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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP040028 Klebsiella pneumoniae strain KPC160121 chromosome, complete genome 1 crisprs csa3,cas3,DEDDh,DinG,RT,WYL 0 0 11 0
NZ_CP040029 Klebsiella pneumoniae strain KPC160121 plasmid pIncC-L121, complete sequence 0 crisprs DEDDh 0 0 2 0
NZ_CP040031 Klebsiella pneumoniae strain KPC160121 plasmid pOXA48-L121, complete sequence 0 crisprs RT 0 0 0 0
NZ_CP040030 Klebsiella pneumoniae strain KPC160121 plasmid pQnr-L121, complete sequence 0 crisprs csa3,RT 0 0 1 0
NZ_CP040032 Klebsiella pneumoniae strain KPC160121 plasmid pCol4401-L121, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP040028
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040028_1 4537957-4538051 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 445118 : 478376 34 uncultured_Caudovirales_phage(75.0%) integrase,capsid,tail,tRNA,portal,terminase,head,protease attL 462726:462743|attR 478721:478738
DBSCAN-SWA_2 1233655 : 1279890 61 Salmonella_phage(83.72%) integrase,capsid,tail,lysis,portal,terminase,coat,plate,head,tRNA attL 1231949:1231995|attR 1268516:1268562
DBSCAN-SWA_3 1384606 : 1451036 73 Salmonella_phage(31.37%) integrase,tail,transposase,terminase,holin,protease attL 1385601:1385618|attR 1453784:1453801
DBSCAN-SWA_4 1759337 : 1766242 6 Planktothrix_phage(33.33%) tRNA NA
DBSCAN-SWA_5 1810363 : 1823680 12 Enterobacteria_phage(22.22%) transposase NA
DBSCAN-SWA_6 2876055 : 2886942 9 Escherichia_phage(87.5%) NA NA
DBSCAN-SWA_7 3111872 : 3153614 62 Klebsiella_phage(34.04%) terminase,integrase attL 3144727:3144741|attR 3150736:3150750
DBSCAN-SWA_8 3499370 : 3525324 39 Pectobacterium_phage(22.22%) integrase,protease,tail,head attL 3510620:3510635|attR 3525385:3525400
DBSCAN-SWA_9 3610093 : 3695843 87 Salmonella_phage(50.98%) capsid,integrase,tail,tRNA,lysis,portal,terminase,plate,head,protease attL 3665619:3665637|attR 3695918:3695936
DBSCAN-SWA_10 4274670 : 4286324 15 Enterobacteria_phage(70.0%) integrase attL 4274522:4274535|attR 4278735:4278748
DBSCAN-SWA_11 4754507 : 4760332 8 Enterobacteria_phage(100.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP040029
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 29818 : 53569 23 Enterobacteria_phage(33.33%) transposase,integrase attL 29754:29813|attR 53575:54397
DBSCAN-SWA_2 126302 : 160896 38 Salmonella_phage(61.54%) transposase,integrase attL 121948:121968|attR 170691:170711
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_CP040030
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1727 : 62949 60 uncultured_Caudovirales_phage(26.32%) transposase,integrase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage