CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP048694	Vibrio coralliilyticus OCN008 chromosome II, complete sequence	0 crisprs	DEDDh,WYL,csa3,cas3	2
NZ_CP048693	Vibrio coralliilyticus OCN008 chromosome I, complete sequence	0 crisprs	DEDDh,cas3,csa3,DinG,csx1	2
NZ_CP048695	Vibrio coralliilyticus OCN008 plasmid unnamed1, complete sequence	0 crisprs	csa3,RT,WYL	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1139775 : 1148451

Burkholderia_virus(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_021456572.1\|1139775_1140681_-	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	3.9e-09	26.2
WP_006961590.1\|1140835_1141555_+	SDR family oxidoreductase	W8CYX9	Bacillus_phage	1.7e-07	33.6
WP_021456571.1\|1141659_1143303_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.3e-15	34.9
WP_006961588.1\|1143677_1144499_+	phosphate ABC transporter substrate-binding protein	M1U9L0	Synechococcus_phage	2.1e-06	28.5
WP_021456570.1\|1144594_1145527_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA
WP_019274275.1\|1145548_1146412_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA
WP_006961585.1\|1146469_1147219_+	phosphate ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.5e-14	29.4
WP_021456569.1\|1147320_1148451_-	GGDEF domain-containing protein	A0A2K8I9Y5	Pseudomonas_phage	1.6e-07	39.8

DBSCAN-SWA_2

1512543 : 1564868

Vibrio_phage(25.0%)

integrase,plate,holin,head,capsid,terminase,portal,tail

attL 1506862:1506876|attR 1538922:1538936

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1506862:1506876	attL	NA	NA	NA	NA
WP_021455708.1\|1512543_1513575_-\|integrase	tyrosine-type recombinase/integrase	E5G6L0	Salmonella_phage	2.6e-94	53.3
WP_021455707.1\|1513733_1514132_+	ASCH domain-containing protein	Q6SE87	Lactobacillus_prophage	4.6e-23	46.0
WP_021455706.1\|1514128_1515190_-	hypothetical protein	Q6SE88	Lactobacillus_prophage	8.7e-61	38.9
WP_021455705.1\|1515353_1515875_+	AAA family ATPase	NA	NA	NA	NA
WP_021455704.1\|1516003_1516222_-	hypothetical protein	NA	NA	NA	NA
WP_021455703.1\|1516300_1517047_-	hypothetical protein	NA	NA	NA	NA
WP_021455702.1\|1517118_1517685_-	hypothetical protein	NA	NA	NA	NA
WP_165579893.1\|1517687_1519043_-	AAA family ATPase	NA	NA	NA	NA
WP_021455700.1\|1519128_1519755_-	phage repressor protein CI	A0A1D9C9M6	Salinivibrio_phage	6.3e-35	40.3
WP_019275486.1\|1519844_1520057_+	hypothetical protein	U3PFJ1	Vibrio_phage	8.7e-13	51.4
WP_021455699.1\|1520168_1520708_+	ABC transporter	A0A2I7RNI1	Vibrio_phage	5.8e-53	59.2
WP_021455698.1\|1520736_1520949_+	hypothetical protein	A0A2I7RNH0	Vibrio_phage	2.7e-14	58.7
WP_019275357.1\|1520936_1521164_+	hypothetical protein	U3PIK2	Vibrio_phage	2.8e-17	54.2
WP_021455697.1\|1521160_1521394_+	hypothetical protein	NA	NA	NA	NA
WP_021455695.1\|1521649_1523479_+	replication endonuclease	A0A2P1CKY6	Pseudoalteromonas_phage	8.8e-69	38.3
WP_031342464.1\|1523606_1523825_+	hypothetical protein	Q8HA64	Vibrio_phage	1.7e-16	63.9
WP_019275350.1\|1523850_1524102_+	ogr/Delta-like zinc finger family protein	E5E3P1	Burkholderia_phage	3.5e-05	40.6
WP_019275349.1\|1524262_1524754_-	hypothetical protein	NA	NA	NA	NA
WP_021455693.1\|1524942_1525632_-	hypothetical protein	NA	NA	NA	NA
WP_165579894.1\|1526024_1527215_+	hypothetical protein	NA	NA	NA	NA
WP_021455690.1\|1527211_1528150_+\|tail	tail protein	NA	NA	NA	NA
WP_021455689.1\|1528142_1528748_+\|plate	baseplate assembly protein	B5TK73	Pseudomonas_phage	1.2e-09	29.4
WP_021455688.1\|1528744_1529146_+	hypothetical protein	Q8HAB8	Salmonella_phage	4.2e-08	31.7
WP_021455687.1\|1529142_1530186_+	hypothetical protein	Q8SBG4	Shigella_phage	9.3e-15	25.3
WP_021455686.1\|1530167_1530698_+	hypothetical protein	NA	NA	NA	NA
WP_021455683.1\|1532106_1532598_+	hypothetical protein	NA	NA	NA	NA
WP_021455682.1\|1532749_1532992_+	hypothetical protein	NA	NA	NA	NA
WP_021455681.1\|1532988_1533534_+	lysozyme	Q2A0C5	Sodalis_phage	8.8e-25	41.5
WP_021455680.1\|1533536_1534049_+	hypothetical protein	NA	NA	NA	NA
WP_021455679.1\|1534078_1535266_-	hypothetical protein	NA	NA	NA	NA
WP_021455678.1\|1535461_1536430_-\|portal	phage portal protein	A0A0M3LS06	Mannheimia_phage	6.3e-58	40.7
WP_021455677.1\|1536451_1538212_-\|terminase	terminase	E5E3X0	Burkholderia_phage	3.4e-110	41.1
WP_021455676.1\|1538346_1539162_+	hypothetical protein	Q9ZXM4	Pseudomonas_virus	2.0e-20	36.1
1538922:1538936	attR	NA	NA	NA	NA
WP_019274348.1\|1539194_1540232_+\|capsid	phage major capsid protein, P2 family	A0A0U4K5I9	Pseudomonas_phage	4.1e-63	40.5
WP_021455675.1\|1540340_1540790_+\|head	head completion/stabilization protein	NA	NA	NA	NA
WP_021455674.1\|1540789_1541254_+\|tail	phage tail protein	NA	NA	NA	NA
WP_021455673.1\|1541250_1541760_+	hypothetical protein	NA	NA	NA	NA
WP_021455672.1\|1541759_1541942_+	DUF2635 domain-containing protein	NA	NA	NA	NA
WP_021455671.1\|1541938_1543072_+\|tail	tail protein	A0A0C4UQS0	Shigella_phage	5.6e-50	40.4
WP_019274354.1\|1543075_1543441_+	hypothetical protein	NA	NA	NA	NA
WP_021455670.1\|1543451_1544132_+	hypothetical protein	NA	NA	NA	NA
WP_021455669.1\|1544115_1544403_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_141650565.1\|1544441_1544546_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_165579895.1\|1544582_1546472_+	hypothetical protein	A0A2I7QS75	Vibrio_phage	8.9e-08	26.6
WP_165579896.1\|1546575_1546764_+	hypothetical protein	NA	NA	NA	NA
WP_165579897.1\|1546838_1548047_-	hypothetical protein	NA	NA	NA	NA
WP_031342458.1\|1548434_1549109_+	Rha family transcriptional regulator	K7PLX4	Enterobacteria_phage	3.1e-27	59.6
WP_021455662.1\|1549190_1549829_-	hypothetical protein	NA	NA	NA	NA
WP_141650564.1\|1550190_1550739_-	hypothetical protein	NA	NA	NA	NA
WP_021455660.1\|1550754_1551321_-	RDD family protein	NA	NA	NA	NA
WP_021455658.1\|1552261_1552798_+	hypothetical protein	NA	NA	NA	NA
WP_165579898.1\|1553336_1555289_-	S8 family serine peptidase	NA	NA	NA	NA
WP_165579899.1\|1555637_1556834_+	hypothetical protein	NA	NA	NA	NA
WP_021455653.1\|1556849_1557548_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_006961215.1\|1558022_1558619_+	transcriptional regulator BetI	NA	NA	NA	NA
WP_021455652.1\|1558639_1560100_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_021455651.1\|1560119_1561820_+\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	4.2e-65	33.2
WP_019274370.1\|1561848_1562787_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_006961210.1\|1562835_1563678_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_021455650.1\|1563680_1564868_+\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.5e-24	33.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP048693

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

265317 : 274635

Streptococcus_phage(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_019274079.1\|265317_267405_-	elongation factor G	E4ZFJ7	Streptococcus_phage	1.2e-61	27.8
WP_006959823.1\|267632_268061_-	nucleoside-diphosphate kinase	L7Y4C4	Megavirus	5.5e-22	42.9
WP_019274077.1\|268119_269418_-	aminopeptidase PepB	Q6GYZ8	Mycoplasma_phage	5.3e-36	34.7
WP_006959825.1\|269580_269775_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_006959826.1\|269798_270137_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_021455723.1\|270150_272004_-	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	3.0e-109	40.1
WP_021455722.1\|272023_272539_-	co-chaperone HscB	NA	NA	NA	NA
WP_006959829.1\|272594_272918_-	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	1.2e-24	50.5
WP_004412993.1\|272985_273369_-	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	1.2e-52	78.2
WP_019274075.1\|273420_274635_-	IscS subfamily cysteine desulfurase	A0A1X7C038	Faustovirus	8.2e-31	29.3

DBSCAN-SWA_2

1592589 : 1599273

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_019277477.1\|1592589_1593723_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.3e-62	41.7
WP_021456407.1\|1593737_1594988_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	4.3e-99	47.9
WP_006957923.1\|1595218_1595668_+	transcriptional regulator NrdR	NA	NA	NA	NA
WP_165579531.1\|1595675_1596782_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	5.0e-43	34.0
WP_006957921.1\|1596784_1597435_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	7.7e-36	37.7
WP_006957920.1\|1597515_1598625_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	2.1e-65	39.6
WP_006957919.1\|1598802_1599273_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	4.9e-32	48.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP048694

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP048693

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection