	hypothetical protein	NA	NA	NA	NA
WP_166353874.1\|9676192_9677212_-\|capsid	major capsid protein	A0A2H4J890	uncultured_Caudovirales_phage	4.7e-56	37.6
WP_166352188.1\|9677324_9677693_-\|head	head decoration protein	NA	NA	NA	NA
WP_166352190.1\|9677718_9678735_-\|protease	Clp protease ClpP	A0A1B0YZU0	Pseudomonas_phage	2.5e-41	42.5
WP_166352192.1\|9678745_9680335_-\|portal	phage portal protein	K4I1F2	Acidithiobacillus_phage	9.2e-123	50.3
WP_166352194.1\|9680338_9680563_-	hypothetical protein	NA	NA	NA	NA
WP_166352196.1\|9680566_9682573_-\|terminase	terminase	D6PFE7	uncultured_phage	3.5e-34	27.6

DBSCAN-SWA_29

10302672 : 10344260

Bradyrhizobium_phage(18.18%)

integrase,terminase,transposase

attL 10327168:10327184|attR 10352341:10352357

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_166352931.1\|10302672_10304016_-\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_166352933.1\|10304565_10305771_+	acyltransferase	NA	NA	NA	NA
WP_166352935.1\|10305936_10306422_+	hypothetical protein	M4R207	Salicola_phage	7.6e-12	39.6
WP_038945789.1\|10307684_10307909_+	hypothetical protein	NA	NA	NA	NA
WP_166352937.1\|10307915_10308239_-	hypothetical protein	NA	NA	NA	NA
WP_129557324.1\|10308420_10309549_+\|transposase	IS3-like element ISRj2 family transposase	U5P429	Shigella_phage	7.2e-21	33.3
WP_157790361.1\|10309878_10310301_-	hypothetical protein	NA	NA	NA	NA
WP_038945786.1\|10310406_10310589_+	hypothetical protein	NA	NA	NA	NA
WP_038976528.1\|10310756_10310978_+	hypothetical protein	NA	NA	NA	NA
WP_038945784.1\|10310970_10311276_+	hypothetical protein	NA	NA	NA	NA
WP_166352939.1\|10311279_10311441_+	hypothetical protein	NA	NA	NA	NA
WP_166352941.1\|10311437_10311641_+	hypothetical protein	NA	NA	NA	NA
WP_166352943.1\|10311637_10312102_+	DUF2493 domain-containing protein	A0A1I9SEW9	Klebsiella_phage	1.3e-21	49.1
WP_166352945.1\|10312011_10313328_+	hypothetical protein	NA	NA	NA	NA
WP_155257990.1\|10313302_10313521_-	hypothetical protein	NA	NA	NA	NA
WP_166352947.1\|10313753_10313915_-	hypothetical protein	NA	NA	NA	NA
WP_166352949.1\|10313913_10315359_+\|terminase	phage terminase large subunit	X2CY37	Brucella_phage	1.1e-16	37.0
WP_166352951.1\|10315355_10315778_+	hypothetical protein	NA	NA	NA	NA
WP_166352953.1\|10315755_10317441_+	hypothetical protein	I6NV36	Burkholderia_virus	2.2e-10	23.8
WP_166352955.1\|10317666_10318536_+	hypothetical protein	NA	NA	NA	NA
WP_166352957.1\|10318572_10319760_+	DUF4043 family protein	NA	NA	NA	NA
WP_166352959.1\|10319832_10320258_+	hypothetical protein	NA	NA	NA	NA
WP_028152241.1\|10320326_10320590_+	hypothetical protein	NA	NA	NA	NA
WP_166352961.1\|10320657_10321026_+	hypothetical protein	NA	NA	NA	NA
WP_166352963.1\|10321025_10321367_+	hypothetical protein	NA	NA	NA	NA
WP_166352965.1\|10321366_10322785_+	hypothetical protein	NA	NA	NA	NA
WP_028152237.1\|10322781_10323024_+	hypothetical protein	NA	NA	NA	NA
WP_166352967.1\|10323025_10323838_+	hypothetical protein	NA	NA	NA	NA
WP_166352969.1\|10323848_10325822_+	hypothetical protein	A0A2H5BM72	Streptomyces_phage	1.1e-19	41.3
WP_166352971.1\|10325824_10327381_+	hypothetical protein	A0A1B1INQ3	uncultured_Mediterranean_phage	1.0e-54	33.7
10327168:10327184	attL	NA	NA	NA	NA
WP_166352973.1\|10327414_10328392_+	hypothetical protein	NA	NA	NA	NA
WP_038953507.1\|10328398_10328740_+	hypothetical protein	NA	NA	NA	NA
WP_166352975.1\|10328736_10329930_+	hypothetical protein	NA	NA	NA	NA
WP_166352977.1\|10329923_10330955_+	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_166352979.1\|10330951_10331755_+	hypothetical protein	NA	NA	NA	NA
WP_166352981.1\|10331770_10332673_+	hypothetical protein	NA	NA	NA	NA
WP_166352983.1\|10332681_10332915_+	hypothetical protein	NA	NA	NA	NA
WP_026192128.1\|10332946_10334011_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_166353940.1\|10334091_10334706_-	DNA ligase	A0A1X9SH33	Bradyrhizobium_phage	7.5e-57	58.0
WP_166352985.1\|10335759_10336017_+	hypothetical protein	NA	NA	NA	NA
WP_166352987.1\|10336401_10337004_+	hypothetical protein	NA	NA	NA	NA
WP_166352989.1\|10337033_10337282_+	hypothetical protein	NA	NA	NA	NA
WP_060909066.1\|10337729_10339355_-\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	9.8e-88	38.7
WP_011090953.1\|10339408_10339765_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_026192391.1\|10339761_10340160_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_166352991.1\|10340232_10340862_-	hypothetical protein	NA	NA	NA	NA
WP_038943583.1\|10340880_10341228_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_038943582.1\|10341227_10341491_-	hypothetical protein	NA	NA	NA	NA
WP_085965769.1\|10341487_10341766_-	helix-turn-helix transcriptional regulator	Q8W6G2	Sinorhizobium_phage	4.6e-06	52.7
WP_166352993.1\|10342125_10342524_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_166352995.1\|10342853_10344260_-\|integrase	integrase family protein	A0A1X9SGU9	Bradyrhizobium_phage	5.2e-29	28.9
10352341:10352357	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP049700

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

28409 : 77530

Mycobacterium_phage(60.0%)

transposase,integrase

attL 28273:28305|attR 31692:31724

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
28273:28305	attL	NA	NA	NA	NA
WP_026193374.1\|28409_29627_+\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	6.8e-09	27.5
WP_166353992.1\|29623_30601_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_028154610.1\|30597_31623_+\|integrase	tyrosine-type recombinase/integrase	B3GAN2	uncultured_virus	4.1e-07	26.6
WP_166354268.1\|33921_34857_+	RNA-directed DNA polymerase	A0A0U4J920	Pseudomonas_phage	1.2e-18	31.1
31692:31724	attR	NA	NA	NA	NA
WP_166354270.1\|34837_35967_-\|transposase	IS3 family transposase	A0A2P1JR32	Mycobacterium_phage	3.1e-16	32.6
WP_166353993.1\|36054_36789_-	hypothetical protein	NA	NA	NA	NA
WP_166353995.1\|36841_37813_-	hypothetical protein	NA	NA	NA	NA
WP_028153929.1\|38033_38312_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_166353997.1\|38308_39586_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
WP_166353999.1\|39558_40287_+	DUF4238 domain-containing protein	NA	NA	NA	NA
WP_166354001.1\|40375_40564_+	hypothetical protein	NA	NA	NA	NA
WP_166354003.1\|40676_41408_+	hypothetical protein	NA	NA	NA	NA
WP_028153925.1\|41413_42109_+	hypothetical protein	NA	NA	NA	NA
WP_166354005.1\|42279_43239_+	abortive infection family protein	NA	NA	NA	NA
WP_166354007.1\|43250_44507_-	DUF87 domain-containing protein	NA	NA	NA	NA
WP_166354009.1\|44533_45106_-	hypothetical protein	NA	NA	NA	NA
WP_166354011.1\|45840_46458_+	hypothetical protein	NA	NA	NA	NA
WP_028154271.1\|46635_48045_+	DUF2130 domain-containing protein	NA	NA	NA	NA
WP_109866565.1\|48397_49526_+\|transposase	IS3-like element ISRj2 family transposase	A0A2P1JR32	Mycobacterium_phage	1.2e-15	34.2
WP_038952271.1\|49793_51062_-\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	3.9e-92	45.9
WP_080587066.1\|51249_51402_+	hypothetical protein	NA	NA	NA	NA
WP_166354013.1\|51558_51753_+	hypothetical protein	NA	NA	NA	NA
WP_166354015.1\|51749_54212_+	AAA family ATPase	NA	NA	NA	NA
WP_166344276.1\|54535_55804_-\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	7.1e-94	46.2
WP_166354017.1\|56009_56819_+	restriction endonuclease	NA	NA	NA	NA
WP_166354272.1\|58312_59590_-	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	4.2e-102	53.3
WP_080650451.1\|59616_60306_-	L-serine ammonia-lyase	NA	NA	NA	NA
WP_080650449.1\|61181_61520_-\|transposase	transposase	A0A2P1JR32	Mycobacterium_phage	8.2e-05	33.0
WP_018273657.1\|62241_62397_+	DUF3768 domain-containing protein	NA	NA	NA	NA
WP_080650447.1\|62887_63379_+	hypothetical protein	NA	NA	NA	NA
WP_018273655.1\|63430_64567_+	cell division protein FtsZ	NA	NA	NA	NA
WP_026193370.1\|64563_64803_+	hypothetical protein	NA	NA	NA	NA
WP_166354019.1\|65146_66490_-\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_166354021.1\|67018_68077_+	DUF4238 domain-containing protein	NA	NA	NA	NA
WP_166354274.1\|68417_69546_+\|transposase	IS3 family transposase	A0A2P1JR32	Mycobacterium_phage	5.7e-18	33.0
WP_166354023.1\|70291_71497_-	SCO family protein	NA	NA	NA	NA
WP_166354025.1\|71507_72359_-	hypothetical protein	NA	NA	NA	NA
WP_166354275.1\|72394_73039_-	tyrosinase family protein	NA	NA	NA	NA
WP_166354027.1\|74734_76408_-	hypothetical protein	NA	NA	NA	NA
WP_026192128.1\|76465_77530_-\|transposase	IS630 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

100455 : 244375

111

Mycobacterium_phage(16.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_018273869.1\|100455_100761_+\|transposase	transposase	NA	NA	NA	NA
WP_166354046.1\|100891_101047_+\|transposase	transposase	NA	NA	NA	NA
WP_060909066.1\|101155_102781_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	5.5e-91	39.1
WP_011090953.1\|102834_103191_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_041483034.1\|103187_103466_-\|transposase	transposase	NA	NA	NA	NA
WP_166354049.1\|103699_103894_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_018273867.1\|105534_106125_+	YecA family protein	NA	NA	NA	NA
WP_041483025.1\|106742_107108_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	3.2e-15	47.5
WP_157183496.1\|107542_108259_+	DUF2169 domain-containing protein	NA	NA	NA	NA
WP_026192391.1\|108479_108878_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_011090953.1\|108874_109231_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_060909066.1\|109284_110910_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	5.5e-91	39.1
WP_085965834.1\|111074_111834_+\|transposase	IS5 family transposase	A0A0N9SJT9	Paenibacillus_phage	2.1e-08	35.5
WP_018273862.1\|111909_113259_+\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_018273859.1\|114120_115164_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_018273858.1\|115602_116622_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_166354279.1\|118107_119433_-\|transposase	IS110 family transposase	Q9JMN8	Wolbachia_phage	2.4e-108	47.4
WP_166354051.1\|121584_122763_-	hypothetical protein	NA	NA	NA	NA
WP_166354053.1\|122746_124693_-	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_018273651.1\|124658_125690_-	P-type DNA transfer ATPase VirB11	NA	NA	NA	NA
WP_166354056.1\|125686_126832_-	TrbI/VirB10 family protein	NA	NA	NA	NA
WP_018273647.1\|128394_130080_+	ParB/RepB/Spo0J family partition protein	NA	NA	NA	NA
WP_166354058.1\|130172_130649_+	hypothetical protein	NA	NA	NA	NA
WP_109866565.1\|131166_132295_+\|transposase	IS3-like element ISRj2 family transposase	A0A2P1JR32	Mycobacterium_phage	1.2e-15	34.2
WP_166354060.1\|132924_133338_+	hypothetical protein	NA	NA	NA	NA
WP_038975252.1\|133735_134323_+	hypothetical protein	NA	NA	NA	NA
WP_018273626.1\|138436_139771_+\|transposase	IS5 family transposase	K4ICS3	Acidithiobacillus_phage	8.1e-48	43.2
WP_018272321.1\|142120_143464_-\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_018273628.1\|145026_145464_+	DUF4440 domain-containing protein	NA	NA	NA	NA
WP_166354062.1\|145907_147467_-	hypothetical protein	NA	NA	NA	NA
WP_166353173.1\|148061_149190_+\|transposase	IS3 family transposase	A0A2P1JR32	Mycobacterium_phage	5.7e-18	33.0
WP_041482974.1\|149836_150076_-	hypothetical protein	NA	NA	NA	NA
WP_080650490.1\|150672_151461_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_166354064.1\|151453_152086_-	HAD-IA family hydrolase	NA	NA	NA	NA
WP_166354066.1\|152326_153445_-	hypothetical protein	K7Y9W2	Megavirus	1.4e-16	30.7
WP_026193427.1\|153462_154458_-	LD-carboxypeptidase	NA	NA	NA	NA
WP_018273959.1\|155262_156945_+	nodulation protein NodU	M1ICZ5	Pelagibacter_phage	2.1e-29	27.1
WP_018273626.1\|157511_158846_+\|transposase	IS5 family transposase	K4ICS3	Acidithiobacillus_phage	8.1e-48	43.2
WP_041482973.1\|159039_159303_-	hypothetical protein	NA	NA	NA	NA
WP_018272321.1\|160543_161887_+\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_166354068.1\|162189_162393_-	hypothetical protein	NA	NA	NA	NA
WP_141382157.1\|163011_163194_+	hypothetical protein	NA	NA	NA	NA
WP_166354070.1\|163307_164231_+	radical SAM protein	H6SUD9	Campylobacter_virus	7.0e-06	25.8
WP_157183508.1\|164232_165165_+	DUF4097 family beta strand repeat protein	NA	NA	NA	NA
WP_018273951.1\|168697_168946_+	hypothetical protein	NA	NA	NA	NA
WP_166354072.1\|169564_170647_+	Tat pathway signal protein	NA	NA	NA	NA
WP_157183507.1\|170857_171022_-	hypothetical protein	NA	NA	NA	NA
WP_018273947.1\|171398_172667_+\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	3.3e-91	45.4
WP_166354074.1\|172696_173740_-	hypothetical protein	NA	NA	NA	NA
WP_018273942.1\|174435_174942_-	hypothetical protein	NA	NA	NA	NA
WP_080650487.1\|174938_175295_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_018272321.1\|175725_177069_-\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_051110224.1\|178824_180006_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_018273704.1\|180045_180336_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_018273703.1\|180437_180974_+	peptidoglycan-binding protein	A0A2L0HNW5	Microbacterium_phage	1.3e-07	36.3
WP_018273699.1\|182564_183725_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_166354076.1\|184874_185165_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	1.2e-07	37.5
WP_166354078.1\|185145_185619_-\|transposase	transposase	A0A0P0ZBP6	Stx2-converting_phage	3.0e-05	58.1
WP_018273727.1\|187030_187624_+	HdeD family acid-resistance protein	NA	NA	NA	NA
WP_166354080.1\|188782_189073_-	DUF2274 domain-containing protein	NA	NA	NA	NA
WP_166354082.1\|189636_190299_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_080660085.1\|190295_190943_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_166342308.1\|191011_191881_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_035677891.1\|191931_192666_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.3e-33	41.4
WP_166354084.1\|192698_193715_-	DUF4392 domain-containing protein	NA	NA	NA	NA
WP_166342310.1\|193711_195025_-	selenocysteine synthase	NA	NA	NA	NA
WP_166342311.1\|195231_196278_-	DUF4392 domain-containing protein	NA	NA	NA	NA
WP_081494222.1\|196304_197837_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_038975121.1\|197833_198805_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	1.1e-14	26.9
WP_028181902.1\|198915_199833_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_166342313.1\|199956_200805_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_018273723.1\|200829_201495_+	amino acid ABC transporter permease	NA	NA	NA	NA
WP_028181903.1\|201491_202142_+	amino acid ABC transporter permease	NA	NA	NA	NA
WP_166354086.1\|202150_202957_+	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.8e-32	40.3
WP_166353121.1\|204708_205838_-\|transposase	IS3 family transposase	A0A2P1JR32	Mycobacterium_phage	7.0e-16	34.2
WP_026192128.1\|205991_207056_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_166354280.1\|208617_209490_-	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
WP_166345060.1\|210035_211100_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_166354088.1\|211732_212716_-	ParB/RepB/Spo0J family partition protein	NA	NA	NA	NA
WP_166354282.1\|212705_213470_-	ParA family protein	A0A1X9I765	Streptococcus_phage	4.7e-08	26.2
WP_018273734.1\|214300_215320_+\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	3.3e-09	28.3
WP_166354090.1\|215819_216233_-	DNA-binding protein	Q1MVE8	Enterobacteria_phage	2.4e-35	58.7
WP_166354092.1\|216460_216718_+	WGR domain-containing protein	NA	NA	NA	NA
WP_166354094.1\|216690_216867_-	hypothetical protein	NA	NA	NA	NA
WP_018273795.1\|216928_217240_-	DUF736 domain-containing protein	NA	NA	NA	NA
WP_166354096.1\|218254_219487_-	replication initiation protein RepC	L7TKN6	Rhizobium_phage	2.4e-22	27.2
WP_166354098.1\|219750_220782_-	plasmid partitioning protein RepB	A0A240F4U0	Ochrobactrum_phage	1.4e-60	41.0
WP_166354284.1\|220766_221960_-	plasmid partitioning protein RepA	A0A240F4U1	Ochrobactrum_phage	5.3e-131	60.5
WP_166354100.1\|222327_222678_-	hypothetical protein	NA	NA	NA	NA
WP_100213571.1\|223134_224076_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	9.6e-11	25.4
WP_166354102.1\|224180_224339_-	hypothetical protein	NA	NA	NA	NA
WP_166354104.1\|224478_224724_+	type II toxin-antitoxin system VapB family antitoxin	NA	NA	NA	NA
WP_166354106.1\|224723_225119_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_166354108.1\|225646_226768_+	DUF1612 and helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_166354110.1\|227057_227378_+	hypothetical protein	NA	NA	NA	NA
WP_166354112.1\|227537_227726_-	hypothetical protein	NA	NA	NA	NA
WP_166354114.1\|227749_227929_-	DUF736 domain-containing protein	NA	NA	NA	NA
WP_166354116.1\|227983_230464_+	DEAD/DEAH box helicase family protein	A0A2K9R7J3	Dishui_lake_phycodnavirus	1.1e-32	30.6
WP_166354118.1\|230864_232019_-	TniQ family protein	NA	NA	NA	NA
WP_166354120.1\|232015_232873_-	AAA family ATPase	NA	NA	NA	NA
WP_166354122.1\|232874_234524_-\|transposase	transposase	NA	NA	NA	NA
WP_166354124.1\|234619_235714_+	DUF1612 and helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_028152779.1\|235720_235999_-	DUF2285 domain-containing protein	NA	NA	NA	NA
WP_028152778.1\|236240_236978_+	hypothetical protein	NA	NA	NA	NA
WP_038953874.1\|236974_237889_+	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_028152777.1\|238092_238410_-	DUF736 domain-containing protein	NA	NA	NA	NA
WP_166354126.1\|239064_239991_-	DUF1738 domain-containing protein	A0A1V0EEV1	Caulobacter_phage	9.2e-75	49.8
WP_144030572.1\|240073_240295_+	hypothetical protein	NA	NA	NA	NA
WP_028152775.1\|240329_240917_-	hypothetical protein	NA	NA	NA	NA
WP_166354128.1\|241311_241725_-	hypothetical protein	NA	NA	NA	NA
WP_166353121.1\|243246_244375_+\|transposase	IS3 family transposase	A0A2P1JR32	Mycobacterium_phage	7.0e-16	34.2

DBSCAN-SWA_3

304468 : 329096

Mycobacterium_phage(40.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_026192128.1\|304468_305533_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_166354187.1\|305699_307838_-	hypothetical protein	NA	NA	NA	NA
WP_085967151.1\|308550_309680_-\|transposase	IS3 family transposase	A0A2P1JR32	Mycobacterium_phage	5.7e-18	33.0
WP_166354189.1\|310444_311896_+	O-antigen ligase family protein	NA	NA	NA	NA
WP_166354191.1\|311892_313017_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_166354193.1\|313079_313325_-	hypothetical protein	NA	NA	NA	NA
WP_166354195.1\|313408_314866_+	lipopolysaccharide biosynthesis protein	NA	NA	NA	NA
WP_038952271.1\|314969_316238_-\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	3.9e-92	45.9
WP_166353985.1\|316972_317293_+	hypothetical protein	NA	NA	NA	NA
WP_018273859.1\|317671_318715_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_166354197.1\|320248_321283_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_166354199.1\|321332_322049_-	sugar transferase	NA	NA	NA	NA
WP_166354201.1\|322223_322418_+	hypothetical protein	NA	NA	NA	NA
WP_166354203.1\|322507_322750_+\|transposase	transposase	NA	NA	NA	NA
WP_166354290.1\|322730_322871_+\|transposase	transposase	NA	NA	NA	NA
WP_166354205.1\|323136_324366_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_166354207.1\|324942_326388_+	hypothetical protein	NA	NA	NA	NA
WP_166354209.1\|326623_327064_+\|transposase	transposase	A0A0P0ZBP6	Stx2-converting_phage	3.7e-05	41.8
WP_166354211.1\|327127_327397_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	1.0e-13	40.9
WP_166354213.1\|327497_329096_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	2.3e-65	34.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP049701

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3682 : 69722

Ochrobactrum_phage(22.22%)

transposase,integrase

attL 7236:7253|attR 63065:63082

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_166354311.1\|3682_4711_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_166354313.1\|4996_6025_+\|transposase	IS110 family transposase	NA	NA	NA	NA
7236:7253	attL	NA	NA	NA	NA
WP_166354493.1\|11363_13742_-	S8 family peptidase	NA	NA	NA	NA
WP_166354495.1\|13803_14874_-	AAA family ATPase	G8DDJ2	Micromonas_pusilla_virus	1.5e-15	31.1
WP_166354315.1\|15760_16702_-	DUF1403 family protein	NA	NA	NA	NA
WP_038381008.1\|17011_17266_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_166354317.1\|17265_17673_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_028153009.1\|17783_18038_+	type II toxin-antitoxin system VapB family antitoxin	NA	NA	NA	NA
WP_035696746.1\|18037_18424_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_166354319.1\|18426_19500_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_166354321.1\|20049_20955_-	DUF3991 domain-containing protein	NA	NA	NA	NA
WP_050995298.1\|21112_22390_-	plasmid replication protein RepCa2	NA	NA	NA	NA
WP_028180948.1\|22627_23689_-	plasmid partitioning protein RepB	A0A240F4U0	Ochrobactrum_phage	4.3e-36	33.2
WP_035696734.1\|23673_24897_-	plasmid partitioning protein RepA	A0A240F4U1	Ochrobactrum_phage	7.9e-90	44.7
WP_166354323.1\|25294_25921_+	autoinducer synthesis protein	NA	NA	NA	NA
WP_166354325.1\|25926_26895_+	P-type conjugative transfer ATPase TrbB	NA	NA	NA	NA
WP_166354327.1\|26884_27253_+	conjugal transfer protein	NA	NA	NA	NA
WP_166354329.1\|27245_27545_+	conjugal transfer protein TrbD	NA	NA	NA	NA
WP_060907882.1\|29978_30776_+	P-type conjugative transfer protein TrbJ	NA	NA	NA	NA
WP_060907883.1\|30772_30955_+	entry exclusion protein TrbK	NA	NA	NA	NA
WP_166354331.1\|30972_32133_+	P-type conjugative transfer protein TrbL	NA	NA	NA	NA
WP_060909066.1\|32248_33874_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	5.5e-91	39.1
WP_011090953.1\|33927_34284_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_041483034.1\|34280_34559_-\|transposase	transposase	NA	NA	NA	NA
WP_011084467.1\|35960_36164_+	hypothetical protein	NA	NA	NA	NA
WP_166354333.1\|36877_38404_-	DUF1521 domain-containing protein	NA	NA	NA	NA
WP_166354335.1\|39456_39627_+	hypothetical protein	NA	NA	NA	NA
WP_014498042.1\|39656_39848_+	hypothetical protein	NA	NA	NA	NA
WP_166354337.1\|40184_41414_-	EAL domain-containing protein	NA	NA	NA	NA
WP_038381030.1\|41781_42024_+	hypothetical protein	NA	NA	NA	NA
WP_038381029.1\|42033_42231_-	hypothetical protein	NA	NA	NA	NA
WP_038381037.1\|42227_42515_-\|transposase	transposase	NA	NA	NA	NA
WP_166354339.1\|45168_46233_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_028182304.1\|46242_46767_-	hypothetical protein	NA	NA	NA	NA
WP_028154529.1\|47031_48441_+	DUF2130 domain-containing protein	NA	NA	NA	NA
WP_035680878.1\|48539_49313_-	hypothetical protein	NA	NA	NA	NA
WP_011084668.1\|49585_50128_+	hypothetical protein	NA	NA	NA	NA
WP_080586306.1\|51912_52185_+	hypothetical protein	NA	NA	NA	NA
WP_166354341.1\|52250_53669_-\|transposase	transposase family protein	NA	NA	NA	NA
WP_109866565.1\|53845_54974_+\|transposase	IS3-like element ISRj2 family transposase	A0A2P1JR32	Mycobacterium_phage	1.2e-15	34.2
WP_026192128.1\|55599_56664_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_166354343.1\|56988_58620_-	EAL domain-containing protein	A0A1B0Z064	Pseudomonas_phage	1.5e-06	32.5
WP_038381032.1\|59168_60254_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_166354497.1\|60520_61924_-	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	4.4e-20	34.7
WP_166353263.1\|63305_64607_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.5e-33	31.4
63065:63082	attR	NA	NA	NA	NA
WP_166354345.1\|65391_65664_+	hypothetical protein	NA	NA	NA	NA
WP_028154199.1\|65864_66722_-	DUF1738 domain-containing protein	A0A1V0EEV1	Caulobacter_phage	5.0e-51	40.9
WP_166354347.1\|66923_67451_+	hypothetical protein	NA	NA	NA	NA
WP_166354349.1\|68645_69722_-\|transposase	IS630-like element ISRj1 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

83996 : 173911

Mycobacterium_phage(28.57%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_166341375.1\|83996_85061_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_018273921.1\|85429_85807_-	hypothetical protein	NA	NA	NA	NA
WP_166354359.1\|87567_88680_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_038952271.1\|88987_90256_-\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	3.9e-92	45.9
WP_166353121.1\|90639_91769_-\|transposase	IS3 family transposase	A0A2P1JR32	Mycobacterium_phage	7.0e-16	34.2
WP_166354361.1\|92589_94236_+	hypothetical protein	NA	NA	NA	NA
WP_166354363.1\|94347_94503_+	hypothetical protein	NA	NA	NA	NA
WP_166354501.1\|96087_96753_+	hypothetical protein	NA	NA	NA	NA
WP_166354365.1\|96758_98321_+	peptidase S53	A0A1V0SLL0	Klosneuvirus	9.5e-56	35.2
WP_011090937.1\|99064_99826_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.3e-66	53.1
WP_166349154.1\|99844_101386_-\|transposase	IS21-like element ISFK1 family transposase	K4I413	Acidithiobacillus_phage	7.8e-127	44.3
WP_166354306.1\|103346_103634_-	hypothetical protein	NA	NA	NA	NA
WP_129557650.1\|103901_105031_-\|transposase	IS3 family transposase	A0A2P1JR32	Mycobacterium_phage	9.7e-18	33.0
WP_166346112.1\|105126_106266_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_166354367.1\|106555_106876_-	DUF3768 domain-containing protein	NA	NA	NA	NA
WP_166354369.1\|107237_107546_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_166354371.1\|109619_110087_-	hypothetical protein	NA	NA	NA	NA
WP_166354373.1\|111595_113665_-	recombinase family protein	A0A1B2LRQ3	Wolbachia_phage	6.3e-07	21.8
WP_161536881.1\|113657_113837_-	hypothetical protein	NA	NA	NA	NA
WP_166354375.1\|115759_116629_-	porin family protein	NA	NA	NA	NA
WP_011090916.1\|117072_117741_+	AAA family ATPase	A2I303	Vibrio_virus	1.5e-10	32.7
WP_014498616.1\|117928_118741_+	hypothetical protein	NA	NA	NA	NA
WP_161536880.1\|119104_119707_-	plasmid pRiA4b ORF-3 family protein	NA	NA	NA	NA
WP_161536881.1\|120210_120390_+	hypothetical protein	NA	NA	NA	NA
WP_166349160.1\|120382_122458_+	recombinase family protein	A0A1B2LRQ3	Wolbachia_phage	6.4e-07	21.8
WP_166354503.1\|125641_127354_+	hypothetical protein	NA	NA	NA	NA
WP_018273740.1\|129360_129960_-	UPF0149 family protein	NA	NA	NA	NA
WP_035681142.1\|130007_131558_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	9.0e-83	38.9
WP_018273742.1\|131608_131965_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	7.0e-15	41.7
WP_166354377.1\|132580_133375_-	hypothetical protein	NA	NA	NA	NA
WP_166350342.1\|134318_134618_+	DUF3892 domain-containing protein	NA	NA	NA	NA
WP_166354308.1\|135014_135266_+	hypothetical protein	NA	NA	NA	NA
WP_166354379.1\|135275_136559_-	cystathionine gamma-synthase family protein	NA	NA	NA	NA
WP_018272321.1\|140094_141438_-\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_011090960.1\|143091_143295_+	cold-shock protein	A0A1X9IGI9	Lactococcus_phage	3.9e-10	48.4
WP_014498624.1\|143680_143911_-	hypothetical protein	NA	NA	NA	NA
WP_026192128.1\|144652_145717_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_014498626.1\|147112_147391_+	hypothetical protein	NA	NA	NA	NA
WP_166354381.1\|147709_147952_+	hypothetical protein	NA	NA	NA	NA
WP_035680720.1\|153661_153919_-	WGR domain-containing protein	NA	NA	NA	NA
WP_014497999.1\|154488_154710_+	hypothetical protein	NA	NA	NA	NA
WP_011084509.1\|155231_155576_-	hypothetical protein	NA	NA	NA	NA
WP_011090953.1\|156121_156478_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_011084514.1\|159110_160175_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_166354505.1\|161526_163278_+	gamma-glutamyltransferase	NA	NA	NA	NA
WP_060909225.1\|163274_164138_+	hypothetical protein	NA	NA	NA	NA
WP_011090946.1\|164128_165175_+	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_166354383.1\|166658_167009_-	hypothetical protein	NA	NA	NA	NA
WP_162130962.1\|167352_167679_+	hypothetical protein	NA	NA	NA	NA
WP_060909220.1\|167905_169039_+	FAD-dependent oxidoreductase	A0A2K9L3K5	Tupanvirus	2.4e-08	24.4
WP_109866565.1\|169656_170786_-\|transposase	IS3-like element ISRj2 family transposase	A0A2P1JR32	Mycobacterium_phage	1.2e-15	34.2
WP_014498651.1\|173455_173911_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_3

185884 : 269041

Caulobacter_phage(22.22%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_166342054.1\|185884_187228_+\|transposase	IS1380-like element ISBdi2 family transposase	NA	NA	NA	NA
WP_018272321.1\|187506_188850_+\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_011091022.1\|190669_190966_-	DUF3892 domain-containing protein	NA	NA	NA	NA
WP_018273862.1\|195221_196571_+\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_085971921.1\|196620_197381_-\|transposase	IS5-like element ISBj2 family transposase	A0A0N9SJT9	Paenibacillus_phage	3.6e-08	35.5
WP_014490241.1\|200058_200310_+	hypothetical protein	NA	NA	NA	NA
WP_011082837.1\|202941_203265_-	hypothetical protein	NA	NA	NA	NA
WP_036046798.1\|203486_204551_-	ribonucleotide-diphosphate reductase subunit beta	A0A0K1LM33	Caulobacter_phage	4.1e-103	55.9
WP_166354507.1\|204550_206734_-	ribonucleoside-diphosphate reductase subunit alpha	A0A0K1LMZ5	Caulobacter_phage	5.5e-227	66.3
WP_043900134.1\|207474_208116_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011084514.1\|208588_209653_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_166354385.1\|211432_211600_+	hypothetical protein	NA	NA	NA	NA
WP_014490253.1\|213709_214021_-	hypothetical protein	NA	NA	NA	NA
WP_011082852.1\|215415_216648_-	cytochrome P450	NA	NA	NA	NA
WP_011082853.1\|216774_218775_-	cytochrome c	NA	NA	NA	NA
WP_011082854.1\|219802_220093_+	hypothetical protein	NA	NA	NA	NA
WP_016841328.1\|220663_220804_-	hypothetical protein	NA	NA	NA	NA
WP_166354387.1\|221816_223577_-	oleate hydratase	NA	NA	NA	NA
WP_011082858.1\|223622_224381_-	glucose 1-dehydrogenase	W8CYX9	Bacillus_phage	2.5e-09	36.6
WP_166354389.1\|225563_226406_+	acetoacetate decarboxylase family protein	NA	NA	NA	NA
WP_011082861.1\|226502_226790_+	hypothetical protein	NA	NA	NA	NA
WP_071916957.1\|228516_228768_+	hypothetical protein	R9TP69	Rhizobium_phage	2.5e-11	51.5
WP_011082864.1\|228850_229036_-	hypothetical protein	NA	NA	NA	NA
WP_011082865.1\|229330_229564_+	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_166354509.1\|229988_230402_+\|transposase	transposase	NA	NA	NA	NA
WP_166354391.1\|230398_230695_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_018273862.1\|230731_232081_-\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_166354511.1\|233073_234633_-	beta-(1-6) glucans synthase	NA	NA	NA	NA
WP_166354393.1\|235287_236322_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_166354395.1\|237012_237912_+	ABC transporter permease	NA	NA	NA	NA
WP_166354397.1\|237901_238639_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	9.8e-19	32.1
WP_166354399.1\|238678_239803_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_166354401.1\|241311_241752_-	hypothetical protein	NA	NA	NA	NA
WP_166354403.1\|241890_242061_-	hypothetical protein	NA	NA	NA	NA
WP_166354405.1\|242810_243878_-	DNA primase	A0A0H5AWB1	Pseudomonas_phage	2.1e-06	33.3
WP_166354407.1\|248476_248890_-	hypothetical protein	NA	NA	NA	NA
WP_166354409.1\|251286_252483_-	DUF932 domain-containing protein	A0A1V0DX75	Synechococcus_virus	3.8e-73	41.4
WP_166354411.1\|252958_253198_+	hypothetical protein	NA	NA	NA	NA
WP_166354413.1\|253946_254249_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_166354415.1\|254593_254878_+	hypothetical protein	NA	NA	NA	NA
WP_166354417.1\|255465_256479_-	TIR domain-containing protein	NA	NA	NA	NA
WP_166354419.1\|256529_257999_-	SAVED domain-containing protein	NA	NA	NA	NA
WP_166354421.1\|258008_258629_-	hypothetical protein	NA	NA	NA	NA
WP_166354423.1\|258376_258880_-	hypothetical protein	NA	NA	NA	NA
WP_166354425.1\|258883_260335_-	ThiF family adenylyltransferase	NA	NA	NA	NA
WP_166354427.1\|260331_260799_-	hypothetical protein	NA	NA	NA	NA
WP_166354429.1\|260795_261836_-	hypothetical protein	NA	NA	NA	NA
WP_026192128.1\|262255_263320_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_166354431.1\|264261_264711_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_166354433.1\|264707_265007_-	hypothetical protein	NA	NA	NA	NA
WP_166354435.1\|265359_265554_+	hypothetical protein	NA	NA	NA	NA
WP_166354437.1\|265566_267225_+	recombinase family protein	R9TP69	Rhizobium_phage	1.1e-89	38.1
WP_018272321.1\|267697_269041_-\|transposase	IS1380 family transposase	NA	NA	NA	NA

DBSCAN-SWA_4

282572 : 374200

uncultured_virus(15.79%)

transposase,integrase

attL 333495:333554|attR 390105:390588

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_166354447.1\|282572_282920_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_166354515.1\|283454_284102_-\|integrase	tyrosine-type recombinase/integrase	B3GAN2	uncultured_virus	3.7e-06	25.6
WP_011084514.1\|284150_285215_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_166354449.1\|285234_285600_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_035680914.1\|285596_286574_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_026193374.1\|286570_287788_-\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	6.8e-09	27.5
WP_166354451.1\|292257_292737_+\|transposase	transposase family protein	NA	NA	NA	NA
WP_166354309.1\|295191_296349_+	zinc-binding dehydrogenase	NA	NA	NA	NA
WP_166354311.1\|298595_299624_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_166354313.1\|299909_300938_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_166354493.1\|306276_308655_-	S8 family peptidase	NA	NA	NA	NA
WP_166354495.1\|308716_309787_-	AAA family ATPase	G8DDJ2	Micromonas_pusilla_virus	1.5e-15	31.1
WP_166354315.1\|310673_311615_-	DUF1403 family protein	NA	NA	NA	NA
WP_166354453.1\|312343_313606_-	hypothetical protein	NA	NA	NA	NA
WP_166354455.1\|318252_318648_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_035697117.1\|319084_320176_+	hypothetical protein	NA	NA	NA	NA
WP_166354457.1\|320189_321362_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_166354459.1\|321787_322729_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	1.6e-10	25.4
WP_050995343.1\|322921_324127_+	plasmid partitioning protein RepA	A0A240F4U1	Ochrobactrum_phage	4.4e-117	56.4
WP_035678959.1\|324129_325149_+	plasmid partitioning protein RepB	A0A240F4U0	Ochrobactrum_phage	8.4e-53	38.9
WP_166354461.1\|325365_326598_+	replication initiation protein RepC	L7TKN6	Rhizobium_phage	4.9e-23	27.8
WP_166354463.1\|328138_328459_-	hypothetical protein	NA	NA	NA	NA
WP_038976728.1\|328511_328778_-	hypothetical protein	NA	NA	NA	NA
WP_129557693.1\|330042_330387_-	hypothetical protein	NA	NA	NA	NA
WP_028154587.1\|330453_330750_-	hypothetical protein	NA	NA	NA	NA
WP_166354465.1\|331293_332046_-\|transposase	IS256 family transposase	NA	NA	NA	NA
WP_049810453.1\|332642_333203_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.4e-41	46.2
333495:333554	attL	NA	NA	NA	NA
WP_011090953.1\|333978_334335_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_060913184.1\|334331_334610_-\|transposase	transposase	NA	NA	NA	NA
WP_166354296.1\|341871_343089_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_018273895.1\|344774_345656_-	aldo/keto reductase	NA	NA	NA	NA
WP_157785840.1\|347588_347753_+	hypothetical protein	NA	NA	NA	NA
WP_129557320.1\|347910_348033_-	hypothetical protein	NA	NA	NA	NA
WP_166354467.1\|348178_348322_-	hypothetical protein	NA	NA	NA	NA
WP_129557670.1\|349253_350383_-\|transposase	IS3-like element ISRj2 family transposase	A0A2P1JR32	Mycobacterium_phage	5.3e-16	34.2
WP_018273742.1\|352463_352820_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	7.0e-15	41.7
WP_011090937.1\|353000_353762_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.3e-66	53.1
WP_166341218.1\|353780_355322_-\|transposase	IS21-like element ISFK1 family transposase	K4I413	Acidithiobacillus_phage	6.0e-127	44.3
WP_166354469.1\|355521_357021_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.9e-82	39.0
WP_018273740.1\|357068_357668_+	UPF0149 family protein	NA	NA	NA	NA
WP_166354517.1\|357833_358223_-	hypothetical protein	NA	NA	NA	NA
WP_014490254.1\|358219_358525_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_166341218.1\|358731_360273_+\|transposase	IS21-like element ISFK1 family transposase	K4I413	Acidithiobacillus_phage	6.0e-127	44.3
WP_028154610.1\|360887_361913_-\|integrase	tyrosine-type recombinase/integrase	B3GAN2	uncultured_virus	4.1e-07	26.6
WP_166353992.1\|361909_362887_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_026193374.1\|362883_364101_-\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	6.8e-09	27.5
WP_080586907.1\|366318_366684_-\|transposase	transposase	NA	NA	NA	NA
WP_166354471.1\|367381_368620_+\|integrase	tyrosine-type recombinase/integrase	A0A1I9SC88	Mycobacterium_phage	1.8e-09	28.3
WP_166354473.1\|368619_369534_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_035696431.1\|369530_370544_+\|integrase	site-specific integrase	A0A2L1IV36	Escherichia_phage	6.7e-10	30.3
WP_166354475.1\|371208_372552_-\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_166354477.1\|372766_374200_-\|transposase	IS4 family transposase	Q9JMP3	Wolbachia_phage	5.4e-66	35.6
390105:390588	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP049702

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP049699

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP049700

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NZ_CP049701

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection