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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP049752 Raoultella ornithinolytica strain WM1 chromosome, complete genome 6 crisprs PD-DExK,csa3,cas3,DEDDh,DinG,WYL 1 1 5 1

Results visualization

1. NZ_CP049752
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP049752_1 1158276-1158393 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP049752_2 3503407-3503556 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP049752_3 3737100-3737202 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP049752_4 4526188-4526281 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP049752_5 4747664-4747753 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP049752_6 4799439-4799522 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP049752_3 3.1|3737134|35|NZ_CP049752|CRISPRCasFinder 3737134-3737168 35 NZ_CP049752.1 2483603-2483637 2 0.943

1. spacer 3.1|3737134|35|NZ_CP049752|CRISPRCasFinder matches to position: 2483603-2483637, mismatch: 2, identity: 0.943

ggattcggctcttgggccgtttgcattcggctctt	CRISPR spacer
ggattcggctcttgagccgtttccattcggctctt	Protospacer
**************.******* ************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP049752_6 6.1|4799465|32|NZ_CP049752|CRISPRCasFinder 4799465-4799496 32 NZ_CP027670 Simplicispira suum strain SC1-8 plasmid unnamed1, complete sequence 113688-113719 8 0.75
NZ_CP049752_6 6.1|4799465|32|NZ_CP049752|CRISPRCasFinder 4799465-4799496 32 MH576962 Streptomyces phage Satis, complete genome 85539-85570 11 0.656
NZ_CP049752_6 6.1|4799465|32|NZ_CP049752|CRISPRCasFinder 4799465-4799496 32 MK620894 Streptomyces phage Kradal, complete genome 85543-85574 11 0.656

1. spacer 6.1|4799465|32|NZ_CP049752|CRISPRCasFinder matches to NZ_CP027670 (Simplicispira suum strain SC1-8 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

gccgggtcgacaacggccagaacaatgcacca-	CRISPR spacer
gccgggtggacaacggtcagaacag-atgctag	Protospacer
******* ********.*******. ...*.* 

2. spacer 6.1|4799465|32|NZ_CP049752|CRISPRCasFinder matches to MH576962 (Streptomyces phage Satis, complete genome) position: , mismatch: 11, identity: 0.656

gccgggtcgacaacggccagaacaatgcacca	CRISPR spacer
gccgggtctacaacggccaggaccgcctgttc	Protospacer
******** ***********.** .. .... 

3. spacer 6.1|4799465|32|NZ_CP049752|CRISPRCasFinder matches to MK620894 (Streptomyces phage Kradal, complete genome) position: , mismatch: 11, identity: 0.656

gccgggtcgacaacggccagaacaatgcacca	CRISPR spacer
gccgggtctacaacggccaggaccgcctgttc	Protospacer
******** ***********.** .. .... 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 672213 : 710301 47 Escherichia_phage(30.23%) tail,head,terminase,holin,plate,integrase,tRNA,portal,capsid,lysis attL 670695:670743|attR 703996:704044
DBSCAN-SWA_2 1260970 : 1348936 83 Enterobacteria_phage(25.58%) tail,terminase,holin,tRNA,portal,protease NA
DBSCAN-SWA_3 2417131 : 2428280 10 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_4 2476804 : 2518860 59 Salmonella_phage(39.13%) holin,tail,integrase attL 2477783:2477805|attR 2519170:2519192
DBSCAN-SWA_5 3699798 : 3743184 60 Salmonella_phage(38.3%) terminase,holin,tail,head NA
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Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP049752.1|WP_165551764.1|2479223_2479568_-|hypothetical-protein 2479223_2479568_- 114 aa aa NA NA NA 2476804-2518860 yes