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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP040026 Klebsiella pneumoniae strain KPC160132 plasmid pIncFI-L132, complete sequence 0 crisprs DEDDh,PD-DExK 0 0 2 0
NZ_CP040025 Klebsiella pneumoniae strain KPC160132 plasmid pKpn3-L132, complete sequence 0 crisprs csa3,RT 0 0 1 0
NZ_CP040024 Klebsiella pneumoniae strain KPC160132 plasmid pIncC-L132, complete sequence 0 crisprs DEDDh 0 0 1 0
NZ_CP040027 Klebsiella pneumoniae strain KPC160132 plasmid pCol4401-L132, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP040023 Klebsiella pneumoniae strain KPC160132 chromosome, complete genome 1 crisprs csa3,cas3,RT,DEDDh,DinG,WYL 0 0 11 0

Results visualization

1. NZ_CP040026
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 98119 103 Salmonella_phage(89.77%) tail,terminase,integrase,portal attL 22164:22188|attR 39175:39199
DBSCAN-SWA_2 101232 : 109168 9 Salmonella_phage(75.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP040023
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040023_1 4560583-4560677 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 445131 : 478389 34 uncultured_Caudovirales_phage(75.0%) capsid,tRNA,integrase,head,terminase,portal,protease,tail attL 462739:462756|attR 478734:478751
DBSCAN-SWA_2 1233668 : 1279903 61 Salmonella_phage(83.72%) coat,capsid,head,integrase,tRNA,terminase,lysis,portal,tail,plate attL 1231962:1232008|attR 1268529:1268575
DBSCAN-SWA_3 1384619 : 1444326 79 Salmonella_phage(34.04%) capsid,integrase,transposase,terminase,tail attL 1393819:1393834|attR 1447027:1447042
DBSCAN-SWA_4 1783967 : 1790872 6 Planktothrix_phage(33.33%) tRNA NA
DBSCAN-SWA_5 1835849 : 1847533 11 Enterobacteria_phage(25.0%) transposase NA
DBSCAN-SWA_6 2898692 : 2909579 9 Escherichia_phage(87.5%) NA NA
DBSCAN-SWA_7 3134509 : 3176251 62 Klebsiella_phage(34.04%) terminase,integrase attL 3167364:3167378|attR 3173373:3173387
DBSCAN-SWA_8 3521996 : 3547950 39 Pectobacterium_phage(22.22%) head,integrase,tail,protease attL 3533246:3533261|attR 3548011:3548026
DBSCAN-SWA_9 3632719 : 3718469 87 Salmonella_phage(50.98%) capsid,tRNA,head,integrase,terminase,lysis,tail,protease,portal,plate attL 3688245:3688263|attR 3718544:3718562
DBSCAN-SWA_10 4297296 : 4308950 15 Enterobacteria_phage(70.0%) integrase attL 4297148:4297161|attR 4301361:4301374
DBSCAN-SWA_11 4777133 : 4782958 8 Enterobacteria_phage(100.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_CP040025
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1727 : 62949 60 uncultured_Caudovirales_phage(26.32%) integrase,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
4. NZ_CP040024
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 105886 : 140480 38 Salmonella_phage(61.54%) integrase,transposase attL 101532:101552|attR 150266:150286
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage