CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP040026	Klebsiella pneumoniae strain KPC160132 plasmid pIncFI-L132, complete sequence	0 crisprs	DEDDh,PD-DExK	2
NZ_CP040023	Klebsiella pneumoniae strain KPC160132 chromosome, complete genome	1 crisprs	csa3,cas3,RT,DEDDh,DinG,WYL	11
NZ_CP040027	Klebsiella pneumoniae strain KPC160132 plasmid pCol4401-L132, complete sequence	0 crisprs	NA	0
NZ_CP040024	Klebsiella pneumoniae strain KPC160132 plasmid pIncC-L132, complete sequence	0 crisprs	DEDDh	1
NZ_CP040025	Klebsiella pneumoniae strain KPC160132 plasmid pKpn3-L132, complete sequence	0 crisprs	csa3,RT	1

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 98119

103

Salmonella_phage(89.77%)

tail,terminase,integrase,portal

attL 22164:22188|attR 39175:39199

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039817730.1\|234_828_-	phage N-6-adenine-methyltransferase	J9Q7T2	Salmonella_phage	1.3e-98	84.8
WP_040223256.1\|1012_1846_-	hypothetical protein	J9Q7Z9	Salmonella_phage	1.0e-64	57.1
WP_014342174.1\|1971_2529_-	3'-5' exonuclease	J9Q6J8	Salmonella_phage	1.4e-86	84.2
WP_023279504.1\|2538_2958_-	hypothetical protein	J9Q743	Salmonella_phage	6.5e-52	74.1
WP_040223254.1\|3021_3666_-	AAA family ATPase	J9Q7H4	Salmonella_phage	5.2e-93	77.1
WP_074185743.1\|3665_4136_-	dihydrofolate reductase	J9Q7T1	Salmonella_phage	2.7e-70	78.7
WP_014342178.1\|4138_4534_-	hypothetical protein	J9Q7Z8	Salmonella_phage	2.6e-50	74.8
WP_014342179.1\|4553_5657_-	thymidylate synthase	J9Q6J6	Salmonella_phage	2.5e-180	79.8
WP_014342180.1\|5850_6726_-	nucleoside triphosphate pyrophosphohydrolase family protein	J9Q742	Salmonella_phage	4.5e-140	84.7
WP_014342181.1\|6803_7946_-	ribonucleotide-diphosphate reductase subunit beta	J9Q7H3	Salmonella_phage	9.0e-213	95.8
WP_040203489.1\|8076_10380_-	ribonucleoside-diphosphate reductase subunit alpha	J9Q7T0	Salmonella_phage	0.0e+00	90.8
WP_040203999.1\|10455_11025_-	hypothetical protein	J9Q7Z7	Salmonella_phage	1.4e-94	89.9
WP_072201198.1\|11034_11745_-	hypothetical protein	J9Q6J5	Salmonella_phage	3.6e-71	57.6
WP_160333948.1\|11770_12130_-	hypothetical protein	J9Q741	Salmonella_phage	2.4e-55	95.0
WP_072201193.1\|13683_13917_-	hypothetical protein	J9Q7H1	Salmonella_phage	4.4e-18	66.1
WP_014342188.1\|13916_15002_-	exonuclease	J9Q7S9	Salmonella_phage	2.0e-182	84.2
WP_014342190.1\|15499_15655_-	hypothetical protein	NA	NA	NA	NA
WP_019704555.1\|15653_17213_+	DUF4041 domain-containing protein	X5JAC1	Clostridium_phage	6.6e-57	52.3
WP_014342193.1\|17526_18171_-	hypothetical protein	J9Q739	Salmonella_phage	8.3e-99	80.7
WP_164486292.1\|18371_19589_+	RepB family plasmid replication initiator protein	J9Q7H0	Salmonella_phage	1.3e-73	47.3
WP_014342074.1\|20040_20253_-	hypothetical protein	J9Q7S8	Salmonella_phage	4.3e-28	80.0
WP_014342075.1\|20252_20867_-	hypothetical protein	J9Q7Z5	Salmonella_phage	2.3e-37	67.6
WP_014342076.1\|20950_21127_-	hypothetical protein	J9Q7G9	Salmonella_phage	4.7e-12	68.8
WP_072196934.1\|21297_22347_-	recombinase	J9Q736	Salmonella_phage	5.5e-193	96.3
22164:22188	attL	NA	NA	NA	NA
WP_019704549.1\|22376_22643_-	hypothetical protein	J9Q7G8	Salmonella_phage	1.7e-34	84.1
WP_014342079.1\|22642_23587_-	exonuclease	J9Q7S6	Salmonella_phage	1.1e-171	93.0
WP_032440516.1\|23647_24655_-	hypothetical protein	J9Q7Z3	Salmonella_phage	2.1e-144	88.3
WP_040170151.1\|24774_25206_-	hypothetical protein	J9Q6I8	Salmonella_phage	9.0e-65	90.9
WP_014342082.1\|25361_25661_-	lipoprotein	NA	NA	NA	NA
WP_023343104.1\|25671_26052_-	hypothetical protein	A0A291AWZ9	Escherichia_phage	1.0e-43	64.3
WP_014342084.1\|26291_26717_-	hypothetical protein	J9Q7S4	Salmonella_phage	8.6e-60	83.7
WP_108714635.1\|26731_30250_-	DNA polymerase III subunit alpha	J9Q7Z2	Salmonella_phage	0.0e+00	92.9
WP_032439780.1\|30430_31663_-	AAA domain-containing protein	J9Q733	Salmonella_phage	2.2e-212	86.4
WP_032443561.1\|31759_34045_-	porphyrin biosynthesis protein	J9Q7G6	Salmonella_phage	8.8e-244	62.9
WP_014342090.1\|34160_34373_-	hypothetical protein	NA	NA	NA	NA
WP_014342091.1\|34646_35027_+	transcriptional regulator	NA	NA	NA	NA
WP_040120267.1\|35021_36122_-\|integrase	site-specific integrase	A0A1P8DTG6	Proteus_phage	1.6e-17	28.4
WP_023279484.1\|36471_36831_+	hypothetical protein	NA	NA	NA	NA
WP_021313794.1\|36895_37306_-	toxin YafO	NA	NA	NA	NA
WP_040203500.1\|37315_37933_-	hypothetical protein	NA	NA	NA	NA
WP_032440523.1\|38027_38273_-	GrxA family glutaredoxin	A0A2I7SAE2	Vibrio_phage	9.1e-14	47.4
WP_040203502.1\|38269_38656_-	phage family protein	Q716B1	Shigella_phage	1.9e-45	71.2
WP_072042571.1\|38665_39511_-	phosphate starvation-inducible protein PhoH	W8D063	Erwinia_phage	4.9e-91	66.1
39175:39199	attR	NA	NA	NA	NA
WP_040203506.1\|39657_41175_+	hypothetical protein	NA	NA	NA	NA
WP_014342099.1\|42588_42978_-	hypothetical protein	NA	NA	NA	NA
WP_023279477.1\|43152_43368_-	hypothetical protein	J9Q6I3	Salmonella_phage	8.5e-24	78.6
WP_048333216.1\|43351_43474_-	hypothetical protein	J9Q729	Salmonella_phage	4.8e-08	76.5
WP_014342105.1\|43470_44793_-	putative DNA ligase	J9Q7G5	Salmonella_phage	4.8e-226	85.2
WP_050484893.1\|44792_45260_-	hypothetical protein	J9Q7R9	Salmonella_phage	7.5e-49	63.9
WP_032439773.1\|45339_46128_-	hypothetical protein	J9Q7Z0	Salmonella_phage	6.9e-71	51.1
WP_032439771.1\|46416_47583_+	hypothetical protein	NA	NA	NA	NA
WP_072196452.1\|47625_48750_-	DNA primase	J9Q720	Salmonella_phage	6.3e-203	91.6
WP_032440528.1\|48896_50237_-	AAA family ATPase	J9Q7G4	Salmonella_phage	5.4e-241	96.0
WP_040203349.1\|50301_51027_-	hypothetical protein	J9Q7R8	Salmonella_phage	9.6e-128	88.4
WP_077257223.1\|51271_52057_+	DUF2971 domain-containing protein	J9Q7Y9	Salmonella_phage	1.8e-07	24.8
WP_014342115.1\|52102_52459_-	hypothetical protein	J9Q7G3	Salmonella_phage	1.4e-44	97.9
WP_021313115.1\|52464_53130_-	AAA family ATPase	J9Q7R7	Salmonella_phage	2.9e-102	83.7
WP_014342117.1\|53370_53892_+	hypothetical protein	NA	NA	NA	NA
WP_014342118.1\|53946_54102_-	hypothetical protein	J9Q7G2	Salmonella_phage	1.3e-13	64.7
WP_040203611.1\|54094_54346_-	hypothetical protein	J9Q7R6	Salmonella_phage	4.5e-24	73.5
WP_040203608.1\|54348_55041_-	membrane protein	J9Q7Y7	Salmonella_phage	3.9e-118	88.3
WP_004109805.1\|55054_55378_-	hypothetical protein	J9Q6E7	Salmonella_phage	2.3e-49	95.3
WP_048333199.1\|55468_56914_-\|tail	tail fiber domain-containing protein	A0A0H4TGH1	Klebsiella_phage	1.0e-40	38.6
WP_108714630.1\|69187_69799_-\|tail	tail assembly protein	J9Q7F8	Salmonella_phage	4.2e-76	71.6
WP_004109817.1\|69786_70584_-\|tail	tail protein	J9Q7R4	Salmonella_phage	5.4e-140	85.3
WP_165564217.1\|70576_71275_-\|tail	phage minor tail protein L	J9Q7Y5	Salmonella_phage	9.9e-122	87.0
WP_032423010.1\|71361_71697_-\|tail	tail protein	J9Q6E1	Salmonella_phage	2.6e-51	84.5
WP_108714631.1\|71740_76270_-	tape measure protein	J9Q712	Salmonella_phage	0.0e+00	70.0
WP_014342129.1\|76277_76502_-	hypothetical protein	J9Q7F7	Salmonella_phage	2.0e-31	93.2
WP_004109835.1\|76627_76945_-	hypothetical protein	J9Q7R3	Salmonella_phage	1.8e-46	93.3
WP_004109839.1\|77006_77753_-	Ig domain-containing protein	J9Q7Y4	Salmonella_phage	3.7e-106	83.0
WP_108714632.1\|77820_78213_-	hypothetical protein	J9Q6D8	Salmonella_phage	2.9e-46	67.5
WP_021313126.1\|78214_78688_-	hypothetical protein	J9Q711	Salmonella_phage	1.9e-76	93.6
WP_004109848.1\|78678_79023_-	hypothetical protein	J9Q7F6	Salmonella_phage	7.4e-54	92.1
WP_040223264.1\|79120_79954_-	hypothetical protein	J9Q7R2	Salmonella_phage	1.6e-131	84.1
WP_160552724.1\|79953_80334_-	hypothetical protein	J9Q7Y3	Salmonella_phage	3.4e-52	81.7
WP_014342133.1\|80271_80460_+	hypothetical protein	NA	NA	NA	NA
WP_040203708.1\|80435_80864_-	Ig domain-containing protein	J9Q6D6	Salmonella_phage	7.9e-29	71.6
WP_004109857.1\|80942_81821_-	hypothetical protein	J9Q710	Salmonella_phage	4.7e-153	94.2
WP_014342135.1\|81847_82747_-	hypothetical protein	J9Q7F4	Salmonella_phage	1.0e-123	82.6
WP_019704587.1\|82769_84344_-\|portal	phage portal protein	J9Q7R1	Salmonella_phage	1.3e-275	88.7
WP_004109863.1\|84376_85633_-\|terminase	terminase	J9Q7Y2	Salmonella_phage	9.4e-248	97.4
WP_004109866.1\|85635_86277_-	DNA-binding protein	J9Q6D4	Salmonella_phage	5.0e-96	88.2
WP_004109869.1\|86452_86719_-	hypothetical protein	J9Q757	Salmonella_phage	1.3e-37	90.9
WP_004109872.1\|86728_87619_-	hypothetical protein	J9Q7I6	Salmonella_phage	5.4e-165	97.0
WP_004109875.1\|87615_88167_-	hypothetical protein	NA	NA	NA	NA
WP_004109877.1\|88156_88798_-	ATP-binding cassette domain-containing protein	J9Q807	Salmonella_phage	2.6e-108	96.2
WP_023279438.1\|88794_89463_-	ParB N-terminal domain-containing protein	J9Q6L1	Salmonella_phage	6.6e-107	91.9
WP_162551857.1\|89462_90167_-	ParB N-terminal domain-containing protein	J9Q756	Salmonella_phage	8.2e-108	89.3
WP_108714634.1\|90226_91786_+	DEAD/DEAH box helicase	J9Q7I4	Salmonella_phage	5.2e-280	92.9
WP_004109887.1\|91788_92064_+	hypothetical protein	J9Q7T9	Salmonella_phage	3.1e-26	68.1
WP_014342146.1\|92114_92549_-	hypothetical protein	A0A1V0E7W1	Vibrio_phage	9.5e-14	36.4
WP_004109890.1\|92707_93238_+	transcriptional regulator	J9Q6L0	Salmonella_phage	9.3e-72	85.1
WP_123609186.1\|93247_93547_+	hypothetical protein	NA	NA	NA	NA
WP_004109892.1\|93871_94522_+	hypothetical protein	J9Q754	Salmonella_phage	8.4e-107	91.7
WP_004109904.1\|94572_94776_+	hypothetical protein	J9Q7I3	Salmonella_phage	4.1e-28	95.5
WP_042935000.1\|95368_95851_-	hypothetical protein	J9Q805	Salmonella_phage	2.5e-71	78.1
WP_032439735.1\|96076_96265_+	hypothetical protein	E5FFJ6	Burkholderia_phage	1.1e-11	61.1
WP_072196389.1\|96292_96490_-	hypothetical protein	J9Q753	Salmonella_phage	6.4e-26	80.0
WP_072196390.1\|96700_97120_-	hypothetical protein	NA	NA	NA	NA
WP_072201200.1\|97227_97527_-	hypothetical protein	J9Q7T7	Salmonella_phage	2.5e-29	68.7
WP_047065796.1\|97675_97888_-	hypothetical protein	J9Q804	Salmonella_phage	1.3e-24	76.5
WP_019704577.1\|97900_98119_-	hypothetical protein	J9Q6K7	Salmonella_phage	2.9e-27	81.9

DBSCAN-SWA_2

101232 : 109168

Salmonella_phage(75.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032439726.1\|101232_101550_-	hypothetical protein	J9Q750	Salmonella_phage	2.1e-42	73.3
WP_032439724.1\|101910_102990_+	hypothetical protein	NA	NA	NA	NA
WP_032439722.1\|103278_103542_-	hypothetical protein	J9Q7T5	Salmonella_phage	4.8e-29	70.5
WP_094313856.1\|103693_104395_-	hypothetical protein	J9Q6K2	Salmonella_phage	4.7e-79	70.2
WP_040223258.1\|104483_106169_-	DUF4942 domain-containing protein	J9Q747	Salmonella_phage	0.0e+00	91.1
WP_040203292.1\|106297_106876_-	hypothetical protein	J9Q7H6	Salmonella_phage	3.0e-55	57.0
WP_014342167.1\|107003_107159_-	DUF3927 family protein	H6WZJ7	Escherichia_phage	1.7e-05	61.2
WP_019704567.1\|107158_107584_-	tellurite/colicin resistance protein	Q71TK7	Escherichia_phage	9.8e-56	80.9
WP_040203296.1\|108580_109168_-	ribonuclease HI	J9Q745	Salmonella_phage	9.9e-91	80.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP040023

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP040023_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040023_1

4560583-4560677

Orphan

Consensus_repeat	Method
ACTATGGTTTTTATGGTTTTTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040023_1

>merge|NZ_CP040023|1|4560583-4560677|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATGGTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATGACTGTGGTTTTTATGGTTTTTATT

>NZ_CP040023|1|1|4560583-4560677|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATG	GTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATG
ACTGTGGTTTTTATGGTTTTTATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040023.1\|WP_004151368.1\|4554757_4557664_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_CP040023.1\|WP_002888324.1\|4568916_4569738_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP040023.1\|WP_002888337.1\|4562433_4563132_+\|response-regulator	unknown	unknown	gnl\|CDD\|226931
NZ_CP040023.1\|WP_004147026.1\|4564235_4566584_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NZ_CP040023.1\|WP_002888321.1\|4570122_4570971_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	unknown	unknown	gnl\|CDD\|273208
NZ_CP040023.1\|WP_002888348.1\|4557676_4558336_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NZ_CP040023.1\|WP_002888368.1\|4547981_4549691_+\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
NZ_CP040023.1\|WP_002888353.1\|4551341_4552037_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
NZ_CP040023.1\|WP_002888345.1\|4559129_4560494_-\|2-hydroxycarboxylate-transporter-family-protein	unknown	unknown	gnl\|CDD\|377030
NZ_CP040023.1\|WP_002888323.1\|4569740_4570118_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP040023.1\|WP_004219851.1\|4547629_4547800_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040023.1\|WP_002888329.1\|4566638_4567925_+\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP040023.1\|WP_002888357.1\|4549701_4551204_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NZ_CP040023.1\|WP_002888327.1\|4567930_4568920_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP040023.1\|WP_002888332.1\|4563164_4563992_-\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP040023.1\|WP_002888370.1\|4546798_4547644_-\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
NZ_CP040023.1\|WP_002888340.1\|4560818_4562444_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225827
NZ_CP040023.1\|WP_002888349.1\|4552212_4554570_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NZ_CP040023.1\|WP_002888320.1\|4571226_4571706_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
NZ_CP040023.1\|WP_002888347.1\|4558410_4558950_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|163145

Protein	Function_ID	Function_description	E-value
NZ_CP040023.1\|WP_004151368.1\|4554757_4557664_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_CP040023.1\|WP_002888324.1\|4568916_4569738_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
NZ_CP040023.1\|WP_002888327.1\|4567930_4568920_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_CP040023.1\|WP_004147026.1\|4564235_4566584_+\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NZ_CP040023.1\|WP_002888321.1\|4570122_4570971_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
NZ_CP040023.1\|WP_002888348.1\|4557676_4558336_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	2.4454e-161
NZ_CP040023.1\|WP_002888368.1\|4547981_4549691_+\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
NZ_CP040023.1\|WP_002888353.1\|4551341_4552037_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0
NZ_CP040023.1\|WP_002888337.1\|4562433_4563132_+\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	5.03078e-66
NZ_CP040023.1\|WP_002888323.1\|4569740_4570118_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
NZ_CP040023.1\|WP_002888345.1\|4559129_4560494_-\|2-hydroxycarboxylate-transporter-family-protein	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169
NZ_CP040023.1\|WP_002888329.1\|4566638_4567925_+\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
NZ_CP040023.1\|WP_002888357.1\|4549701_4551204_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
NZ_CP040023.1\|WP_002888332.1\|4563164_4563992_-\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164
NZ_CP040023.1\|WP_002888370.1\|4546798_4547644_-\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
NZ_CP040023.1\|WP_002888340.1\|4560818_4562444_+\|sensor-histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	6.55037e-173
NZ_CP040023.1\|WP_002888349.1\|4552212_4554570_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NZ_CP040023.1\|WP_002888320.1\|4571226_4571706_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.71656e-127
NZ_CP040023.1\|WP_002888347.1\|4558410_4558950_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	5.54697e-86

>NZ_CP040023.1|WP_002888345.1|4559129_4560494_-|2-hydroxycarboxylate-transporter-family-protein
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>NZ_CP040023.1|WP_002888347.1|4558410_4558950_-|citrate-lyase-holo-[acyl-carrier-protein]-synthase
MSVDTPAQAGVSIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>NZ_CP040023.1|WP_002888348.1|4557676_4558336_+|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVARVWGHPQPAEGLVDLPLICDWPNRPKQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>NZ_CP040023.1|WP_004151368.1|4554757_4557664_+|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESIDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAGIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>NZ_CP040023.1|WP_002888349.1|4552212_4554570_+|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLRDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFIASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIDRRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLIEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSHVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPVDYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>NZ_CP040023.1|WP_002888353.1|4551341_4552037_+|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQGIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>NZ_CP040023.1|WP_002888357.1|4549701_4551204_+|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATVEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>NZ_CP040023.1|WP_002888368.1|4547981_4549691_+|ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLSQSVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKESVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGVYDDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSKAALTH
>NZ_CP040023.1|WP_004219851.1|4547629_4547800_+|hypothetical-protein
MRFGHTRGSPRRYQWHQLSIFIILSLSALSRLRRRWEFGEKPAQQAKKAPAACIPP
>NZ_CP040023.1|WP_002888370.1|4546798_4547644_-|arabinose-operon-transcriptional-regulator-AraC
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVREACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE
>NZ_CP040023.1|WP_002888340.1|4560818_4562444_+|sensor-histidine-kinase
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLGLSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEAHDAS
>NZ_CP040023.1|WP_002888337.1|4562433_4563132_+|response-regulator
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSDREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>NZ_CP040023.1|WP_002888332.1|4563164_4563992_-|co-chaperone-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>NZ_CP040023.1|WP_004147026.1|4564235_4566584_+|LPS-assembly-protein-LptD
MKKRIPSLLATMIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>NZ_CP040023.1|WP_002888329.1|4566638_4567925_+|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>NZ_CP040023.1|WP_002888327.1|4567930_4568920_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVPLNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDHDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>NZ_CP040023.1|WP_002888324.1|4568916_4569738_+|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>NZ_CP040023.1|WP_002888323.1|4569740_4570118_+|Co2+/Mg2+-efflux-protein-ApaG
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>NZ_CP040023.1|WP_002888321.1|4570122_4570971_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKPLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>NZ_CP040023.1|WP_002888320.1|4571226_4571706_-|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIGRPLPGRKNIVISSKPGSDDRVQWVSSVEEAIAACGDVEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

445131 : 478389

uncultured_Caudovirales_phage(75.0%)

capsid,tRNA,integrase,head,terminase,portal,protease,tail

attL 462739:462756|attR 478734:478751

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002919147.1\|445131_446079_-\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	2.2e-07	37.2
WP_002919144.1\|446093_446603_-	peptide deformylase	E3SLL2	Synechococcus_phage	2.6e-18	40.3
WP_002919139.1\|446731_447856_+	DNA-protecting protein DprA	NA	NA	NA	NA
WP_002919137.1\|447827_448301_+	DUF494 domain-containing protein	NA	NA	NA	NA
WP_004145330.1\|448326_448869_+	hypothetical protein	NA	NA	NA	NA
WP_002919132.1\|448873_449446_+	L-threonylcarbamoyladenylate synthase type 1 TsaC	NA	NA	NA	NA
WP_002919126.1\|449449_450268_+	shikimate dehydrogenase	NA	NA	NA	NA
WP_002919125.1\|450264_450522_+	DUF1488 domain-containing protein	NA	NA	NA	NA
WP_002919123.1\|450497_451052_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA
WP_002919103.1\|456847_457069_-	membrane protein	NA	NA	NA	NA
WP_002919102.1\|457362_460473_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA
WP_002919101.1\|460485_461625_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_004150972.1\|462003_462654_+	acrEF/envCD operon transcriptional regulator	NA	NA	NA	NA
462739:462756	attL	NA	NA	NA	NA
WP_004150971.1\|462929_464156_+\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	1.8e-150	62.2
WP_004150970.1\|464248_465190_+	hypothetical protein	NA	NA	NA	NA
WP_001547839.1\|465371_465656_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_004150969.1\|465666_466446_+	hypothetical protein	Q8HA02	Enterobacteria_phage	6.2e-40	51.5
WP_157263200.1\|466948_467167_+	host cell division inhibitor Icd-like protein	A0A2H4JGW3	uncultured_Caudovirales_phage	1.4e-34	94.4
WP_001549752.1\|467159_467348_+	hypothetical protein	NA	NA	NA	NA
WP_004218267.1\|467424_467553_-	hypothetical protein	NA	NA	NA	NA
WP_004150966.1\|467651_468020_+	hypothetical protein	A0A2H4JCX7	uncultured_Caudovirales_phage	3.7e-51	81.1
WP_001549749.1\|468016_468382_+	hypothetical protein	NA	NA	NA	NA
WP_004150965.1\|468381_470517_+	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	3.4e-205	62.4
WP_004150964.1\|470859_471195_+	hypothetical protein	NA	NA	NA	NA
WP_004150963.1\|471243_471756_-	hypothetical protein	NA	NA	NA	NA
WP_001549743.1\|472019_473186_+\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	9.8e-207	95.9
WP_001547826.1\|473237_473798_+\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	1.2e-98	95.7
WP_004150962.1\|473799_475041_+\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	1.0e-230	96.5
WP_004150961.1\|475037_475373_+\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	3.7e-26	57.8
WP_001547824.1\|475369_475669_+\|head,tail	phage gp6-like head-tail connector protein	A0A2H4JD08	uncultured_Caudovirales_phage	3.4e-39	80.8
WP_004150959.1\|475668_476112_+	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	2.8e-77	91.8
WP_004150957.1\|476104_476257_+	hypothetical protein	A0A2H4JCY9	uncultured_Caudovirales_phage	2.4e-17	88.0
WP_000113647.1\|476387_476744_+\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	5.5e-60	99.2
WP_004150955.1\|476727_478389_+\|terminase	terminase large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	0.0e+00	98.0
478734:478751	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1233668 : 1279903

Salmonella_phage(83.72%)

coat,capsid,head,integrase,tRNA,terminase,lysis,portal,tail,plate

attL 1231962:1232008|attR 1268529:1268575

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1231962:1232008	attL	NA	NA	NA	NA
WP_004151020.1\|1233668_1234694_-\|integrase	site-specific integrase	A0A1S6L016	Salmonella_phage	1.5e-190	93.8
WP_004151019.1\|1234696_1235326_-	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	1.4e-61	54.5
WP_001397669.1\|1235448_1235691_+	hypothetical protein	A0A1S6KZZ6	Salmonella_phage	4.0e-38	98.8
WP_004151018.1\|1235723_1236233_+	phage regulatory CII family protein	A0A1S6L008	Salmonella_phage	1.1e-77	85.8
WP_004151017.1\|1236240_1236441_+	DUF2724 domain-containing protein	A0A1S6L005	Salmonella_phage	4.5e-19	68.8
WP_004144796.1\|1236404_1236743_+	DUF5347 domain-containing protein	A0A218M4I7	Erwinia_phage	6.2e-29	58.0
WP_004151016.1\|1236810_1237044_+	DUF2732 family protein	A0A1S6L021	Salmonella_phage	6.0e-31	90.9
WP_004151014.1\|1237043_1237271_+	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	5.1e-35	92.0
WP_004151013.1\|1237267_1238119_+	DNA adenine methylase	A0A1S6L011	Salmonella_phage	2.2e-115	75.4
WP_004151012.1\|1238115_1240500_+	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	87.9
WP_004151011.1\|1240662_1240851_+	hypothetical protein	A0A1S6L006	Salmonella_phage	2.2e-23	90.3
WP_004151010.1\|1240862_1241096_+	DinI family protein	A0A0M4S6H1	Salmonella_phage	2.0e-34	96.1
WP_004151009.1\|1241191_1241875_-	hypothetical protein	NA	NA	NA	NA
WP_004151008.1\|1241861_1242941_-	hypothetical protein	NA	NA	NA	NA
WP_004151007.1\|1242940_1243942_-	hypothetical protein	NA	NA	NA	NA
WP_024940854.1\|1244463_1244733_+	hypothetical protein	D2IZW1	Enterococcus_phage	1.4e-15	41.3
WP_004151006.1\|1244789_1245833_-\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	3.1e-172	85.6
WP_019405037.1\|1245832_1247596_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	91.8
WP_004151004.1\|1247736_1248570_+\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	4.4e-100	77.6
WP_004151003.1\|1248586_1249639_+\|capsid	phage major capsid protein, P2 family	A0A1S6KZZ3	Salmonella_phage	6.8e-175	91.0
WP_004134644.1\|1249642_1250296_+\|terminase	terminase endonuclease subunit	A0A1S6KZX1	Salmonella_phage	1.9e-90	80.0
WP_004151002.1\|1250391_1250856_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	1.5e-73	85.7
WP_004151001.1\|1250855_1251059_+\|tail	tail protein X	E5G6M9	Salmonella_phage	9.8e-30	89.6
WP_004134639.1\|1251062_1251278_+	hypothetical protein	E5G6N0	Salmonella_phage	6.1e-30	88.7
WP_004151000.1\|1251258_1251768_+	lysozyme	E5G6N1	Salmonella_phage	1.6e-81	85.2
WP_004150999.1\|1251772_1252156_+	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	1.9e-18	45.4
WP_004150998.1\|1252152_1252581_+\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	7.1e-54	82.5
WP_072093160.1\|1252555_1252714_+	hypothetical protein	A0A1S6KZX6	Salmonella_phage	9.0e-15	75.0
WP_004150997.1\|1252676_1253099_+\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	8.2e-63	83.2
WP_004150996.1\|1253091_1253538_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	2.5e-54	72.3
WP_004150995.1\|1253560_1254427_-	hypothetical protein	NA	NA	NA	NA
WP_004150994.1\|1254521_1255094_+\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	1.4e-76	70.8
WP_004150993.1\|1255090_1255453_+\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	8.4e-48	85.6
WP_004150992.1\|1255439_1256348_+\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	1.9e-109	68.9
WP_004152935.1\|1256340_1257012_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	3.2e-61	58.9
WP_004150990.1\|1257013_1258963_+\|coat	spore coat protein CotH	Q6QI97	Burkholderia_phage	1.0e-06	38.9
WP_004200602.1\|1258972_1260091_+	hypothetical protein	A0A248XD67	Klebsiella_phage	4.4e-55	38.0
WP_004150988.1\|1260142_1261216_+\|tail	phage tail protein	A0A1S6KZZ8	Salmonella_phage	6.6e-40	53.6
WP_004150987.1\|1261364_1262537_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	3.4e-207	91.5
WP_004150986.1\|1262546_1263062_+\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	1.4e-80	84.2
WP_004150985.1\|1263114_1263414_+\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	8.2e-33	78.0
WP_002896220.1\|1263428_1263548_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.2e-13	87.2
WP_072093161.1\|1263774_1266171_+\|tail	phage tail tape measure protein	E5FFG5	Burkholderia_phage	8.1e-107	44.5
WP_004150983.1\|1266167_1266653_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	5.2e-61	80.1
WP_004150982.1\|1266649_1267744_+	phage late control D family protein	E5G6Q3	Salmonella_phage	2.4e-170	83.6
WP_004150981.1\|1267810_1268029_+	positive regulator of late gene transcription	Q53ZE7	Salmonella_virus	1.9e-26	72.2
WP_004150980.1\|1268056_1268434_-	hypothetical protein	NA	NA	NA	NA
WP_002914164.1\|1269037_1269520_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	2.3e-29	47.4
1268529:1268575	attR	NA	NA	NA	NA
WP_004188817.1\|1269630_1270107_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_002914161.1\|1270096_1270387_+	RnfH family protein	NA	NA	NA	NA
WP_002914160.1\|1270453_1270795_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_004145681.1\|1270776_1270917_-	hypothetical protein	NA	NA	NA	NA
WP_002914159.1\|1270942_1272604_-	DNA repair protein RecN	NA	NA	NA	NA
WP_002914158.1\|1272690_1273569_-	NAD(+) kinase	NA	NA	NA	NA
WP_002914155.1\|1273693_1274284_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_004149392.1\|1274403_1275690_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_002914153.1\|1275709_1276501_-	inner membrane protein YpjD	NA	NA	NA	NA
WP_002914152.1\|1276664_1278029_+	signal recognition particle protein	NA	NA	NA	NA
WP_002914149.1\|1278288_1278537_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_004150977.1\|1278555_1279104_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_002914147.1\|1279135_1279903_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA

DBSCAN-SWA_3

1384619 : 1444326

Salmonella_phage(34.04%)

capsid,integrase,transposase,terminase,tail

attL 1393819:1393834|attR 1447027:1447042

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004151980.1\|1384619_1386086_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	1.2e-87	38.7
WP_004151979.1\|1386153_1387731_+	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
WP_087831089.1\|1387922_1389173_+\|integrase	tyrosine-type recombinase/integrase	A0A1X9TCT6	Enterobacter_phage	8.0e-207	85.3
WP_004243823.1\|1389189_1389381_-	hypothetical protein	NA	NA	NA	NA
WP_059065281.1\|1389377_1389974_-	adenine methylase	T1SA14	Salmonella_phage	5.3e-108	92.3
WP_023285452.1\|1389970_1390477_-	hypothetical protein	NA	NA	NA	NA
WP_004152545.1\|1390473_1390632_-	DUF1317 family protein	T1SAR0	Salmonella_phage	1.9e-17	78.8
WP_009485475.1\|1390624_1390918_-	PerC family transcriptional regulator	T1S9J5	Salmonella_phage	4.0e-32	71.1
WP_004144294.1\|1391027_1391276_-	AlpA family phage regulatory protein	A0A0F6TJ45	Escherichia_coli_O157_typing_phage	2.8e-31	78.0
WP_165539438.1\|1391324_1392206_-	recombinase RecT	T1SBJ5	Salmonella_phage	1.9e-133	83.3
WP_165539440.1\|1392202_1393024_-	exodeoxyribonuclease VIII	A0A193GYK2	Enterobacter_phage	1.8e-130	80.2
WP_165539442.1\|1393020_1393227_-	MarR family transcriptional regulator	A0A173GC36	Salmonella_phage	6.2e-16	76.0
WP_004164029.1\|1393223_1393523_-	hypothetical protein	A0A0F6R7M4	Escherichia_coli_O157_typing_phage	2.1e-20	54.5
WP_004164037.1\|1393519_1393669_-	hypothetical protein	G9L6A5	Escherichia_phage	7.9e-13	84.2
1393819:1393834	attL	NA	NA	NA	NA
WP_004144290.1\|1393889_1394471_-	helix-turn-helix transcriptional regulator	Q858D7	Salmonella_phage	7.1e-65	64.3
WP_023285447.1\|1394625_1394859_+	hypothetical protein	T1SAR5	Salmonella_phage	1.2e-23	66.2
WP_004152537.1\|1395005_1395215_+	hypothetical protein	A0A193GYW4	Enterobacter_phage	1.8e-26	78.3
WP_023285446.1\|1395214_1395982_+	hypothetical protein	A0A193GZ86	Enterobacter_phage	8.9e-140	91.4
WP_032418532.1\|1395978_1396764_+	replication protein	A0A193GYX1	Enterobacter_phage	3.7e-133	87.7
WP_071182195.1\|1396883_1397228_+	DUF1064 domain-containing protein	A0A0F6R8N5	Escherichia_coli_O157_typing_phage	6.3e-53	85.1
WP_071182197.1\|1397420_1397831_+	hypothetical protein	A0A2P1MXC5	Escherichia_phage	7.3e-16	55.6
WP_032441402.1\|1397814_1398006_+	hypothetical protein	NA	NA	NA	NA
WP_165562114.1\|1398002_1398398_+	hypothetical protein	G8C7U4	Escherichia_phage	2.6e-58	79.0
WP_165562113.1\|1398390_1398780_+	hypothetical protein	NA	NA	NA	NA
WP_040227357.1\|1398779_1399205_+	HNH endonuclease	C6ZR29	Salmonella_phage	5.5e-59	81.5
WP_071182194.1\|1399201_1400140_+	DUF551 domain-containing protein	R9TQX3	Aeromonas_phage	6.1e-42	61.8
WP_071182193.1\|1400224_1400530_+	hypothetical protein	Q7Y3Y0	Yersinia_phage	1.7e-14	43.4
WP_110224090.1\|1400522_1400861_+	hypothetical protein	A0A193GYX4	Enterobacter_phage	1.4e-44	80.9
WP_004178082.1\|1401281_1402769_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_020277900.1\|1402885_1403251_-	type II toxin-antitoxin system toxin endoribonuclease PemK	NA	NA	NA	NA
WP_004187429.1\|1403219_1403477_-	type II toxin-antitoxin system antitoxin PemI	NA	NA	NA	NA
WP_011790968.1\|1403808_1405059_-\|transposase	IS4-like element IS10A family transposase	Q9E8P4	Bluetongue_virus	4.2e-171	71.4
WP_015586033.1\|1405319_1406231_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_015059991.1\|1406532_1407330_-	carbapenem-hydrolyzing class D beta-lactamase OXA-48	NA	NA	NA	NA
WP_004187367.1\|1408626_1408893_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004187369.1\|1408937_1409387_-	DNA repair protein RadC	NA	NA	NA	NA
WP_004187371.1\|1409508_1409871_-	DUF3085 domain-containing protein	NA	NA	NA	NA
WP_004187372.1\|1409892_1410156_-	hypothetical protein	NA	NA	NA	NA
WP_004206907.1\|1410273_1410684_-	hypothetical protein	NA	NA	NA	NA
WP_060578229.1\|1410712_1411192_-	hypothetical protein	NA	NA	NA	NA
WP_019725064.1\|1411184_1411430_-	hypothetical protein	NA	NA	NA	NA
WP_046853563.1\|1411808_1412327_-	phospholipase D family protein	NA	NA	NA	NA
WP_004187380.1\|1412381_1412825_-	hypothetical protein	NA	NA	NA	NA
WP_004187382.1\|1412827_1413802_-	recombinase	A0A0A7NPX4	Enterobacteria_phage	7.9e-85	52.0
WP_004187383.1\|1414042_1414783_-\|integrase	tyrosine-type recombinase/integrase	I3WFA4	Macacine_betaherpesvirus	9.5e-22	51.6
WP_004187387.1\|1414801_1415050_-	hypothetical protein	NA	NA	NA	NA
WP_004187390.1\|1415046_1415532_-	hypothetical protein	NA	NA	NA	NA
WP_004187392.1\|1415528_1416116_-	restriction endonuclease	NA	NA	NA	NA
WP_004187394.1\|1416108_1416357_-	helix-turn-helix transcriptional regulator	A0A248SLB9	Klebsiella_phage	1.6e-10	53.0
WP_004187397.1\|1416353_1416815_-	hypothetical protein	NA	NA	NA	NA
WP_004187400.1\|1416955_1417501_+	hypothetical protein	NA	NA	NA	NA
WP_015059997.1\|1417806_1418391_-	hypothetical protein	NA	NA	NA	NA
WP_004187405.1\|1418390_1418549_-	hypothetical protein	NA	NA	NA	NA
WP_004187406.1\|1418573_1418918_-	hypothetical protein	NA	NA	NA	NA
WP_103113638.1\|1419444_1420632_+	RelB antitoxin	NA	NA	NA	NA
WP_015059995.1\|1420650_1420923_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_015059994.1\|1420919_1421603_+	hypothetical protein	NA	NA	NA	NA
WP_004187411.1\|1421647_1421866_+	hypothetical protein	NA	NA	NA	NA
WP_004187413.1\|1421868_1422078_+	hypothetical protein	E5FFJ6	Burkholderia_phage	7.0e-07	42.0
WP_019725070.1\|1422200_1423466_-	translesion error-prone DNA polymerase V subunit UmuC	A0A1W6JNT0	Morganella_phage	2.6e-112	50.4
WP_004187425.1\|1423453_1423888_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.2e-29	55.3
WP_004178082.1\|1424286_1425774_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_165562112.1\|1425852_1426182_+	hypothetical protein	K7PGV5	Enterobacterial_phage	6.7e-28	56.1
WP_032457429.1\|1426239_1426824_+\|terminase	terminase small subunit	T1SBI8	Salmonella_phage	5.8e-91	89.1
WP_165562111.1\|1426820_1428296_+\|terminase	terminase	G9L6B8	Escherichia_phage	2.5e-271	90.6
WP_165562110.1\|1428454_1428787_-	hypothetical protein	NA	NA	NA	NA
WP_004152472.1\|1429492_1429696_+	hypothetical protein	NA	NA	NA	NA
WP_087826981.1\|1429699_1431379_+\|tail	phage tail protein	T1S9Z7	Salmonella_phage	1.4e-193	59.1
WP_004152470.1\|1431375_1431681_+	hypothetical protein	Q2A090	Sodalis_phage	1.1e-16	51.3
WP_040120462.1\|1431989_1432388_+	peptidase	T1SAP9	Salmonella_phage	1.6e-36	59.5
WP_110220407.1\|1432400_1433408_+\|capsid	phage capsid protein	T1S9H9	Salmonella_phage	4.7e-181	92.5
WP_004152466.1\|1433417_1433810_+	hypothetical protein	T1SA71	Salmonella_phage	1.5e-55	89.9
WP_025367999.1\|1433802_1434081_+	hypothetical protein	T1SA01	Salmonella_phage	1.1e-20	58.9
WP_024622836.1\|1434129_1434741_+	hypothetical protein	T1SAQ2	Salmonella_phage	5.4e-47	48.5
WP_165562109.1\|1434740_1437218_+	hypothetical protein	G9L6D0	Escherichia_phage	8.6e-277	58.3
WP_165562108.1\|1437219_1437690_+	hypothetical protein	Q858G2	Salmonella_phage	1.1e-44	54.6
WP_048293158.1\|1437682_1438180_+	hypothetical protein	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	4.0e-24	43.6
WP_004152460.1\|1438192_1440937_+	hypothetical protein	A0A193GYI3	Enterobacter_phage	9.1e-94	39.2
WP_165562107.1\|1440936_1444326_+	hypothetical protein	G9L6D4	Escherichia_phage	3.7e-121	42.0
1447027:1447042	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1783967 : 1790872

Planktothrix_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004180551.1\|1783967_1784831_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-10	27.5
WP_039819854.1\|1784841_1785615_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.6e-26	36.3
WP_004151134.1\|1785855_1786752_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
WP_039819857.1\|1786994_1788356_-\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	1.1e-206	94.5
WP_004175198.1\|1788674_1789397_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
WP_004149058.1\|1789393_1790872_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	8.5e-30	28.3

DBSCAN-SWA_5

1835849 : 1847533

Enterobacteria_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004180506.1\|1835849_1837265_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	1.4e-53	31.0
WP_039819506.1\|1837286_1838657_+	phosphomannomutase CpsG	A0A127AWJ1	Bacillus_phage	6.4e-32	25.9
WP_039819536.1\|1838811_1839876_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	9.8e-105	54.7
WP_039819507.1\|1839889_1840759_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.3e-110	66.7
WP_004175259.1\|1840790_1841681_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	2.8e-28	34.2
WP_039819508.1\|1841695_1842250_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	2.9e-52	58.2
WP_039819510.1\|1842429_1843596_+	UDP-glucose 6-dehydrogenase	M1I798	Paramecium_bursaria_Chlorella_virus	7.0e-112	54.7
WP_077255456.1\|1845210_1845315_-\|transposase	transposase	NA	NA	NA	NA
WP_004144151.1\|1846006_1846129_-	small membrane protein	NA	NA	NA	NA
WP_045327201.1\|1846265_1846460_-	hypothetical protein	NA	NA	NA	NA
WP_039819511.1\|1846528_1847533_-	NAD-dependent epimerase	E3T4Y8	Cafeteria_roenbergensis_virus	1.8e-31	29.5

DBSCAN-SWA_6

2898692 : 2909579

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004151613.1\|2898692_2901800_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.6
WP_004151612.1\|2901854_2903120_+	MFS transporter	NA	NA	NA	NA
WP_001620097.1\|2903150_2904239_-	AAA family ATPase	A0A077SLJ9	Escherichia_phage	8.0e-211	100.0
WP_002904006.1\|2904325_2904586_-	hypothetical protein	A0A077SK33	Escherichia_phage	3.5e-40	97.7
WP_004176269.1\|2904883_2905744_+	class A broad-spectrum beta-lactamase SHV-11	A0A077SL40	Escherichia_phage	2.2e-155	99.3
WP_002210513.1\|2905764_2906526_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_004151610.1\|2906786_2907689_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	7.7e-159	99.3
WP_004151609.1\|2907700_2908966_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	6.6e-233	99.5
WP_002210516.1\|2908958_2909579_+	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0

DBSCAN-SWA_7

3134509 : 3176251

Klebsiella_phage(34.04%)

terminase,integrase

attL 3167364:3167378|attR 3173373:3173387

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014343022.1\|3134509_3137533_-	hypothetical protein	A0A286S1P0	Klebsiella_phage	1.6e-22	44.7
WP_004152577.1\|3137588_3137786_-	hypothetical protein	NA	NA	NA	NA
WP_004231602.1\|3137760_3137892_-	hypothetical protein	NA	NA	NA	NA
WP_004231600.1\|3138012_3138177_-	hypothetical protein	NA	NA	NA	NA
WP_108714555.1\|3138651_3139425_-	DUF2612 domain-containing protein	A0A2H4J1A9	uncultured_Caudovirales_phage	8.2e-77	54.4
WP_004152574.1\|3139421_3140618_-	hypothetical protein	A0A0M4RD32	Salmonella_phage	3.9e-158	72.9
WP_004152573.1\|3140617_3140971_-	hypothetical protein	A0A2H4J629	uncultured_Caudovirales_phage	2.3e-50	80.3
WP_004152572.1\|3140972_3141626_-	hypothetical protein	A0A2H4J8H6	uncultured_Caudovirales_phage	1.0e-59	63.5
WP_004225248.1\|3141679_3142030_-	hypothetical protein	NA	NA	NA	NA
WP_004173705.1\|3142282_3142468_+	hypothetical protein	NA	NA	NA	NA
WP_004152570.1\|3142520_3142862_-	hypothetical protein	A0A2H4J1A5	uncultured_Caudovirales_phage	1.8e-23	46.6
WP_004152569.1\|3142861_3143884_-	hypothetical protein	A0A2H4J1B2	uncultured_Caudovirales_phage	9.2e-100	54.2
WP_004217362.1\|3143886_3144114_-	hypothetical protein	A0A2H4J495	uncultured_Caudovirales_phage	4.6e-20	56.0
WP_004225238.1\|3144189_3144603_-	hypothetical protein	A0A2H4J1B3	uncultured_Caudovirales_phage	8.1e-31	55.9
WP_004152566.1\|3144788_3146792_-	lytic transglycosylase domain-containing protein	A0A2H4J9N7	uncultured_Caudovirales_phage	1.2e-247	63.6
WP_004152565.1\|3146781_3146934_-	hypothetical protein	A0A2H4J1A2	uncultured_Caudovirales_phage	7.6e-19	88.0
WP_004152564.1\|3146969_3147395_-	hypothetical protein	A0A2H4J2V6	uncultured_Caudovirales_phage	2.6e-40	63.4
WP_004199809.1\|3147398_3147839_-	DUF3277 family protein	A0A0M5M1K6	Salmonella_phage	3.3e-62	80.1
WP_004152177.1\|3147849_3148995_-	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	6.3e-166	76.9
WP_004152176.1\|3148998_3149439_-	hypothetical protein	A0A2H4J1A0	uncultured_Caudovirales_phage	1.6e-40	51.7
WP_001116156.1\|3149533_3149920_-	hypothetical protein	A0A2H4J1A4	uncultured_Caudovirales_phage	1.1e-48	78.2
WP_000834982.1\|3149919_3150426_-	hypothetical protein	NA	NA	NA	NA
WP_000113538.1\|3150422_3150842_-	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	3.3e-40	60.7
WP_000725700.1\|3150810_3151092_-	hypothetical protein	NA	NA	NA	NA
WP_001132269.1\|3151131_3152073_-	DUF2184 domain-containing protein	A0A2H4J191	uncultured_Caudovirales_phage	1.7e-137	77.1
WP_000528476.1\|3152084_3152579_-	hypothetical protein	A0A2H4JHM9	uncultured_Caudovirales_phage	4.2e-50	62.7
WP_004199270.1\|3152582_3153785_-	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	2.6e-106	54.1
WP_004152174.1\|3153836_3154385_-	hypothetical protein	A0A0M4REK0	Salmonella_phage	3.0e-49	56.3
WP_004152173.1\|3154440_3155892_-	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	3.8e-192	68.8
WP_004152172.1\|3156129_3157530_-\|terminase	PBSX family phage terminase large subunit	A0A077KAW0	Edwardsiella_phage	9.4e-188	69.0
WP_004218030.1\|3157480_3157969_-	hypothetical protein	NA	NA	NA	NA
WP_004152170.1\|3158334_3158655_-	hypothetical protein	NA	NA	NA	NA
WP_004153952.1\|3158889_3159279_-	lipase chaperone	A0A192Y6H8	Salmonella_phage	9.4e-21	49.2
WP_004152169.1\|3159275_3159806_-	lysozyme	K7PLY1	Enterobacteria_phage	2.7e-79	77.1
WP_004146526.1\|3159808_3160057_-	hypothetical protein	NA	NA	NA	NA
WP_004218026.1\|3160074_3160203_+	hypothetical protein	NA	NA	NA	NA
WP_004152168.1\|3160240_3160396_-	hypothetical protein	NA	NA	NA	NA
WP_004152167.1\|3160462_3161245_-	antitermination protein	F1C595	Cronobacter_phage	7.2e-113	76.8
WP_004198239.1\|3161241_3161718_-	hypothetical protein	A0A286N2Q1	Klebsiella_phage	1.8e-90	100.0
WP_004198233.1\|3161714_3162677_-	zinc-binding domain of primase-helicase family protein	A0A286N2Q0	Klebsiella_phage	4.8e-183	99.4
WP_004198228.1\|3162678_3164337_-	DEAD/DEAH box helicase	A0A286N2P9	Klebsiella_phage	0.0e+00	96.0
WP_004152162.1\|3164913_3165135_-	helix-turn-helix transcriptional regulator	A0A286S2C1	Klebsiella_phage	3.0e-32	100.0
WP_004152161.1\|3165232_3165901_+	LexA family transcriptional regulator	A0A286S2B2	Klebsiella_phage	2.4e-125	99.5
WP_004152160.1\|3166071_3166386_+	hypothetical protein	A0A286S1T9	Klebsiella_phage	1.0e-49	100.0
WP_004152159.1\|3166378_3166567_+	hypothetical protein	A0A286S1P8	Klebsiella_phage	4.6e-26	100.0
WP_004218017.1\|3166940_3167102_+	hypothetical protein	A0A286S1Q6	Klebsiella_phage	1.5e-20	96.2
WP_004152157.1\|3167094_3167349_+	hypothetical protein	A0A286SGR4	Klebsiella_phage	3.1e-41	97.6
3167364:3167378	attL	NA	NA	NA	NA
WP_004146412.1\|3167416_3167539_+	hypothetical protein	A0A286S1P6	Klebsiella_phage	1.3e-16	100.0
WP_004152156.1\|3167535_3167961_+	hypothetical protein	A0A286S1S2	Klebsiella_phage	3.5e-53	77.9
WP_004152155.1\|3167957_3168152_+	hypothetical protein	NA	NA	NA	NA
WP_004152154.1\|3168148_3168976_+	hypothetical protein	Q8W654	Enterobacteria_phage	5.5e-111	84.0
WP_004152153.1\|3169080_3169599_+	hypothetical protein	A0A286S1S7	Klebsiella_phage	1.7e-94	98.8
WP_004154298.1\|3169604_3170315_+	DNA-binding protein	A0A286S260	Klebsiella_phage	2.1e-111	88.3
WP_004152151.1\|3170304_3170529_+	hypothetical protein	A0A286S2B3	Klebsiella_phage	3.1e-29	89.2
WP_004218013.1\|3170624_3170738_+	hypothetical protein	A0A286S2B6	Klebsiella_phage	4.6e-13	100.0
WP_014343018.1\|3170980_3171214_+	hypothetical protein	NA	NA	NA	NA
WP_004198245.1\|3171286_3171433_+	hypothetical protein	A0A1B5FPC2	Escherichia_phage	2.9e-15	70.8
WP_004152148.1\|3171392_3171635_+	hypothetical protein	A0A0M4RTZ2	Salmonella_phage	2.2e-20	73.8
WP_004152147.1\|3171615_3172797_-\|integrase	site-specific integrase	A0A0M4QX09	Salmonella_phage	5.6e-202	84.2
WP_016197745.1\|3172993_3173542_+	DJ-1/PfpI family protein	NA	NA	NA	NA
3173373:3173387	attR	NA	NA	NA	NA
WP_004152145.1\|3173740_3175273_-	HD domain-containing protein	A0A1B1ISR1	uncultured_Mediterranean_phage	1.1e-21	30.0
WP_004152144.1\|3175489_3176251_-	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	2.4e-20	32.5

DBSCAN-SWA_8

3521996 : 3547950

Pectobacterium_phage(22.22%)

head,integrase,tail,protease

attL 3533246:3533261|attR 3548011:3548026

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004191050.1\|3521996_3522470_-	hypothetical protein	K4NYY6	Pseudomonas_phage	1.8e-26	46.3
WP_159225346.1\|3522508_3523504_-	hypothetical protein	W6MW28	Pseudomonas_phage	7.0e-105	60.6
WP_159225347.1\|3523514_3524267_-	hypothetical protein	NA	NA	NA	NA
WP_159225352.1\|3524253_3524577_-	GTP-binding protein	NA	NA	NA	NA
WP_064185222.1\|3524579_3526244_-\|head,tail	phage head-tail adapter protein	A0A221SAN2	Ralstonia_phage	3.1e-105	39.4
WP_009308353.1\|3526243_3527638_-	hypothetical protein	A0A0E3JIA1	Rhodoferax_phage	3.1e-58	36.9
WP_071035057.1\|3527722_3528175_-	DNA-packaging protein	A3EYX3	Salmonella_phage	1.5e-49	67.2
WP_004199477.1\|3528181_3528442_-	hypothetical protein	NA	NA	NA	NA
WP_004199520.1\|3528425_3528659_-	hypothetical protein	NA	NA	NA	NA
WP_159225348.1\|3528720_3529245_-	DUF2829 domain-containing protein	A0A1B0VMG3	Pseudomonas_phage	6.2e-44	54.1
WP_159225349.1\|3529285_3529726_-	hypothetical protein	R9TRJ4	Aeromonas_phage	3.6e-13	43.8
WP_004199527.1\|3529731_3530079_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_071838911.1\|3530066_3530390_-	DUF968 domain-containing protein	A0A1I9KFA7	Aeromonas_phage	1.8e-25	55.8
WP_048256710.1\|3530379_3530973_-	DUF1367 family protein	H9C173	Pectobacterium_phage	2.7e-80	71.6
WP_029499143.1\|3531041_3531233_-	hypothetical protein	NA	NA	NA	NA
WP_159225350.1\|3531414_3531753_-	hypothetical protein	A0A193GYX4	Enterobacter_phage	9.5e-46	82.0
WP_159225351.1\|3531752_3531992_-	hypothetical protein	G8C7S3	Escherichia_phage	2.9e-09	53.4
WP_159225353.1\|3531984_3532350_-	hypothetical protein	M9NZE4	Enterobacteria_phage	2.5e-31	62.2
WP_159225332.1\|3532433_3532727_-	hypothetical protein	Q6UAT9	Klebsiella_phage	7.7e-44	85.6
WP_159225333.1\|3532726_3533089_-	hypothetical protein	NA	NA	NA	NA
WP_159225334.1\|3533085_3533292_-	hypothetical protein	R9TRD3	Aeromonas_phage	1.2e-30	94.1
3533246:3533261	attL	NA	NA	NA	NA
WP_159225335.1\|3533288_3533843_-	hypothetical protein	R9TME7	Aeromonas_phage	2.1e-05	46.4
WP_009308335.1\|3533970_3534756_-	hypothetical protein	C7BGF1	Burkholderia_phage	2.4e-63	53.3
WP_009308334.1\|3534795_3535029_-	hypothetical protein	NA	NA	NA	NA
WP_009308333.1\|3535032_3535683_-	hypothetical protein	NA	NA	NA	NA
WP_159225336.1\|3535721_3537110_-	replicative DNA helicase	Q8HA30	Enterobacteria_phage	1.3e-104	46.6
WP_060617680.1\|3537106_3538099_-	hypothetical protein	A0A067ZIA1	Vibrio_phage	2.6e-30	55.5
WP_046387639.1\|3538101_3538260_-	hypothetical protein	NA	NA	NA	NA
WP_022644597.1\|3538343_3538790_-	hypothetical protein	H9C162	Pectobacterium_phage	5.7e-30	56.1
WP_024623103.1\|3538850_3539045_-	hypothetical protein	K7PHK4	Enterobacteria_phage	1.7e-07	45.9
WP_159225337.1\|3539124_3539526_+	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	2.7e-39	60.2
WP_159225339.1\|3540466_3540700_+	hypothetical protein	NA	NA	NA	NA
WP_159225338.1\|3540744_3542874_+	hypothetical protein	H9C157	Pectobacterium_phage	8.9e-97	34.6
WP_009308318.1\|3542873_3543440_+	siphovirus Gp157 family protein	H9C156	Pectobacterium_phage	2.5e-51	61.5
WP_004141609.1\|3543441_3543627_+	hypothetical protein	H9C155	Pectobacterium_phage	8.1e-07	44.3
WP_004199480.1\|3543836_3544061_+	DUF4224 domain-containing protein	H9C153	Pectobacterium_phage	4.5e-20	68.1
WP_016197576.1\|3544064_3545093_+\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	4.4e-94	54.1
WP_004150834.1\|3545368_3547021_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002898458.1\|3547290_3547950_+\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	3.2e-37	46.6
3548011:3548026	attR	NA	NA	NA	NA

DBSCAN-SWA_9

3632719 : 3718469

Salmonella_phage(50.98%)

capsid,tRNA,head,integrase,terminase,lysis,tail,protease,portal,plate

attL 3688245:3688263|attR 3718544:3718562

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002898139.1\|3632719_3634012_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	7.3e-94	44.7
WP_002898137.1\|3634102_3635446_-	replication-associated recombination protein RarA	G3MBE0	Bacillus_virus	7.3e-81	40.8
WP_002898132.1\|3635454_3636066_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_004150846.1\|3636188_3640442_-	DNA translocase FtsK	S5VNE3	Mycobacterium_phage	5.2e-88	49.2
WP_000228469.1\|3640577_3641072_-	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_004147787.1\|3641355_3641487_-	hypothetical protein	NA	NA	NA	NA
WP_002898019.1\|3641604_3642573_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	3.2e-62	44.0
WP_002898017.1\|3642687_3644454_+	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	W8CYL7	Bacillus_phage	2.3e-21	25.9
WP_004150847.1\|3644454_3646176_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3
WP_004141853.1\|3646202_3646922_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|3647275_3647494_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_002896522.1\|3647614_3649894_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
WP_002896520.1\|3649924_3650242_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
WP_002896516.1\|3650567_3650789_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
WP_004150848.1\|3650865_3652806_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.9e-37	40.5
WP_002896440.1\|3652802_3653918_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7
WP_002896437.1\|3654064_3655723_-	ATP-dependent endonuclease	NA	NA	NA	NA
WP_002896434.1\|3656142_3656838_+	aquaporin Z	NA	NA	NA	NA
WP_004147773.1\|3656953_3657853_+	lysine exporter LysO family protein	NA	NA	NA	NA
WP_002896412.1\|3657996_3659649_+	hydroxylamine reductase	NA	NA	NA	NA
WP_002896410.1\|3659659_3660628_+	NADH oxidoreductase	NA	NA	NA	NA
WP_002896408.1\|3660839_3661274_-	DoxX family protein	NA	NA	NA	NA
WP_002896406.1\|3661425_3663144_+	ubiquinone-dependent pyruvate dehydrogenase	NA	NA	NA	NA
WP_002896404.1\|3663182_3664184_+	low-specificity L-threonine aldolase	NA	NA	NA	NA
WP_002896401.1\|3664194_3665637_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_002896399.1\|3665724_3666738_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_002896397.1\|3666734_3667565_-	N-acetylmuramoyl-L-alanine amidase	A0A1B0UZW5	Roseobacter_phage	4.1e-05	31.6
WP_004150851.1\|3667596_3668736_-	GGDEF domain-containing protein	NA	NA	NA	NA
WP_002896394.1\|3669613_3670129_+	lipoprotein	NA	NA	NA	NA
WP_002896392.1\|3670355_3671084_+	arginine ABC transporter ATP-binding protein ArtP	G9BWD6	Planktothrix_phage	1.2e-29	37.1
WP_002896390.1\|3671104_3671836_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002896386.1\|3671842_3672559_+	arginine ABC transporter permease ArtQ	NA	NA	NA	NA
WP_004150852.1\|3672558_3673227_+	arginine ABC transporter permease ArtM	NA	NA	NA	NA
WP_002896384.1\|3673410_3674142_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002896382.1\|3674184_3675657_-	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	7.9e-28	31.8
WP_002896380.1\|3675653_3676370_-	response regulator transcription factor	W8CYM9	Bacillus_phage	2.1e-34	36.9
WP_002896378.1\|3676448_3677576_-	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	A0A2K5B251	Erysipelothrix_phage	1.3e-19	25.6
WP_002896376.1\|3677617_3678106_-	DUF2593 family protein	NA	NA	NA	NA
WP_002896372.1\|3678163_3679009_-	putrescine ABC transporter permease PotI	NA	NA	NA	NA
WP_002896371.1\|3679005_3679959_-	putrescine ABC transporter permease PotH	NA	NA	NA	NA
WP_002896370.1\|3679969_3681103_-	putrescine ABC transporter ATP-binding subunit PotG	G3M9Y6	Bacillus_virus	2.2e-30	34.9
WP_002896368.1\|3681266_3682379_-	spermidine/putrescine ABC transporter substrate-binding protein PotF	NA	NA	NA	NA
WP_002896365.1\|3682727_3683207_-	YbjN domain-containing protein	NA	NA	NA	NA
WP_002896363.1\|3683295_3684198_-	30S ribosomal protein S6--L-glutamate ligase	A0A1D7SR78	Cyanophage	2.0e-34	35.3
WP_002896354.1\|3685019_3685307_-	YbjC family protein	NA	NA	NA	NA
WP_002896352.1\|3685509_3685773_+	GrxA family glutaredoxin	A0A2I7SAE2	Vibrio_phage	1.6e-27	73.1
WP_002896351.1\|3685779_3686163_-	membrane protein	NA	NA	NA	NA
WP_004179131.1\|3686429_3688115_+	aspartate:alanine antiporter	NA	NA	NA	NA
WP_004226292.1\|3688106_3688229_-	hypothetical protein	NA	NA	NA	NA
3688245:3688263	attL	NA	NA	NA	NA
WP_000972391.1\|3688334_3688553_-	transcriptional activator Ogr/delta	Q53ZE7	Salmonella_virus	7.5e-20	69.0
WP_002896225.1\|3688644_3689745_-	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	4.9e-176	87.4
WP_002896224.1\|3689741_3690227_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	7.2e-63	75.6
WP_014342962.1\|3690223_3692617_-\|tail	phage tail tape measure protein	E5FFG5	Burkholderia_phage	1.1e-106	44.0
WP_002896220.1\|3692843_3692963_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.2e-13	87.2
WP_002896204.1\|3692977_3693277_-\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	3.7e-33	79.0
WP_002896201.1\|3693329_3693845_-\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	1.3e-81	85.4
WP_002896193.1\|3693854_3695027_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	1.9e-210	93.3
WP_002896191.1\|3695165_3696242_-\|tail	phage tail protein	Q37842	Escherichia_phage	1.2e-25	44.8
WP_004232615.1\|3696271_3696433_-	hypothetical protein	NA	NA	NA	NA
WP_002896186.1\|3696471_3697203_-	hypothetical protein	NA	NA	NA	NA
WP_004152882.1\|3697206_3700158_-	hypothetical protein	A0A2H4N7A3	Pectobacterium_phage	1.2e-06	50.9
WP_004150856.1\|3700159_3700759_-\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	1.3e-58	60.5
WP_002896182.1\|3700751_3701660_-\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	7.6e-106	66.9
WP_002896179.1\|3701646_3702009_-\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	5.8e-49	84.7
WP_002896177.1\|3702005_3702578_-\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	4.7e-77	72.3
WP_004226282.1\|3702692_3702857_-	hypothetical protein	NA	NA	NA	NA
WP_004199112.1\|3702855_3703365_+	hypothetical protein	NA	NA	NA	NA
WP_002896175.1\|3703361_3703808_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	2.2e-50	71.2
WP_002896172.1\|3703800_3704232_-\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	9.9e-64	82.5
WP_002896170.1\|3704194_3704341_-	hypothetical protein	A0A1S6KZX6	Salmonella_phage	6.0e-13	76.1
WP_002896168.1\|3704327_3704756_-\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	9.6e-51	77.9
WP_002896163.1\|3704752_3705136_-	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	2.1e-17	42.0
WP_002896161.1\|3705140_3705650_-	lysozyme	E5G6N1	Salmonella_phage	2.1e-81	83.4
WP_002896158.1\|3705630_3705846_-	hypothetical protein	E5G6N0	Salmonella_phage	3.6e-30	90.1
WP_002896155.1\|3705849_3706053_-\|tail	tail protein X	A0A1S6KZY4	Salmonella_phage	1.3e-29	88.1
WP_002896151.1\|3706052_3706517_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	8.4e-77	89.0
WP_000059191.1\|3706612_3707263_-\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	8.7e-112	96.3
WP_002895972.1\|3707266_3708325_-\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	1.1e-180	93.1
WP_002895967.1\|3708341_3709175_-\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	6.3e-123	88.8
WP_004150858.1\|3709317_3711084_+\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.0
WP_002895959.1\|3711083_3712109_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	7.6e-171	86.7
WP_004199124.1\|3712170_3713913_-	AIPR family protein	NA	NA	NA	NA
WP_000700647.1\|3714188_3714866_-	hypothetical protein	NA	NA	NA	NA
WP_001217575.1\|3714980_3715214_-	DinI family protein	E5G6M1	Salmonella_phage	4.7e-36	100.0
WP_001154434.1\|3715224_3715413_-	hypothetical protein	E5G6M0	Salmonella_phage	5.5e-27	98.4
WP_004178082.1\|3715513_3717001_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_014342959.1\|3717488_3718469_+\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	1.4e-97	57.2
3718544:3718562	attR	NA	NA	NA	NA

DBSCAN-SWA_10

4297296 : 4308950

Enterobacteria_phage(70.0%)

integrase

attL 4297148:4297161|attR 4301361:4301374

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4297148:4297161	attL	NA	NA	NA	NA
WP_004144574.1\|4297296_4298400_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	4.8e-62	40.5
WP_002889940.1\|4298410_4299664_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	8.9e-89	44.9
WP_002889938.1\|4300016_4301207_+\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	6.4e-145	62.7
WP_004152029.1\|4301194_4302145_+	AAA family ATPase	A0A1X9IGI7	Lactococcus_phage	1.2e-13	27.1
4301361:4301374	attR	NA	NA	NA	NA
WP_004152979.1\|4302144_4302570_+	hypothetical protein	NA	NA	NA	NA
WP_020802988.1\|4302916_4303066_-	hypothetical protein	NA	NA	NA	NA
WP_002889930.1\|4303138_4303705_-	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	1.5e-59	64.3
WP_002889919.1\|4303722_4303968_-	hypothetical protein	Q7M294	Enterobacteria_phage	1.9e-19	58.0
WP_002889917.1\|4303964_4304702_-	hypothetical protein	Q7M2A2	Enterobacteria_phage	9.0e-73	60.7
WP_004903606.1\|4305001_4305139_-	hypothetical protein	NA	NA	NA	NA
WP_002889915.1\|4305243_4305510_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	2.6e-30	71.6
WP_072028197.1\|4305512_4306064_+	ash family protein	Q7M2A7	Enterobacteria_phage	1.8e-33	70.4
WP_002889911.1\|4306060_4306288_+	hypothetical protein	NA	NA	NA	NA
WP_002889897.1\|4306284_4306605_+	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_002889890.1\|4306616_4308950_+	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	82.2

DBSCAN-SWA_11

4777133 : 4782958

Enterobacteria_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152207.1\|4777133_4779467_-	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	83.9
WP_004152206.1\|4779481_4779802_-	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_004152205.1\|4779798_4780026_-	hypothetical protein	NA	NA	NA	NA
WP_072093163.1\|4780022_4780565_-	ash family protein	Q7M2A7	Enterobacteria_phage	1.1e-30	69.4
WP_000556592.1\|4780567_4780834_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	2.0e-30	71.6
WP_004152204.1\|4781394_4782132_+	hypothetical protein	Q7M2A2	Enterobacteria_phage	1.1e-70	59.4
WP_004152203.1\|4782128_4782374_+	hypothetical protein	Q7M294	Enterobacteria_phage	5.5e-19	56.8
WP_004152202.1\|4782391_4782958_+	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	9.7e-59	63.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP040025

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1727 : 62949

uncultured_Caudovirales_phage(26.32%)

integrase,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001515717.1\|1727_2468_-\|integrase	site-specific integrase	I3WFA4	Macacine_betaherpesvirus	5.4e-25	58.6
WP_004152065.1\|3611_4559_+	sensor domain-containing diguanylate cyclase	G3MA91	Bacillus_virus	1.8e-12	30.6
WP_071527918.1\|4585_4897_-	EAL domain-containing protein	NA	NA	NA	NA
WP_011977741.1\|4916_5885_+\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	2.5e-184	98.1
WP_020444838.1\|7417_8872_+	EAL domain-containing protein	NA	NA	NA	NA
WP_004152070.1\|9854_11132_-	DUF2254 domain-containing protein	NA	NA	NA	NA
WP_004178088.1\|11194_13192_-	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	9.7e-21	25.9
WP_085955172.1\|14231_15439_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	1.7e-100	63.2
WP_004178091.1\|16867_17299_-	silver-binding protein SilE	NA	NA	NA	NA
WP_003032875.1\|17549_19025_-	copper/silver sensor histidine kinase SilS	W8CYF6	Bacillus_phage	1.0e-27	30.1
WP_001572351.1\|19017_19698_-	copper/silver response regulator transcription factor SilR	W8CYM9	Bacillus_phage	2.1e-31	35.6
WP_000475512.1\|19887_21273_+	Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC	NA	NA	NA	NA
WP_001246153.1\|21301_21655_+	cation efflux system protein CusF	NA	NA	NA	NA
WP_004152079.1\|21768_23061_+	Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB	NA	NA	NA	NA
WP_004098958.1\|23071_26218_+	Cu(+)/Ag(+) efflux RND transporter permease subunit SilA	S5VTK5	Leptospira_phage	4.0e-61	22.5
WP_000758228.1\|26304_26745_+	hypothetical protein	NA	NA	NA	NA
WP_004098955.1\|26871_29319_+	Ag(+)-translocating P-type ATPase SilP	A0A218MNH6	uncultured_virus	7.6e-84	35.8
WP_000843497.1\|29359_29557_+	DUF2933 domain-containing protein	NA	NA	NA	NA
WP_004118669.1\|29590_30328_-	peptidoglycan DD-metalloendopeptidase family protein	A0A2H4JAF5	uncultured_Caudovirales_phage	1.2e-11	32.5
WP_001023257.1\|30616_31066_-	copper resistance protein	NA	NA	NA	NA
WP_000925242.1\|31299_33117_+	multicopper oxidase PcoA	NA	NA	NA	NA
WP_001242438.1\|33116_34013_+	copper resistance outer membrane transporter PcoB	NA	NA	NA	NA
WP_000025662.1\|34052_34433_+	copper resistance system metallochaperone PcoC	NA	NA	NA	NA
WP_004118344.1\|34437_35367_+	copper resistance inner membrane protein PcoD	NA	NA	NA	NA
WP_001188930.1\|35421_36102_+	copper response regulator transcription factor PcoR	W8CYM9	Bacillus_phage	8.7e-30	34.4
WP_004152084.1\|36098_37499_+	copper resistance membrane spanning protein PcoS	W8CYF6	Bacillus_phage	4.1e-18	26.3
WP_004152085.1\|37715_38150_+	copper resistance system metallochaperone PcoE	NA	NA	NA	NA
WP_004152086.1\|38381_38561_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_031944101.1\|40303_40813_+	major intrinsic protein MIP	NA	NA	NA	NA
WP_004152091.1\|40862_41360_-	N-acetyltransferase	NA	NA	NA	NA
WP_004152092.1\|41691_42018_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004152093.1\|42014_42728_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	2.9e-92	77.0
WP_004182005.1\|42736_43282_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_004152095.1\|43357_43720_+	arsenic metallochaperone ArsD family protein	NA	NA	NA	NA
WP_004152096.1\|45616_46153_+	N-acetyltransferase	NA	NA	NA	NA
WP_004152097.1\|46185_46611_-	glutaredoxin-dependent arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	2.3e-52	72.9
WP_004152098.1\|46623_47913_-	arsenite efflux transporter membrane subunit ArsB	A0A2H4J144	uncultured_Caudovirales_phage	1.9e-171	74.0
WP_004152099.1\|47960_49712_-	arsenite efflux transporter ATPase subunit ArsA	NA	NA	NA	NA
WP_004152100.1\|49729_50092_-	arsenite efflux transporter metallochaperone ArsD	NA	NA	NA	NA
WP_004152101.1\|50141_50492_-	As(III)-sensing metalloregulatory transcriptional repressor ArsR	A0A2H4J145	uncultured_Caudovirales_phage	1.4e-23	50.9
WP_004152102.1\|50849_51119_+	hypothetical protein	NA	NA	NA	NA
WP_004152103.1\|51106_51682_+	hypothetical protein	NA	NA	NA	NA
WP_004152104.1\|51712_52207_+	DNA-binding protein	NA	NA	NA	NA
WP_004152105.1\|52250_52619_+	hypothetical protein	NA	NA	NA	NA
WP_004152106.1\|52652_52856_+	hemolysin expression modulator Hha	NA	NA	NA	NA
WP_004152107.1\|52904_53162_+	hypothetical protein	NA	NA	NA	NA
WP_004152108.1\|53237_53492_+	hypothetical protein	NA	NA	NA	NA
WP_003026799.1\|53667_53934_+	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_003026803.1\|53921_54404_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001567368.1\|54604_56008_+\|transposase	ISNCY-like element ISKpn21 family transposase	NA	NA	NA	NA
WP_001567369.1\|56036_56669_-	hypothetical protein	NA	NA	NA	NA
WP_003100847.1\|58186_58744_-	recombinase family protein	A0A0C4UR34	Shigella_phage	3.3e-59	63.2
WP_003100853.1\|58737_59109_-	hypothetical protein	NA	NA	NA	NA
WP_003100856.1\|59105_59606_-	hypothetical protein	NA	NA	NA	NA
WP_003100858.1\|59602_59929_-	hypothetical protein	NA	NA	NA	NA
WP_000215515.1\|60183_60540_-	cupin domain-containing protein	NA	NA	NA	NA
WP_108714626.1\|60529_60922_-	DUF86 domain-containing protein	NA	NA	NA	NA
WP_001067858.1\|60927_61632_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_001247892.1\|61755_62046_-	nucleotidyltransferase	NA	NA	NA	NA
WP_001067855.1\|62244_62949_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP040024

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

105886 : 140480

Salmonella_phage(61.54%)

integrase,transposase

attL 101532:101552|attR 150266:150286

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
101532:101552	attL	NA	NA	NA	NA
WP_096043117.1\|105886_107034_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	7.8e-148	92.6
WP_001187970.1\|107184_109638_+	phosphoadenosine phosphosulfate reductase	NA	NA	NA	NA
WP_000050848.1\|109839_110043_+	hypothetical protein	NA	NA	NA	NA
WP_000071870.1\|110114_110720_+	5'-deoxynucleotidase	NA	NA	NA	NA
WP_000184110.1\|110712_110982_+	hypothetical protein	NA	NA	NA	NA
WP_000260293.1\|110995_111214_+	hypothetical protein	NA	NA	NA	NA
WP_000064431.1\|111287_111845_+	pyruvate dehydrogenase	NA	NA	NA	NA
WP_000595210.1\|111919_112771_+	hypothetical protein	A0A219UQS0	Bacillus_phage	3.6e-09	29.4
WP_001032042.1\|112975_113122_+	hypothetical protein	NA	NA	NA	NA
WP_001077335.1\|113228_113615_+	hypothetical protein	NA	NA	NA	NA
WP_000122923.1\|113792_115520_+	hypothetical protein	A0A0P0ZFY3	Escherichia_phage	9.9e-14	32.6
WP_000268337.1\|115506_115785_+	hypothetical protein	NA	NA	NA	NA
WP_000714162.1\|115857_116097_+	permease	NA	NA	NA	NA
WP_000338626.1\|116106_116223_+	hypothetical protein	NA	NA	NA	NA
WP_000868821.1\|116343_116718_+	hypothetical protein	NA	NA	NA	NA
WP_000988732.1\|116831_117557_+	hypothetical protein	NA	NA	NA	NA
WP_014342218.1\|117531_117735_-	hypothetical protein	NA	NA	NA	NA
WP_014342219.1\|117797_121952_+	type IV secretion protein Rhs	A0A2H4JHK7	uncultured_Caudovirales_phage	5.7e-23	53.4
WP_000787563.1\|121948_122221_+	MafI family immunity protein	NA	NA	NA	NA
WP_000750746.1\|122225_122468_+	hypothetical protein	NA	NA	NA	NA
WP_011872911.1\|122515_122815_+	hypothetical protein	NA	NA	NA	NA
WP_000791469.1\|122981_123434_+	hypothetical protein	NA	NA	NA	NA
WP_000278322.1\|123449_124052_-	hypothetical protein	NA	NA	NA	NA
WP_000575657.1\|124313_124595_+	hypothetical protein	NA	NA	NA	NA
WP_000949433.1\|124893_125430_+	hypothetical protein	NA	NA	NA	NA
WP_000543934.1\|125432_126443_+\|integrase	tyrosine-type recombinase/integrase	A0A0K0N6I5	Gordonia_phage	3.1e-07	31.9
WP_000997323.1\|126447_127317_+	3'-5' exonuclease	A0A1S6L012	Salmonella_phage	3.5e-23	35.1
WP_000139717.1\|127313_127805_+	hypothetical protein	NA	NA	NA	NA
WP_014342220.1\|127850_127982_-	hypothetical protein	NA	NA	NA	NA
WP_014342221.1\|128131_129046_+	DNA replication terminus site-binding protein	NA	NA	NA	NA
WP_013362812.1\|131404_132373_-\|transposase	IS5-like element IS903B family transposase	A0A1B0VFY5	Salmonella_phage	1.6e-186	100.0
WP_085281207.1\|132316_132754_+\|transposase	transposase	A0A1B0VDR3	Salmonella_phage	4.5e-40	100.0
WP_014342101.1\|132901_133024_-	hypothetical protein	NA	NA	NA	NA
WP_001617865.1\|133003_133879_+	class A extended-spectrum beta-lactamase CTX-M-14	A0A1B0VBP7	Salmonella_phage	6.1e-153	99.6
WP_013362812.1\|133913_134882_+\|transposase	IS5-like element IS903B family transposase	A0A1B0VFY5	Salmonella_phage	1.6e-186	100.0
WP_001323888.1\|136793_136961_-	hypothetical protein	A0A1B0V7I9	Salmonella_phage	2.3e-24	98.2
WP_001161490.1\|136949_137510_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	1.1e-59	100.0
WP_001138014.1\|137513_140480_+\|transposase	Tn3-like element TnAs1 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	100.0
150266:150286	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP040026

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP040023

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP040025

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NZ_CP040024

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection