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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP040033 Klebsiella pneumoniae strain KPC160117 chromosome, complete genome 1 crisprs csa3,cas3,DEDDh,DinG,RT,WYL 0 0 11 0
NZ_CP040035 Klebsiella pneumoniae strain KPC160117 plasmid pQnr-L117, complete sequence 0 crisprs csa3,RT 0 0 1 0
NZ_CP040034 Klebsiella pneumoniae strain KPC160117 plasmid pIncC-L117, complete sequence 0 crisprs DEDDh 0 0 2 0
NZ_CP040036 Klebsiella pneumoniae strain KPC160117 plasmid pOXA48-L117, complete sequence 0 crisprs RT 0 0 0 0
NZ_CP040037 Klebsiella pneumoniae strain KPC160117 plasmid pCol4401-L117, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP040033
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040033_1 4537188-4537282 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 445118 : 478376 34 uncultured_Caudovirales_phage(75.0%) portal,capsid,protease,tRNA,integrase,head,terminase,tail attL 462726:462743|attR 478721:478738
DBSCAN-SWA_2 1233655 : 1279890 61 Salmonella_phage(83.72%) portal,plate,capsid,tRNA,integrase,head,coat,terminase,lysis,tail attL 1231949:1231995|attR 1268516:1268562
DBSCAN-SWA_3 1384606 : 1451036 73 Salmonella_phage(31.37%) transposase,protease,integrase,holin,terminase,tail attL 1385601:1385618|attR 1453784:1453801
DBSCAN-SWA_4 1759337 : 1766242 6 Planktothrix_phage(33.33%) tRNA NA
DBSCAN-SWA_5 1809586 : 1822903 12 Enterobacteria_phage(22.22%) transposase NA
DBSCAN-SWA_6 2875278 : 2886165 9 Escherichia_phage(87.5%) NA NA
DBSCAN-SWA_7 3111095 : 3152837 62 Klebsiella_phage(34.04%) terminase,integrase attL 3143950:3143964|attR 3149959:3149973
DBSCAN-SWA_8 3498593 : 3524547 39 Pectobacterium_phage(22.22%) integrase,head,protease,tail attL 3509843:3509858|attR 3524608:3524623
DBSCAN-SWA_9 3609316 : 3695066 87 Salmonella_phage(50.98%) portal,plate,capsid,protease,tRNA,integrase,head,terminase,lysis,tail attL 3664842:3664860|attR 3695141:3695159
DBSCAN-SWA_10 4273893 : 4285547 15 Enterobacteria_phage(70.0%) integrase attL 4273745:4273758|attR 4277958:4277971
DBSCAN-SWA_11 4753738 : 4759563 8 Enterobacteria_phage(100.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP040035
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1727 : 62949 60 uncultured_Caudovirales_phage(26.32%) integrase,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_CP040034
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 29818 : 53569 23 Enterobacteria_phage(33.33%) transposase,integrase attL 29754:29813|attR 53575:54397
DBSCAN-SWA_2 126302 : 160896 38 Salmonella_phage(61.54%) transposase,integrase attL 121948:121968|attR 170691:170711
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage