CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP047608	Methylobacterium sp. CLZ chromosome, complete genome	5 crisprs	DEDDh,csa3,WYL,cas3,Cas9_archaeal	1	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP047608_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047608_1

1022016-1022104

Orphan

Consensus_repeat	Method
GCATCGTCTTTTCCCGAAAGCCGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047608_1

>merge|NZ_CP047608|1|1022016-1022104|CRISPRCasFinder
GCATCGTCTTTTCCCGAAAGCCGGTGCCCACCTTTCGGGACGATGCTCGATCCTCTTGCTTGTGGCATCGTCTTTTTCCGAAAGCCGGT

>NZ_CP047608|1|1|1022016-1022104|CRISPRCasFinder
GCATCGTCTTTTCCCGAAAGCCGGT	GCCCACCTTTCGGGACGATGCTCGATCCTCTTGCTTGTG
GCATCGTCTTTTTCCGAAAGCCGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047608.1\|WP_003600463.1\|1026604_1026880_+\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
NZ_CP047608.1\|WP_166058631.1\|1025167_1026280_+\|branched-chain-amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380565
NZ_CP047608.1\|WP_166058621.1\|1015530_1016121_-\|transcriptional-repressor	unknown	unknown	gnl\|CDD\|223806
NZ_CP047608.1\|WP_166058630.1\|1023894_1024611_-\|XdhC/CoxF-family-protein	unknown	unknown	gnl\|CDD\|379212
NZ_CP047608.1\|WP_166058628.1\|1022299_1022893_-\|nucleotidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|133025
NZ_CP047608.1\|WP_166058622.1\|1016498_1017392_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213202
NZ_CP047608.1\|WP_166058625.1\|1019429_1020191_+\|cellulose-biosynthesis-protein-BcsS	unknown	unknown	gnl\|CDD\|379916
NZ_CP047608.1\|WP_108942803.1\|1022140_1022293_+\|DUF2256-domain-containing-protein	unknown	unknown	gnl\|CDD\|378353
NZ_CP047608.1\|WP_166058626.1\|1020197_1020932_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212491
NZ_CP047608.1\|WP_108938985.1\|1024675_1024999_-\|XdhC/CoxI-family-protein	unknown	unknown	gnl\|CDD\|224886
NZ_CP047608.1\|WP_108938972.1\|1012762_1013098_+\|antibiotic-biosynthesis-monooxygenase	unknown	unknown	gnl\|CDD\|225209
NZ_CP047608.1\|WP_166058623.1\|1017388_1018276_+\|metal-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224033
NZ_CP047608.1\|WP_166058629.1\|1022879_1023890_-\|molybdopterin-binding-protein	unknown	unknown	gnl\|CDD\|239599
NZ_CP047608.1\|WP_166058634.1\|1030192_1030585_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047608.1\|WP_108938978.1\|1018545_1019142_-\|exopolysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|368723
NZ_CP047608.1\|WP_166058632.1\|1026957_1029204_-\|DNA-topoisomerase-IV-subunit-A	unknown	unknown	gnl\|CDD\|235503
NZ_CP047608.1\|WP_108938971.1\|1011905_1012313_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP047608.1\|WP_166058627.1\|1021097_1021964_+\|formyl-transferase	unknown	unknown	gnl\|CDD\|223301
NZ_CP047608.1\|WP_166058633.1\|1029321_1030065_-\|DNA-repair-protein-RecO	unknown	unknown	gnl\|CDD\|234622
NZ_CP047608.1\|WP_166058620.1\|1013939_1015445_+\|sugar-transferase	unknown	unknown	gnl\|CDD\|274398

Protein	Function_ID	Function_description	E-value
NZ_CP047608.1\|WP_003600463.1\|1026604_1026880_+\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	9.22807e-42
NZ_CP047608.1\|WP_166058631.1\|1025167_1026280_+\|branched-chain-amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380565	cd06342, PBP1_ABC_LIVBP-like, type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.	5.26485e-108
NZ_CP047608.1\|WP_166058621.1\|1015530_1016121_-\|transcriptional-repressor	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	5.1538e-29
NZ_CP047608.1\|WP_166058630.1\|1023894_1024611_-\|XdhC/CoxF-family-protein	gnl\|CDD\|379212	pfam13478, XdhC_C, XdhC Rossmann domain. This entry is the rossmann domain found in the Xanthine dehydrogenase accessory protein.	3.34967e-52
NZ_CP047608.1\|WP_166058628.1\|1022299_1022893_-\|nucleotidyltransferase-family-protein	gnl\|CDD\|133025	cd04182, GT_2_like_f, GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	1.87322e-57
NZ_CP047608.1\|WP_166058622.1\|1016498_1017392_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213202	cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.	1.61066e-90
NZ_CP047608.1\|WP_166058625.1\|1019429_1020191_+\|cellulose-biosynthesis-protein-BcsS	gnl\|CDD\|379916	pfam17036, CBP_BcsS, Cellulose biosynthesis protein BcsS. This is a family of bacterial cellulose biosynthesis proteins. Cellulose is necessary for biofilm formation in bacteria. (Roemling U. and Galperin M.Y. "Bacterial cellulose biosynthesis. Diversity of operons and subunits" (manuscript in preparation)).	3.3855e-40
NZ_CP047608.1\|WP_108942803.1\|1022140_1022293_+\|DUF2256-domain-containing-protein	gnl\|CDD\|378353	pfam10013, DUF2256, Uncharacterized protein conserved in bacteria (DUF2256). Members of this family of hypothetical bacterial proteins have no known function.	2.76735e-16
NZ_CP047608.1\|WP_166058626.1\|1020197_1020932_-\|SDR-family-oxidoreductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.65914e-42
NZ_CP047608.1\|WP_108938985.1\|1024675_1024999_-\|XdhC/CoxI-family-protein	gnl\|CDD\|224886	COG1975, XdhC, Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family [Posttranslational modification, protein turnover, chaperones].	2.31123e-26
NZ_CP047608.1\|WP_108938972.1\|1012762_1013098_+\|antibiotic-biosynthesis-monooxygenase	gnl\|CDD\|225209	COG2329, COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides [General function prediction only].	2.70832e-25
NZ_CP047608.1\|WP_166058623.1\|1017388_1018276_+\|metal-ABC-transporter-permease	gnl\|CDD\|224033	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism].	2.29818e-49
NZ_CP047608.1\|WP_166058629.1\|1022879_1023890_-\|molybdopterin-binding-protein	gnl\|CDD\|239599	cd03522, MoeA_like, MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.	7.20484e-109
NZ_CP047608.1\|WP_108938978.1\|1018545_1019142_-\|exopolysaccharide-biosynthesis-protein	gnl\|CDD\|368723	pfam06055, ExoD, Exopolysaccharide synthesis, ExoD. Among the bacterial genes required for nodule invasion are the exo genes. These genes are involved in the production of an extracellular polysaccharide. Mutations in the exoD result in altered exopolysaccharide production and defects in nodule invasion.	2.24874e-43
NZ_CP047608.1\|WP_166058632.1\|1026957_1029204_-\|DNA-topoisomerase-IV-subunit-A	gnl\|CDD\|235503	PRK05561, PRK05561, DNA topoisomerase 4 subunit A.	0
NZ_CP047608.1\|WP_108938971.1\|1011905_1012313_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.2242e-11
NZ_CP047608.1\|WP_166058627.1\|1021097_1021964_+\|formyl-transferase	gnl\|CDD\|223301	COG0223, Fmt, Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis].	9.08848e-28
NZ_CP047608.1\|WP_166058633.1\|1029321_1030065_-\|DNA-repair-protein-RecO	gnl\|CDD\|234622	PRK00085, recO, DNA repair protein RecO; Reviewed.	5.1549e-61
NZ_CP047608.1\|WP_166058620.1\|1013939_1015445_+\|sugar-transferase	gnl\|CDD\|274398	TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP), E. coli WcaJ, Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes, such as Sinorhizobium ExoY and Lactococcus EpsD, lack the N-terminal domain and are not found by this model.	1.49588e-131

>NZ_CP047608.1|WP_166058627.1|1021097_1021964_+|formyl-transferase
MKFAFAGIDFLGGVFEGLIEAGWTPVKLFTRPCDGIYDFNDVVVAQARHHRIPIQLSRLLPEDIERLAHEHGRDVVLVVAGYPWLVRGWHGRLRYALNVHPSPLPTGRGPYPLFKAVLDRYESWGVTAHVLAEQGFDTGDILAQDIFAIDSHETHETLLTKCQMAARRLVLGPIGKDLAERWRKAEPQGDGSYWPRVNDADRTLDFRKDVAEVLRRVRAFGAIETIARLGQSRVFVAAADGWQEAHRHPPGTIVHRYRRHVVVAARDGYVQLTRWSPVPLNEAGQIGR
>NZ_CP047608.1|WP_166058626.1|1020197_1020932_-|SDR-family-oxidoreductase
MERVVIYGGTGGIGLATARALRARGVALHLVGRDAERLERAASDLGETGFTAGDVTDPTLFPRVANEAGARLGGLVYAVGTIQLAPLAKLDPARIEADFRINALGAFLAVQASAPALKAGAGEGSAGVVLFSTVAAAQGFSHHASVAMAKGAVEGLALSLAAELAPAIRINVVAPSLTRTPLAESITRNATLASGIASMHALQRLGEPEDVAALAAFLVGPEAAYVTGQVIGVDGGRSSLRTKG
>NZ_CP047608.1|WP_166058625.1|1019429_1020191_+|cellulose-biosynthesis-protein-BcsS
MSKRASRIPVDDADASSSTARADPWLALLALSAGLLCAPARADDAPLRAVLFGSMEAGASAFSASGAKLVFDRFDRDGPVALVTAGGGARLEGGGQAPTMVRFTALGAALAGYQFIREWGAVTVFAGPEASWETLSGSGLVQVLPLRAGLRLHGEVWARPTETTLLTATAILGSARGDAYARLSWGTALFGAYLGPEASVYGDQADYRKWSVGLHVTDYAMGGYRFRLSASGQLETPLNQWSPYVSLAIWSTL
>NZ_CP047608.1|WP_108938978.1|1018545_1019142_-|exopolysaccharide-biosynthesis-protein
MLASQESERLTVGDIVAVLRDRAFALLVVLLGLPNCLPMPPPIPLVCGLVLLVIAIQIVAGMSAPWLPRRLLNQSIARATVEKAVNRAVPLLRRLERWSRPRLSVFDGAVGMRGMGVLILALALALIVAPPFFGQIPLGLAVSLIGLGLVERDGFVVLIGLLIGGVGVGISIGFVYTLFASLMGAFAWLSQAIPGLGL
>NZ_CP047608.1|WP_166058623.1|1017388_1018276_+|metal-ABC-transporter-permease
MTLAELTDLLVGPFVEFGFMRRALAGCLALSLSAPPLGVFLMLRRMSLMSEAMSHAILPGAAAGFLVAGLSLPAMTLGGLVAGLAVALAAGLVTRSTVLKEDASLAAFYLISLAGGVFLVSLRGSQVDLLHILFGTVLALDDDALTLLGGISSLTLVALALLYRPLVIECVDPLFLRTVSRAGGPVHSAFLALVVVNLVGGFQALGTLLAVGLMLLPAITARFWAADLSGLIPVAMLVSMLSSVTGLLVSYHAGIRLPTGPAIVLAAGALYLVSMLVGPRGGLIHRLVRRRHLEA
>NZ_CP047608.1|WP_166058622.1|1016498_1017392_+|ABC-transporter-ATP-binding-protein
MSAGPARTGAIRFRSLTLGYDRHPAVHHLDGTIAAGDLLAVVGPNGAGKSTLLKGIVGEIRPLDGAVEAETRPGAIAYLPQAAEIDRSFPLSVLDLVAMGLWRPLGAWRSLTRQRPHLIDALAAVGLTGFEDRPIGTLSGGQFQRALFARLILQDARIILLDEPFTGIDERTTADLLALIRGWHREGRTVVAALHDLSQVRAHFSSTLVIARRPIAWGPTHEVLTPPVLARALRLSEAWDEAAAICRHEAPPPTEGAPAAETHDHGHGHEHHGHDHGHAPHDHHDHHHAHTHHRAVS
>NZ_CP047608.1|WP_166058621.1|1015530_1016121_-|transcriptional-repressor
MRGHAPHEHGQGDGSGDRDGHAHGHAHHPHGHDGAGCGGGHEAGDVIERAERLCQTRGLQFTRLRRDVLAAVAAEHRPLGAYDIAERMSAPGRRVAAVSVYRALDFLTEQGFVHRISSRNAFVSCGHEHGAGAGLVFLICRTCGGIDEMTAPAVESALDQTLAGTGFSPTSRILEVEGECGACRGRADAPNEPDRA
>NZ_CP047608.1|WP_166058620.1|1013939_1015445_+|sugar-transferase
MFHERPPQQYQRLPGDRVRRSVWAALLPQRRRTALRVGISAALLTADLMAILAVGFAVDAAYHAYLGDGVLISLTQSMNLQTAGFLALIVVVTNLVRGEYSIERCLSQTPHGQRRATLWLMAWAVALLAGFATKTTQDFSRVASVAFFLTGLPVTILVRAAAVALVRRSSTSASPSVSRVHLVGYEEDVTNFYANNDVEALGLRVVGTSYLRRFDRASGSASAETLLAEDLDLAVSVVRFLRPDDVFVLVPWSEPADIERCIDAFLRVPAALHLRPGTMMDRFPDLQVARVGRLSGINIGRRPLSVGEVLLKRAFDVTLAGIGLLLLAPLFVALAVLIKLDSPGPVFFRQRRYGFNQEAFGVFKFRSMKAAPDAPFRQASRNDDRITRIGALLRKTNLDELPQLINVIRGDMSLVGPRPHALAHDRSFERRIALYARRHNVKPGITGWAQVNGFRGETLTDEAMEARVQADLHYIDNWSLWLDITILVRTIASPRAYRNAF
>NZ_CP047608.1|WP_108938972.1|1012762_1013098_+|antibiotic-biosynthesis-monooxygenase
MFIAMNRFKVVKESAQDFEQVWLGRDSHLGEMEGFVEFHLLKGPEAEDHILYASHTIWRSRADFEAWTRSEQFRKAHGRVPGTKPLYLGHPQFEGFETIQTVARPENEQAA
>NZ_CP047608.1|WP_108938971.1|1011905_1012313_-|helix-turn-helix-transcriptional-regulator
MMPKQTTDVDRLVGLRITALRKARGLSQTALGTAVGVTFQQVQKYEKGQNRVGAGRLREIARLLEVPVSAFFEEGDGAAAQEQTEVFGFLRAHGAVDLLRAFATIEDDQLRREVLAIVRSAARLGRKKEPEVLDA
>NZ_CP047608.1|WP_108942803.1|1022140_1022293_+|DUF2256-domain-containing-protein
MRRKGDLPQKICAQCARPFAWRKKWERVWDEVRYCSDRCRAEAKRAARKT
>NZ_CP047608.1|WP_166058628.1|1022299_1022893_-|nucleotidyltransferase-family-protein
MTVSEPCIGAVILAAGLGSRFGPAPKMLAPYAGRPMVRCAAEAALASAARPVVAVLGAHAGAVRAALAGLDLTLVENLDPAAGLSASLRVGLAALPPETEAAVVLLGDMPRIEAAHIDALIAAYAAAEPRPSAVVPVSGGRRGNPVLLDLTRLAADLAALTGDRGAGPLLRRRGDVLEVPADPAVIFDVDTPEGLGG
>NZ_CP047608.1|WP_166058629.1|1022879_1023890_-|molybdopterin-binding-protein
MQFGPVATRDSAGLIAAHTVRAEGASLKKGRPIPAEEAQRLAESGIPEILAVRLDPGDVGEDAAAARLAGHLAGPGLRAEAPFTGRCNLFAEAAGVFVVEPACIDAVNAVDEAITVATLPAFRPVAAGEMVATVKIIPYAVAAAPLERALAAAIEPPMRLAPYRVARVGVVSTLLPGLKAATVAKTLRVLAERLASTGAQIAIESRVRHEAGAVAGAMAAAVAEGAELVVVFGASAIADRRDVIPAGLEAAGGRVEQFGMPVDPGNLLLLGALGDVPVIGAPGCARSPKENGFDFVLHRLLAGLAVTRADIVRLGVGGLLTEIPLRGQPRSGGDGV
>NZ_CP047608.1|WP_166058630.1|1023894_1024611_-|XdhC/CoxF-family-protein
MRLDTLSALNAERAARRPALIVTDPEDGGQRLVRAAEIDADPLGPLLRERLRSGRSGLGEGTSGRSVFVAVHAPPVRFVVVGAVHISQALVPLAGQNGLDLTVIDPRTAFASPERFPGVRLIAAWPDEALREIGPLDAYTALAALTHDPKIDDPALMAALRADCAYIGALGSRKTHARRVERLREAGFDEAAIGRIHAPIGLDIGAVSPAEIALSILAQLVATLRKGRIDDRDAAAGR
>NZ_CP047608.1|WP_108938985.1|1024675_1024999_-|XdhC/CoxI-family-protein
MLSTEDDILRAAEGWRREGRAVALATVIETWGSAPRPVGSHLVIDGDSRFLGSVSGGCVEGEVITEALDVIENGRPRTLEFGVADETAWRAGLSCGGRIRVFVERID
>NZ_CP047608.1|WP_166058631.1|1025167_1026280_+|branched-chain-amino-acid-ABC-transporter-substrate-binding-protein
MTKRSVLATLLALALTGPVGAAEPLKIGLVAPLSGPDAGFGQGARLGAEQAVAEINRAGGVLGRKLQLVVQDDAADPKQAAAVARRFAASGVRFVIGPLTSGASAAASTVFEEAGIVSLTPGATWAPLTRRGAGLLFRLSGSDAQQGALGGTLLAERFRGKPVAIVHDKTSFGRGLADEAARALKARGGGERLFEGASRDDREIAALVAKLRALGIEAIYFGGLSVPAANLIRAMREAGLTTLVIGSDGLLDKEFSQVPGAEGTLMTVPAAPPRLPEPKGTRTPRGPEADLFAGPAYAAVEVVRQGIEAARSAEPARVAATLHSGAPLRTVLGEVAFDAGGDLVKPPFTVFAWRRLPDGRLDFAGNEVSP
>NZ_CP047608.1|WP_003600463.1|1026604_1026880_+|translation-initiation-factor-IF-1
MAKEELMQFDGLVVEILPDARYRVQLDQGHEIVAYTAGKMKKNRIKTLAGDRVTVEMSPYDLEKGRLVFRHKDERSGPRPPQRGGQQFRRR
>NZ_CP047608.1|WP_166058632.1|1026957_1029204_-|DNA-topoisomerase-IV-subunit-A
MGQPVLPPPGDGIESVELKTALEERYYAYALSTIMQRALPDARDGLKPVHRRILYGMRLLRLDPTSAFKKCAKIVGDVMGDFHPHGDQAIYDALVRLSQDFAQRYPLVDGQGNFGNIDGDGPAAYRYTEARLTEVARLLLDGIDEDTVDFRASYNGEKEEPVVLPAAFPNLLANGSQGIAVGMATSIPPHNAAELCDAALYLIQNREATSEQLCTFVQGPDFPTGGILIDSPETIREAYRTGRGGFRVRARWAKEEQGRGTWNIVVTEIPYGVPKARLIEKLADLLQEKKLPLLADVRDESAEDVRVVLEPRSRSVDPVMLMESLFRLSELEARVPLNLNVLVGGVVPRVIGLAECLREWVDHRRVVLQRRSSYRLGQIERRLEILGGLLIVYLDLDEVIRIIREEDEPKAALMARFELTELQANAILDTRLRSLRKLEEMELKREFEELTKEKEGIEALLGSEKLQWTEITKQIRAVKKTFGPETKLGKRRTTLENPPDTAGIDFTAAMVEREPITVILSEKGWIRALKGHVTELSGVAFKGDDTLKVSFLSETTAKILLLASNGKVFTLEASKLPGGRGFGDPVRLMVDLDDGTEIVAALPYKPESKLLIAGSDGRGFIAPSDALVANTRKGKAILGLDEGASAVLLVPAEGDHIAVCSSDKLMLVFPASEVTELGRGKGVRLQRCRQSRLADACVFALAEGLPWRDGSGQARLAQSAMLEKWMGHRSDAGTLMTRSFPKFERFGK
>NZ_CP047608.1|WP_166058633.1|1029321_1030065_-|DNA-repair-protein-RecO
MQWTDEGLVIGLRKHGETGIVLELMTPEHGRHLGLVHGGRSRRMQPMLQPGNTLRATWRARLDGALGSYAVEPLTMNASRLMDSGLALYGVAHLSALLRLLPERDPHPDLYAAAQVLIGHLDDPEIAPALMVRFELALLAGLGFGLDLSHCAATGANDALVYVSPKSGRAVSASAGEPFRDRLLALPPFLRDRDQPGSGWRTPDAGDVREGFTLTGYFLDQHVWRPRAQDTPEERARFVALGTGQGR
>NZ_CP047608.1|WP_166058634.1|1030192_1030585_+|hypothetical-protein
MIGRRSGVVLAIIFTVGGCTATAAPPPPSGATGTLRERIAALARQQVAFGSVSLIPVRFAHSRIAGPFEDGGRQLTCVSTRMSGRTFGKPERPKLVVREEAGALTVLRDEEEVCEGHRSEPFPELDTPGG

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Crispr_ID: NZ_CP047608_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047608_2

1410357-1410454

Orphan

Consensus_repeat	Method
TTCCGAAAGCTGGTGGCCACCTTTCGGGACGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047608_2

>merge|NZ_CP047608|2|1410357-1410454|CRISPRCasFinder
TTCCGAAAGCTGGTGGCCACCTTTCGGGACGATGCGCACGCTCCTTGTCTTTGCATCGTCTTGTTCCGAAAGCCGGTGGCCACCTTTCGGGACGATGC

>NZ_CP047608|2|2|1410357-1410454|CRISPRCasFinder
TTCCGAAAGCTGGTGGCCACCTTTCGGGACGATGC	GCACGCTCCTTGTCTTTGCATCGTCTTG
TTCCGAAAGCCGGTGGCCACCTTTCGGGACGATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047608.1\|WP_166058863.1\|1418223_1418595_-\|PepSY-domain-containing-protein	unknown	unknown	gnl\|CDD\|377032
NZ_CP047608.1\|WP_166061378.1\|1400614_1402678_+\|penicillin-binding-protein-1C	unknown	unknown	gnl\|CDD\|227289
NZ_CP047608.1\|WP_166058854.1\|1403159_1403951_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197775
NZ_CP047608.1\|WP_166058861.1\|1413651_1415202_-\|c-type-cytochrome-biogenesis-protein-CcmI	unknown	unknown	gnl\|CDD\|226687
NZ_CP047608.1\|WP_166058858.1\|1407758_1408490_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047608.1\|WP_166058856.1\|1404645_1406829_-\|marine-proteobacterial-sortase-target-protein	unknown	unknown	gnl\|CDD\|274782
NZ_CP047608.1\|WP_108939402.1\|1409559_1410225_-\|DUF1007-family-protein	unknown	unknown	gnl\|CDD\|368801
NZ_CP047608.1\|WP_166058862.1\|1417093_1417492_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl\|CDD\|350219
NZ_CP047608.1\|WP_133087882.1\|1415349_1416765_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|340430
NZ_CP047608.1\|WP_166058859.1\|1408555_1409569_-\|nickel-transporter	unknown	unknown	gnl\|CDD\|225125
NZ_CP047608.1\|WP_166058860.1\|1410910_1412911_-\|heme-lyase-CcmF/NrfE-family-subunit	unknown	unknown	gnl\|CDD\|224061
NZ_CP047608.1\|WP_133087878.1\|1410455_1410914_-\|cytochrome-c-type-biogenesis-protein-CcmH	unknown	unknown	gnl\|CDD\|377161
NZ_CP047608.1\|WP_133087883.1\|1416857_1417094_+\|transcription-factor	unknown	unknown	gnl\|CDD\|377904
NZ_CP047608.1\|WP_166058853.1\|1402829_1403150_+\|quaternary-ammonium-compound-efflux-SMR-transporter-SugE	unknown	unknown	gnl\|CDD\|171110
NZ_CP047608.1\|WP_166058864.1\|1418791_1419019_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047608.1\|WP_166058857.1\|1407062_1407671_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NZ_CP047608.1\|WP_012453322.1\|1417496_1418174_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP047608.1\|WP_166058852.1\|1395252_1400559_+\|alpha-2-macroglobulin-family-protein	unknown	unknown	gnl\|CDD\|225248
NZ_CP047608.1\|WP_166058855.1\|1404001_1404649_-\|class-GN-sortase	unknown	unknown	gnl\|CDD\|163496
NZ_CP047608.1\|WP_133087880.1\|1412969_1413491_-\|cytochrome-c-maturation-protein-CcmE	unknown	unknown	gnl\|CDD\|237317

Protein	Function_ID	Function_description	E-value
NZ_CP047608.1\|WP_166058863.1\|1418223_1418595_-\|PepSY-domain-containing-protein	gnl\|CDD\|377032	pfam03413, PepSY, Peptidase propeptide and YPEB domain. This region is likely to have an protease inhibitory function (personal obs:C Yeats). This model is likely to miss some members of this family as the separation from signal to noise is not clear. The name is derived from Peptidase & Bacillus subtilis YPEB.	0.00761852
NZ_CP047608.1\|WP_166061378.1\|1400614_1402678_+\|penicillin-binding-protein-1C	gnl\|CDD\|227289	COG4953, PbpC, Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell envelope biogenesis, outer membrane].	0
NZ_CP047608.1\|WP_166058854.1\|1403159_1403951_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	1.54243e-06
NZ_CP047608.1\|WP_166058861.1\|1413651_1415202_-\|c-type-cytochrome-biogenesis-protein-CcmI	gnl\|CDD\|226687	COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones].	2.38875e-46
NZ_CP047608.1\|WP_012453322.1\|1417496_1418174_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	5.1224e-87
NZ_CP047608.1\|WP_166058860.1\|1410910_1412911_-\|heme-lyase-CcmF/NrfE-family-subunit	gnl\|CDD\|224061	COG1138, CcmF, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP047608.1\|WP_108939402.1\|1409559_1410225_-\|DUF1007-family-protein	gnl\|CDD\|368801	pfam06226, DUF1007, Protein of unknown function (DUF1007). Family of conserved bacterial proteins with unknown function.	2.69333e-76
NZ_CP047608.1\|WP_166058862.1\|1417093_1417492_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl\|CDD\|350219	cd09871, PIN_MtVapC28-VapC30-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC28 and 30 and related proteins. This subfamily includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis VapC28 and VapC30 toxins. M. tuberculosis VapC28 and VapC30 both cleave tRNA25Ser-TGA and tRNA28Ser-CGA. It belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is a PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include FitB toxin of the FitAB TA system, eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	5.64691e-49
NZ_CP047608.1\|WP_133087882.1\|1415349_1416765_-\|sensor-histidine-kinase	gnl\|CDD\|340430	cd16954, HATPase_PhoQ-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli PhoQ and Providencia stuartii AarG. This family includes histidine kinase-like ATPase (HATPase) domain of two-component sensor histidine kinases similar to Escherichia coli PhoQ and Providencia stuartii AarG. PhoQ is the histidine kinase (HK) of the PhoP-PhoQ two-component regulatory system (TCS), which responds to the levels of Mg2+ and Ca2+, controls virulence, mediates the adaptation to Mg2+-limiting environments, and regulates numerous cellular activities. Providencia stuartii AarG is a putative sensor kinase which controls the expression of the 2'-N-acetyltransferase and an intrinsic multiple antibiotic resistance (Mar) response in Providencia stuartii. The AarG product is similar to PhoQ in that it is able to restore wild-type levels of resistance to a Salmonella typhimurium phoQ mutant. However, the expression of the 2'-N-acetyltransferase gene and of aarP (a gene encoding a transcriptional activator of 2'-N-acetyltransferase) are not significantly affected by the levels of Mg2+ or Ca2+. Most proteins in this group contain a histidine kinase dimerization and phosphoacceptor domain (HisKA); some have an accessory HAMP sensor domain, and some have an intracellular membrane -interaction PhoQ sensor domain.	2.17869e-41
NZ_CP047608.1\|WP_166058859.1\|1408555_1409569_-\|nickel-transporter	gnl\|CDD\|225125	COG2215, COG2215, ABC-type uncharacterized transport system, permease component [General function prediction only].	3.27748e-44
NZ_CP047608.1\|WP_166058856.1\|1404645_1406829_-\|marine-proteobacterial-sortase-target-protein	gnl\|CDD\|274782	TIGR03788, marine_srt_targ, marine proteobacterial sortase target protein. Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).	0
NZ_CP047608.1\|WP_133087878.1\|1410455_1410914_-\|cytochrome-c-type-biogenesis-protein-CcmH	gnl\|CDD\|377161	pfam03918, CcmH, Cytochrome C biogenesis protein. Members of this family include NrfF, CcmH, CycL, Ccl2.	5.11574e-68
NZ_CP047608.1\|WP_133087883.1\|1416857_1417094_+\|transcription-factor	gnl\|CDD\|377904	pfam07704, PSK_trans_fac, Rv0623-like transcription factor. This entry represents the Rv0623-like family of transcription factors associated with the PSK operon.	2.40013e-11
NZ_CP047608.1\|WP_166058853.1\|1402829_1403150_+\|quaternary-ammonium-compound-efflux-SMR-transporter-SugE	gnl\|CDD\|171110	PRK11431, PRK11431, quaternary ammonium compound efflux SMR transporter SugE.	4.08841e-30
NZ_CP047608.1\|WP_166058857.1\|1407062_1407671_+\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	2.42706e-20
NZ_CP047608.1\|WP_166058852.1\|1395252_1400559_+\|alpha-2-macroglobulin-family-protein	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	0
NZ_CP047608.1\|WP_166058855.1\|1404001_1404649_-\|class-GN-sortase	gnl\|CDD\|163496	TIGR03784, marine_sortase, sortase, marine proteobacterial type. Members of this protein family are sortase enzymes, cysteine transpeptidases involved in protein sorting activities. Members of this family tend to be found in proteobacteria, rather than in Gram-positive bacteria where sortases attach proteins to the Gram-positive cell wall or participate in pilin cross-linking. Many species with this sortase appear to contain a signal target sequence, a protein with a Vault protein inter-alpha-trypsin domain (pfam08487) and a von Willebrand factor type A domain (pfam00092), encoded by an adjacent gene. These sortases are designated subfamily 6 according to Comfort and Clubb (2004).	1.96247e-62
NZ_CP047608.1\|WP_133087880.1\|1412969_1413491_-\|cytochrome-c-maturation-protein-CcmE	gnl\|CDD\|237317	PRK13254, PRK13254, cytochrome c maturation protein CcmE.	6.63719e-82

>NZ_CP047608.1|WP_108939402.1|1409559_1410225_-|DUF1007-family-protein
MPIAALLRRLALTAALGLAAVAPALAHPHVWITAKAELAYEAGRVTGIRHAWTFDPEYTAFLTQGLDANGDGKLSPEELQGSAKEQAANLAEFAYFTKLKVAGKEQVFAEPQEARMAMEGGKLTLSFLLPLKTPVAQGRGVAAVEVYDPTYFIAFSLAEGADAVRLAGAAPGCSMTVTRAKNAEPAVASAGQSMTEAMFEALTTASNYGEQFANRAIVACP
>NZ_CP047608.1|WP_166058859.1|1408555_1409569_-|nickel-transporter
MSLTAALRPGGATGSRWPLRLALAAGAVLAAAGLLAAIAAALGPVAAPPPRSPFGIGFREAAPAATGLGGWLLAVQSNFSSHLRAAVTALKAGGPWTPLVVMGFAYGVFHAAGPGHGKAVIAGYIVAGERTLRRGFALSAAAALLQALVAIAIVGVGVFILKATASGMTRAGTLIETVSFALVAALGAAVTWRKAGRLAGLVSDTPAEACGPGCGHAHLTDAAALDRLGGWRERAGVVLAAGSRPCAGAVLILVFCAAQGMLAAGIAATFAMALGTALTTGALASLAVFAKALALRLAGGRGQTGAVAVGGLELLAGAFVLVLGLAMLSGLATGLGG
>NZ_CP047608.1|WP_166058858.1|1407758_1408490_-|hypothetical-protein
MSDHALDAFAPILNWRLLKGSHSFPGPDGGTCINEAAMVAAGLPYRAITATEDCPPCFSRPLAAYALGLNDAMPETERQGLMTFVLRLSGSADAPAIEAARTAFLALESARRILPPLLDAASLPALAARCETASDAQSAMVALRAAEMQGGALAHAAAGRHAWIAGARAAAAARTATAALRAFTDPGSAAEVAEGAAPFTEGTWRIALDILDGALGIGRQAPAIDLVSARDRLEAARTHTKSV
>NZ_CP047608.1|WP_166058857.1|1407062_1407671_+|histidine-phosphatase-family-protein
MSRLSEPSTRIVCIRHGESTFNAHHEATGRDPGHIDARLSDRGHAQVAAARKRLSDIPFELVVTSPLTRALQTTAGIFSDHPARPDVLVEVLHRECQESSCDIGRAASVLAREFPAFRVDHLPETWWYADGEAGPEGWHVEPRTLFDQRVSGFRDWLRARPERTIAVVGHCTFFYHLTGRWLANCESLDVDLADEPLPRAYG
>NZ_CP047608.1|WP_166058856.1|1404645_1406829_-|marine-proteobacterial-sortase-target-protein
MEVPMLPIPLSPHHPIPLVRPAPGLTRNLLLGPLIALLLALVGGIAPARAGDGSGTLLLRSEGGAPVEAPRLRADAAITVSGLTARATITQAFRNTTAEWVEGTYLFPLPEDAAVDTMKLVVGDRVIVAEIREREAARRAYEAAKPEGKAAALTEQQRPNLFTNAVANIGPGETVLVQIEYQQPVRSSAGTYALRLPTVAAPRYNPAPPSVKSVAEGVPAADPVPDRDKIAAPVLDPARHTPINPLTLTIDLKAGFPLGSVRSATHAIRVEELSEAERRITLVDGATAADRDFELTWTAAPGEAPALGLFREQVAGGEAVLAVVTPPAAASPAASVPRDVVFVIDNSGSMGGASMRQAKASLLIGLDRLRAGDRFNVIRFDDSFDTLFPDLVPADETHLDRAKRFVAGLEASGGTEMLAPLRAALRDTAPGETGRLRQVVFLTDGAIGNEAQIFSAIAAERGRSRLFMVGIGSAPNGHLMSHAAELGQGSFTQIGTPDQVTERMRALLMKLENPAVTDLTATFSEPGVDATPARLPDLYRGEPLTLPAQMAQARGTLTLAGRIGGEPWQAVLSLDAAQAGTGIGKLWARAKIAEAETARLTGRLSPDAADAAILRLALDHGLTTRLTSLVAVDATPRRPEGARLVSTELPLNLPAGWDFASLFGEGEAQPLAPPPRQRRASAPAPQLAAVQSVALPQTATDFEIRAWLGGLLLALGLGLFLRRRAAA
>NZ_CP047608.1|WP_166058855.1|1404001_1404649_-|class-GN-sortase
MSGIAKRDAVVRRPGRRGLEASPAPWPASWPAPWPALLLVAAGLVLLAQAAWIPAKAALAQELLERAFARSLAEGTGQRPWPWADTVPVARIVFPGLNERYVALAGSSGQALAFGPGHVEGTPEAGEPGIAVYAAHRDTQFRSLGQLAAGDPIEVVRRDGRTVRFRVTGRRVVRWDASGLDPDAPGRRLVLATCWPLDAVTPGPERLLVEAVAEP
>NZ_CP047608.1|WP_166058854.1|1403159_1403951_-|helix-turn-helix-transcriptional-regulator
MPPIEADFPETELPDAQSRLIAAAVREALARRRMSRQALADAARISISTLEKALSGRRPFTLATTLRLEEALGLPLRVPAAAPPMASADKARHAPEEFGSYTREAVAFLEGRYLTLRPSFGQAGAIFAYRTEIAWDTESARLVFREAERLDAPFAQSGTVSVPNQSGQIYLVTNFQGQYRLAMLGRPTIQGEMFGILTTLFSGRGTQLTPAATPLALVPERGALADGAQYGRITAGMACEPAYRQILTRVREDVFAVFPGCEG
>NZ_CP047608.1|WP_166058853.1|1402829_1403150_+|quaternary-ammonium-compound-efflux-SMR-transporter-SugE
MPWIVLVVAGLLEVVWAFTMKQSEGFSRFWPSVVTLIAMVLSVVCLAWSMRSLPLGTAYTIWTGIGAVGAFIVGIAFLGEAMNATRILAAVLIVSGLVLMKLSSPA
>NZ_CP047608.1|WP_166061378.1|1400614_1402678_+|penicillin-binding-protein-1C
MGAALAFSVALVALIAGALWRYAATLPPLDLTQAKLRSTVILDRKGQLLRPFATADGRWRLPVTADAIDPRYLAMLKAYEDRRFDSHPGIDPAATARAAWQWLAHRRIVSGGSTLSMQVARLVEPRAERSLAAKLRQMVRAVELERTLGKSGVLNLYLALAPYGGPVEGVRAASLAYFGREPARLSFAESALLVALPQSPEARRSDRFAANARRARDRVLDIAAARGVLTDTEAQAAKAEPVPSTRKHFPMLAAHAAEQAHAADPEARAQHLTLDARLQASLEALAAERAAATGPALSAAILALDNRTGAVLAHVGSAGYLDVARAGAVDATQAVRSPGSALKPFIYALAFENGLAHPETLLDDRPARFAASYAPENFDMGYRGTVTARVALQQSLNLPAVDLLDAVGAARFVARLRGAGATILLPRDTAPGLPVALGGLGITLTDLARLYAGLARGGSVPALARRLDGPPAAPEPERRVADPVAAWYVADILRGAPPPENALPGRISFKTGTSYGYRDAWAVGFDARVTIAVWIGRPDGASVPGLVGRTHAAPILFDAFARLGGEPEALPRPRDALVVATAALPPPLRHIRRDTPKTFAATLGVPLKIAYPPDGARVDLGLSEGAQARLALKALGGQPPLTWMVDGLPVAEAMRRQSEWSPEGAGFARISVMDAAGASDSVLVRLE
>NZ_CP047608.1|WP_166058852.1|1395252_1400559_+|alpha-2-macroglobulin-family-protein
MSQGKSLGRIGAALIGATLLGGSALAQAPAQAPPARSATAPVTKSFLREALASAGVRLETTLRSEAPPGTKTAAQWRREAEIAARSEGAEPDAELNAYAAAVAADPNDLRNWLDYARAANAAGNDEERSDYSARFKLKSRASAAAYQGYLRARNPADEARALARLGEIQAAQAEWRPALEAYRASLAIRDEAQTRAAYEKLREEHGFRILDYKVDSDAAAPRVCYTFSESLVPKTDYSPYIAVSGATNAAVTAEGSQVCVDGLKHSERYAFVVRQGLPSSVGENLLKSADYEVYVRDRSPQVRFTGRNYVLPRTGQAGVPLISVNANKLDVEVLRIGDRGLLPALRSEEFLSQLSGSTAKTIADQKGQRVWKGTLDTAKAETNREAVTAFPVLQAVGKLEPGLYLMLAKPTGTTDSSEDEYGGYEAQATQWFVVSDLGLTAFKGRDGVHVFARSLASAKTVSGAEIRLVARNNDVLATAKTDGQGHAAFPAGLARGEGGLAPGLVVAQVGDDYGFLDLALGAFDLSDRGVKGRPAPGGAEAYVFPERGVYRSGETVQLTALLRDPQGAAVSGLPLTLVVKRPDGVEYRRAAVADEGLGGRSLALPLMAGAMHGTWRVSAYTDPKAPPVGEASWLVEDYVPERLEVNLTPKTPSLTRGEPAVIDVAARYLYGAPGSGLEVSGSVAVQAAANPGIKGLDGFSIGLDDEAVEATTAEIDAKATTDAQGKTSLTVPVQEVAAPRALEAKITLAVGEPGGRGLSRSVTLPILPAQPVLAIRKNFGGDLAENATATFDIVMAAPDGRRLAQNGVTWTLSKVERTYQWYRADGRWSFEPVKSSRRVADGRVAATADAPARIAVPVGFGQYRLEASVAGQPQAAASVSFTVGWGGSETADVPDLLNLTLDKPAYAAGERLRARLAPKFAGTATLAIVSDRVHEIRDVTVSEGGTSVDIPVKPEWGAGAYLVATAYRPLDQAAKRMPGRALGVAWFSVDKEKRGLSVSIEAPEKVRPRGTLTVPVKLAGLAPGEEARVTLAAVDVGILNLTRYEAPNPFAYFFGQKALGPEIRDLWGYLIDGMQGTLGAIRSGGDGGATELADAPPTQAPLALYSGVVTVGPDGTAKIPLELPAFNGTARLMATAWTKARVGQAQADVIVRDPVVLTGTLPRFLNVGDRSRFFVALDNVEGAAGDYTVDLDLTGPVVVAGEAVRSTMRLEAGAKGQLVIPITAAGPGTARLDLSLTGPGIQGSAGQSFALGINPGTGALVRRNVRPLEPGAGLDLTPDLLADILPGTGAVSVSANRLGGIDVAALLQSLDRYPYGCSEQIVSRAMPLLYVNALAAGEKLGLDGGLDERIRGAIERVLARQDSSGAFGAWSTENAGDTWLTAYATDFLTRARERGFAVPQTAFNSALDRLRNTVANTTNVENGGMDLAYAAYVLARNGRPVMGDLRYLADTKLADFATPLGRGQLAAALALLGDRGRAQKGFEAAVQALQAERDKGAYRADYGSRLRDGAALLALSGEAGFTQATLQPVAAVLGQERAEGRATSTQENAWMVLAAQSLAKESDSLALTIDGKTETGPLSRLYRTPALEARPVRIVNAGREAVPVAIGIQGNPIAPEPAASHGFTVERAFYRLDGSPVDLGKPLRQNDRLVVVLKVTEAKASAGRLLLVDRLPAGLEIDNPKLLDADALSGLSFAKSDVAPAHTEFRDDRFVAAYDRTPEQSAFFSAAYTVRVVSPGTYVHPGASVEDMYRPERFGRTAFGSVEVMSAK
>NZ_CP047608.1|WP_133087878.1|1410455_1410914_-|cytochrome-c-type-biogenesis-protein-CcmH
MTRLRSPLFALTLSLFALPALAVQPDEVLKDPAMEARARQISEGLRCLVCQNQSIDDSDAPLAKDLRVLVRERLKEGDSNGQVVDYVVARYGEFVLLRPVFGWHTLLLWLSPLLAVGLGAFGIWRLSRRRTPRADDLSAAEKAEVEALLKRP
>NZ_CP047608.1|WP_166058860.1|1410910_1412911_-|heme-lyase-CcmF/NrfE-family-subunit
MIVEIGHYALALALALSLVQAVMPAWAARSGDAALREVAGPAALGTFACILFAFCALTYAHVTSDFSVQNVVENSHTAKPLIYKISGVWGNHEGSMLLWVLILALFGAWVATAKNSVPPVLRTNTLMVQASVTFVFVLFIIMTSNPFARVAPAPLEGNDLNPLLQDLGLAIHPPLLYLGYVGFSVTFAFAVAALIEGRIDAVWARAVRPWALIAWSFLTLGIAMGSYWAYYELGWGGWWFWDPVENASLMPWIAGTALLHSIVVMEKRDALKVWTVLLAILTFSLSLVGTFIVRSGLLTSVHSFASDPSRGVFILAILALFIGGALSLFAWRAPSLRQGGLFAPISREGALVMNNLFLVAACATVFVGTLYPLLLEMLTGEKISVGPPFFNWTFIPLALPLLVIVPFGQALAWKRGDAAAAAQRLLAAFAVALVVGLAAAAWTWGGPVMAPVGLGFGAYLIIGSALEIWARARGYGQNRTHDLGTTWRRAIGLPRSAWGTALAHAGVGVVVLGIAGQGWATEGLATIRPGGQVASGPYVATLDRVGPTKGANYEETTAFLTLRNRAGDYVGTTETGKRFYPSRRMTVTESGLKTVGFSQIYASLGEVMPDGSIGMRLYYKPLVLLIWIGSLIMAAGGGLSLTDRRMRVGAPVKARAKLPPSAVPAE
>NZ_CP047608.1|WP_133087880.1|1412969_1413491_-|cytochrome-c-maturation-protein-CcmE
MTRKSRRLILIAACGAVLALALGLILSAMSGSIVFFRSPAEVAAQGVAPGTRFRLGGLVTEGSVKRGPDQNVEFSVTDTNATVPVQYRGLLPDLFREGQGIVAEGKLDAGGVFRADTVLAKHDENYMPREVADALKAQGRWQEGGGKESPKDAAKDAAKPASADAALGQRSER
>NZ_CP047608.1|WP_166058861.1|1413651_1415202_-|c-type-cytochrome-biogenesis-protein-CcmI
MTAIWFILAAMTGAAVFALLWPMSRRRRHSAAPEAEGSDGLATETGFYEDQLAEIERDLGRGLIAPAEAEAARAEAARRLLRASREERAEASGAAPIAEPHLRQRRAASAFALSTIPLVALVVYGLYGSPNLPSQTDADRKATRAGAQDLMTAIGQIEARLANHPDDARGWSVLGPVYMRLGRFDDAARAYAALARLKGEDAQALSDWGEALVAAADGTVSPEARKVLGRALAADPKAAKPQFYLARGDEQSGDVAGAVRRLEAMAASAPADAPWLPAVRDNLARLKGETTAAPKADGSGEGAKDGPMSEAPVAGPGSNIQALPPSERIDAIRGMVEGLERRLAKQGGSADEWLRLVRSHAVLGERDKALDALERARKAFRDDPEALARLDTQAHELGLPGAGAPPKPEAGEKTGDRSGEKTAEPDAAAAAIKAMPPAEREAAIRGMVASLDRRLAAKGGSADEWMRLVRSYGVLGDRAAAAQALDRAKMALAANSIAVERLDALGKELGLNPAQP
>NZ_CP047608.1|WP_133087882.1|1415349_1416765_-|sensor-histidine-kinase
MTDRLAWLPLRRRSIAVRLAVSSFLSSTAILVIAAFILTTLYRENTERAFDSRLLVFANNLATDLVSPSEPETRSFSLGDPRFDLPLSGWYWQVGRADAKPRDLRTSRSLVGVPLKGPDQAGTATIGQIRQGYGRGQDDRTLRIVERDVDVGADGRYTVRVAGPADEIVNDVERFRFSLFMTFGLLGFSLAATALLQIRFGLAPLRKLRTALGSIRRGEADRIDGEYPRDIAPLAGEINLLIETNREILERARTQVGNLAHALKTPLSIIVNEAGGSDAPPELSEKIREQAAVMRDQVNYHLDRARAAALAGTLGTSTEVEPALAGLVRTFGKIYRDKDIAYEVHVPPGLRFRGEKQDFEEMIGNLVDNASKWATGRVSISAAPTGEHDYPHLLVAVEDDGPGLPEEDRAAVLKRGRRLDETKPGSGLGLSIVADLAALYRGRFRLEAAALGGLRAVIEVPGDAPAGAGQR
>NZ_CP047608.1|WP_133087883.1|1416857_1417094_+|transcription-factor
MALHIRDAETDRLVRLLAEQKGIPLTEAIKVAVRNELEREAQRPALWERLKPLHERVAARPSTGLEADKAFFDGLNDE
>NZ_CP047608.1|WP_166058862.1|1417093_1417492_+|type-II-toxin-antitoxin-system-VapC-family-toxin
MFVDASALIAIVTEEPEGRALAGRLERTGAAITSPIAVYEATLGIARKKQGGLKAARADIEMLLDLAQIRLVPITTDDAGRALDAFARYGKGTGHPARLNMGDCFAYAVARNHGVPLLYKGEDFALTDLSGQ
>NZ_CP047608.1|WP_012453322.1|1417496_1418174_-|response-regulator-transcription-factor
MRLLVVEDDRDINRQVVAALEEAGYVADKAFDGEEGGYLGENEPYDAIILDMGLPKADGVTVLQNWRRAGVKTPVIILTARDRWSDKVDGFDAGADDYVTKPFHMEELMARVRAILRRAAGHASSQISCGPVTLDTRSGRVFVDGAPIKLTSHEYRLLSYLMHHTGRVVSRAELTEHLYDQDFDRDSNTIEVFVGRLRKKLAVDLIQTVRGLGYLIDPNQPPGRG
>NZ_CP047608.1|WP_166058863.1|1418223_1418595_-|PepSY-domain-containing-protein
MRQALALLIVVSTAAVLAAGAVGPLAEETGALSPAPARQGPLNRGDDCLSPADLREAVAEKRVVPPIAAIRAARQIIPRAEIQRASLCRHEAGLVYLLTALRRDGQFMHVMVDAQSGQVSGQW
>NZ_CP047608.1|WP_166058864.1|1418791_1419019_-|hypothetical-protein
MSAPASPAGPARPAWRSSRRSRSRAAVGRLAAARHGFERSLIALRRAALDAVDSGDLAILALRVCGERRLRAGAE

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Crispr_ID: NZ_CP047608_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047608_3

2098669-2098758

Orphan

Consensus_repeat	Method
CCGGCTTTCGGAAAAAGACGATGCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047608_3

>merge|NZ_CP047608|3|2098669-2098758|CRISPRCasFinder
CCGGCTTTCGGAAAAAGACGATGCACAAACAAGAGGATAGACCATCGTCCCGAAAGGCGGCCGCCGGCTTTCGCGAAAAAGACGATGCAC

>NZ_CP047608|3|3|2098669-2098758|CRISPRCasFinder
CCGGCTTTCGGAAAAAGACGATGCAC	AAACAAGAGGATAGACCATCGTCCCGAAAGGCGGCCGC
CGGCTTTCGCGAAAAAGACGATGCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047608.1\|WP_166059228.1\|2096370_2097447_-\|quinone-dependent-dihydroorotate-dehydrogenase	unknown	unknown	gnl\|CDD\|235388
NZ_CP047608.1\|WP_133089410.1\|2105952_2106156_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047608.1\|WP_166059236.1\|2107749_2109576_+\|DUF3369-domain-containing-protein	unknown	unknown	gnl\|CDD\|378737
NZ_CP047608.1\|WP_017485459.1\|2099251_2099467_-\|DUF3126-family-protein	unknown	unknown	gnl\|CDD\|371468
NZ_CP047608.1\|WP_166059226.1\|2091436_2093404_+\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|226434
NZ_CP047608.1\|WP_166059227.1\|2093721_2096040_-\|FdhF/YdeP-family-oxidoreductase	unknown	unknown	gnl\|CDD\|273765
NZ_CP047608.1\|WP_166059234.1\|2106167_2106407_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047608.1\|WP_166059235.1\|2106581_2107337_-\|response-regulator	unknown	unknown	gnl\|CDD\|181883
NZ_CP047608.1\|WP_133089419.1\|2084698_2085955_+\|outer-membrane-beta-barrel-protein	unknown	unknown	gnl\|CDD\|369446
NZ_CP047608.1\|WP_166059224.1\|2086164_2088777_+\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|224588
NZ_CP047608.1\|WP_166059230.1\|2098007_2098640_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225484
NZ_CP047608.1\|WP_166059232.1\|2103539_2105831_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP047608.1\|WP_108940032.1\|2093422_2093725_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047608.1\|WP_166059231.1\|2101917_2103543_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173858
NZ_CP047608.1\|WP_108942901.1\|2100726_2101626_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|236167
NZ_CP047608.1\|WP_108940038.1\|2099606_2100467_-\|serine-O-acetyltransferase	unknown	unknown	gnl\|CDD\|182987
NZ_CP047608.1\|WP_166059229.1\|2097443_2097794_-\|DUF952-domain-containing-protein	unknown	unknown	gnl\|CDD\|226033
NZ_CP047608.1\|WP_108940037.1\|2098768_2099098_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047608.1\|WP_133089420.1\|2082860_2084357_+\|ammonium-transporter	unknown	unknown	gnl\|CDD\|223083
NZ_CP047608.1\|WP_166059225.1\|2088923_2091059_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657

Protein	Function_ID	Function_description	E-value
NZ_CP047608.1\|WP_166059228.1\|2096370_2097447_-\|quinone-dependent-dihydroorotate-dehydrogenase	gnl\|CDD\|235388	PRK05286, PRK05286, quinone-dependent dihydroorotate dehydrogenase.	2.3633e-174
NZ_CP047608.1\|WP_017485459.1\|2099251_2099467_-\|DUF3126-family-protein	gnl\|CDD\|371468	pfam11324, DUF3126, Protein of unknown function (DUF3126). This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.	3.54744e-24
NZ_CP047608.1\|WP_166059226.1\|2091436_2093404_+\|PAS-domain-S-box-protein	gnl\|CDD\|226434	COG3920, COG3920, Signal transduction histidine kinase [Signal transduction mechanisms].	1.06705e-32
NZ_CP047608.1\|WP_166059227.1\|2093721_2096040_-\|FdhF/YdeP-family-oxidoreductase	gnl\|CDD\|273765	TIGR01701, Hypothetical_protein_Rv2900c/MT2968/Mb2924c., oxidoreductase alpha (molybdopterin) subunit. This model represents a well-defined clade of oxidoreductase alpha subunits most closely related to a group of formate dehydrogenases including the E. coli FdhH protein (TIGR01591). These alpha subunits contain a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulfur clusters and cytochromes. The particular subunits with which this enzyme interacts and the substrate which is reduced is unknown at this time. In Ralstonia, the gene is associated with the cbb operon, but is not essential for CO2 fixation.	0
NZ_CP047608.1\|WP_166059235.1\|2106581_2107337_-\|response-regulator	gnl\|CDD\|181883	PRK09468, ompR, osmolarity response regulator; Provisional.	1.49879e-75
NZ_CP047608.1\|WP_133089419.1\|2084698_2085955_+\|outer-membrane-beta-barrel-protein	gnl\|CDD\|369446	pfam07642, BBP2, Putative beta-barrel porin-2, OmpL-like. bbp2. BBP2 is a family of putative porin proteins that are likely to be outer membrane beta barrel proteins porins.	2.81894e-53
NZ_CP047608.1\|WP_166059224.1\|2086164_2088777_+\|DNA-translocase-FtsK	gnl\|CDD\|224588	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning].	0
NZ_CP047608.1\|WP_166059230.1\|2098007_2098640_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225484	COG2932, COG2932, Predicted transcriptional regulator [Transcription].	2.36137e-54
NZ_CP047608.1\|WP_166059232.1\|2103539_2105831_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.05062e-35
NZ_CP047608.1\|WP_166059236.1\|2107749_2109576_+\|DUF3369-domain-containing-protein	gnl\|CDD\|378737	pfam11849, DUF3369, Domain of unknown function (DUF3369). This domain is functionally uncharacterized. This domain is found in bacteria. This presumed domain is about 170 amino acids in length. The domain appears to be related to the GAF domain.	5.00102e-55
NZ_CP047608.1\|WP_166059231.1\|2101917_2103543_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173858	cd08493, PBP2_DppA_like, The substrate-binding component of an ABC-type dipeptide import system contains the type 2 periplasmic binding fold. This family represents the substrate-binding domain of an ATP-binding cassette (ABC)-type dipeptide import system. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NZ_CP047608.1\|WP_108942901.1\|2100726_2101626_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|236167	PRK08154, PRK08154, anaerobic benzoate catabolism transcriptional regulator; Reviewed.	2.64473e-143
NZ_CP047608.1\|WP_108940038.1\|2099606_2100467_-\|serine-O-acetyltransferase	gnl\|CDD\|182987	PRK11132, cysE, serine acetyltransferase; Provisional.	1.84176e-122
NZ_CP047608.1\|WP_166059229.1\|2097443_2097794_-\|DUF952-domain-containing-protein	gnl\|CDD\|226033	COG3502, COG3502, Uncharacterized protein conserved in bacteria [Function unknown].	3.22967e-51
NZ_CP047608.1\|WP_133089420.1\|2082860_2084357_+\|ammonium-transporter	gnl\|CDD\|223083	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism].	1.26306e-163
NZ_CP047608.1\|WP_166059225.1\|2088923_2091059_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	1.53753e-32

>NZ_CP047608.1|WP_166059230.1|2098007_2098640_+|helix-turn-helix-transcriptional-regulator
MLSHEQIWTAIDRLAERHGFSASGLARRAGLDATSFNRSKRVGPDGRKRWPSTESIAKVLAATGASLDDFLHLVDSGQAPARTMVPLVGLTQAGSGRLFTEEGIPTGGPGWDEIEFPDLGDDHAFALEVQGDSMLPLYRDGDVLIVAPNAGIRKGDRIVARLTNGEVLAKELRRRTARTIELTSLNPDHEDRMVPLADVAWMARVMWVRQ
>NZ_CP047608.1|WP_166059229.1|2097443_2097794_-|DUF952-domain-containing-protein
MALVYKICPRDLWRDAEALGRFTGAPVDHADGFIHFSTAGQVAETAARHFAGQDDLLLVAVEDDDLGPALRFEPSRGGALFPHLYGDLPLSAVRSVTALPLGPEGRHVFPAEIVPA
>NZ_CP047608.1|WP_166059228.1|2096370_2097447_-|quinone-dependent-dihydroorotate-dehydrogenase
MIDALFPLARPLLHGLDAETAHDLTIRGLSLLPPRRPPADDAALAVEVFGRRFPNPVGLAAGFDKGARVADALLGLGFGFVEVGGVVPRPQPGNPRPRVFRLPGDRAVINRFGLNSEGLDAVADRLKAREGREGIVGVNIGANKESADRLADYVACTARLAPHVAFITVNVSSPNTPGLRDLQGEAFLDDLLARVVAARDESGSSAAVLLKIAPDLALEGLDAMTATALRRGIQGLVVSNTTIARPASLTESTLANETGGLSGRPLFGPATRLLAQTYLRVGDRIPLVGVGGIDSAEAAWTKIRAGARLVQLYSALVYEGPGLVGTIKRGLSQRLRAEGLTSLEPVVGRDAAALAQSA
>NZ_CP047608.1|WP_166059227.1|2093721_2096040_-|FdhF/YdeP-family-oxidoreductase
MDRSQGLPKRSSAAGGWGALKSCGKFLLGSRAPLSGARALLSANQPDGFDCPGCAWGDPAHGSSFEFCENGVKAVSWEATDKRVTPRFFAKHPVTELRGWTDYALESEGRLTHPMRYDAQSDTYRPVEWEEAFADIGATLRGLDHPDRVEFYTSGRASNEAAYLYQLFARAYGTNNFPDCSNMCHEASGIALTQAIGIGKGTVLLEDFERADAIFVVGQNPGTNHPRMLGDLRRAAERGARVVVLNPVRERGLERFADPQNSVEMLRGASRPIASHYYQPKPGGDMAAFRGIAKIVFARDTAALAAGKPSLLDHAFIAAHTSAFDEYRAAVEATAWDAILDQSGLTREDIETAADVYLGADKVIATWAMGVTQHRHSVATIREIANLLFLRGHIGRPGAGLCPVRGHSNVQGDRTVGINEKPPAALLEALDRAFGLTMPRKHGHNVLGAIGAMLDGSSKAFIGLGGNFVRATPDTRLVEKALAGCELTVHIATKLNHSHLVPGRVAYLLPCLGRTEIDRNSRGKVQIVTVEDSMSMVHGSGGINKPASPHLRSEIGIIAGMAAATVGSERIDWAALADDYDLIRDLIERTIPGFAGFNTRVRRPRGFMLRNLAAERVFETATGRAGFSSGPLPVATEHQRASRQGDTFVLQTFRSHDQYNTTIYGLDDRYRGVYGERRVVFAHPDDLAELKARAGERVDLVCVHAEDGIERVAEDFRLVPFDMPRGSLAGYYPELNVLVPLSAFGEFSDTPTSKSVLVQVRARAANDVGKAA
>NZ_CP047608.1|WP_108940032.1|2093422_2093725_-|hypothetical-protein
MSEPAADAETFLAATDTIAALRPELSLLEAGILAGLHLGLAADSRSFARIFGVEHALVLRAVEGLSGESLLTVTARDGRTQRTRYAASATGSAMLTALAA
>NZ_CP047608.1|WP_166059226.1|2091436_2093404_+|PAS-domain-S-box-protein
MDRSGSPPVQPVRGEMAGRIRAYDWTSTTLGAAETWPPSLKATISLLLGCGFPMIALWGPNLIQVYNDGYRDLMGLKHPAGLGQPTRACWPEVWHINAPIYERVWAGETLTFEDALYPLTRSGRLEDAWFTLTYSPLRDDSGAIAGILVILVETTSRVLADRALRESEARFRAELERQVQERTAELQASRDLLKATMDSSMDMIQVFKAVRDASGEIVDFQWLLNNHTSESRYGEVSGQSLLERNPAVVQEGIFDTFKRVIETGQPATAERRYVHEQFDGWFFQCAVKLGDGVATTTKEISAWKAAQEEVLRLRDEIAQAALRESEDRFRTLASLIPVLLWRSDESGQQNALNEAWLAYTGQTLPQSQDGGWLEAIHPDDRDASQEAFRVGREQQRLIEVQPRIRRHDGEYRWFLVRQAPIVDAEGHVTQWIGAAMDIHELHDLQERQAVLVAELQHRTRNLLGVVRSIAHQTMVQTGPTERFREQFNDRLAALSRVQGLLSRSEQEPITLRTLIRTELEALGAGDFADRIHVAGPPVRLRKASVQTLALAMHELATNARKYGALTTEHGRLSVTWRADRNEQGDGNLLIEWIEEGISRPRETYGPTRRGYGRELIERAMPYALNAKTRYELGETRLLCAIELPLGERSGEMSTA
>NZ_CP047608.1|WP_166059225.1|2088923_2091059_+|TonB-dependent-receptor
MSRKRYGLGRWAGIGIAGLVVSPLQAEEVSLDEISVTSDRKTRREGAASGPTPNPAGVLPVVADRFATVSVVSGADLARSQPTSLGEALFDKPGLSATTFAPGSASRPIIRGLDNHRVRILENGTGVQDMSDLGEDHAVPINPLINERIEVIRGPAGLRYGSQAVGGVVSVENNRIPTSIPPGGIAGRVTTGYSAVDNGRNAAATVDAGSGNVAVHADAFKSAADDYNTPLGIQRNSFNRSQGGAFGTSYLFDRGFVGLSFSHFDSVYGIPGLSSAAQRTRLDPVQDKLQARGEYRPLDGPFAAIRFWAGGSNYRHNEFGIDANGVEGIEAVFKNRAAEGRIEFDHAPVELPFGTLTGQFGVQADRRKLRISGAEGGLLRPTDTRVQAAYLFEELAIGGGLRFQAAGRIEGNRVAGTQALFPLDFLPDGPGDEPLESRRIRRFAPKSASFGALQDLPYGFVASLTGSYVERAPTSPELFSRGPHEASATFEIGDPNLKLERARTVEVAIRRAEGPFRFDATGYVTRYTGFVYKRLTGFTCGDTFGSCGIGGGDLRQVAYSQAGATFAGAEIASQIDLVPVGDGFAGISAQYDFVRAQFDDGSFVPRIPPHRVGGGVFLRADGWFAQVSLLHAFAQAQTGVLETPTPGYNDLKAEIAYSRPLDPAVHGLSEVTLGLRGTNLLDDVIRNAASFRKDEVVLPGRNVRLFLTARF
>NZ_CP047608.1|WP_166059224.1|2086164_2088777_+|DNA-translocase-FtsK
MRSLRRSASPYDTFVDSLRPFLAKRLTECGGLILFTGAVALTVALATWSIDDPSLNHATDQRAHNVLGRPGAVVADLAMQLLGLGSIMLALPPVLWGMRLMRERDLPHGGVRMALWFVGVLSASAVASAVPATARWPLPTGMGGVAGDALLAGTRMLVGPLAHFAGFLFAAIAILSLTAACRVTKPDFEEDEEGPYGAPRPAPRPGRAAAHEERHDSDEPSLGILSLGALAQAVMRGRASLRTRLESWQAPAEEGEGLAYAGASPALAARRAFADPEEAPWAPHAREHADVSGRREPQFEPQGDDADDGPVRAVPPRPAPVAHEAEAAALKPSTRVSRPLPQAPAARPRPLEPRPEAGEYRLPALELLARPREAAPGSEVSAEALEQNATMLEATLQDFGVRGDILAVRPGPVVTLYELEPAPGTKSSRVIALADDIARSMSAVSARVAVVPGRNAIGIELPNAKRETVFLRELLASEDFVESKHKLALCLGKNIGGEPIIADLARMPHLLVAGTTGSGKSVAINTMILSLLYRLKPEECRLIMVDPKMLELSVYDGIPHLLSPVVTDPKKAVIALKWAVREMEERYKKMSKVGVRNIDGFNARLEEARARGETLTRTVQTGFDRTTGEAVYEDEVMDLNPLPYIVIVVDEMADLMMVAGKDIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPTRISFQVTSKIDSRTILGEMGAEQLLGQGDMLFMAGGGRTTRVHGPFCSDSEVESVVAHLKRQGRPSYLEAVTAEEGEIPAGAAPSEDGPVFDGGQFGGGEGGDLYEQAVAVVLRDKKASTSYIQRRLQIGYNRAASLMERMETEGLVGPANHAGKREILVEAEPQDY
>NZ_CP047608.1|WP_133089419.1|2084698_2085955_+|outer-membrane-beta-barrel-protein
MTIKTMFLAAGAALTTLSATALPVLAADMPAAASAPVVVEEHCKAAISTPTFGGLIKANPNPACFVTGLGDIYVGGAITGFAYSQTNAFGILSPSVEQDRYGRVDFTNLQGWIQKADGPLQFYVHAGLYSIPALGLPLYSSFEQTQSLFGPVPVAFGKWQINDEWSIQAGRMFTNIGSELLFSYQNLNISRGLVFNQENFINQGVQVNYANGPFAAAVSVNDGFYSGELNWVTGFATYKLDDSNTIGINGGTHFSDFDSSTRSPRFQFATINSLQNSSIISVNYTYANGPWIIAPYFQYTTVDRKDNYFSPIIGGETWGGALLAGYAFNENFGLAGRVEYIAQSGTRFDTLSATSLLYGPGSSAFSFTITPTFTWDRYFVRGEFATVQAYDVTPGFGFGRDGTKRSQERYLVETGFTF
>NZ_CP047608.1|WP_133089420.1|2082860_2084357_+|ammonium-transporter
MKPRNLLALGLGGAALGLLLVEPSLAQAPTVEPAATAAAPVPNKGDTAWMLLSAILVLLMTVPGLALFYGGLVRTKNMLSVLTQVFAIASIVCLLWVTYGYSLAFTNGGGLNDFVGGFSKAFLKGVDPNSVAATFSNGVVIPEYVYICFQMTFAMITPGLIVGAFAERMKFSALVVFTILWVTLIYFPMAHMVWYWGGPDVFADAARKLAAAGGEANAAAKAEYDAVLGDAGMLFKWGALDFAGGTVVHINAGIAGLVGCLMLGKRIGYGRDLLAPHSLTMTTIGASLLWVGWFGFNAGSNLEANGAAGLAMINTFVATAAAAVSWLFVEWAAKGRPSLLGMLSGAIAGLVAVTPAAGFAGPMGSIVLGLAAGAVCFVMCSTVKNALGYDDSLDVFGVHCVGGILGAIATGILVSPDLGGAGIPDYTTKPGELTVGAYDMVAQVITQAKAVGFTILWSGIGSAILYKLVDLTIGLRVTQEEEREGLDIADHGERAYNY
>NZ_CP047608.1|WP_108940037.1|2098768_2099098_-|hypothetical-protein
MTLSPSSLEAIQALIVGLALAGLLASAFEYATNRRASFRLLEAGGVTALVALPMIAVVAPFIILRNTLRGRRFEHRPIPFVMIATMIACGWSLLSGQIALGMAHRLAGL
>NZ_CP047608.1|WP_017485459.1|2099251_2099467_-|DUF3126-family-protein
MTKTEVAKLQDYLRRKFANANIRVVAMKTGDSAEVFIGDESIGVLADDKEDGDDSFTFRMAILDIDLEEDA
>NZ_CP047608.1|WP_108940038.1|2099606_2100467_-|serine-O-acetyltransferase
MSASPSLSPASGREGIAGIVDPLWTRVRTEAETVVRDEPQLASFFVATILNHPSLEAAVAHRVATRLGHASLSTELVAHGFHEALQDDAYIGQSMRADILAVMDRDPATTRAIEPLLYFKGFHAIQAHRLAHWYWGQGRRDLALYLQSRSSEVFQTDIHPAARIGRGVFFDHATGLVVGSTAVIEDDVSILHAVTLGGTGKHGGDRHPKIRRGVMIGAGAKILGNIEVGACARVAAGSVVLRSVPPHTTVVGVPARVVGAAGCAEPARSMDQLVAMSEFVDIAGGI
>NZ_CP047608.1|WP_108942901.1|2100726_2101626_-|helix-turn-helix-transcriptional-regulator
MTDPAEQEASFLNELGRRVRHARTVRGLSRKLLSQASGLSERYIAQLESGQGNVSIILLRRVANAMGMRLDDLVSSQEASPDWRVIRDLLEQANPDQIALAKAALAGSTGADAQTVRRRVALVGLRGAGKSTLGRMAAAHLGWRFVELNTEIERENGLSVREIFAIYGQEGYRRLEQKALRGLAEQPGPMVLATGGSIVAEPLTYDLLLSSFYTIWLQARPEEHLQRVRDQGHVEGKGDPTSVLEDLRAVLLSREPLYARASATVDTSDVPVETMAARLIEVIEDRFSGHDNGGKRPIA
>NZ_CP047608.1|WP_166059231.1|2101917_2103543_-|ABC-transporter-substrate-binding-protein
MRRRNRSAGLVAALAAAAALLTGASAGQARTLVYCSEGNPESLDPGLVTTTTAMSATWQMFNSLVEFAPGTTDLRPALAESWQVSDEGRTYDFTLRAGVRFHAQPGFTPSRALNADDVLFSFLRQWKPDHPYHGVGGDFAYFRDLGLAGLIEGIERLDERRIRFRLKEPDATFLPNLAQAFGAILSAEYAEHLARRGTPEALARAPVGTGPFRFVDYRPDVALRYRRFPDYWRRPAEAGAGAVDALVFSITPNTAVRLTKLKAGECHVMAFPGTADLDAVRADPDLTLVSGEELNVAYLALNTARPPMSDPRVRRAVSLAIDRRAIVEAVYGPAGTVAHNPLPPTSWAFHRDLPETVFDREAAARLLAEAGFAEGFETDLWFLPVSRPYNPNGRRVADLIRADLARIGIRARLTTRDWTAYRAALYGGEPTMMLYGWTSDNGDPDNFMNVLLGCRAAAPGGANLARWCDPAYDAAVQAARRTDDRGIRTRLYRDAQARFHEAAPWVPLAHTVVHMAVRRTVNGFRADPLGRTLFEGVTLAE
>NZ_CP047608.1|WP_166059232.1|2103539_2105831_-|HAMP-domain-containing-histidine-kinase
MRVGRKIALVGGVPILVAAAIAGAGWFLLAQGERARAGALLAARVYHDLIQARSVRDDFVAARADERDAIATRFFDLTGRAGSGLETLQGQARTRRQAERAAAARQSLDRYVARMREFSAVARENDGLIAEMGRRASRLTDLAEQARQRQQASNVDLAWTLTGKVNRLRATRDAVTGLNAVLAAAWQLALGRERGASPETERAERTRLVHAGRDVAATLRATSREIEAAEAERRTALDAALDSAAGDRLIEWGERLLKIVTSEQRTLDDEVAQLLAYAGEANATGQATQNIGITTLKLGQRTAEALVRRDAEAVSAMLGEGERLSASAAALPISPLIQSEMIEAIDGWRARLATTVDGLKRQNAMIAEMDGLAAGLSEATRALNDDALEDADRFGTFLGQLLLAGAAVGLLLGALVALAVARSILVPLRQLQGDMIALAADPKAEGLSGTQRTDELGDIARATNFFVTEIGRRERALRRAKDQADHALHDLHQAQDDLIRAEKLASLGQLVAGVAHEINTPLGIALTTATLVRDETRTFQGLVTAGTLSRSRLTHFVDRVGEGTQLLCANLTRAADLVHGFKQVAVDRASDERRRFDLDVWLGELLASLQPMLRKGGHRIERDVPSGIVVDTYPGVLAQIVTNLVANAVVHGFAAARRPGTITVHVSNTGSLVRLEVSDDGSGIAPEHLGRIFDPFFTTARSRGSTGLGMHIVHNLVTAKLQGRIAVESEPGRGTRVRLEFPRAPGDAERPGAARRPAGVQAP
>NZ_CP047608.1|WP_133089410.1|2105952_2106156_-|hypothetical-protein
MPHFSKEGLEASPEALAKLREILHGRQQGGRDGRTVPSTPTKEGRFGTSGGRGAPVRRRRRTDLAGV
>NZ_CP047608.1|WP_166059234.1|2106167_2106407_-|hypothetical-protein
MIAVSAVLSAGLVAGLAATDAAARPKPAVTAAPIGAPALKAPESRPSTTVSPCTAAWPYQSAACAADGRKVRVIALTGR
>NZ_CP047608.1|WP_166059235.1|2106581_2107337_-|response-regulator
MTPTGPHIAVVDDEADARAMVGEYLRLHGFDVALCEGGRALRAHLQIRTPDLIVLDLNMPEEDGLSIVRDLKARSPIPIIMLTATASPIDRVVGLELGADDYLPKPCELRELVARVRSVLRRAQGTPPAPAPASSPASAPAASPETPSRTIRFGTKWLELDALRLRDDAGMEQPLTRSEFDLLKAFADHPKRALSRERLLDLADARDPDAFDRAIDVRINRIRKKVEPDPANPRYIRTVRGLGYIFRPEGD
>NZ_CP047608.1|WP_166059236.1|2107749_2109576_+|DUF3369-domain-containing-protein
MRVASKSAKGLHAMNDATDDDWLELIPDEVAETPARAGAWTIAVIDDDPAVHEGTRYALAGYSLDGRGLDILSAHSAQEARALLAERRDVAIVLLDVVMETDDAGLRLVDYIRRELREETVRIILRTGQPGQAPERRVIVDYDINDYKAKTELTADKLFTSLTAALRAYQQLRRLDETRRGLEIIIDAAPMLLDHKSMQRLAEGVLTQVASLLNVDCAGILVLREDERDQKREGGFSVLAGSGLYGGYVGRDPGWPLDPGIQPLVEQAFAARRHSFGDGLSTLYVQTASGSEIVALIDTDRPLSDTDRALITLLAGRLSVAFDNVILYERLQRANVTLEQRVVERTAELIRANRRLDMQRSDLRRANSLKTEILGTIAHDLKNPLSVILGRSEMLTDLIGLDSGEPSGSEQARTAMRTQVDHIRTSATRLIDMIDSLMADAMNDALDITLRREPVDLAGLAREVCEANRPLADSKGQSLTLDLAAPLHLCGDAERLREAFDNLVSNAIKYSYPGGAITVSVREEGGDYVCAVADQGPGLSPEDAGRLFGRYQRLSAKPTGGEGSTGLGLSIVKRIAELHGGRAEAFSDGPGRGAVFSMRFPKETVGLV

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Crispr_ID: NZ_CP047608_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047608_4

4809526-4809615

Orphan

Consensus_repeat	Method
GAGCATCGTCCCGAAAGGTGGTCGCCGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047608_4

>merge|NZ_CP047608|4|4809526-4809615|CRISPRCasFinder
GAGCATCGTCCCGAAAGGTGGTCGCCGGCTTTCGGAGAAAGACGATGCAAAGACAAGAGGGGAGCATCGTCCCGAAAGGTGGTCGGCCGG

>NZ_CP047608|4|4|4809526-4809615|CRISPRCasFinder
GAGCATCGTCCCGAAAGGTGGTCGCCGGC	TTTCGGAGAAAGACGATGCAAAGACAAGAGGG
GAGCATCGTCCCGAAAGGTGGTCGGCCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047608.1\|WP_166060906.1\|4819420_4820857_-\|cardiolipin-synthase	unknown	unknown	gnl\|CDD\|234967
NZ_CP047608.1\|WP_166061545.1\|4803886_4805923_-\|response-regulator	unknown	unknown	gnl\|CDD\|236848
NZ_CP047608.1\|WP_166060897.1\|4802070_4803531_-\|sodium:solute-symporter	unknown	unknown	gnl\|CDD\|223664
NZ_CP047608.1\|WP_166060905.1\|4817773_4818568_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047608.1\|WP_166060898.1\|4803527_4803731_-\|DUF3311-domain-containing-protein	unknown	unknown	gnl\|CDD\|371707
NZ_CP047608.1\|WP_166060899.1\|4806455_4806905_-\|tellurite-resistance-TerB-family-protein	unknown	unknown	gnl\|CDD\|143580
NZ_CP047608.1\|WP_166061546.1\|4809636_4812150_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|223715
NZ_CP047608.1\|WP_133089556.1\|4818750_4819527_+\|endonuclease/exonuclease/phosphatase-family-protein	unknown	unknown	gnl\|CDD\|377028
NZ_CP047608.1\|WP_166060903.1\|4815998_4816610_-\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|380315
NZ_CP047608.1\|WP_166060908.1\|4824204_4827639_+\|double-strand-break-repair-helicase-AddA	unknown	unknown	gnl\|CDD\|274298
NZ_CP047608.1\|WP_166061547.1\|4816778_4817567_+\|enoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|181249
NZ_CP047608.1\|WP_166060900.1\|4806952_4807699_-\|nucleotidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|133044
NZ_CP047608.1\|WP_166060895.1\|4798704_4799265_+\|helix-hairpin-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378965
NZ_CP047608.1\|WP_108942122.1\|4801163_4802048_+\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|224327
NZ_CP047608.1\|WP_166060902.1\|4814216_4815845_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|341275
NZ_CP047608.1\|WP_166060907.1\|4821070_4824208_+\|double-strand-break-repair-protein-AddB	unknown	unknown	gnl\|CDD\|274300
NZ_CP047608.1\|WP_108942130.1\|4812642_4814049_-\|adenosylhomocysteinase	unknown	unknown	gnl\|CDD\|377487
NZ_CP047608.1\|WP_108942119.1\|4799468_4799684_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047608.1\|WP_166060896.1\|4799680_4800184_+\|DUF3016-domain-containing-protein	unknown	unknown	gnl\|CDD\|378666
NZ_CP047608.1\|WP_166060901.1\|4807732_4809367_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	unknown	unknown	gnl\|CDD\|225719

Protein	Function_ID	Function_description	E-value
NZ_CP047608.1\|WP_166060906.1\|4819420_4820857_-\|cardiolipin-synthase	gnl\|CDD\|234967	PRK01642, cls, cardiolipin synthetase; Reviewed.	1.78133e-118
NZ_CP047608.1\|WP_166061545.1\|4803886_4805923_-\|response-regulator	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	1.1364e-93
NZ_CP047608.1\|WP_166060897.1\|4802070_4803531_-\|sodium:solute-symporter	gnl\|CDD\|223664	COG0591, PutP, Na+/proline symporter [Amino acid transport and metabolism / General function prediction only].	7.11575e-64
NZ_CP047608.1\|WP_166060907.1\|4821070_4824208_+\|double-strand-break-repair-protein-AddB	gnl\|CDD\|274300	TIGR02786, conserved_hypothetical_protein, double-strand break repair protein AddB, alphaproteobacterial type. AddAB is a system well described in the Firmicutes as a replacement for RecBCD in many prokaryotes for the repair of double stranded break DNA damage. More recently, a distantly related gene pair conserved in many alphaproteobacteria was shown also to function in double-stranded break repair in Rhizobium etli. This family consists of AddB proteins of the alphaproteobacteial type. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP047608.1\|WP_166060898.1\|4803527_4803731_-\|DUF3311-domain-containing-protein	gnl\|CDD\|371707	pfam11755, DUF3311, Protein of unknown function (DUF3311). This is a family of short bacterial proteins of unknown function.	1.00709e-11
NZ_CP047608.1\|WP_166060899.1\|4806455_4806905_-\|tellurite-resistance-TerB-family-protein	gnl\|CDD\|143580	cd07176, terB, tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.	1.39995e-11
NZ_CP047608.1\|WP_166061546.1\|4809636_4812150_-\|PAS-domain-containing-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.80462e-46
NZ_CP047608.1\|WP_133089556.1\|4818750_4819527_+\|endonuclease/exonuclease/phosphatase-family-protein	gnl\|CDD\|377028	pfam03372, Exo_endo_phos, Endonuclease/Exonuclease/phosphatase family. This large family of proteins includes magnesium dependent endonucleases and a large number of phosphatases involved in intracellular signalling. This family includes: AP endonuclease proteins EC:4.2.99.18, DNase I proteins EC:3.1.21.1, Synaptojanin an inositol-1,4,5-trisphosphate phosphatase EC:3.1.3.56, Sphingomyelinase EC:3.1.4.12, and Nocturnin.	2.175e-08
NZ_CP047608.1\|WP_166060903.1\|4815998_4816610_-\|nitroreductase-family-protein	gnl\|CDD\|380315	cd02138, TdsD-like, nitroreductase similar to Burkholderia pseudomallei TdsD. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to Burkholderia pseudomallei TdsD, may be involved in the processing of organosulfur compounds. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer.	3.63178e-70
NZ_CP047608.1\|WP_166060908.1\|4824204_4827639_+\|double-strand-break-repair-helicase-AddA	gnl\|CDD\|274298	TIGR02784, ATP-dependent_nuclease_subunit_A, double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP047608.1\|WP_166061547.1\|4816778_4817567_+\|enoyl-CoA-hydratase	gnl\|CDD\|181249	PRK08139, PRK08139, enoyl-CoA hydratase; Validated.	4.56038e-128
NZ_CP047608.1\|WP_166060900.1\|4806952_4807699_-\|nucleotidyltransferase-family-protein	gnl\|CDD\|133044	cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.	7.10624e-107
NZ_CP047608.1\|WP_166060895.1\|4798704_4799265_+\|helix-hairpin-helix-domain-containing-protein	gnl\|CDD\|378965	pfam12836, HHH_3, Helix-hairpin-helix motif. The HhH domain is a short DNA-binding domain.	1.88022e-10
NZ_CP047608.1\|WP_108942122.1\|4801163_4802048_+\|metallophosphoesterase	gnl\|CDD\|224327	COG1409, Icc, Predicted phosphohydrolases [General function prediction only].	2.00233e-29
NZ_CP047608.1\|WP_166060902.1\|4814216_4815845_-\|AMP-binding-protein	gnl\|CDD\|341275	cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS). MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria.	0
NZ_CP047608.1\|WP_108942130.1\|4812642_4814049_-\|adenosylhomocysteinase	gnl\|CDD\|377487	pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hydrolase.	0
NZ_CP047608.1\|WP_166060896.1\|4799680_4800184_+\|DUF3016-domain-containing-protein	gnl\|CDD\|378666	pfam11454, DUF3016, Protein of unknown function (DUF3016). This is a bacterial family of uncharacterized proteins.	3.58545e-49
NZ_CP047608.1\|WP_166060901.1\|4807732_4809367_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	gnl\|CDD\|225719	COG3178, COG3178, Predicted phosphotransferase related to Ser/Thr protein kinases [General function prediction only].	1.76174e-109

>NZ_CP047608.1|WP_166060901.1|4807732_4809367_-|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE
MSEVPDSTAGSPRPGPSQGEAQMPSTSAPRRAAWEVLLPEEGATEDMAAFLAGILRPGDLVALSGGLGAGKTTLARAMIRELAGDPRLEVPSPTFTLMQPYETRSGRTVIHADLYRLRGPDELVELGFDELSETAITLVEWPERLGHRENSTLTVELSLRAEYGEEARLIRIDGTGDMRERIDRARAIRALLARSGWDEAERVLMQGDASSRAYERLVKPGGETAVLMISPPRPDGPPVKDGKPYSAVVKLAESIHAFVGMDRALRAIGFSAPKILGENLDAGLLILEDLGSEPVIENGAPRPERYAEAVRLLAKLHATDLPTTVPVSEGIDHAIPNYDLEALLFEAELLPEWYAPAIRGTTLSPEARSTFRDLWADALKDLIAEPATWTLRDYHSPNLIWLPERTGLERVGVIDFQDAVMGHPAYDVASLLQDARVDASADFELRLLGLYIRERRGRDIGFDMQAFARAYAVLAAQRATKILGIFARLDKRDGKPGYLAHLPRIEGYLARNLAHPALAAVRAWHETHLPSLVAPRPDAEPAAS
>NZ_CP047608.1|WP_166060900.1|4806952_4807699_-|nucleotidyltransferase-family-protein
MSAEPTPKKITRAFVLAAGLGKRMRPITATVPKPLVEVAGKALIDHALDRAAQGGIETAVVNVHWLADLMEGHLSHRTGAPEIIVSNERDALLETGGGVKKAIDLLEGEPFVVFNSDSFWLEGPRPNLGRLIEAWNPDTMDILLLVAPTATSLGYEGAGDFDMDSDGRLSWRGEREVAPFIYAGVAILKPELFTDTPEGSFSLTLLFDRAVKRNRLHGLRLDGQWLHVGTPEAIQAAEARVQESARIV
>NZ_CP047608.1|WP_166060899.1|4806455_4806905_-|tellurite-resistance-TerB-family-protein
MGLLHAAIEQFRTTLKAYAGDEALMQAAVSACANVAVADGELMTEEFETALAGIRANPIIEKGYDSLMLEHALYEGLGRARTRAGRAENLVRIGAIAERPEEQRRNVFLVAADVADHEGIGREEHAALAEVGAALRLNGDALLRRFPEV
>NZ_CP047608.1|WP_166061545.1|4803886_4805923_-|response-regulator
MTLAVSVMGLSIAVAMLALILVSLRRRGSVVPDCDMTEALQDRLWQIAESEERYRVLIEATTEVVVQRDGQGRITFASEGFAALLGVKPLELIGSTLSPQVIERGASVQRADGVRVVEERLMPVDGVPRWFSFIEMPAAGRADGPSWLRAGQDVTERVEAARSLDEAKSRAEAANVAKSRFLATVSHELRTPLNGILGMADLLLETRLDPEQRTYVEAFRTSGKALLGLVDGILDFSRIEAGRLDLAAEPFDVAALVEGVVELLAPRAQDKGLEIALDIADDLAALRVGDADRVRQILVNLAGNAIKFTQAGGVGVSLARSGEGFILTVEDTGPGIPEERIPILFEEFEQGEDSASHEGTGLGLAITRRLVERMNGTIEARSTVGRGSTFRVVLPLPAAEGAEAARGPRLAPRKILIVADSPFQAPFLARRLSRSGAAAVVVDSAEAGLDALSGVAFDALIADRSLGDAAVRRLAAEAARSGVRCSLILLSPFDRREFGAPNAAGFDSYLIKPVRARSLFDRLLEPGSAPARLPADATAQPAPAEPAPATAPGRRVLLAEDNPINALLATKALERLGAQVTLARDGLEALAAAEGQGPFDLALIDIRMPGLDGLEAARRIRAREAETGAPPLHLVALTANTGREDVAAAFAAGFDGFQPKPLNLRALPRLLDRRQEAA
>NZ_CP047608.1|WP_166060898.1|4803527_4803731_-|DUF3311-domain-containing-protein
MKLIQWLAALPALGMLAGPFFLNRVEPMVLGMPLLLAWLVGCTVATSAIMALIYLTDPANREPEEGP
>NZ_CP047608.1|WP_166060897.1|4802070_4803531_-|sodium:solute-symporter
MNAALLIIALAVVVALGLGLKARSGHDMDIEQWSVGKRGFGTLLVFLLMAGEIYTTFTFLGGSGWAYGKGGPTYYILCYLTLIYVISYWILPPAWRFAKERNLFSQPDYFAAHYDSKSLGILVALVGIVALVPYMVLQLKGLGIIVATASYGAISPTLAIWIGAAVLTVYVMVSGVRGSAWTAVLKDFMILFVVIFLGVYLPYHYYGGIGEMFTAIDQAKPGFLALPDRGQSATWFASTTLLTALGGWMFPHIFASIYTASDARTFRRNAVFLPLYQLMLLFVFFAGFAAVLQVPGLTGPDVDLSLFKIALQTFPPWFVGIIGATGVLTALVPGSMILIAGSTLIAQNLYRPLARNATDATTGRLAKGIAPILALACVGFTLYGGETIVQLLLIGYAVVTQLFPAFFFSLLPRNPLTRAGAMAGILAGVAAVAVTVVGGYTLAKLFPGLPGPVQDLNIGVVALALNLAVAFAVSLAGGGARRTALP
>NZ_CP047608.1|WP_108942122.1|4801163_4802048_+|metallophosphoesterase
MRRIAHISDLHFGRTDTAVVEGLAAELNRDPPDLIVASGDFTMRARRNEYAQARAFLDRLTAPWIAVPGNHDIAYFKLFTRFFHPFGRYRRFIARDTEPTFLDDEIAVVCLNTVRTWAPETDWSQGKITRAQIARTEERLAALPGHVFRIVVGHHPFMPPPWDAEARLVGRADEALDAFRRHGVGLTLAGHLHRHYARFAEAPETGAEPDTVTVDRGRAQAGGNRLLAVQAGSATSTRLRGNEPNAYNRIVIEDGRATVTVRVWTGAAFEDAREGDSLPGAAEERTGESEAAGR
>NZ_CP047608.1|WP_166060896.1|4799680_4800184_+|DUF3016-domain-containing-protein
MRAAALALLAALTAFAASPAAAQVRVTFVAPERYTDAQNRFGSGPSLRVVLAEMRRLFETLGNPVLAPGQTLDIAVLDIDLAGLDQPSFGPAQGVRVVTDITPPRFRLRYALKERGRTLLAAEEAVSDINFLLRANRLSSGQTFFYEREVLRDWFQARFVQRRPPPG
>NZ_CP047608.1|WP_108942119.1|4799468_4799684_+|hypothetical-protein
MQTTSGAPILRRDLGVEETTESDNVVRWDGERLYVEQDIYHNGQLVHRKYRRTITEPVARALQAILKRSQQ
>NZ_CP047608.1|WP_166060895.1|4798704_4799265_+|helix-hairpin-helix-domain-containing-protein
MLSGSVILRVLLLIVAAAGLAWIVQAFWLHGPERPAGPPAAATVSPARPTGVPAPPEPVRVVRPADPVREAAKEPVAPAAEASPAVAAPRADPSPEPVTSPAARTAPAPPPPDPVTEAEENAPPAAVALIDLNTASLAELNGLKGGGAIGRTIIQHRPYASVDQLLSKRVLNRATYQRIKDQVTAR
>NZ_CP047608.1|WP_166061546.1|4809636_4812150_-|PAS-domain-containing-protein
MGLERAARVLSRVGVLVVAAPVAALAEGAPSIEARPMLGAMQTHNVAGLAVVLGLILFATILSLVYLRERVGWTRKERALQDELAQLRGAHDRAEMLLHSEHQVLIAWAGRGEPSIVGDAGFAQDFRNQDARGIQGASRHLLTFGTWLTPQDAQLLEAAVATLRERGTGFRTNLRSLAGRFIEAQGQAVGGRALLRLRETTEERRELIELRHTLDEAKSRLAALAGLLDAIPQPVWHRSQDGALTFVNAAYAAAVEAPSRETALHHGLELLDRGAREQIARQVRRPGLAPQPLRLSAVVAGARRTLDVSESTLEAGRVGIAVDVSELESVRADLQRQMDANVRTLDQLPTAVAIFDARQRLIFHNAAYQRLWDLDPAFLEGRPLDGEILDRLRAARKLPEQADFRSWKADVLAAYRAVEPTDTPWYLPDGRTLRVVADPNPQGGLTYLYHDVSESMKLASRYDALMKEQAETLEALKEPVAVFGADGRLTVANRAFAATWRLDPATLAGKPHVDAVIAACRALTPDQSPWAGIRQSITGLSETRSGHGCRLDINDGTVLDCSSQPLPLGATLLTFIDVTASANVERALTEKNDALERASQLRDTFVHHVSYELRSPLTNIIGFTQLLGDETVGALNERQREYSEHIMRSSAALLVIINDILDLASIDAGSLELQRETIDVRSTVEAAARGIEDRLAESDIGLDLDVPEDIGSVFADGKRVRQILFNLLSNAVGFSAPGQQVRVEARREGTALRLTVIDRGRGIAPEVIDRVFDRFESNTLGTKHRGVGLGLSIVRSFVELHGGRVEIHSAPGAGTRVTCLFPVETPPGKGSLAEAAE
>NZ_CP047608.1|WP_108942130.1|4812642_4814049_-|adenosylhomocysteinase
MAAAKDYIVRDIGLADYGRKEISIAETEMPGLMATRAEYGASQPLKGAKIAGSLHMTIQTAVLIETLKALGADIRWVSCNIYSTQDHAAAAIAAAGIPVFAVKGETLTEYWDYTSKLFDWHDGGMPNMILDDGGDATMFVHLGLRAENGDTAFLDKPESEEEEVFFALLKKKLAEKPKGWFAGLADSIKGVSEETTTGVHRLYNLAKEGKLLFPAINVNDSVTKSKFDNLYGCKESLVDGIRRGTDVMMAGKVAMVAGFGDVGKGSAASLRNAGCRVLVSEIDPICALQAAMEGYEVVTMEDAAPRADIFVTATGNKDIITIEHMRAMKDRAIVCNIGHFDNEIQVAGLKNLKWQNIKPQVDEIEFADGHRIILLSEGRLVNLGNATGHPSFVMSASFTNQTLAQIELWTNPGKYERQVYTLPKSLDEKVAALHLEKIGVKLSKLRPDQAAYIGVSQTGPFKPEHYRY
>NZ_CP047608.1|WP_166060902.1|4814216_4815845_-|AMP-binding-protein
MAVPEPADTYERLVADFRWEIPERTNIAADVCDRWALNEPDRTALLVLGADDRPEPVSYGRLRSDSLRLAAALAARGIGPGDRVAVLLPQSAAVVVTHFATYRLGAIALPLAGLFGVEALRHRLTDSGARAIVTDAAGLTKLERLRADLPDLTTILSIDGADGHAEDFFAVLADAPDGFETRATGPDDPALMIYTSGTTGLAKGALHGHRVLLGHLPGWTLMHGFPAEGTGLMWTPSDWAWAGGLLNVLMPSLRLGMPVVAKASGRFEPEAAFRLMADLGVTHAFLPPTALRMLRSVANPRATFDLSALRNIASAGEALGAETFEWARAALGLTIGEAYGQTECNLVLASSARIGVARAGATGKPVPGHRVAVLRADGTEADIDETGEIAVRAPDPVLFLGYWNQPEATAKKFRDGWWMTGDRARRDADGYIRFVGREDDLITSAAYRIGPAEIEACLCAHPAVALAAAVGVPDPLRTEVVKAFVTLRAGFSPSDALAVEILAFAKARLSAHEVPRALAFRDALPMTTSGKIIRRQLRDEPA
>NZ_CP047608.1|WP_166060903.1|4815998_4816610_-|nitroreductase-family-protein
MTEEPTRPVTRTPDHAIEPIFAERWSPRAFTGEAVPEAELFRMFEAARWSPSAYNSQPWRFLYALRSTPDWDAFFDLLVPGNQKWAKDTGALVILVSNSRMKVGDEFKPSASHSLDAGAASLAFALQANRQGWHVHGMGGFDKERAVTVLNVPEHHRVEAAYAVGRATSWAELTEEQRAKERANARRPITDFAFRGGFPQRED
>NZ_CP047608.1|WP_166061547.1|4816778_4817567_+|enoyl-CoA-hydratase
MPVSKTGQTPLLLRTDHDGVATLTLNRPAARNALSLSLLEALRDAFAALAEDGSVRAVVLAAAGPAFCAGHDLKEMTGYRREADRGAKRFEELFALCSDVMMAIPALPQPVIAAVEGVATAAGCQLVASCDLAVAGAQARFATPGVQIGLFCSTPMVALSRNLSRKAAMRMLLTADMAEADEAQRLGLVNEVVEAGGALPAAQALAAGIAARSPYTVRVGKRAFYEQLEMPLADAYAHAGRVMLENMLARAAEEGIEAFLSR
>NZ_CP047608.1|WP_166060905.1|4817773_4818568_+|hypothetical-protein
MEALRLPVLRTVKLAVKDSINIISRMPILCLLALLAAVLFKLIEEIVLGPALTGEASAQNTLETYLIDIAEYTYVVPLAVFSCRFVILGRTATWREALRIKDILIAYGTVSIVFATAIFLPLLILKSNPDQLDAAVSMIFLTAFLISLSILIYWAIRWSLIYPAIAVDQIGASLQWSARTTKGIAWRVFITNATIPVIFSALLIPFLIEGYVDQIGRWSILLTAFASVSSNILFAAVASEIYLWCRANRESCDVSAPRAISVPA
>NZ_CP047608.1|WP_133089556.1|4818750_4819527_+|endonuclease/exonuclease/phosphatase-family-protein
MLLRRNAITLPAPGPDSKKIVSWNLLRRTGAAVDCLVTLIEQERPDLLLMQEATKEIAALKDRVGGVYAWAQLPGRIHGLAMWSPVEWGKPPEIVTLPPGVLIDRVCQVLDWGAFGVANVHLSHGQVLNRRQLRRIESHLPIRAAVLGDYNIVGPALLPGFRDVGPRRPTHAMVDVVPLRLDRCLVRGLVCHERAVLPRGLSDHHPIVVRLSPAPEGAAAVGRFRGMAEAVGRLRRAGARGEGGRRGRPASDGSGASP
>NZ_CP047608.1|WP_166060906.1|4819420_4820857_-|cardiolipin-synthase
MEEVLTRWLGTTASLRTEIVAAIGLVISVGVSVHVLLRKRVVGAAIGWIGLAWLAPVFGSLLYITFGINRVERRARRLKRRPSQTVDDTPQPSAHVPEPYRALDRAVQAITGLPTVAGNRFAMFRNGDEAYPAMLAAIAEARTSVALSSYIFRDDATGQAFCDALKAAQDRGAEVRVILDGIGSGYFFPAAWRRLRRLGVPAGLFMHSALPWRMPFLNLRTHKKLLIVDGRVAFTGGVNISDGNRVAQKPDFPIRDTHFRIEGPVVEHLTQAFIADWLFVADEELDGEAWLPPLAPAGGVTARVVTSGPDADIEKIATVILQAITCAKESIRLTTPYFLPNDLIVNALCLAATRGIEVDVVIPKKSDHRFVDWATRGHIDPLLKSGVRIWIDGPPFDHSKAMTVDGQWCFIGSANWDSRSFRLNFELNVEVYDTELARRLEAFIMGKRQTRLTLDDLDARLLPVRLRDAAVRLLLPYL
>NZ_CP047608.1|WP_166060907.1|4821070_4824208_+|double-strand-break-repair-protein-AddB
MSARAAPRVFTISPGAPFLPTLAEALVSGRLVGAVGHDPLALAAVTLYLPTQRAVRALSTVLAQRLGGAALLPRMIPLGEADEAELDLSSNSLLETPEDLLYPSIPALERRLILARLVQKWAETVDRELLPIDDEVPFLVPSSPADAVALAADLEGLMDALTVEGLPWSEIASAVEAEHSRYFRLTLDFLRIAAEHWPDILAARSLADPAARARRLVLAEAARLDRDRPDDPVIVAGSTGSVPATARLIAAVARLPRGAVVLPGLDLHLDEEGWEAIDGAGGTREAIAHGHPQAILHALTGPRGLAAGRTEVETLGDLSPEAVAREKLLSQALRPAETTDAWARLDPAERVTLAREGMAGLAVVEAADEREEALVAALALRETLETPGATAALVTPDRGLALRVSAELARWGIAAEDSAGLSLARSQAGRFARLVAELAAEVSSARVIALLAHPFVRLGLSRSEVVRAAAALEIGGLRGPAPIPKNSFEGMRAAVALQRNATERVPRAKKRLKPIDWDLSENILDRLEIALDAFRTDLHPATGNLVALAALHREACERMMGGVEADEAIDDPSLDALDGLFDDLESAEQEDLPGRFSDYAAFFTALARDRTVACAQRNAHPRLRILGPLEARLLSVDRIVLGGLDEAVWPVRQTTDAFLNRPMRGDVGLSPPERRIGQAAHDFVQGLGTHDAVVTRAAKREGSPTVPSRFLQRLRAFGGDAVWAGALARGQRLRGLAAILDRGQEAPPPRLKRPAPRPDPALFPERLSVTEIETLVRDPYSIFARHILGLEALEPMAVVPGAAERGSLIHKILGDFSQAHPGPLPTDAETLLYTIAFEAFGPLQDQYPELYAEWFPRYERMAVAFLEWEASQRQGLRAIHAERSGKLTIPLGERTFTLSARADRIEARADGGYCIVDFKTGTPPSNRTVFAGFSPQLTLEAAMLMHGAFEGLKATAPPDLLYVHASGGRDPFRPIPIKPPPGDGRPVEAIVTEHLERLRGLIARYMTGEAAYLSRPYPQYVRAYNEYDHLARVLEWSLAGEGEAA
>NZ_CP047608.1|WP_166060908.1|4824204_4827639_+|double-strand-break-repair-helicase-AddA
MNAPLTGFTVDDLTKAAQRRAADPRLSAWVSANAGAGKTKVLTDRVLRLLLDGAPPGRILCLTFTKAAAANMSIRVFQRLGRWVTLDDAALSAELIELTGERPARDTLRLARRLFARAVETPGGLKIETLHALCERLLHMFPFEANVPARFVVLDDNQSREAFEIETDNVLADAILGGNQDLSDALAVVGAEASGDTLREAIRAAMRARALFSDHRALEPALARLPRALALRDGASVETIEKEILEGSTLGDWREIAARLRTGKATDERLADGLLEAQAALDLGKALAPYRSVFFTDKDEPRAAKSFGTKAVPEDVKQALLDEQARLIPLFDDLRAARALARTRGLFRLAAEIHRRVEAQKTRLGALDFDDLIHKTLDLLSRVGASWVLYKLDRGVDHVLVDEAQDTNPQQWEILRTLTAEFAAGEGARGLTRTRFAVGDPKQSIYSFQGADPREFELTRRAWGRAAEGAGHDFADVSLRLSFRTANHVLAAVDAVFGVPEHFAGLSFDAGAPGTVHASARAGVPGAVELWGIEEPAEAEEPDAWAAPVDAPEPNAPAIVTARRIARAVKAWTTRGDACGRVWRPGDVLILVRKRSAAFEEVIRALKGLGVPVAGQDRLEVAGHIAVLDLVAVGRAGLLPADDLTLATALKTPLVGLTDDDLTRICARRPFSETLEDALTRHAEAGDGAAIRGLAALQLWIQLAAENGPFGFYAALLGPQGGRSRLVARLGGEAGDAIDVFLAQAADAENGGDAPCLEAFLSDYVVRPGRGKSGLSVKRDLEAGRDEVRVMTVHGAKGLEAPVVVVIDGCEPLGRNDPPLLGLDHAADGPLPPVWTGGRTQDCTATLAARSALQARAREEHNRLLYVAMTRAADHLVIAPYRGATRETPASWCEMVRIGLERGLGPGEAVETEHGPIRIWRDGSAAAFAAAAEAAAAPELEAVPDWLFAKAAPEAEAAPPLSPSGALGAADGQRQPQRRQGDAEARRRGALVHALLEHLPRIEPARRAEAAERFARARAPALAEAKRRDLVRSVLRLIEAPDLAPLFSGQARAEVALSGRIVVDGVERDVTGRIDRLVVEDGRVILCDFKTGRPPAEDAPLPEREAAQVALYARLAAAIWPDHPITALLVWTSGPVVRRVERTV

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Crispr_ID: NZ_CP047608_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047608_5

5006510-5006604

Orphan

Consensus_repeat	Method
TAGAGCATCGTCCCGAAAGGTGGCCCCCGGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047608_5

>merge|NZ_CP047608|5|5006510-5006604|CRISPRCasFinder
TAGAGCATCGTCCCGAAAGGTGGCCCCCGGCTTTCGGGAAAAGACGATGCGGGAACAAGAGGATAGAGCATCGTCCCGAAAGGTGGCCACCGGCT

>NZ_CP047608|5|5|5006510-5006604|CRISPRCasFinder
TAGAGCATCGTCCCGAAAGGTGGCCCCCGGCT	TTCGGGAAAAGACGATGCGGGAACAAGAGGA
TAGAGCATCGTCCCGAAAGGTGGCCACCGGCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047608.1\|WP_108942343.1\|5006689_5007766_-\|linear-amide-C-N-hydrolase	unknown	unknown	gnl\|CDD\|238885
NZ_CP047608.1\|WP_108942353.1\|5013344_5013587_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226045
NZ_CP047608.1\|WP_133089038.1\|4998085_4998589_+\|pantetheine-phosphate-adenylyltransferase	unknown	unknown	gnl\|CDD\|234674
NZ_CP047608.1\|WP_012456783.1\|5000314_5000719_-\|response-regulator	unknown	unknown	gnl\|CDD\|381145
NZ_CP047608.1\|WP_003605770.1\|5013592_5013826_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047608.1\|WP_166061019.1\|5001803_5003306_+\|DNA-polymerase-Y-family-protein	unknown	unknown	gnl\|CDD\|176458
NZ_CP047608.1\|WP_108942335.1\|4999660_5000122_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|223725
NZ_CP047608.1\|WP_133089037.1\|4999219_4999657_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047608.1\|WP_108942351.1\|5011833_5012094_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047608.1\|WP_166061021.1\|5008331_5009357_+\|patatin-like-phospholipase-family-protein	unknown	unknown	gnl\|CDD\|132848
NZ_CP047608.1\|WP_166061018.1\|5001115_5001889_+\|damage-inducible-mutagenesis-protein	unknown	unknown	gnl\|CDD\|226918
NZ_CP047608.1\|WP_108942327.1\|4995231_4997958_+\|DNA-gyrase-subunit-A	unknown	unknown	gnl\|CDD\|235502
NZ_CP047608.1\|WP_166061022.1\|5009451_5010546_-\|molybdenum-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226628
NZ_CP047608.1\|WP_166061025.1\|5014069_5014288_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047608.1\|WP_166061017.1\|4998614_4999154_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|223725
NZ_CP047608.1\|WP_166061015.1\|4993158_4994286_+\|Mrp/NBP35-family-ATP-binding-protein	unknown	unknown	gnl\|CDD\|378455
NZ_CP047608.1\|WP_166061023.1\|5010670_5011321_+\|glutathione-S-transferase	unknown	unknown	gnl\|CDD\|198298
NZ_CP047608.1\|WP_166061016.1\|4994282_4994915_+\|molybdenum-cofactor-guanylyltransferase-MobA	unknown	unknown	gnl\|CDD\|234725
NZ_CP047608.1\|WP_166061024.1\|5012549_5013263_-\|molybdate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|181841
NZ_CP047608.1\|WP_166061559.1\|5011450_5011711_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP047608.1\|WP_108942343.1\|5006689_5007766_-\|linear-amide-C-N-hydrolase	gnl\|CDD\|238885	cd01902, Ntn_CGH, Choloylglycine hydrolase (CGH) is a bile salt-modifying enzyme that hydrolyzes non-peptide carbon-nitrogen bonds in choloylglycine and choloyltaurine, both of which are present in bile. CGH is present in a number of probiotic microbial organisms that inhabit the gut. CGH has an N-terminal nucleophilic cysteine, as do other members of the Ntn hydrolase family to which CGH belongs.	2.83519e-147
NZ_CP047608.1\|WP_108942353.1\|5013344_5013587_-\|hypothetical-protein	gnl\|CDD\|226045	COG3514, COG3514, Uncharacterized protein conserved in bacteria [Function unknown].	5.17904e-11
NZ_CP047608.1\|WP_133089038.1\|4998085_4998589_+\|pantetheine-phosphate-adenylyltransferase	gnl\|CDD\|234674	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional.	1.2253e-82
NZ_CP047608.1\|WP_012456783.1\|5000314_5000719_-\|response-regulator	gnl\|CDD\|381145	cd18161, REC_hyHK_blue-like, phosphoacceptor receiver (REC) domain of hybrid sensor histidine kinase/response regulators similar to Pseudomonas savastanoi blue-light-activated histidine kinase. Typically, two-component regulatory systems (TCSs) consist of a sensor (histidine kinase) that responds to specific input(s) by modifying the output of a cognate response regulator (RR). TCSs allow organisms to sense and respond to changes in environmental conditions. Hybrid sensor histidine kinase (HK)/response regulators contain all the elements of a classical TCS in a single polypeptide chain. Pseudomonas savastanoi blue-light-activated histidine kinase is a photosensitive HK and RR that is involved in increased bacterial virulence upon exposure to light. RRs share the common phosphoacceptor REC domain and different effector/output domains such as DNA, RNA, ligand-binding, protein-binding, or enzymatic domains. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	7.30241e-17
NZ_CP047608.1\|WP_166061019.1\|5001803_5003306_+\|DNA-polymerase-Y-family-protein	gnl\|CDD\|176458	cd03468, PolY_like, DNA Polymerase Y-family. Y-family DNA polymerases are a specialized subset of polymerases that facilitate translesion synthesis (TLS), a process that allows the bypass of a variety of DNA lesions. Unlike replicative polymerases, TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. The active sites of TLS polymerases are large and flexible to allow the accomodation of distorted bases. Expression of Y-family polymerases is often induced by DNA damage and is believed to be highly regulated. TLS is likely induced by the monoubiquitination of the replication clamp PCNA, which provides a scaffold for TLS polymerases to bind in order to access the lesion. Because of their high error rates, TLS polymerases are potential targets for cancer treatment and prevention.	1.78768e-73
NZ_CP047608.1\|WP_108942335.1\|4999660_5000122_+\|peptidylprolyl-isomerase	gnl\|CDD\|223725	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones].	5.31093e-66
NZ_CP047608.1\|WP_166061021.1\|5008331_5009357_+\|patatin-like-phospholipase-family-protein	gnl\|CDD\|132848	cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to Z1214 protein of Escherichia coli. Patatin-like phospholipase similar to Z1214 protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.	2.3683e-48
NZ_CP047608.1\|WP_166061018.1\|5001115_5001889_+\|damage-inducible-mutagenesis-protein	gnl\|CDD\|226918	COG4544, COG4544, Uncharacterized conserved protein [Function unknown].	7.22995e-56
NZ_CP047608.1\|WP_108942327.1\|4995231_4997958_+\|DNA-gyrase-subunit-A	gnl\|CDD\|235502	PRK05560, PRK05560, DNA gyrase subunit A; Validated.	0
NZ_CP047608.1\|WP_166061022.1\|5009451_5010546_-\|molybdenum-ABC-transporter-ATP-binding-protein	gnl\|CDD\|226628	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism].	6.1389e-139
NZ_CP047608.1\|WP_166061017.1\|4998614_4999154_+\|peptidylprolyl-isomerase	gnl\|CDD\|223725	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones].	1.23732e-65
NZ_CP047608.1\|WP_166061015.1\|4993158_4994286_+\|Mrp/NBP35-family-ATP-binding-protein	gnl\|CDD\|378455	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.	1.31759e-151
NZ_CP047608.1\|WP_166061023.1\|5010670_5011321_+\|glutathione-S-transferase	gnl\|CDD\|198298	cd03189, GST_C_GTT1_like, C-terminal, alpha helical domain of GTT1-like Glutathione S-transferases. Glutathione S-transferase (GST) C-terminal domain family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pombe GST-III is implicated in the detoxification of various metals.	7.47505e-50
NZ_CP047608.1\|WP_166061016.1\|4994282_4994915_+\|molybdenum-cofactor-guanylyltransferase-MobA	gnl\|CDD\|234725	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed.	9.12828e-70
NZ_CP047608.1\|WP_166061024.1\|5012549_5013263_-\|molybdate-ABC-transporter-permease-subunit	gnl\|CDD\|181841	PRK09421, modB, molybdate ABC transporter permease subunit.	2.72556e-128

>NZ_CP047608.1|WP_166061019.1|5001803_5003306_+|DNA-polymerase-Y-family-protein
MRRVVSLYLPAWPTDRLRRSGSHAAPPDEPLVTVAQDGARRVLAGLDAAARRLGLSPGMSAAQAQAMIPGLHLVPAAPEADAAALERLGLWCQRYAPIVALDPPDGLLIDVTGAAHLFGGEAPLLADLSARLERTGITARLALADTPGCAWGLARFGAGGIVPPGGAAQALAPLPVAALRLGAEAVRALQEVGLTRIGGLTDKPRAALRLRFGAEILFRLDRALGHEPEPLTALAAPETPLVALRFAEPVGARESLERVVADLCARLVPELERRGLGARRLDLVFARVDRLDQAVRVGTARPSRDAAHLARLLTERLALVDPGFGIEEAWLGASRVEPLAESQASHLAAGPQAPDLAALVDTLLVRLGAARVYRLAPVESDLPERAVRRVPALAAPLGAVWPADLPRPARLLAPPEPVSAVAEIPDAPPLFFVWRNTRHRIARADGPERILGEWWVAEAEADLTRDYYRVETEAGERFWLFRDGSMEAQGRWWLHGLGEA
>NZ_CP047608.1|WP_166061018.1|5001115_5001889_+|damage-inducible-mutagenesis-protein
MPPLRSPAAPTLAELRRLTDSVGLGTGHGAGPDIVPTMPFGVAGLDTALPGGGLALGALHQIHEGGPRGRYAATAVLFAGGILARLDGPVLWCLHSRDLFAPALARVGLHPDRVVYCETWRDAEVLPAMEEGLRHRGLAGVVGELTRMALTPSRRLQLAAEGSGVTALVVHRLCAGEAVEPEPSAARTRWRVAPAPSDEIGRRMGRPRWRLELQRSRGGAPGAWIVEACDAQGRLAVPASLADRPAAQERVPRRAAG
>NZ_CP047608.1|WP_012456783.1|5000314_5000719_-|response-regulator
MSDARPTDRRPVILVVEDEPDERYLAAELLEEKGFEVIEAETAERALDILRQRGDGIDVVFSDVRTPGTIGGFELARIIGVTWPRIRLLLTSGDAGDQPSDLRVTATFMPKPWRAPEILTWLEEAAGLREPPEG
>NZ_CP047608.1|WP_108942335.1|4999660_5000122_+|peptidylprolyl-isomerase
MAETNETIVLETTKGRVVIALRPDLAPNHVERIKTLASQGFYDGVPFHRVIDGFMAQTGDPTGTGSGGSELPDLNAEFNAEPHVRGTCSMARTNFPHSANSQFFICFSDARFLDRQYTVWGKVIEGMEVVDTIKRGEPVNDPDRIVKATVAAA
>NZ_CP047608.1|WP_133089037.1|4999219_4999657_+|hypothetical-protein
MLAPARACAFEGIEPWHTLPQTLRGTQHVPLPAAGPEPAPADTLRALYPALAACWRVPEGLSRFERAEITARLSLRRDGSVIGTPQITFAKAPGDTRTRDILIRATLDAIARCTPVRLTPALGGAIAGRPLALRFIYDGPKGQGI
>NZ_CP047608.1|WP_166061017.1|4998614_4999154_+|peptidylprolyl-isomerase
MNRRHAVLGLALSAMLLAAPARAGENTVTLETKDGRVTIELRPEIAPKHVKQLKTLIGQGFYNGLKFHRVIDGFMVQTGDPKGNGTGGSSLPNIPAEFSSAPFKRGTVGMARSGDPNSANSQFFICIGDAEFLNNNYTVVGVVTSGMDVVDKIKKGSKANNGSVQDPDKIVKMTLGGGQ
>NZ_CP047608.1|WP_133089038.1|4998085_4998589_+|pantetheine-phosphate-adenylyltransferase
MTTRTALYAGSFDPVTNGHLDVVRQACRLVPRLVLAIGVHPGKAPLFSAEERAALLSETCGPLAAAEGASLEVVTFDDLAVSAARRCGARLFIRGLRDGTDLDYEMQLAGMNGAMAPEVQTVFLPASTGVRPITATLVRQIAAMGGDVSPFVPPVVAAQLAARFAKS
>NZ_CP047608.1|WP_108942327.1|4995231_4997958_+|DNA-gyrase-subunit-A
MADDKDAPGAGTPPPATDIKPVSITDEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSAFESGHLPERKYVKSARIVGDVIGKYHPHGDQSIYDALVRMAQDFSMRLMLIDGQGNFGSVDGDPAAAMRYTESRLAKPAVALLTDIDKNTVDFRPNYDEAHEEPTVLPARFPNLLVNGAGGIAVGMATNIPPHNLGELVDACVALIDDPALTIEALNEIVPGPDFPTGGMILGRAGTRQAYTTGRGSIIMRARSHVEELRKEREALIFTEIPYQVNKATLIEKIAELVKDKRIEGISDLRDESDRDGMRIVVEIKRDAMADVVLNQLYRYTPLQTSFGANMVALNGGRPELMNLKDLLLAFNDFREEVVSRRTKFLLNKARERAHVLCGLAIAVANIDEVIRLIRTSPDPNTARELLMARDWPAHDIAPLIALVDDPRHRVADDGTYRLSETQARAILDLRLQRLTALGRDEIGDELKKLADEIADYLDILRSRARIQAIVKDELAEVRELFATPRKTEIIDSDFSVEDEDLIAREDMVVTVSHAGYVKRVPLSTYRAQKRGGKGRSGMSTRDEDFVTRLFVANTHTPVLFFSDQGQAYKEKVWRLPVAAPNARGKALVNILHLQNEGERITTIMPLPEDEASWETLDVMFATASGNVRRNKLSDFVQVNRNGKIAMKLDPGDHIVHVEICRADQNVLLTTALGQCIRFPVEDVRVFKGRDSTGVRGISLAKDDRVISMAILNAFDASPEERAGYLKMRRAVIGDAGDEGDAAEAEESTAEAAISQERYSEMGAAEQYVLTLSERGFGKRSSSYEYRTSGRGGKGITAMRVNARNGHLVASFPVEASDQIMLVTNAGQLIRVPVDDIRIVGRASQGVTVFNTDKAERVVSVEHIEGEEENGEDEA
>NZ_CP047608.1|WP_166061016.1|4994282_4994915_+|molybdenum-cofactor-guanylyltransferase-MobA
MSLSPVSGSHVLGLILAGGLSRRMGGGDKPLRRLAGRSLLERVAERFEPQCAGGLALSANGDPARFRDVFSGAILPDTIPDHPGPLAGILAGMEAAAAVPGVTHVASVPGDAPFLPHDFVARLVAAAAEGKPIALAASGERRHFTSTLWPVDLRHDLRDWLGRGERRVGGFIERHGAAVASWPVEPVDPFLNLNAPEDLAAAEAMLARGG
>NZ_CP047608.1|WP_166061015.1|4993158_4994286_+|Mrp/NBP35-family-ATP-binding-protein
MAITRDDVLKALSTVSVDDGSTTLPGSGRLSQVVIDPGNRVMFSIRIDPSEAERFESVRREAEGRVLALAGVSSVLASLTAERGSNAPAQGAAPRPPGPGVAPPPRQGNALPGVRHIVAVASGKGGVGKSTTACNLALALGAQGLKVGLLDADIYGPSVPKLLGLSGKPRVIEGKTLEPLQAYGLKAMSIGLLIEPESAMIWRGPMVQSAITQMLRDVAWGELDVLVVDMPPGTGDAQLTMAQATPLSGAVIVSTPQDLALIDARRGVTMFRKVSVPILGVIENMATFICPNCGHASAIFGHGGARHEAERLEVPFLGEIPLTMAIRETSDAGRPVVATDPDGPQAKVYREIAQKLWGNLTGAPAGRAAPKIVIE
>NZ_CP047608.1|WP_108942343.1|5006689_5007766_-|linear-amide-C-N-hydrolase
MPQTLPTRIFVSLVAFWAAFQGILEPAGACSRFVYLGQDGKIFTARSMDWAKPIGTDLYILPRGMARNGEVGPDSIRWTSKYGSLVATALGNSTSDGANEEGLTANVLWLEESQYPPFDGKGPPGLAISAWAQYALDNFATVDEAVTALEKQPFTLVTSVIPGSQIKANVHLSLSDASGDSAIIEYIDGKQVIHHGRQYQVMTNSPTYEQQLALASYWSQIGGTVMLPGTGRASDRFARAAFYVKSIPPDGDLDQLLASVYGIIRNISVPLGLSTPDKPEISSTRWRTVFDHKRRLYFFESALSPNTFWTDLNQIDFSRESGKVLKLDLGVDQANVFAGNATGAYRPSEPFPFAGLPR
>NZ_CP047608.1|WP_166061021.1|5008331_5009357_+|patatin-like-phospholipase-family-protein
MELTSPNRDIALVFGGGNALGAYHAGAFEVLQARGIRPDWMVGASMGAITGAIIAGNAPEERIERLHRFWNEATLHTGFSGTDLLKPRQYYNALHSLLTLAWGRPSIFTHRYPGLWSALPWVPNDVALFDHRPLLDTLGRLVDFERLNRAEIRLTIACIDVATGEEVFFDNTRQTIRPEHILASAALLPAFPPVEVDGRLLCDAGYTNNLPLDPLFEPKPARDLLCIALDLFCLQADPPRSLDAVLERANDLIFASAARRAVSGLARNYALRERLDPDGPVATLLHLVYRAGADQLASKSFDFSPSSIRDRWQAGGRDMERGLDHLAAAPPASGRFRYACP
>NZ_CP047608.1|WP_166061022.1|5009451_5010546_-|molybdenum-ABC-transporter-ATP-binding-protein
MTIDVDVTLRRGGFALDVAFSAGAGLTALFGRSGSGKTTVIDLIAGLAQPQRGRIVADGTVLLDTARGIRVPVHRRRIGCVFQEARLMPHLSVRQNLRFGRLFSRGTGGPSLEAVADLLGIAPLLERRPAGLSGGERQRVAIGRALLARPRLLLMDEPLSALDEARKREILPYIERLRDAAGLPIVYVSHAVAEVARLASTVVVLEAGRVAASGPVDAVLRRPDLIPDGAEAGSVLAMRVERHDSATGLTRLTGPAGPLDLPLIDAPAGRRLNLRVPARDVLLALARPDGLSARNVLPGHILFMREEGTACLVEVTCGEATLAARLTRASARDLGLTVGRPVFAIVKSVALDAGGAPGGGRIEI
>NZ_CP047608.1|WP_166061023.1|5010670_5011321_+|glutathione-S-transferase
MITVHHLENSRSQRVLWLLEELGLDYTVKRYARDPATMLAPRELRAVHPLGKSPLIEIDGRVVAETGAIVECLTARADGALTPAPGTSERDRYTYFLHYAEGSAMPPLLLKLVFSRLAPGSPALLRPLVRAIAGKVTGGFVDPELRRHAAYWENELAERPYFCGAAFTAADIMMSFPLEAFAARGTGPRVTEWLARIHARPAYGRALERGGPYAYA
>NZ_CP047608.1|WP_166061559.1|5011450_5011711_-|hypothetical-protein
MTLAKIALGGSIGLISNTAANAMNHPAQTGTGGGPETTITAPHVAPTGRVMPRPRPLDSHTRGEAEQTLTPQFKDSFLMKDICVGC
>NZ_CP047608.1|WP_108942351.1|5011833_5012094_-|hypothetical-protein
MPRGWIYALTLLVAVTPALLPTSAAARRTLDLQGPGDPNRTACDIVVKRPGGNPTQDMTGSIGHAKSHQSGGGRANPLICYLPGTR
>NZ_CP047608.1|WP_166061024.1|5012549_5013263_-|molybdate-ABC-transporter-permease-subunit
MSGPSDWLGLSPDETTALLLSLRVATVATLASLPLGLLAAWLLARRRFPGHALLDGLVHLPLILPPVVTGYLLLLAFGRRGVFGAWLAEIGIVFSFRWTGAALACAVMGFPLMVRAMRLSIEAVDQRLEQAAATLGAPPPLVFLSVTLPLSLPGILAGAVLAFAKAMGEFGATITFVSNIPGETQTLPSAIYTLTQVPGGEAGALRLTLISVAVSMLALVASEALARRMSRRIGAGR
>NZ_CP047608.1|WP_108942353.1|5013344_5013587_-|hypothetical-protein
MAIDRTRRPSDPRQAAEAAFRAVTRKAPEAAPEAPRAPVIPGTRETVSLRIDRAVLEHFQKDGPGWQDRINAALKAAAGL
>NZ_CP047608.1|WP_003605770.1|5013592_5013826_-|hypothetical-protein
MSDDIDAKTRAAERAERAERMAREGQQAMAEHLAAVKAVDERTVRLRALRLAKEAEEAAERAANPPAPKRGRKKATA
>NZ_CP047608.1|WP_166061025.1|5014069_5014288_-|hypothetical-protein
MPVFVLRGAHRAADGQIGPPLFEEAITADNPVDAVRIANTQDLSTKDERANALWLVDAQGVLHWSLRRADRD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP047608_5	5.1\|5006542\|31\|NZ_CP047608\|CRISPRCasFinder	5006542-5006572	31	NZ_CP047608.1	667533-667563	1	0.968
NZ_CP047608_5	5.1\|5006542\|31\|NZ_CP047608\|CRISPRCasFinder	5006542-5006572	31	NZ_CP047608.1	3812941-3812971	2	0.935
NZ_CP047608_5	5.1\|5006542\|31\|NZ_CP047608\|CRISPRCasFinder	5006542-5006572	31	NZ_CP047608.1	1072164-1072194	2	0.935

1. spacer 5.1|5006542|31|NZ_CP047608|CRISPRCasFinder matches to position: 667533-667563, mismatch: 1, identity: 0.968

ttcgggaaaagacgatgcgggaacaagagga	CRISPR spacer
ttcggaaaaagacgatgcgggaacaagagga	Protospacer
*****.*************************

2. spacer 5.1|5006542|31|NZ_CP047608|CRISPRCasFinder matches to position: 3812941-3812971, mismatch: 2, identity: 0.935

ttcgggaaaagacgatgcgggaacaagagga	CRISPR spacer
ttcgggaaaagacgatgcggaaacaaaagga	Protospacer
********************.*****.****

3. spacer 5.1|5006542|31|NZ_CP047608|CRISPRCasFinder matches to position: 1072164-1072194, mismatch: 2, identity: 0.935

ttcgggaaaagacgatgcgggaacaagagga	CRISPR spacer
ttcgggaaaggacgatgcggaaacaagagga	Protospacer
*********.**********.**********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1427794 : 1432561

uncultured_Mediterranean_phage(50.0%)

head,tail,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_166058871.1\|1427794_1428421_-\|tail	phage tail tape measure protein	K7YBG2	uncultured_Mediterranean_phage	3.6e-06	44.5
WP_166058872.1\|1428420_1428651_-\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_108939417.1\|1428647_1428974_-	gene transfer agent family protein	NA	NA	NA	NA
WP_166058873.1\|1428976_1429387_-\|tail	phage major tail protein, TP901-1 family	NA	NA	NA	NA
WP_166058874.1\|1429416_1429836_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_166058875.1\|1429832_1430174_-\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_133087897.1\|1430196_1430772_-	hypothetical protein	NA	NA	NA	NA
WP_133087898.1\|1430805_1431561_+\|protease	trypsin-like serine protease	NA	NA	NA	NA
WP_166058876.1\|1431712_1432561_+\|protease	trypsin-like serine protease	I6WTR7	Cotesia_sesamiae_Mombasa_bracovirus	5.4e-05	22.9

DBSCAN-SWA_2

3846656 : 3873286

Stx2-converting_phage(25.0%)

transposase,integrase

attL 3838675:3838692|attR 3856823:3856840

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3838675:3838692	attL	NA	NA	NA	NA
WP_166060361.1\|3846656_3847724_-\|integrase	site-specific integrase	A0A0S2SYQ7	Pseudomonas_phage	4.0e-21	27.5
WP_166060362.1\|3847891_3848929_-	hypothetical protein	NA	NA	NA	NA
WP_166060364.1\|3849193_3849610_+	hypothetical protein	NA	NA	NA	NA
WP_166061497.1\|3849783_3850062_-	HAD family hydrolase	NA	NA	NA	NA
WP_166060365.1\|3850091_3850463_+\|transposase	transposase	NA	NA	NA	NA
WP_166060366.1\|3851685_3851901_+	hypothetical protein	NA	NA	NA	NA
WP_166060367.1\|3851930_3852212_-	hypothetical protein	NA	NA	NA	NA
WP_166060368.1\|3852687_3852891_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_166061498.1\|3853012_3854569_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.4e-123	48.0
WP_166060369.1\|3854638_3854986_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	6.6e-34	62.6
WP_166060365.1\|3854982_3855354_-\|transposase	transposase	NA	NA	NA	NA
WP_166060370.1\|3859023_3863529_+	hypothetical protein	NA	NA	NA	NA
3856823:3856840	attR	NA	NA	NA	NA
WP_166060371.1\|3865206_3865938_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	6.5e-31	33.6
WP_166060372.1\|3866168_3866720_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A1D8EQH2	Escherichia_phage	7.0e-30	44.6
WP_166060373.1\|3866846_3867905_+	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	2.1e-86	48.5
WP_166060374.1\|3867907_3868798_+	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA
WP_166060375.1\|3868813_3869695_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.1e-92	55.6
WP_166273314.1\|3870218_3870437_-	hypothetical protein	NA	NA	NA	NA
WP_166273445.1\|3870888_3871182_+	hypothetical protein	NA	NA	NA	NA
WP_166060200.1\|3872325_3873286_+\|transposase	IS630 family transposase	A0A1V0SCG6	Indivirus	3.2e-14	25.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP047608

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection