CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP049792	Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence	1 crisprs	WYL,csa3	0	2	3	0
NZ_CP049791	Ralstonia solanacearum strain 203 chromosome, complete genome	1 crisprs	RT,cas3,WYL,csa3,DEDDh,DinG	0	1	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP049792_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049792_1

1465444-1465624

Orphan

Consensus_repeat	Method
GCGGGCGCGCAAGCACTGGCTGCCAACACCGCGCTCA	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP049792_1

>merge|NZ_CP049792|1|1465444-1465624|PILER-CR
GCGGGCGCGCAAGCACTGGCCGACAACACTGCGCTCACCACGCTCCGCGTCACCGGCAATCAGATCGCTATGGCGGGCGCGCAAGCACTGGCTGCCAATCGCAGCCTGACCAAGCTCAATATCAGCCAGAATGACATCCGGTCCGCGGGCGCGCAGGCACTGGCTGCCAACACCTCGCTCA

>NZ_CP049792|1|1|1465444-1465624|PILER-CR
GCGGGCGCGCAAGCACTGGCCGACAACACTGCGCTCA	CCACGCTCCGCGTCACCGGCAATCAGATCGCTATG
GCGGGCGCGCAAGCACTGGCTGCCAATCGCAGCCTGA	CCAAGCTCAATATCAGCCAGAATGACATCCGGTCCGCGGGCGCGCA
GGCACTGGCTGCCAACACCTCGCTCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049792.1\|WP_028854351.1\|1462726_1463833_+\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP049792.1\|WP_089191073.1\|1454745_1456446_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|234698
NZ_CP049792.1\|WP_058908737.1\|1472326_1473178_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|119349
NZ_CP049792.1\|WP_089191072.1\|1456894_1457278_-\|DUF4437-domain-containing-protein	unknown	unknown	gnl\|CDD\|380365
NZ_CP049792.1\|WP_151904009.1\|1456482_1456920_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049792.1\|WP_071507963.1\|1467751_1468621_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212492
NZ_CP049792.1\|WP_072633711.1\|1454561_1454747_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049792.1\|WP_028854356.1\|1473598_1474018_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049792.1\|WP_071507962.1\|1468620_1468869_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049792.1\|WP_071653892.1\|1470112_1471588_-\|ISNCY-family-transposase	unknown	unknown	gnl\|CDD\|379267
NZ_CP049792.1\|WP_089191070.1\|1476928_1480072_+\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226220
NZ_CP049792.1\|WP_162916069.1\|1457381_1458341_-\|LLM-class-oxidoreductase	unknown	unknown	gnl\|CDD\|274657
NZ_CP049792.1\|WP_058908706.1\|1458372_1459041_-\|DsbA-family-protein	unknown	unknown	gnl\|CDD\|225355
NZ_CP049792.1\|WP_016723105.1\|1466424_1466994_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP049792.1\|WP_058908705.1\|1459143_1460073_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP049792.1\|WP_058908738.1\|1474089_1475394_+\|TolC-family-protein	unknown	unknown	gnl\|CDD\|273829
NZ_CP049792.1\|WP_011004209.1\|1461487_1462429_-\|transcriptional-regulator-GcvA	unknown	unknown	gnl\|CDD\|182990
NZ_CP049792.1\|WP_071507965.1\|1460212_1461406_+\|2-polyprenyl-6-methoxyphenol-hydroxylase	unknown	unknown	gnl\|CDD\|235980
NZ_CP049792.1\|WP_058908739.1\|1475390_1476932_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|379862
NZ_CP049792.1\|WP_016723104.1\|1467047_1467710_+\|membrane-protein	unknown	unknown	gnl\|CDD\|187560

Protein	Function_ID	Function_description	E-value
NZ_CP049792.1\|WP_028854351.1\|1462726_1463833_+\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	1.08396e-53
NZ_CP049792.1\|WP_089191073.1\|1454745_1456446_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|234698	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed.	8.40261e-28
NZ_CP049792.1\|WP_089191072.1\|1456894_1457278_-\|DUF4437-domain-containing-protein	gnl\|CDD\|380365	cd02237, cupin_DAD_ChrR, 2,4'-Dihydroxyacetophenone dioxygenase (DAD) and anti-sigma factor ChrR, and similar proteins; cupin domain. This family includes the proteins 2,4'-Dihydroxyacetophenone dioxygenase (DAD) and anti-sigma factor ChrR. DAD catalyzes the oxidation of 2,4'-dihydroxyacetophenone to 4-hydroxybenzoate and formate as part of the 4-hydroxyacetophenone catabolic pathway. The enzyme is a homotetramer containing one iron per molecule of enzyme. Anti-sigma factor ChrR is a member of the ZAS (Zn2+ anti-sigma) subfamily of group IV anti-sigmas. It inhibits transcriptional activity by binding to the Rsp extra cytoplasmic function (ECF) sigma factor E (sigmaE). Some ChrR members contain tandem repeats of two distinct homologous functional domains. Members of this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold.	4.42098e-07
NZ_CP049792.1\|WP_071507963.1\|1467751_1468621_+\|SDR-family-oxidoreductase	gnl\|CDD\|212492	cd05327, retinol-DH_like_SDR_c_like, retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) OxidoReductase (LPOR) and related proteins, classical (c) SDRs. Classical SDR subgroup containing retinol-DHs, LPORs, and related proteins. Retinol is processed by a medium chain alcohol dehydrogenase followed by retinol-DHs. Pchlide reductases act in chlorophyll biosynthesis. There are distinct enzymes that catalyze Pchlide reduction in light or dark conditions. Light-dependent reduction is via an NADP-dependent SDR, LPOR. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. This subgroup includes the human proteins: retinol dehydrogenase -12, -13 ,and -14, dehydrogenase/reductase SDR family member (DHRS)-12 , -13 and -X (a DHRS on chromosome X), and WWOX (WW domain-containing oxidoreductase), as well as a Neurospora crassa SDR encoded by the blue light inducible bli-4 gene. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.64083e-90
NZ_CP049792.1\|WP_058908737.1\|1472326_1473178_+\|hypothetical-protein	gnl\|CDD\|119349	cd00598, GH18_chitinase-like, The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are included in this alignment model.	1.94379e-07
NZ_CP049792.1\|WP_071653892.1\|1470112_1471588_-\|ISNCY-family-transposase	gnl\|CDD\|379267	pfam13565, HTH_32, Homeodomain-like domain.	3.33484e-07
NZ_CP049792.1\|WP_089191070.1\|1476928_1480072_+\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|226220	COG3696, COG3696, Putative silver efflux pump [Inorganic ion transport and metabolism].	0
NZ_CP049792.1\|WP_162916069.1\|1457381_1458341_-\|LLM-class-oxidoreductase	gnl\|CDD\|274657	TIGR03571, lucif_BA3436, luciferase-type oxidoreductase, BA3436 family. This family is a distinct subgroup among members of the luciferase monooxygenase domain family. The larger family contains both FMN-binding enzymes (luciferase, alkane monooxygenase) and F420-binding enzymes (methylenetetrahydromethanopterin reductase, secondary alcohol dehydrogenase, glucose-6-phosphate dehydrogenase). Although some members of the domain family bind coenzyme F420 rather than FMN, members of this family are from species that lack the genes for F420 biosynthesis. A crystal structure, but not function, is known (but unpublished) for the member from Bacillus cereus, PDB\|2B81. [Unknown function, Enzymes of unknown specificity].	1.43203e-157
NZ_CP049792.1\|WP_058908706.1\|1458372_1459041_-\|DsbA-family-protein	gnl\|CDD\|225355	COG2761, FrnE, Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism].	3.59299e-86
NZ_CP049792.1\|WP_016723105.1\|1466424_1466994_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	2.12905e-14
NZ_CP049792.1\|WP_058908705.1\|1459143_1460073_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.52644e-87
NZ_CP049792.1\|WP_058908738.1\|1474089_1475394_+\|TolC-family-protein	gnl\|CDD\|273829	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family. Members of this model are outer membrane proteins from the TolC subfamily within the RND (Resistance-Nodulation-cell Division) efflux systems. These proteins, unlike the NodT subfamily, appear not to be lipoproteins. All are believed to participate in type I protein secretion, an ABC transporter system for protein secretion without cleavage of a signal sequence, although they may, like TolC, participate also in the efflux of smaller molecules as well. This family includes the well-documented examples TolC (E. coli), PrtF (Erwinia), and AprF (Pseudomonas aeruginosa). [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Porins].	1.69606e-10
NZ_CP049792.1\|WP_011004209.1\|1461487_1462429_-\|transcriptional-regulator-GcvA	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	2.14463e-153
NZ_CP049792.1\|WP_071507965.1\|1460212_1461406_+\|2-polyprenyl-6-methoxyphenol-hydroxylase	gnl\|CDD\|235980	PRK07236, PRK07236, hypothetical protein; Provisional.	0
NZ_CP049792.1\|WP_058908739.1\|1475390_1476932_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|379862	pfam16576, HlyD_D23, Barrel-sandwich domain of CusB or HlyD membrane-fusion. HlyD_D23 is the combined domains 2 and 3 of the membrane-fusion proteins CusB and HlyD, which forms a barrel-sandwich. CusB and HlyD proteins are membrane fusion proteins of the CusCFBA copper efflux system in E.coli and related bacteria. The whole molecule hinges between D2 and D3. Efflux systems of this resistance-nodulation-division group - RND - have been developed to excrete poisonous metal ions, and in E.coli the only one that deals with silver and copper is the CusA transporter. The transporter CusA works in conjunction with a periplasmic component that is a membrane fusion protein, eg CusB, and an outer-membrane channel component CusC in a CusABC complex driven by import of protons.	1.15693e-85
NZ_CP049792.1\|WP_016723104.1\|1467047_1467710_+\|membrane-protein	gnl\|CDD\|187560	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs. Atypical SDRs in this subgroup include CC3 (also known as TIP30) which is implicated in tumor suppression. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine rich NAD(P)-binding motif that resembles the extended SDRs, and have an active site triad of the SDRs (YXXXK and upstream Ser), although the upstream Asn of the usual SDR active site is substituted with Asp. For CC3, the Tyr of the triad is displaced compared to the usual SDRs and the protein is monomeric, both these observations suggest that the usual SDR catalytic activity is not present. NADP appears to serve an important role as a ligand, and may be important in the interaction with other macromolecules. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	8.50909e-14

>NZ_CP049792.1|WP_028854351.1|1462726_1463833_+|Gfo/Idh/MocA-family-oxidoreductase
MGTAEPSCRWGILGTAGIARKNWHAILHSGNGRIVAVGSRSAQTAQRFIAECQASAPAPYAVEAVEGYDALIRRPDIDALYIPLPTALRAEWAIKAARAGKHIVIEKPCGVTSADLLRIIDAANAAGVQFMDGVMFMHSSRLQAMRSVLDDGASVGDIRRITSHFSFDADAAWVERNSAVEPAGCLGDVGWYSIRLALFAMQYSMPVEVRGRILRSVKRPDGAGVVPTEFVGELLFDNGVTAALYSAFTTSRQQWADISGSKGYLHLKDFVLPHYGNEVAFTVGNDRFGGDGCFFNLERHEKTVSLPEYSNNHRTAQETGLYRTFGGLVLSGKREPFWPEVALKTQRVMDALLLSANAGGGPVAPIPA
>NZ_CP049792.1|WP_011004209.1|1461487_1462429_-|transcriptional-regulator-GcvA
MDLRKLPNLGALKMFEAAARLESFSRAAEALCVTHSAVSHQIRALEAELGMVLFKRDGRRITLTDPGRRYAERIRSALFEIAAATESMRTGDRERRLVISLLPSFAARWLTPRIGRFIERYPEIDVELQSTHVITDFNRDDVDVVLRLSDGNDPDLFVEPLLDEVFFPACAPTFNGGRLPKTPADLADVTLLRSDYEMWRAWFMAAGLEGWAEPRRGVLYQDASQLMQASMEGQGVGLVRRSLAMQEIINGRLVRLFDIDAPSPWTYWFICPQPLLDTFRVRALREWLHEEVAQFRALYERSPTAVTMAGRAA
>NZ_CP049792.1|WP_071507965.1|1460212_1461406_+|2-polyprenyl-6-methoxyphenol-hydroxylase
MCTQLATHPHPVNPPPRALVIGGSLGGLFAGNLLRRIGWHVDLYERSAHDLDSRGGGIVLQPDVVEVFRRTGVDLGAMDLGVGSVHRAVLRPDGSIRSRHFAPQTQTSWSLIYTTLRAAFGDAHYHQAKTLARIEQNPPAGTVTAHFTDGSSETADLLIGADGGNSAVRRQLWPDKVPTYAGYLAWRGLVPEEAMPPTAREMLHGDFGFANNRGSHILGYLVPGEHNDVRPGHRLYNWVWYRVADTRLLGEIMTDREGRPRGHSIPEGMLDARWVAHLRDDARALLPPAFREIVEATAQPFAQAIRDLASDHMVSGRVVILGDAASIPRPHTAASTSKAAANALALADALQALPDDVPAALSRWEPEQIALGKALRRQGMEAGNYLLFQRPPEGQVA
>NZ_CP049792.1|WP_058908705.1|1459143_1460073_+|LysR-family-transcriptional-regulator
MDRFGALSAFVAVVEHGGFAPAARRLGLAPSSLTRQLNALEASLGTRLMNRSTRSVTLTEAGAQYYDDARRILEELDSADRTVSELAGPPSGLLRVTMPVAFCRLHVAPAIPAFLRRFPGMRLDIRLTDAMVNLVEDRIDVAIRLGALTAPNLVARKLAPHRRVICASPDYLGEHGTPAQPRDLAHHNCLLFDYLTGDSTWTLTRDGKREKVPVSGNLRANGSELLREAAMGGAGMLLMPTWLVGDDIAAGRLVPVLEPWTPTPGADEGEGAIWAVYLPNRRGSKKLAGFLDFLAQHFGAPPYWERYRS
>NZ_CP049792.1|WP_058908706.1|1458372_1459041_-|DsbA-family-protein
MTLTVTITSDFICPWCLIGERRLAKAIGALPGGDAVELKWRPFELNPAMRPEGMDRQTYRSLKFGSWERSRMLDAHTVEAARDDGIAFDYAAIAKTPNTFLAHRLNWFAARRGLATPIANAVFSAYFEHGRDIGDAAVLADIAAENGLGRDEVSAFLAGDERTRDVREAERAVQAGGVRSVPLFDIDGETVSGAQSVAAFEAALRRAIARTHACGTGACPVS
>NZ_CP049792.1|WP_162916069.1|1457381_1458341_-|LLM-class-oxidoreductase
MQTSSRSGQHPGFARMFQPGRLTLGLMLPTAPLDHGIPDMTGQLDLAADADRYGFAALWTRDVPLFDPQFNDAGQIYDPWGWLGQLATVTRTIALSTAGIVLPLRHPLHTAKAAASVDIVSAGRFLLGAASGDRPSEYPAFNRSHEARGAVYREYIDVIRRSTAEDYPALSGTFGTLRDLDLLPKPTGRHLPILAIGSAQQSLQWIARNLDGWVTYFRPVETQRPRLDLWRSVVETQAGGAFLPFAQSMFIDLADDPDTAPSPIFLGYRLGRNRLIEELQALARLGANHVGFNLRHSVRPARDVLQELAECVLPLFPSA
>NZ_CP049792.1|WP_089191072.1|1456894_1457278_-|DUF4437-domain-containing-protein
MRKPDVTVVDTNRIPWERLDVPELNAVIPQKICVVDGDTGMAVIKIRYQAGFTNVSHWHNCAHGMYVLDGILVTSAGSFGPGSFVWFPEGTTMSHGAQADNDVTFLFITNKPFDIHYTHLEGDVPGQ
>NZ_CP049792.1|WP_151904009.1|1456482_1456920_-|hypothetical-protein
MKVMSPGSNGRVEGKPPGHSRLYAAMRPDGMHGHSIEQTIVLLLFALLLVNCSVIFSSFFLSMARLSAVGREQFRNARYPSIPAARIAPAIGCTQMSVIGGLGRIGAWFCHQFCDGIVLFKPGDCRGPQAMEGSPLSAGLPGRLS
>NZ_CP049792.1|WP_089191073.1|1454745_1456446_+|tyrosine-type-recombinase/integrase
MKTRLLPVAPSAGTLPGLPDAAELAVLRAWHAGLSAREAVERYLGERRAPGQSSRGILGRIRRQLAAFARRRQREDLALLFEIAATERARQGRVADQAVELLRTLPLPEPAISDDVALWLDARAVTVLRAAGIDTLADLTVRVPRRRRWWAAIPGLGQAGARRIEAFFAEHPRLTERAKALIAEQPRGVVVPWEQLRLPHEVDGSEGQFRAPRETSVLTADNDYEAVQAWLSLHESPATQRAYRKEAERLILWAIIERGRPLSSLTTEDAIAYRGFLRRPSPHERWVGPARPRASADWRPFTDGLSARSIAYSLSVLGAMFRWLIQQRYVLANPFAGIKVRGGGRTAALDASHAFSEGEWALVRTLADGLEWSYGWEAPAAQRLRFVLDFAYATGLRASELITARLGGIETDRQGDHWLSLIGKGGRAGKVALPPLARTALDRYLVERGLPVTQARWNPQTPLIGALGLDPGSGITGSRLWSVMRRFFRVAADLIEHDHTALAEKLRKASPHWMRHTHASHALARGAELTTVRDNLRHASISTTSIYLHGDDVKRARQIEAAFAAK
>NZ_CP049792.1|WP_072633711.1|1454561_1454747_-|hypothetical-protein
MGASLALSCGYCDKKSYRNRLVGIQSNGQSTQGFGLLAAAYATVQRGFKPWAVIGGLRTSF
>NZ_CP049792.1|WP_016723105.1|1466424_1466994_+|TetR/AcrR-family-transcriptional-regulator
MARPRSEDKRQTILRAATQLFAEEGLNAPTARIAKAAGVAEGTIFTYFANKDVLMNQLYLELKSQLRLALVPPPESAALREQVWLAWRTYVNWGIAHPEEHQVLAKLALSPKITETTQAEGSRAFCDVSCLLERAMAEGALRNQSPEFVGAMMGAMGDVTMVFIRNNPTSLEATCQDGFTAFWNAITGV
>NZ_CP049792.1|WP_016723104.1|1467047_1467710_+|membrane-protein
MRIILFGASGMVGASALREALKAPEVESVLCIGRRSCGIEHHKLRELRLPDLFDFAAVEDQLTGFDACIWAIGISSVGLDEIAYAKVTEELTLAWADVLLRLNPEFSFCYCSAGGAGGRSMWARVRQRVERALQAMPFRHAGAVRPGFIRPGPGIRSRTPAYQAGIVLLTPIFPLFPFFVRVFPFLFTTSEILGRAMLRVVEGRADRFILESTDINRLGA
>NZ_CP049792.1|WP_071507963.1|1467751_1468621_+|SDR-family-oxidoreductase
MQDLKNKVFLVTGATDGIGKAAATEFAKRGATVTLVGRNKAKTEGVVAELKAATGNENLDYLLCDLSRIAEVKRMAEAFKASHDRLDVLVNNAGATFKAPVLGPDGYELTFALNHLAYFQLTTSLLDLIRNTPGARVVSTSSSMQARGKIQLPDIATSLEGSGPNAYAASKLANILFTKELQRRLAGTTAVANCFEPGMVRTQFGGFGSDQGFLLNIVYALAKPFTSTPEQGADSLVWLATSPEAASLQGQYVSKRRPVTPQKQALDAKLAEDLWVLSEKLCTRASGRD
>NZ_CP049792.1|WP_071507962.1|1468620_1468869_+|hypothetical-protein
MLLPCAPKQAAIHGASDAANSCSRLLIHHQLQREGLAYQLKSIEQVQQITEERLREYNEQCTRGTPGALAVPGGGSVDLLVS
>NZ_CP049792.1|WP_071653892.1|1470112_1471588_-|ISNCY-family-transposase
MGRPDTITMSMRELDRCKVIQAVADDGLMVWRAAEKLGISKRQVERLVLRYREDGPQGLCSRKWGQPGHHQLPPGLESRVCGLIRDSYADFGPTLAAEKLRERHGIEISKACVRRIMIDAGFWVPRRQRPPKVHQPRNRRACLGELVQIDGSDHAWFEDRAPACTLLVYVDDATGRLMQLLFVPTESTQAYFAATRAYLERHGKPQAFYSDKAGVFRVNARDNAEGRGYTQFGRALFELNIDILCANTSQAKGRVERMNGVLQDRLVKELRLRRVSSMEAANAYATTFIADFNARFAKVPRSDFDAHRPLRGDEDLARIFCWREWRKVSQNLTLQYAKVMYLLEDRPESRRWIHRYVEVAEYPDGKIELWADGTALPYTTYDRLAQIDQGAIVDNKRLGHTLAIAAELQAQRDDRRWAGPSRTLVGEPPRPTHPAPQTKRQRQINRLDLERAIHQVGPPPLPSSPATRTTALRRQPKKNQTQHKAHARADI
>NZ_CP049792.1|WP_058908737.1|1472326_1473178_+|hypothetical-protein
MSFEIATWYDTWNSTGLDNLAQRKVPLGYASRYNLAFGEFVPCANGYTVDLNAQFASQVLTQIRTQAPGVLIYAGVGDTGLSATVLDNRRNNNRSTANIVAYLQQQGLNGIAIDSEQDGMTSVPELVSQLGPAFKQAGLGIAVSVPWPGNGPVGLYGDNAVAAFNQHVDAVELQDYSSEGTPADIQVWIHAGVRRAILMGGVCTENGNVQTSLEDTAAWTTFALQSQVRGMFSWRLDNDHGQHGTQEDVDPTFTGAQTIYETVQNYGSGADRSSGVLDVAGST
>NZ_CP049792.1|WP_028854356.1|1473598_1474018_+|hypothetical-protein
MRRSPRWLWFAGFLILTFLTVQLAAAAYACADGRVAVRPVMAMDEMADMADMTESCPEMAKRTPQDDSPHDGLCLEHCQAGTKSADHVSPQIPAFLPILLGQIEPTPIAALVPLSLAQGDAIARAPPPPIAILHCCFRT
>NZ_CP049792.1|WP_058908738.1|1474089_1475394_+|TolC-family-protein
MHLRFPPRGGRLFALAAALIAVSRLAYAEATCALSLQEAVGLASARSADAETSRAAIQSANEMAVAAGQLPDPVLKFGLDNVPLNKSDQFSLSRDFMTQRSISVVQEFTRADKRRAKADRYAAEAEAAEARRTVGLADVQRNAVAAWLDRWYAEQTGVLLGHHGHPLELARQAAMAAYRSGRGTRADVLAADLEVQKLHDRQDENRASIDMAMVSLERWIGPAARRPLGDRPTLEVPSSVQRLETDAFDAVPEVAVARRDVALAETEIRAAAEAKKPDVTVELMYSQRGSAYSNMGSLNISFPVPWDQGHRQDREVAAKLAQAQEARAKSEIQRRNTRAMVTTRLTELRRNLDRLKRYDETTLPLANAQANAALTAYRTNTGSLSAVAEANHRAVDTAQERLALEARTAKLWADLAFLVPLPTAQTEPATGSPQ
>NZ_CP049792.1|WP_058908739.1|1475390_1476932_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MTKTLIATVAGALLISAAAYGGYRIGLSRGTQPTRANASMSSPAGPNGLKAGEVDPQTGKRVLYWHDPMVPGQRFDKPGKSPFMDMQLVPVYADGDAGGSGVAIDSRVAQNLGVRTAEARLGNLGAVLEAPGSVAVDERSVQVIQARTSAFVQQVAVRATLDPVRRGQTLVSLYSPDWVAAQEEYLAVSRQAAHGQSDLVGAAKARMLQAGMTPGQISAVTASGKLQPGLAITSPIDGFVMEVAVRDGMTVTPGMTLFRLANLSRVWIIAEVPEAQRRTVTPGAPVKVSVAGVAEPETATVDAILPDVNAATRTIKVRIVLPNQDKRLVPGMFATVRFDGGQDKEALLIPSEAVIRTGQHSIVMVDGGQAGFVPTEIQTGREADGRVEVLQGLQAGQKVVTSGQFLIDSEASLRGTTARMTAPSAASSPAAATTEHEGTGRIEAVSGEGLTISHGPIPSLQWGAMTMDFAAPPAGLPKGLKSGERVRLRFHLDKDGMAVLSSVEPAGDTGGKP
>NZ_CP049792.1|WP_089191070.1|1476928_1480072_+|efflux-RND-transporter-permease-subunit
MIARLIFASIRNRFLVLLTTALLTAWGLWAVRSTPLDALPDLSDVQVIIRTPFPGQAPQIVENQVTYPLTTTMLSVPGAKTVRGYSFFGDSFVYVLFEDGTDLYWARSRVLEYLNQVQSRLPVAAKPALGPDATGVGWVYEYALVDKTGRHDLAQLRALQDWFLRFELKALPNVAEVASVGGMVKQFQVVLQPDKLRAYNLSQAKVLAALKGANQETGGSVLELGEAEYMVRASGYLKTLDDFRQIPLATTDAGVAVRLGDVATVQLGPEMRRGIAELDGQGEVAGGVIVMRSGKNALETIEAVKAKLAALRKSLPVGVEIVPVYDRSALIHRAVDNLTHKLIEEFIVVALVCVVFLFHLRSALVAIVSLPLGVLAAFLVMRYQGVNANIMSLGGIAIAVGAMVDAAVVMIENAHKHLERWHEAHPGHALAGHERWGVIGEAAAEVGPALFFSLLIITLSFIPVFTLEAQEGRLFSPLAFTKTYSMAAAAGLSVTLVPVLMGYLIRGQIPSEQSNPLSRWLIRLYQPVLARVLAYPRATVAIALVLLAATAWPILRTGGEFMPPLDEGDLLYMPSALPGLSAGKAAQLLQQTDRLIKAVPEVATVFGKAGRADTATDPAPMEMFETTIRFKPRDQWRPGMTTDKLVDELDRVVKVPGLSNIWVPPIRNRIDMLATGIKSPVGIKVAGTDLQEIDRLTTQIEAAVKTVPGVTSALAERLSGGRYIDVDIHRMAAGRYGLNIEDVQSIVASAIGGDNVGEVVDGLARFPINLRYPRDYRDSVEQLRSLPIVTDRGQQIVLSDVADIRVVSGPPMLRSENARLSGWVYVDIRGRDLRSAVRDMQAAVAKAVPMPAGYALSWSGQFEYLERASAKLKVVVPFTLLIIFVLLYLVFGRIDEALLIMGTLPLALIGGFWLLYGLGYNLSVAGVVGFIALAGVAAEFGVIMLLYLKQAWTERQERGQTTTDALLEAIQEGAVLRVRPKAMTVAVVLAGLIPIMWSHGTGSEVMQRIAAPMVGGMVTAPLLSLFVVPAVYLLLRRRSVSSFSQPR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP049792_1	1.1\|1465481\|35\|NZ_CP049792\|PILER-CR	1465481-1465515	35	NZ_CP049790	Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence	981524-981558	0	1.0
NZ_CP049792_1	1.1\|1465481\|35\|NZ_CP049792\|PILER-CR	1465481-1465515	35	NZ_CP016915	Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence	1577013-1577047	0	1.0
NZ_CP049792_1	1.1\|1465481\|35\|NZ_CP049792\|PILER-CR	1465481-1465515	35	CP023015	Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence	919975-920009	0	1.0
NZ_CP049792_1	1.1\|1465481\|35\|NZ_CP049792\|PILER-CR	1465481-1465515	35	NZ_CP052129	Ralstonia solanacearum strain FJAT1303.F1 plasmid Plas1, complete sequence	1024943-1024977	0	1.0
NZ_CP049792_1	1.1\|1465481\|35\|NZ_CP049792\|PILER-CR	1465481-1465515	35	NZ_CP052111	Ralstonia solanacearum strain FJAT15244.F50 plasmid Plas1, complete sequence	903309-903343	0	1.0
NZ_CP049792_1	1.1\|1465481\|35\|NZ_CP049792\|PILER-CR	1465481-1465515	35	NZ_CP052113	Ralstonia solanacearum strain FJAT15244.F1 plasmid Plas1, complete sequence	903309-903343	0	1.0
NZ_CP049792_1	1.1\|1465481\|35\|NZ_CP049792\|PILER-CR	1465481-1465515	35	CP023013	Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence	1067037-1067071	0	1.0
NZ_CP049792_1	1.1\|1465481\|35\|NZ_CP049792\|PILER-CR	1465481-1465515	35	NZ_CP049794	Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence	1690320-1690354	0	1.0
NZ_CP049792_1	1.1\|1465481\|35\|NZ_CP049792\|PILER-CR	1465481-1465515	35	NZ_CP049788	Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence	993332-993366	0	1.0
NZ_CP049792_1	1.1\|1465481\|35\|NZ_CP049792\|PILER-CR	1465481-1465515	35	NZ_CP015116	Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence	1329634-1329668	0	1.0
NZ_CP049792_1	1.1\|1465481\|35\|NZ_CP049792\|PILER-CR	1465481-1465515	35	NZ_CP049792	Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence	1465481-1465515	0	1.0
NZ_CP049792_1	1.1\|1465481\|35\|NZ_CP049792\|PILER-CR	1465481-1465515	35	NZ_CP022783	Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence	1072708-1072742	0	1.0
NZ_CP049792_1	1.1\|1465481\|35\|NZ_CP049792\|PILER-CR	1465481-1465515	35	NZ_CP022795	Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence	1069410-1069444	0	1.0
NZ_CP049792_1	1.1\|1465481\|35\|NZ_CP049792\|PILER-CR	1465481-1465515	35	NZ_CP009763	Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence	1045411-1045445	0	1.0
NZ_CP049792_1	1.1\|1465481\|35\|NZ_CP049792\|PILER-CR	1465481-1465515	35	NZ_CP052085	Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence	1132591-1132625	0	1.0
NZ_CP049792_1	1.1\|1465481\|35\|NZ_CP049792\|PILER-CR	1465481-1465515	35	NZ_CP052095	Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence	1160214-1160248	0	1.0
NZ_CP049792_1	1.1\|1465481\|35\|NZ_CP049792\|PILER-CR	1465481-1465515	35	NZ_CP052077	Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence	1044675-1044709	0	1.0
NZ_CP049792_1	1.1\|1465481\|35\|NZ_CP049792\|PILER-CR	1465481-1465515	35	NZ_CP052087	Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence	1132591-1132625	0	1.0
NZ_CP049792_1	1.1\|1465481\|35\|NZ_CP049792\|PILER-CR	1465481-1465515	35	NZ_CP052097	Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence	1160214-1160248	0	1.0
NZ_CP049792_1	1.1\|1465481\|35\|NZ_CP049792\|PILER-CR	1465481-1465515	35	NZ_CP052127	Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence	1132591-1132625	0	1.0
NZ_CP049792_1	1.1\|1465481\|35\|NZ_CP049792\|PILER-CR	1465481-1465515	35	NZ_CP052079	Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence	1044698-1044732	0	1.0
NZ_CP049792_1	1.1\|1465481\|35\|NZ_CP049792\|PILER-CR	1465481-1465515	35	NZ_CP052089	Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence	1132595-1132629	0	1.0
NZ_CP049792_1	1.1\|1465481\|35\|NZ_CP049792\|PILER-CR	1465481-1465515	35	NZ_CP052093	Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence	1160214-1160248	0	1.0
NZ_CP049792_1	1.1\|1465481\|35\|NZ_CP049792\|PILER-CR	1465481-1465515	35	NZ_CP052101	Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence	1160214-1160248	0	1.0
NZ_CP049792_1	1.1\|1465481\|35\|NZ_CP049792\|PILER-CR	1465481-1465515	35	NZ_CP052099	Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence	1160214-1160248	0	1.0
NZ_CP049792_1	1.1\|1465481\|35\|NZ_CP049792\|PILER-CR	1465481-1465515	35	NZ_CP052125	Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence	1044698-1044732	0	1.0
NZ_CP049792_1	1.1\|1465481\|35\|NZ_CP049792\|PILER-CR	1465481-1465515	35	NZ_CP052123	Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence	1044698-1044732	0	1.0
NZ_CP049792_1	1.1\|1465481\|35\|NZ_CP049792\|PILER-CR	1465481-1465515	35	NZ_CP052131	Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence	1132590-1132624	0	1.0
NZ_CP049792_1	1.1\|1465481\|35\|NZ_CP049792\|PILER-CR	1465481-1465515	35	NZ_CP052081	Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence	1044698-1044732	0	1.0
NZ_CP049792_1	1.1\|1465481\|35\|NZ_CP049792\|PILER-CR	1465481-1465515	35	NZ_CP052083	Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence	1044698-1044732	0	1.0
NZ_CP049792_1	1.1\|1465481\|35\|NZ_CP049792\|PILER-CR	1465481-1465515	35	NZ_CP052091	Ralstonia solanacearum strain FJAT15340.F6 plasmid Plas1, complete sequence	1160215-1160249	0	1.0
NZ_CP049792_1	1.2\|1465553\|46\|NZ_CP049792\|PILER-CR	1465553-1465598	46	NZ_CP021449	Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence	1370728-1370773	0	1.0
NZ_CP049792_1	1.2\|1465553\|46\|NZ_CP049792\|PILER-CR	1465553-1465598	46	CP023013	Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence	1067098-1067143	0	1.0
NZ_CP049792_1	1.2\|1465553\|46\|NZ_CP049792\|PILER-CR	1465553-1465598	46	NZ_CP049790	Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence	981452-981497	0	1.0
NZ_CP049792_1	1.2\|1465553\|46\|NZ_CP049792\|PILER-CR	1465553-1465598	46	NZ_CP049794	Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence	1690381-1690426	0	1.0
NZ_CP049792_1	1.2\|1465553\|46\|NZ_CP049792\|PILER-CR	1465553-1465598	46	NZ_CP049788	Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence	993393-993438	0	1.0
NZ_CP049792_1	1.2\|1465553\|46\|NZ_CP049792\|PILER-CR	1465553-1465598	46	NZ_CP021763	Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence	1154220-1154265	0	1.0
NZ_CP049792_1	1.2\|1465553\|46\|NZ_CP049792\|PILER-CR	1465553-1465598	46	NZ_CP015116	Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence	1329695-1329740	0	1.0
NZ_CP049792_1	1.2\|1465553\|46\|NZ_CP049792\|PILER-CR	1465553-1465598	46	NZ_CP049792	Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence	1465542-1465587	0	1.0
NZ_CP049792_1	1.2\|1465553\|46\|NZ_CP049792\|PILER-CR	1465553-1465598	46	NZ_CP016915	Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence	1576941-1576986	0	1.0
NZ_CP049792_1	1.2\|1465553\|46\|NZ_CP049792\|PILER-CR	1465553-1465598	46	NZ_CP022783	Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence	1072769-1072814	0	1.0
NZ_CP049792_1	1.2\|1465553\|46\|NZ_CP049792\|PILER-CR	1465553-1465598	46	NZ_CP022795	Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence	1069471-1069516	0	1.0
NZ_CP049792_1	1.2\|1465553\|46\|NZ_CP049792\|PILER-CR	1465553-1465598	46	NZ_CP022482	Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence	39022-39067	0	1.0
NZ_CP049792_1	1.2\|1465553\|46\|NZ_CP049792\|PILER-CR	1465553-1465598	46	NZ_CP009763	Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence	1045472-1045517	0	1.0
NZ_CP049792_1	1.2\|1465553\|46\|NZ_CP049792\|PILER-CR	1465553-1465598	46	CP023015	Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence	919903-919948	0	1.0
NZ_CP049792_1	1.2\|1465553\|46\|NZ_CP049792\|PILER-CR	1465553-1465598	46	NZ_CP052085	Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence	1132652-1132697	0	1.0
NZ_CP049792_1	1.2\|1465553\|46\|NZ_CP049792\|PILER-CR	1465553-1465598	46	NZ_CP052095	Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence	1160275-1160320	0	1.0
NZ_CP049792_1	1.2\|1465553\|46\|NZ_CP049792\|PILER-CR	1465553-1465598	46	NZ_CP021765	Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence	1154230-1154275	0	1.0
NZ_CP049792_1	1.2\|1465553\|46\|NZ_CP049792\|PILER-CR	1465553-1465598	46	NZ_CP052087	Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence	1132652-1132697	0	1.0
NZ_CP049792_1	1.2\|1465553\|46\|NZ_CP049792\|PILER-CR	1465553-1465598	46	NZ_CP052097	Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence	1160275-1160320	0	1.0
NZ_CP049792_1	1.2\|1465553\|46\|NZ_CP049792\|PILER-CR	1465553-1465598	46	NZ_CP052127	Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence	1132652-1132697	0	1.0
NZ_CP049792_1	1.2\|1465553\|46\|NZ_CP049792\|PILER-CR	1465553-1465598	46	NZ_CP052089	Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence	1132656-1132701	0	1.0
NZ_CP049792_1	1.2\|1465553\|46\|NZ_CP049792\|PILER-CR	1465553-1465598	46	NZ_CP052093	Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence	1160275-1160320	0	1.0
NZ_CP049792_1	1.2\|1465553\|46\|NZ_CP049792\|PILER-CR	1465553-1465598	46	NZ_CP052101	Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence	1160275-1160320	0	1.0
NZ_CP049792_1	1.2\|1465553\|46\|NZ_CP049792\|PILER-CR	1465553-1465598	46	NZ_CP052099	Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence	1160275-1160320	0	1.0
NZ_CP049792_1	1.2\|1465553\|46\|NZ_CP049792\|PILER-CR	1465553-1465598	46	NZ_CP052129	Ralstonia solanacearum strain FJAT1303.F1 plasmid Plas1, complete sequence	1024871-1024916	0	1.0
NZ_CP049792_1	1.2\|1465553\|46\|NZ_CP049792\|PILER-CR	1465553-1465598	46	NZ_CP052131	Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence	1132651-1132696	0	1.0
NZ_CP049792_1	1.2\|1465553\|46\|NZ_CP049792\|PILER-CR	1465553-1465598	46	CP011998	Ralstonia solanacearum strain YC45 plasmid, complete sequence	1036981-1037026	0	1.0
NZ_CP049792_1	1.2\|1465553\|46\|NZ_CP049792\|PILER-CR	1465553-1465598	46	NZ_CP052091	Ralstonia solanacearum strain FJAT15340.F6 plasmid Plas1, complete sequence	1160276-1160321	0	1.0
NZ_CP049792_1	1.2\|1465553\|46\|NZ_CP049792\|PILER-CR	1465553-1465598	46	NZ_CP052111	Ralstonia solanacearum strain FJAT15244.F50 plasmid Plas1, complete sequence	903237-903282	0	1.0
NZ_CP049792_1	1.2\|1465553\|46\|NZ_CP049792\|PILER-CR	1465553-1465598	46	NZ_CP052113	Ralstonia solanacearum strain FJAT15244.F1 plasmid Plas1, complete sequence	903237-903282	0	1.0
NZ_CP049792_1	1.1\|1465481\|35\|NZ_CP049792\|PILER-CR	1465481-1465515	35	NZ_CP021449	Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence	1370800-1370834	1	0.971
NZ_CP049792_1	1.1\|1465481\|35\|NZ_CP049792\|PILER-CR	1465481-1465515	35	NZ_CP022482	Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence	39094-39128	1	0.971
NZ_CP049792_1	1.1\|1465481\|35\|NZ_CP049792\|PILER-CR	1465481-1465515	35	CP011998	Ralstonia solanacearum strain YC45 plasmid, complete sequence	1037053-1037087	1	0.971
NZ_CP049792_1	1.1\|1465481\|35\|NZ_CP049792\|PILER-CR	1465481-1465515	35	NZ_CP021763	Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence	1154159-1154193	1	0.971
NZ_CP049792_1	1.1\|1465481\|35\|NZ_CP049792\|PILER-CR	1465481-1465515	35	NZ_CP021765	Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence	1154169-1154203	1	0.971
NZ_CP049792_1	1.2\|1465553\|46\|NZ_CP049792\|PILER-CR	1465553-1465598	46	NZ_CP052077	Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence	1044736-1044781	1	0.978
NZ_CP049792_1	1.2\|1465553\|46\|NZ_CP049792\|PILER-CR	1465553-1465598	46	NZ_CP052079	Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence	1044759-1044804	1	0.978
NZ_CP049792_1	1.2\|1465553\|46\|NZ_CP049792\|PILER-CR	1465553-1465598	46	NZ_CP052125	Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence	1044759-1044804	1	0.978
NZ_CP049792_1	1.2\|1465553\|46\|NZ_CP049792\|PILER-CR	1465553-1465598	46	NZ_CP052123	Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence	1044759-1044804	1	0.978
NZ_CP049792_1	1.2\|1465553\|46\|NZ_CP049792\|PILER-CR	1465553-1465598	46	NZ_CP052081	Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence	1044759-1044804	1	0.978
NZ_CP049792_1	1.2\|1465553\|46\|NZ_CP049792\|PILER-CR	1465553-1465598	46	NZ_CP052083	Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence	1044759-1044804	1	0.978

1. spacer 1.1|1465481|35|NZ_CP049792|PILER-CR matches to NZ_CP049790 (Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

ccacgctccgcgtcaccggcaatcagatcgctatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
***********************************

2. spacer 1.1|1465481|35|NZ_CP049792|PILER-CR matches to NZ_CP016915 (Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

ccacgctccgcgtcaccggcaatcagatcgctatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
***********************************

3. spacer 1.1|1465481|35|NZ_CP049792|PILER-CR matches to CP023015 (Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

ccacgctccgcgtcaccggcaatcagatcgctatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
***********************************

4. spacer 1.1|1465481|35|NZ_CP049792|PILER-CR matches to NZ_CP052129 (Ralstonia solanacearum strain FJAT1303.F1 plasmid Plas1, complete sequence) position: , mismatch: 0, identity: 1.0

ccacgctccgcgtcaccggcaatcagatcgctatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
***********************************

5. spacer 1.1|1465481|35|NZ_CP049792|PILER-CR matches to NZ_CP052111 (Ralstonia solanacearum strain FJAT15244.F50 plasmid Plas1, complete sequence) position: , mismatch: 0, identity: 1.0

ccacgctccgcgtcaccggcaatcagatcgctatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
***********************************

6. spacer 1.1|1465481|35|NZ_CP049792|PILER-CR matches to NZ_CP052113 (Ralstonia solanacearum strain FJAT15244.F1 plasmid Plas1, complete sequence) position: , mismatch: 0, identity: 1.0

ccacgctccgcgtcaccggcaatcagatcgctatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
***********************************

7. spacer 1.1|1465481|35|NZ_CP049792|PILER-CR matches to CP023013 (Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

ccacgctccgcgtcaccggcaatcagatcgctatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
***********************************

8. spacer 1.1|1465481|35|NZ_CP049792|PILER-CR matches to NZ_CP049794 (Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

ccacgctccgcgtcaccggcaatcagatcgctatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
***********************************

9. spacer 1.1|1465481|35|NZ_CP049792|PILER-CR matches to NZ_CP049788 (Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

ccacgctccgcgtcaccggcaatcagatcgctatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
***********************************

10. spacer 1.1|1465481|35|NZ_CP049792|PILER-CR matches to NZ_CP015116 (Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

ccacgctccgcgtcaccggcaatcagatcgctatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
***********************************

11. spacer 1.1|1465481|35|NZ_CP049792|PILER-CR matches to NZ_CP049792 (Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

ccacgctccgcgtcaccggcaatcagatcgctatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
***********************************

12. spacer 1.1|1465481|35|NZ_CP049792|PILER-CR matches to NZ_CP022783 (Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

ccacgctccgcgtcaccggcaatcagatcgctatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
***********************************

13. spacer 1.1|1465481|35|NZ_CP049792|PILER-CR matches to NZ_CP022795 (Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

ccacgctccgcgtcaccggcaatcagatcgctatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
***********************************

14. spacer 1.1|1465481|35|NZ_CP049792|PILER-CR matches to NZ_CP009763 (Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

ccacgctccgcgtcaccggcaatcagatcgctatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
***********************************

15. spacer 1.1|1465481|35|NZ_CP049792|PILER-CR matches to NZ_CP052085 (Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence) position: , mismatch: 0, identity: 1.0

ccacgctccgcgtcaccggcaatcagatcgctatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
***********************************

16. spacer 1.1|1465481|35|NZ_CP049792|PILER-CR matches to NZ_CP052095 (Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence) position: , mismatch: 0, identity: 1.0

ccacgctccgcgtcaccggcaatcagatcgctatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
***********************************

17. spacer 1.1|1465481|35|NZ_CP049792|PILER-CR matches to NZ_CP052077 (Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence) position: , mismatch: 0, identity: 1.0

ccacgctccgcgtcaccggcaatcagatcgctatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
***********************************

18. spacer 1.1|1465481|35|NZ_CP049792|PILER-CR matches to NZ_CP052087 (Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence) position: , mismatch: 0, identity: 1.0

ccacgctccgcgtcaccggcaatcagatcgctatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
***********************************

19. spacer 1.1|1465481|35|NZ_CP049792|PILER-CR matches to NZ_CP052097 (Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence) position: , mismatch: 0, identity: 1.0

ccacgctccgcgtcaccggcaatcagatcgctatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
***********************************

20. spacer 1.1|1465481|35|NZ_CP049792|PILER-CR matches to NZ_CP052127 (Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence) position: , mismatch: 0, identity: 1.0

ccacgctccgcgtcaccggcaatcagatcgctatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
***********************************

21. spacer 1.1|1465481|35|NZ_CP049792|PILER-CR matches to NZ_CP052079 (Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence) position: , mismatch: 0, identity: 1.0

ccacgctccgcgtcaccggcaatcagatcgctatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
***********************************

22. spacer 1.1|1465481|35|NZ_CP049792|PILER-CR matches to NZ_CP052089 (Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence) position: , mismatch: 0, identity: 1.0

ccacgctccgcgtcaccggcaatcagatcgctatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
***********************************

23. spacer 1.1|1465481|35|NZ_CP049792|PILER-CR matches to NZ_CP052093 (Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence) position: , mismatch: 0, identity: 1.0

ccacgctccgcgtcaccggcaatcagatcgctatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
***********************************

24. spacer 1.1|1465481|35|NZ_CP049792|PILER-CR matches to NZ_CP052101 (Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence) position: , mismatch: 0, identity: 1.0

ccacgctccgcgtcaccggcaatcagatcgctatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
***********************************

25. spacer 1.1|1465481|35|NZ_CP049792|PILER-CR matches to NZ_CP052099 (Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence) position: , mismatch: 0, identity: 1.0

ccacgctccgcgtcaccggcaatcagatcgctatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
***********************************

26. spacer 1.1|1465481|35|NZ_CP049792|PILER-CR matches to NZ_CP052125 (Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence) position: , mismatch: 0, identity: 1.0

ccacgctccgcgtcaccggcaatcagatcgctatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
***********************************

27. spacer 1.1|1465481|35|NZ_CP049792|PILER-CR matches to NZ_CP052123 (Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence) position: , mismatch: 0, identity: 1.0

ccacgctccgcgtcaccggcaatcagatcgctatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
***********************************

28. spacer 1.1|1465481|35|NZ_CP049792|PILER-CR matches to NZ_CP052131 (Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence) position: , mismatch: 0, identity: 1.0

ccacgctccgcgtcaccggcaatcagatcgctatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
***********************************

29. spacer 1.1|1465481|35|NZ_CP049792|PILER-CR matches to NZ_CP052081 (Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence) position: , mismatch: 0, identity: 1.0

ccacgctccgcgtcaccggcaatcagatcgctatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
***********************************

30. spacer 1.1|1465481|35|NZ_CP049792|PILER-CR matches to NZ_CP052083 (Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence) position: , mismatch: 0, identity: 1.0

ccacgctccgcgtcaccggcaatcagatcgctatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
***********************************

31. spacer 1.1|1465481|35|NZ_CP049792|PILER-CR matches to NZ_CP052091 (Ralstonia solanacearum strain FJAT15340.F6 plasmid Plas1, complete sequence) position: , mismatch: 0, identity: 1.0

ccacgctccgcgtcaccggcaatcagatcgctatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
***********************************

32. spacer 1.2|1465553|46|NZ_CP049792|PILER-CR matches to NZ_CP021449 (Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

33. spacer 1.2|1465553|46|NZ_CP049792|PILER-CR matches to CP023013 (Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

34. spacer 1.2|1465553|46|NZ_CP049792|PILER-CR matches to NZ_CP049790 (Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

35. spacer 1.2|1465553|46|NZ_CP049792|PILER-CR matches to NZ_CP049794 (Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

36. spacer 1.2|1465553|46|NZ_CP049792|PILER-CR matches to NZ_CP049788 (Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

37. spacer 1.2|1465553|46|NZ_CP049792|PILER-CR matches to NZ_CP021763 (Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

38. spacer 1.2|1465553|46|NZ_CP049792|PILER-CR matches to NZ_CP015116 (Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

39. spacer 1.2|1465553|46|NZ_CP049792|PILER-CR matches to NZ_CP049792 (Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

40. spacer 1.2|1465553|46|NZ_CP049792|PILER-CR matches to NZ_CP016915 (Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

41. spacer 1.2|1465553|46|NZ_CP049792|PILER-CR matches to NZ_CP022783 (Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

42. spacer 1.2|1465553|46|NZ_CP049792|PILER-CR matches to NZ_CP022795 (Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

43. spacer 1.2|1465553|46|NZ_CP049792|PILER-CR matches to NZ_CP022482 (Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

44. spacer 1.2|1465553|46|NZ_CP049792|PILER-CR matches to NZ_CP009763 (Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

45. spacer 1.2|1465553|46|NZ_CP049792|PILER-CR matches to CP023015 (Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

46. spacer 1.2|1465553|46|NZ_CP049792|PILER-CR matches to NZ_CP052085 (Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

47. spacer 1.2|1465553|46|NZ_CP049792|PILER-CR matches to NZ_CP052095 (Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

48. spacer 1.2|1465553|46|NZ_CP049792|PILER-CR matches to NZ_CP021765 (Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

49. spacer 1.2|1465553|46|NZ_CP049792|PILER-CR matches to NZ_CP052087 (Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

50. spacer 1.2|1465553|46|NZ_CP049792|PILER-CR matches to NZ_CP052097 (Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

51. spacer 1.2|1465553|46|NZ_CP049792|PILER-CR matches to NZ_CP052127 (Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

52. spacer 1.2|1465553|46|NZ_CP049792|PILER-CR matches to NZ_CP052089 (Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

53. spacer 1.2|1465553|46|NZ_CP049792|PILER-CR matches to NZ_CP052093 (Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

54. spacer 1.2|1465553|46|NZ_CP049792|PILER-CR matches to NZ_CP052101 (Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

55. spacer 1.2|1465553|46|NZ_CP049792|PILER-CR matches to NZ_CP052099 (Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

56. spacer 1.2|1465553|46|NZ_CP049792|PILER-CR matches to NZ_CP052129 (Ralstonia solanacearum strain FJAT1303.F1 plasmid Plas1, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

57. spacer 1.2|1465553|46|NZ_CP049792|PILER-CR matches to NZ_CP052131 (Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

58. spacer 1.2|1465553|46|NZ_CP049792|PILER-CR matches to CP011998 (Ralstonia solanacearum strain YC45 plasmid, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

59. spacer 1.2|1465553|46|NZ_CP049792|PILER-CR matches to NZ_CP052091 (Ralstonia solanacearum strain FJAT15340.F6 plasmid Plas1, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

60. spacer 1.2|1465553|46|NZ_CP049792|PILER-CR matches to NZ_CP052111 (Ralstonia solanacearum strain FJAT15244.F50 plasmid Plas1, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

61. spacer 1.2|1465553|46|NZ_CP049792|PILER-CR matches to NZ_CP052113 (Ralstonia solanacearum strain FJAT15244.F1 plasmid Plas1, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

62. spacer 1.1|1465481|35|NZ_CP049792|PILER-CR matches to NZ_CP021449 (Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence) position: , mismatch: 1, identity: 0.971

ccacgctccgcgtcaccggcaatcagatcgctatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcggtatg	Protospacer
****************************** ****

63. spacer 1.1|1465481|35|NZ_CP049792|PILER-CR matches to NZ_CP022482 (Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence) position: , mismatch: 1, identity: 0.971

ccacgctccgcgtcaccggcaatcagatcgctatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcggtatg	Protospacer
****************************** ****

64. spacer 1.1|1465481|35|NZ_CP049792|PILER-CR matches to CP011998 (Ralstonia solanacearum strain YC45 plasmid, complete sequence) position: , mismatch: 1, identity: 0.971

ccacgctccgcgtcaccggcaatcagatcgctatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcggtatg	Protospacer
****************************** ****

65. spacer 1.1|1465481|35|NZ_CP049792|PILER-CR matches to NZ_CP021763 (Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.971

ccacgctccgcgtcaccggcaatcagatcgctatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcggtatg	Protospacer
****************************** ****

66. spacer 1.1|1465481|35|NZ_CP049792|PILER-CR matches to NZ_CP021765 (Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.971

ccacgctccgcgtcaccggcaatcagatcgctatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcggtatg	Protospacer
****************************** ****

67. spacer 1.2|1465553|46|NZ_CP049792|PILER-CR matches to NZ_CP052077 (Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence) position: , mismatch: 1, identity: 0.978

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagtctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
******.***************************************

68. spacer 1.2|1465553|46|NZ_CP049792|PILER-CR matches to NZ_CP052079 (Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence) position: , mismatch: 1, identity: 0.978

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagtctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
******.***************************************

69. spacer 1.2|1465553|46|NZ_CP049792|PILER-CR matches to NZ_CP052125 (Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence) position: , mismatch: 1, identity: 0.978

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagtctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
******.***************************************

70. spacer 1.2|1465553|46|NZ_CP049792|PILER-CR matches to NZ_CP052123 (Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence) position: , mismatch: 1, identity: 0.978

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagtctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
******.***************************************

71. spacer 1.2|1465553|46|NZ_CP049792|PILER-CR matches to NZ_CP052081 (Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence) position: , mismatch: 1, identity: 0.978

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagtctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
******.***************************************

72. spacer 1.2|1465553|46|NZ_CP049792|PILER-CR matches to NZ_CP052083 (Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence) position: , mismatch: 1, identity: 0.978

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagtctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
******.***************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

395270 : 403503

Ralstonia_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_080511052.1\|395270_395498_-	ogr/Delta-like zinc finger family protein	E5E3P1	Burkholderia_phage	3.0e-11	51.7
WP_020829484.1\|395545_395764_-	hypothetical protein	NA	NA	NA	NA
WP_089190947.1\|395787_396507_-	hypothetical protein	NA	NA	NA	NA
WP_028852826.1\|396522_396789_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	1.4e-12	50.6
WP_089190946.1\|397412_397679_-	hypothetical protein	R9U4D0	Rhizobium_phage	5.2e-07	56.5
WP_089190945.1\|397701_399924_-	DUF3274 domain-containing protein	A0A077K801	Ralstonia_phage	0.0e+00	79.9
WP_089191146.1\|399920_400820_-	hypothetical protein	A0A077K9W3	Ralstonia_phage	1.5e-117	76.1
WP_165590634.1\|400842_403503_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	0.0e+00	79.9

DBSCAN-SWA_2

944835 : 1034312

Ralstonia_phage(25.0%)

integrase,tail,transposase

attL 944765:944824|attR 1029265:1030447

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
944765:944824	attL	NA	NA	NA	NA
WP_016723619.1\|944835_945801_+\|transposase	IS5-like element IS1405 family transposase	A0A077K814	Ralstonia_phage	5.8e-181	100.0
WP_020829725.1\|945961_946873_+	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	5.3e-75	47.3
WP_011003839.1\|947037_948363_+	MFS transporter	Q6JIH2	Burkholderia_virus	6.1e-104	50.0
WP_058908665.1\|948694_949096_+	hypothetical protein	NA	NA	NA	NA
WP_011003842.1\|949360_950503_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_087451503.1\|961357_962162_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_071653941.1\|962304_963123_+	hypothetical protein	NA	NA	NA	NA
WP_071508017.1\|963201_964968_+	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
WP_071654077.1\|964991_966425_+	DUF746 domain-containing protein	NA	NA	NA	NA
WP_064049488.1\|967004_967502_+	DUF2924 domain-containing protein	K4I3X1	Acidithiobacillus_phage	4.5e-20	38.8
WP_071508016.1\|967498_968881_+	recombinase family protein	K4ICM1	Acidithiobacillus_phage	1.3e-133	58.9
WP_081366778.1\|968913_969354_+	LacI family transcriptional regulator	NA	NA	NA	NA
WP_016721870.1\|970393_971380_-\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	7.6e-152	81.7
WP_011003443.1\|971549_972881_-\|transposase	IS701-like element ISRso17 family transposase	NA	NA	NA	NA
WP_089190398.1\|972970_973225_+	hypothetical protein	NA	NA	NA	NA
WP_016727774.1\|973230_973677_+	hypothetical protein	NA	NA	NA	NA
WP_089190397.1\|973802_974588_+	hypothetical protein	A0A2D2W2E0	Stenotrophomonas_phage	5.3e-47	43.2
WP_081365215.1\|974732_975980_+\|integrase	tyrosine-type recombinase/integrase	A0A142K7N4	Mycobacterium_phage	2.2e-15	27.6
WP_081365216.1\|975976_976879_+\|integrase	tyrosine-type recombinase/integrase	A0A2P1A0S4	Gordonia_phage	1.5e-05	30.1
WP_028854752.1\|976875_977895_+\|integrase	tyrosine-type recombinase/integrase	A0A2L1IV36	Escherichia_phage	4.2e-12	31.9
WP_089190395.1\|978049_978445_+	hypothetical protein	NA	NA	NA	NA
WP_038938671.1\|978441_978663_+	hypothetical protein	NA	NA	NA	NA
WP_089190394.1\|978637_979282_+	hypothetical protein	NA	NA	NA	NA
WP_016723619.1\|981711_982677_+\|transposase	IS5-like element IS1405 family transposase	A0A077K814	Ralstonia_phage	5.8e-181	100.0
WP_071895622.1\|983228_984356_+	DNA cytosine methyltransferase	Q6J1P4	Burkholderia_virus	9.1e-101	54.6
WP_089190393.1\|984421_988525_+\|tail	phage tail tape measure protein	V9QL83	Rhizobium_phage	3.9e-24	36.2
WP_089190392.1\|988530_988926_+	hypothetical protein	A0A0M4UTA7	Ralstonia_phage	9.2e-32	52.3
WP_111395595.1\|988926_992517_+	hypothetical protein	A0A0M4U447	Ralstonia_phage	0.0e+00	53.6
WP_089190391.1\|992528_993695_+	hypothetical protein	NA	NA	NA	NA
WP_089190390.1\|993698_994181_+	hypothetical protein	A0A0M4TU90	Ralstonia_phage	1.5e-12	42.7
WP_058908398.1\|994177_994576_+	hypothetical protein	NA	NA	NA	NA
WP_089191137.1\|994580_996425_+	hypothetical protein	A0A0M4UKC5	Ralstonia_phage	1.4e-106	45.7
WP_089190389.1\|996434_996659_+	hypothetical protein	NA	NA	NA	NA
WP_003270772.1\|996726_997017_+	membrane protein	K4I011	Acidithiobacillus_phage	3.1e-13	47.6
WP_020832987.1\|997013_997490_+	hypothetical protein	K4ICR8	Acidithiobacillus_phage	1.4e-71	85.9
WP_075463060.1\|997486_997948_+	lysozyme	K4I410	Acidithiobacillus_phage	2.3e-66	81.6
WP_020832985.1\|998015_998315_+	hypothetical protein	NA	NA	NA	NA
WP_089191136.1\|998377_998716_-	DUF1484 domain-containing protein	NA	NA	NA	NA
WP_165590838.1\|999802_1008313_+	hemagglutinin	NA	NA	NA	NA
WP_081365364.1\|1008309_1008765_+	hypothetical protein	NA	NA	NA	NA
WP_119889766.1\|1008807_1008996_+	hypothetical protein	NA	NA	NA	NA
WP_071624187.1\|1009642_1010599_-\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	3.3e-59	43.4
WP_089191134.1\|1010840_1013381_+	filamentous hemagglutinin N-terminal domain-containing protein	A0A0R6PJK4	Moraxella_phage	5.4e-16	30.7
WP_089191133.1\|1013392_1015144_+	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
WP_089191132.1\|1015156_1016002_+	hypothetical protein	NA	NA	NA	NA
WP_071654059.1\|1016195_1017287_+	DUF746 domain-containing protein	NA	NA	NA	NA
WP_011003864.1\|1018813_1019371_-	redoxin domain-containing protein	NA	NA	NA	NA
WP_058908418.1\|1019360_1020404_-	transporter	NA	NA	NA	NA
WP_058908419.1\|1020494_1020872_-	DUF2946 domain-containing protein	NA	NA	NA	NA
WP_103025940.1\|1021158_1022356_+\|transposase	IS3 family transposase	A0A1B0Z042	Pseudomonas_phage	1.3e-92	61.8
WP_049842290.1\|1022353_1022794_+	hypothetical protein	NA	NA	NA	NA
WP_011003870.1\|1023141_1023714_-	hypothetical protein	NA	NA	NA	NA
WP_058908422.1\|1024104_1024767_+	site-specific DNA-methyltransferase	A0A2H4JGF1	uncultured_Caudovirales_phage	1.8e-64	59.5
WP_135006101.1\|1024899_1025094_+	site-specific DNA-methyltransferase	A0A2H4JGF1	uncultured_Caudovirales_phage	1.1e-27	87.5
WP_086005422.1\|1025154_1026304_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	1.7e-94	61.1
WP_160329291.1\|1026297_1026441_+	hypothetical protein	NA	NA	NA	NA
WP_058908424.1\|1027890_1028112_-	hypothetical protein	NA	NA	NA	NA
WP_071508596.1\|1028744_1029038_+	hypothetical protein	A0A2H4JIC6	uncultured_Caudovirales_phage	1.2e-20	89.1
WP_016723619.1\|1029335_1030301_+\|transposase	IS5-like element IS1405 family transposase	A0A077K814	Ralstonia_phage	5.8e-181	100.0
WP_071615494.1\|1030725_1032360_+	1,4-beta-cellobiosidase	NA	NA	NA	NA
1029265:1030447	attR	NA	NA	NA	NA
WP_155772889.1\|1032478_1032778_+	hypothetical protein	NA	NA	NA	NA
WP_071615493.1\|1033122_1033455_-	hypothetical protein	NA	NA	NA	NA
WP_011003885.1\|1033505_1033976_-	DUF2147 domain-containing protein	NA	NA	NA	NA
WP_011003886.1\|1034180_1034312_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_3

1257246 : 1279147

Vibrio_phage(50.0%)

plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011004038.1\|1257246_1258593_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_089191097.1\|1258636_1259311_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_011004040.1\|1259585_1260233_+	hypothetical protein	NA	NA	NA	NA
WP_011004041.1\|1260269_1260782_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_058908677.1\|1260774_1262265_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_011004043.1\|1262353_1262857_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_011004044.1\|1262917_1263391_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_058908678.1\|1263453_1265304_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_058908679.1\|1265267_1266359_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_028861634.1\|1266391_1269109_+	type VI secretion system ATPase TssH	A0A2I7SAX5	Vibrio_phage	4.5e-85	32.0
WP_071623901.1\|1269129_1271886_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	3.5e-37	25.5
WP_089191096.1\|1271903_1273037_+	DUF4123 domain-containing protein	NA	NA	NA	NA
WP_071653887.1\|1273014_1275792_+	hypothetical protein	NA	NA	NA	NA
WP_058908010.1\|1275804_1276878_+	hypothetical protein	NA	NA	NA	NA
WP_071653888.1\|1276909_1277734_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_011003443.1\|1277815_1279147_+\|transposase	IS701-like element ISRso17 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP049791

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP049791_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049791_1

2151927-2152037

Orphan

Consensus_repeat	Method
GCGGACGGCTCGGGACGAATATAGGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP049791_1

>merge|NZ_CP049791|1|2151927-2152037|CRISPRCasFinder
GCGGACGGCTCGGGACGAATATAGGGATGGGAAGCGCTGTTGGCGGCGCGCCCGGACGGGGCGCCCTGCTCCGGCAGCGGAGGCGCGGACGGCTCGGGACGAACATAGGGA

>NZ_CP049791|1|1|2151927-2152037|CRISPRCasFinder
GCGGACGGCTCGGGACGAATATAGGGA	TGGGAAGCGCTGTTGGCGGCGCGCCCGGACGGGGCGCCCTGCTCCGGCAGCGGAGGC
GCGGACGGCTCGGGACGAACATAGGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049791.1\|WP_071623472.1\|2155452_2157198_-\|thiamine-pyrophosphate-binding-protein	unknown	unknown	gnl\|CDD\|181285
NZ_CP049791.1\|WP_071623471.1\|2154918_2155425_-\|RraA-family-protein	unknown	unknown	gnl\|CDD\|236487
NZ_CP049791.1\|WP_071623470.1\|2154512_2154926_-\|gamma-glutamylcyclotransferase	unknown	unknown	gnl\|CDD\|225016
NZ_CP049791.1\|WP_016722048.1\|2164173_2165154_-\|sulfate-ABC-transporter-permease-subunit-CysW	unknown	unknown	gnl\|CDD\|226665
NZ_CP049791.1\|WP_071623473.1\|2159834_2161892_-\|type-III-effector-protein	unknown	unknown	gnl\|CDD\|339245
NZ_CP049791.1\|WP_020371745.1\|2147729_2148164_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NZ_CP049791.1\|WP_071507020.1\|2145602_2146304_-\|haloacid-dehalogenase-type-II	unknown	unknown	gnl\|CDD\|130495
NZ_CP049791.1\|WP_151903999.1\|2149677_2149995_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049791.1\|WP_011001313.1\|2143360_2143831_-\|DUF1857-family-protein	unknown	unknown	gnl\|CDD\|176872
NZ_CP049791.1\|WP_016722033.1\|2141479_2141749_+\|acyl-CoA-binding-protein	unknown	unknown	gnl\|CDD\|226731
NZ_CP049791.1\|WP_011001309.1\|2146723_2147653_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP049791.1\|WP_028852990.1\|2162040_2163024_-\|CysB-family-HTH-type-transcriptional-regulator	unknown	unknown	gnl\|CDD\|237172
NZ_CP049791.1\|WP_165590595.1\|2152469_2154335_-\|GALA-protein	unknown	unknown	gnl\|CDD\|275380
NZ_CP049791.1\|WP_020831875.1\|2157282_2158095_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225818
NZ_CP049791.1\|WP_011001314.1\|2141800_2143264_-\|DHA2-family-efflux-MFS-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|129794
NZ_CP049791.1\|WP_028860519.1\|2148294_2149599_-\|isocitrate-lyase	unknown	unknown	gnl\|CDD\|237893
NZ_CP049791.1\|WP_011001316.1\|2140595_2141327_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	unknown	unknown	gnl\|CDD\|274750
NZ_CP049791.1\|WP_049832877.1\|2143937_2145518_-\|malate-synthase-A	unknown	unknown	gnl\|CDD\|236432
NZ_CP049791.1\|WP_019718111.1\|2159343_2159637_-\|2TM-domain-containing-protein	unknown	unknown	gnl\|CDD\|379083
NZ_CP049791.1\|WP_011001296.1\|2163058_2164177_-\|sulfate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213263

Protein	Function_ID	Function_description	E-value
NZ_CP049791.1\|WP_071623472.1\|2155452_2157198_-\|thiamine-pyrophosphate-binding-protein	gnl\|CDD\|181285	PRK08199, PRK08199, thiamine pyrophosphate protein; Validated.	0
NZ_CP049791.1\|WP_071623471.1\|2154918_2155425_-\|RraA-family-protein	gnl\|CDD\|236487	PRK09372, PRK09372, ribonuclease E inhibitor RraA.	6.66157e-96
NZ_CP049791.1\|WP_011001296.1\|2163058_2164177_-\|sulfate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|213263	cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter. Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	1.25082e-167
NZ_CP049791.1\|WP_016722048.1\|2164173_2165154_-\|sulfate-ABC-transporter-permease-subunit-CysW	gnl\|CDD\|226665	COG4208, CysW, ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism].	4.60094e-163
NZ_CP049791.1\|WP_071623473.1\|2159834_2161892_-\|type-III-effector-protein	gnl\|CDD\|339245	pfam14496, NEL, C-terminal novel E3 ligase, LRR-interacting. This NEL or novel E3 ligase domain is found at the C-terminus of bacterial virulence factors. Its sequence is different from those of the eukaryotic HECT and RING-finger E3 ligases, and it subverts the host ubiquitination process. At the N-terminus of the family-members there is a series of LRR repeats, and the NEL domain interacts with the most N-terminal repeat. The key residue for the ligation step is the cysteine, eg found at position 386 in UniProtKB:E7K2H2. The LRR section sequesters this active site until invasion has occurred.	6.28939e-52
NZ_CP049791.1\|WP_020371745.1\|2147729_2148164_+\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	5.66819e-31
NZ_CP049791.1\|WP_071507020.1\|2145602_2146304_-\|haloacid-dehalogenase-type-II	gnl\|CDD\|130495	TIGR01428, Haloacetate_dehalogenase, 2-haloalkanoic acid dehalogenase, type II. Catalyzes the hydrolytic dehalogenation of small L-2-haloalkanoic acids to yield the corresponding D-2-hydroxyalkanoic acids. Belongs to the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), class (subfamily) I. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.	9.44396e-91
NZ_CP049791.1\|WP_019718111.1\|2159343_2159637_-\|2TM-domain-containing-protein	gnl\|CDD\|379083	pfam13239, 2TM, 2TM domain. This short region contains two transmembrane alpha helices that are found associated with a wide range of other domains. This domain may be involved in cell lysis or peptidoglycan turnover.	3.64655e-14
NZ_CP049791.1\|WP_011001313.1\|2143360_2143831_-\|DUF1857-family-protein	gnl\|CDD\|176872	cd08863, SRPBCC_DUF1857, DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.	2.21381e-54
NZ_CP049791.1\|WP_016722033.1\|2141479_2141749_+\|acyl-CoA-binding-protein	gnl\|CDD\|226731	COG4281, ACB, Acyl-CoA-binding protein [Lipid metabolism].	2.01415e-46
NZ_CP049791.1\|WP_011001309.1\|2146723_2147653_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.22847e-92
NZ_CP049791.1\|WP_028852990.1\|2162040_2163024_-\|CysB-family-HTH-type-transcriptional-regulator	gnl\|CDD\|237172	PRK12683, PRK12683, transcriptional regulator CysB-like protein; Reviewed.	0
NZ_CP049791.1\|WP_165590595.1\|2152469_2154335_-\|GALA-protein	gnl\|CDD\|275380	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily. A leucine-rich repeat (LRR) is a structural protein motif of 20-30 amino acids that is unusually rich in the hydrophobic amino acid leucine. The conserved eleven-residue sequence motif (LxxLxLxxN/CxL) within the LRRs corresponds to the beta-strand and adjacent loop regions, whereas the remaining parts of the repeats are variable. LRRs fold together to form a solenoid protein domain, termed leucine-rich repeat domain. Leucine-rich repeats are usually involved in protein-protein interactions.	3.53175e-34
NZ_CP049791.1\|WP_020831875.1\|2157282_2158095_-\|response-regulator-transcription-factor	gnl\|CDD\|225818	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].	9.38409e-65
NZ_CP049791.1\|WP_011001314.1\|2141800_2143264_-\|DHA2-family-efflux-MFS-transporter-permease-subunit	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	4.46633e-68
NZ_CP049791.1\|WP_028860519.1\|2148294_2149599_-\|isocitrate-lyase	gnl\|CDD\|237893	PRK15063, PRK15063, isocitrate lyase; Provisional.	0
NZ_CP049791.1\|WP_011001316.1\|2140595_2141327_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	gnl\|CDD\|274750	TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification protein YeaZ. This family describes a protein family, YeaZ, now associated with the threonylcarbamoyl adenosine (t6A) tRNA modification. Members of this family may occur as fusions with ygjD (previously gcp) or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI. [Protein synthesis, tRNA and rRNA base modification].	3.2287e-55
NZ_CP049791.1\|WP_071623470.1\|2154512_2154926_-\|gamma-glutamylcyclotransferase	gnl\|CDD\|225016	COG2105, COG2105, Uncharacterized conserved protein [Function unknown].	4.75238e-29
NZ_CP049791.1\|WP_049832877.1\|2143937_2145518_-\|malate-synthase-A	gnl\|CDD\|236432	PRK09255, PRK09255, malate synthase; Validated.	0

>NZ_CP049791.1|WP_151903999.1|2149677_2149995_+|hypothetical-protein
MQGASERFKSYVLYKSVERPGAAQQGEHHCTLKFLFLIFQIDTNTFPYCGKFFPIMKDGHGAAQCAIFADQNIFPHYEKTSATDPHPLTASATAARRFPEKALRM
>NZ_CP049791.1|WP_028860519.1|2148294_2149599_-|isocitrate-lyase
MSRELEVKALQQEWDTNPRWKGIKRGYTAQDVVRLRGSLQIEHTLARRGAEKLWTLMNSEPFVNALGALTGNQAMQQVKAGLKAIYLSGWQVAGDANSNGEMYPDQSLYSVDSVPKVVKRINNTFQRADQIQWSEGKDDVDFFAPIVADAEAGFGGVLNAFELMKAMIEAGAAGVHFEDQLAAVKKCGHMGGKVLVPTREAVSKLVAARLAADVMGVPTVLIARTDAEAADLLTADVDDNDRPFCTGERTVEGFYRTKPGLQQAIARGLAYADYADLVWCETGKPDLEYAKKFAEAIHAKFPGKMLAYNCSPSFNWKKNLDDATIAKFQKELGAMGYKFQFITLAGFHALNYSMFNLAHGYARNQMSAFVELQEAEFAAAEKGFTAVKHQREVGTGYFDAVTQTIERDASTTALKGSTEDEQFFEEKAHAKKVA
>NZ_CP049791.1|WP_020371745.1|2147729_2148164_+|universal-stress-protein
MFQHILIPTDGSELSRKAVAGALDFAKTLGARLTAYTCLEEYPYTPFSEIVVETPQAFKERVEAQARVVLKDVEDTARAAGIDCDTDMSCFAVPYMGIIDAAERHGCDVIFMASHGRRGLAGLLLGSETQKVLTHTAIPVIVYR
>NZ_CP049791.1|WP_011001309.1|2146723_2147653_+|LysR-family-transcriptional-regulator
MAHFKQLETFVAVATRGSLSAAAAAEGVAPAIIGRRIDALEERLGVKLLVRTTRRITLTFEGSAFLEDCQRILNDLHNAEASVSAGGVKASGHLRVTAPAGFGRRHVAPMVPDFLAAHPDVSITLDLGDRIVDLVNEGFDCAIRLGDLPDSSLVSIRLWENRRVVVAAPAYLERRGRPEQLEQLAGHNCLAFGASANVQRGWVFQQGGKTVTVKVGGTMECTDGAVLREWCLQGHGLAWRSWWEVGHDIATGRLVTVLDAFEAPPIGIHAVFPQRKHLPLRVRLLIDFLKNTYGNPAYWRRADPTLLTD
>NZ_CP049791.1|WP_071507020.1|2145602_2146304_-|haloacid-dehalogenase-type-II
MTSIRAVVFDAYGTLFDVYSVAARAEQLFPGKGEALSVLWRDRQIDYTRIRSLAGPSGEHYKPFWDVTVDALRYACARLNLPLGNHAEATLMREYACLSAFPENVPVLRQLREMGLPLGILSNGNPQMLEIAVKSAGMSGLFDHVLSVDAVRLYKTVPAAYALAPRAFGVPAAQILFVSSNGWDACGATWHGFTTFWINRLGHPPEALDVAPAAAGHDMRDLLQFVQARQSMR
>NZ_CP049791.1|WP_049832877.1|2143937_2145518_-|malate-synthase-A
MELTLPQGMEIKAEILPAYEDILTPEALALVARLHRAFEPRRQQLLAERAERVKRLDAGERPDFLPETRHIREGDWTIAPIPPALECRRVEITGPVEAKMVINAFNSGADSYMTDFEDSNAPSWHNQIQGQVNLKAAIRRTLTLESGGKSYKLNDKIATLQVRPRGWHLDEKHVTVDGQRVSGGIFDFALFLFHNAREQLARGAGPFFYLPKMESHLEARLWNDVFIAAQDALGLPRGTIKATVLIETILAAFEMDEILYELREHSAGLNAGRWDYIFSCIKKFKVDQNFCLADRAKVTMTSPFMRAYALLLLKTCHKRNAPAMGGMSALIPIKNDPEKNAVAMQGIINDKKRDATDGYDGGWVAHPGLVEAAMKEFVDVLGDAPNQIGKQRPDVNVAAADLLNFQPEQPITEAGLRMNINVGIHYLGAWLAGNGCVPIHNLMEDAATAEISRSQVWQWIRSPKGTLEDGTKVTAELVRKLIPEELAKVKADGAVGHFDRAAQIFEQMSTSESFSEFLTLPLYEEL
>NZ_CP049791.1|WP_011001313.1|2143360_2143831_-|DUF1857-family-protein
MRFEHLVEVNDPLNPLMDALTLNQIWQGLVLRVLEPTEFVEGLDEGIITARGEGWVERELRFGKARIQDRVTLEPHQRVTYTTAATGEHAGGSLTMTIETNEANAAFIRFVYDTTLPSADETGDTRYAEIVKSAYREADIDTVRRIREFAAIGRLG
>NZ_CP049791.1|WP_011001314.1|2141800_2143264_-|DHA2-family-efflux-MFS-transporter-permease-subunit
MATFTPTLETLRARHGERFKWLVLFTLTVGAVSSIISATIVNVAIPDLSRHFVLGQERAQWVSASFMVAMTLAMLLTPWLLLRFGLRRTFIGALLLLGVGGLVGGLSPTYGVMIAMRVVGGVAAGIMQPLPNILILRVFPEREQGKAFGLFGFGVVLAPALGPSLGGFLVELFGWRSIFFVVVPFTLLGWAMARRFMAINSSMAGEPKPLDWRGLLLVGAATVALLNGLVELHADVTRGVALMAVSAVCLAVFLFWQRRVESPLLDLRLFSYRQFAMGAVVAFIYGAGLYGSTYLLPVYMQVALAYTPSSAGLVLLPPGLALAATIVVAGRLTSRIEPYRLVSFGLAALAVSFLLMTTNTRATGYLLLIGIAAIGRVGLGFVLPSLSLGAMRGVDFTLIPQGSSAVNFLRQLGGAIGVSATGIFLQWRLAARGIGAVGGVAVDPEARIVACDETFVFLGVLCALAVAAAWRMRRREPAAVVSAGVGP
>NZ_CP049791.1|WP_016722033.1|2141479_2141749_+|acyl-CoA-binding-protein
MSDLQTRFEQAQTDVKSLSERPSNMTLLRLYALFKQGSEGDAHGDKPGFTDIVGRYKYEAWAGLKGLSQDDARQKYIDLVEELKSGATT
>NZ_CP049791.1|WP_011001316.1|2140595_2141327_-|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB
MPWILAFDTSTEFCSVALGDGTRTLFRHEHTGARSSSRVLPAAGELLAEAGIALGDCAAIAFGAGPGSFTGLRTACGVAQGLAFGAGLPVVQVNSLMACAEQTRAALPAGTAVTVALDARMDECYWASFVPVAEDASGWHALSAVQVSAPQAVAPPQQPYWLAGNAAAVFGDRLAAATGAAAVLPDVAPHAREIVTLGLRLLAAGHTVRPEDAAPLYVRDKVALTIEERQAVQQAKAAAGARA
>NZ_CP049791.1|WP_165590595.1|2152469_2154335_-|GALA-protein
MVSRIPTGNRGQGNGIEQSASPRATEATPWLGVNLPYGHWLPSSARSVVSRASSLLGGLANFRWGGPSASARSAPNIRSAAIAPAQQTLPPELWQQIATLAGARPRRAMREVSLELRNASRAVVTHLTISDPAMFRQLSLYPALKSVRFKGALTLEALKALPPELEHLEIGRCTGSAISAEGLAHLAAMPLKSLNLNGIEIGVEGARTLAASKSLVSLSLIGCGIGDRAAQALAASRSIRSLDLSVNMIGRDGAQALADAPLVSLNLYSNEIGDDGARALATSRTLTSLEVRRNGIGNAGAGAFANNTVLRKLNLANNMIDKRGARVLAGNTSLTELDLGGNRLGDKGARALAGNRSLLSLKVDHNEISDEGVQALAQHATLRSLDLSFNFVGLQGAGALGGNTRLSELNLSLCGINSYSASALARNKSLASLYLNGNRIGDDGARALAKNSTLTLLDLSRNNIQNAGAEALGGNQALISLKLAGNGIDDDGAAALARHPRLTTLDLSQNRIGSEGARHLAQSVTLAELDLSENRIGPEGAKALSLSTVLTTLKVIDNAIGEDGARALADSTSLISLDARRNGIGEDGAKVLEANTRITGTQQNPNFLAEDVPRPDVRWRD
>NZ_CP049791.1|WP_071623470.1|2154512_2154926_-|gamma-glutamylcyclotransferase
MTEAIHVFAYGTLRAGEANDLRVAASRRGIAEPKLIGHATLHGRLYDFGAYPGLVPDPTGTAVRGDVYRIDPGLVPVLDAIEAVYPGGDALFLRETHTVMLGSEPLDCIVYPVSAAQVTGRHVITSGDWVAYRLARG
>NZ_CP049791.1|WP_071623471.1|2154918_2155425_-|RraA-family-protein
MTTMMIPVTDLCDAHEDRLASGAVRVLAPVFRSFGARAAFAGPAATLKVFEDNGLVRAVLEQPGEGRVLVVDGGGSLRCALVGGNLAKLAEDNGWEGVLVNGCVRDTRELAACNVGVHALAAHPRKSFKKNQGERDIGVQMPGAYIHPGEWIYGDEDGVLVSRERLHD
>NZ_CP049791.1|WP_071623472.1|2155452_2157198_-|thiamine-pyrophosphate-binding-protein
METAVARPVSTGPTDSTGSGSRPVPRHGGQILVDALIAHGTDLAFGVPGESYLAVLEGFYQRRDRARFIVCRQEGGAATMADAHGKLTGRPGIVFCTRGPGATNASIGVHTAFQDSTPLILFIGQVGRDCVDREAFQEIDYRRMFGQMAKWVAQIDSVERIPEYIARAFQTATAGRPGPVVLALPEDMLTEVATVADVPPMPRAMAWPAPHDLARLKALLGRAERPLVLLGGAGWTPQAAARLQAFAERWRLPVGCVFRRQDLFDNRHPNYAGDVGIAINPKLAARVREADVVLAIGTRLGEMATSGYTLFDVPRPRQTLIHVHAGAEELGRVYQADLMIHAAMPAIAEALDGVAPDAPPRWQAWTEAAHADYLANIAPPPFAGRGIDLARAMQWLRERLPRNAILTNGAGNYATWLHRFYQYGPLAAGSRTQLAPTSGAMGYGAPAAVAAKIVCPQTPVICLAGDGCFLMNGQELATAMQYRAPVIFIVVNNGMYGTIRMHQERAYPEHVSGTELRNPDFAALARAYGAEGHTVRSLEGFQAAVEAALAAPVATVIEVQTDPEIISPRATLQSLRAQARG
>NZ_CP049791.1|WP_020831875.1|2157282_2158095_-|response-regulator-transcription-factor
MPIAPRLLIADDEPALADSLIAELAALWPGARIAPAVHDGQSALDAIDRPRAGEAPDVVFLDIRMPGLSGIEVARELAGRAQRPLVVFVTAYDQFALDAFEQAAVDYVLKPVQTERLAATVRRLKARLAERPDGGAAADSAQTLAQLVERLAGLPAAGGANGAYLRFIKALVGQEIRFIPVEEVLYLEATDKYVNVVTHAGASLIRTSLRELLSQLDPQHFWQVHRGTVVNVAHVASAVHLSLGRLALKIRGRTETLPVARQYAHLFRQM
>NZ_CP049791.1|WP_019718111.1|2159343_2159637_-|2TM-domain-containing-protein
MSATTFPASDDAALLHRARRRAGARMGLRIHLLAFLAVNLMLAAMALSHGQSWFVWPLLAWGVGLAAHGLGLAWALGSGYRRLVDRELARLRNQAGR
>NZ_CP049791.1|WP_071623473.1|2159834_2161892_-|type-III-effector-protein
MPTRVPSPTLGRSHPVTGAASTATSTAATATRSGPATAPASGRSREGLLAELPTGRTARTPSVSAAGAHAGRPAWNVQGAIEAMAALSPEREKRLFKKSASPQYRYAKGLTAEQRGQLESALEQRFRNPAAPAEARDSALAMWLSVQQARLRTHTAGHRNHHNLEQFQLAALSVPIPLLALGYRRQRRRYYSSPLRPEYRTAFNNFMRVIGDPSLSEAVRQTVAQRLEYHRRSEETIARHERQLLGEHGVMGLAESGYQIGTNYDHVNLTALEREAVVESRGSGVPPALHIQALQTERSRVESGALRHQWLTRELRDAQARAGQGGAVAGSAGPSSVRQVDAAESSAAAARLRRDTANDIRRLRRPLAAEIKQWLKLAHAEPLPDPKAFDNELYANAFARLLERRRPLSLISYFARWDPVVVDGAKVIQAIAKDANLRKDVFAAAETALGTCGDNVADGFANIVTMVDTHQLVDDVRSGKLDQPALEAWGRQRYRLDSLITEVNQWMASRRRQAGQHSIMTERRVAREPLETMLHAKVALKTVLDLPKNLPSSMRHRLASALKPDDLKRLAETVQAKEADPVELARYLLSNDAWRGAMKALHPAAFAALRKRFAPEKDALAKEIPPQPTDPEGLEFLDERMAYAERTDAFTQKCRAAEDTLLLSLAGRYALVPAVVGAGPSQGSR
>NZ_CP049791.1|WP_028852990.1|2162040_2163024_-|CysB-family-HTH-type-transcriptional-regulator
MNFQQLRSIREAVRRQFNLTEVANALYTSQPGVSRQIRELEDELGVEIFERYGKRLTGLTEPGREIVRIVERLLLEAENLRQAGEEFSGRQSGRLTVATTHTQARYALPKVVQAFRKAYPHVTLALQEASPSHIVELLLTGQADIGVATEAVASEPGLTSFEAYRWRHVLVVSPDHPLTKNPLPALEDVAQYPLITYDAGFTGRRNIDAAFAGAGLQPEIVLTAMDADVIKTYVALDVGVGIIASMAYDGRKDDNLVCIGADHLFEPNTTRVAVRRGAYLRGYAHDFIGMFAPHLSREAVAEAVASTVVAQPARPALVASSRQTLAA
>NZ_CP049791.1|WP_011001296.1|2163058_2164177_-|sulfate-ABC-transporter-ATP-binding-protein
MSIQVQHVTKRFGNFVALDDVSLAFRQGELTALLGPSGCGKTTLLRIIAGLEHADAGTILLNGEDASDRHVRERQVGFVFQHYALFKHMTVFENVAFGLRVKPRAQRPSEAQIRAKVKALLELVQLDWLAERYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRRLHDDLHVTSLFVTHDQEEALEVADSVVLMNRGQVEQVGSPDAVYNTPATPFVYGFLGNVNLFHGRLEAGEGGSVLHVGETALSVPPGGVDASRADQAVAFVRPHEIDLERYAPGAEGIPVTLRRALTLGAVAQLELERTDSDDIIEVSLPIERFRAQGLREGETLVVRPRAIRVFAQGQGSEHAAAAQAAA
>NZ_CP049791.1|WP_016722048.1|2164173_2165154_-|sulfate-ABC-transporter-permease-subunit-CysW
MAATVSRQPGQAPAAARRGATAEAAWVRAALILVSFAFLALFLFVPLASVFYEALRKGLDVYWAALAEPDALSAITLTLSVAAIAVPLNVVFGVAAAWAIAKFEFRGKNLLLTLIDLPFSVSPVIAGLVYVLLFGAQGWFGSALSAHDFKVIFAVPGIVLATVFVTFPFVARELIPLMQAQGSEEEEAAIVLGASGWQTFFRVTLPKIKWGLLYGVILCNARAMGEFGAVSVVSGHIRGLTNTMPLHVEILYNEYDFAAAFAVASLLTLLALVTLALKTLVEWRSRRELADADAGVGEGPGRHAAPQPLSSHPHVRVQSPLEGSAA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP049791_1	1.1\|2151954\|57\|NZ_CP049791\|CRISPRCasFinder	2151954-2152010	57	NZ_CP025986	Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence	1200220-1200276	0	1.0

1. spacer 1.1|2151954|57|NZ_CP049791|CRISPRCasFinder matches to NZ_CP025986 (Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence) position: , mismatch: 0, identity: 1.0

tgggaagcgctgttggcggcgcgcccggacggggcgccctgctccggcagcggaggc	CRISPR spacer
tgggaagcgctgttggcggcgcgcccggacggggcgccctgctccggcagcggaggc	Protospacer
*********************************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

205398 : 270216

Acidithiobacillus_phage(33.33%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016723619.1\|205398_206364_-\|transposase	IS5-like element IS1405 family transposase	A0A077K814	Ralstonia_phage	5.8e-181	100.0
WP_089190541.1\|207727_208672_-	hypothetical protein	NA	NA	NA	NA
WP_089190542.1\|208830_209412_+	hypothetical protein	NA	NA	NA	NA
WP_089190543.1\|209408_209801_+	hypothetical protein	NA	NA	NA	NA
WP_089190544.1\|209797_210643_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_089190545.1\|211283_213011_+	N-6 DNA methylase	Q8V6N5	Halorubrum_phage	2.1e-19	25.1
WP_089190546.1\|213010_213751_+	restriction endonuclease	NA	NA	NA	NA
WP_089190547.1\|213788_214262_-	hypothetical protein	K4I1C7	Acidithiobacillus_phage	1.9e-36	51.7
WP_089190548.1\|214258_214633_-	site-specific recombinase resolvase	K4HZX2	Acidithiobacillus_phage	1.2e-41	64.6
WP_089190549.1\|214629_216018_-	recombinase family protein	K4ICM1	Acidithiobacillus_phage	7.8e-219	82.1
WP_011003058.1\|216014_216464_-	DUF2924 domain-containing protein	K4I3X1	Acidithiobacillus_phage	2.3e-55	71.6
WP_071615542.1\|216463_216655_-	hypothetical protein	NA	NA	NA	NA
WP_064478163.1\|217219_218554_+	cation:dicarboxylase symporter family transporter	NA	NA	NA	NA
WP_064478162.1\|218664_219558_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_064478161.1\|219822_220941_+	pyridoxal-phosphate dependent enzyme	NA	NA	NA	NA
WP_019719001.1\|221121_222309_+	MFS transporter	NA	NA	NA	NA
WP_064478159.1\|222433_223063_+	LysE family translocator	NA	NA	NA	NA
WP_071654053.1\|223176_224001_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_071615590.1\|224026_224362_-	DUF861 domain-containing protein	NA	NA	NA	NA
WP_016725374.1\|224392_225010_-	glutamine amidotransferase	NA	NA	NA	NA
WP_016725375.1\|225046_225490_-	cyanase	NA	NA	NA	NA
WP_071615588.1\|225631_226966_+	PLP-dependent aminotransferase family protein	A0A1X9I5H2	Streptococcus_phage	1.1e-09	21.5
WP_071615587.1\|227286_228651_+	amidohydrolase family protein	NA	NA	NA	NA
WP_087451503.1\|229564_230369_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_016723619.1\|231464_232430_+\|transposase	IS5-like element IS1405 family transposase	A0A077K814	Ralstonia_phage	5.8e-181	100.0
WP_043876768.1\|233085_233886_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_028861115.1\|234064_234643_-	adenylyl-sulfate kinase	A0A2P1ELS9	Moumouvirus	4.5e-19	38.7
WP_089190551.1\|234639_235542_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_089190552.1\|235554_236718_-	glycosyl transferase family 8	NA	NA	NA	NA
WP_028861113.1\|236714_238817_-	sulfotransferase family protein	NA	NA	NA	NA
WP_165590554.1\|238979_242018_-	autotransporter domain-containing protein	NA	NA	NA	NA
WP_011003050.1\|242182_242878_+	response regulator transcription factor	NA	NA	NA	NA
WP_043876677.1\|242943_244875_+	sensor histidine kinase	NA	NA	NA	NA
WP_058908710.1\|245202_246333_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_058908709.1\|246373_247651_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_011003046.1\|247936_248773_+	SAM-dependent methyltransferase	NA	NA	NA	NA
WP_020831502.1\|249265_250594_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_011003045.1\|250647_250851_-	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	2.1e-16	63.6
WP_019718985.1\|251178_251385_+	hypothetical protein	NA	NA	NA	NA
WP_071507821.1\|251972_253151_+	antibiotic hydrolase	NA	NA	NA	NA
WP_011003043.1\|253587_254424_+	cytochrome c	NA	NA	NA	NA
WP_147495255.1\|254653_254860_+	hypothetical protein	NA	NA	NA	NA
WP_071623933.1\|255305_256796_+	hypothetical protein	NA	NA	NA	NA
WP_071623932.1\|256792_257635_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_071507824.1\|257852_259976_-	tryptophan 2-monooxygenase oxidoreductase	NA	NA	NA	NA
WP_011003039.1\|260715_261147_-	hypothetical protein	NA	NA	NA	NA
WP_011003038.1\|262190_262532_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_089190842.1\|262843_263122_+	hypothetical protein	NA	NA	NA	NA
WP_011003036.1\|263121_264270_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011003035.1\|264397_264790_+	hypothetical protein	NA	NA	NA	NA
WP_020832955.1\|265120_266026_+	DUF4123 domain-containing protein	NA	NA	NA	NA
WP_011003033.1\|266079_267459_-	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	1.8e-13	32.4
WP_089190553.1\|267774_268374_+	undecaprenyl-diphosphatase	NA	NA	NA	NA
WP_016724421.1\|268630_269185_+	hypothetical protein	NA	NA	NA	NA
WP_089190843.1\|269256_270216_+\|protease	serine protease	A0A0F6R5W6	Sinorhizobium_phage	1.3e-07	30.0

DBSCAN-SWA_2

758446 : 810701

uncultured_Mediterranean_phage(42.86%)

tRNA,coat,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011002630.1\|758446_759559_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_028853617.1\|759647_761246_+	FMN-binding glutamate synthase family protein	NA	NA	NA	NA
WP_071012186.1\|761271_761880_-	glutathione S-transferase	NA	NA	NA	NA
WP_089190632.1\|762114_763488_+	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	2.9e-109	47.1
WP_020832660.1\|763734_764319_+	cytochrome b	NA	NA	NA	NA
WP_016723720.1\|764419_764986_+	polyisoprenoid-binding protein	NA	NA	NA	NA
WP_028853616.1\|765043_765640_+	polyisoprenoid-binding protein	NA	NA	NA	NA
WP_020831502.1\|765687_767016_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_028853615.1\|767156_768125_-	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	8.8e-44	37.7
WP_089190633.1\|768202_770083_-	protein translocase subunit SecD	NA	NA	NA	NA
WP_063612207.1\|770204_770537_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	4.0e-12	40.2
WP_016723717.1\|770645_771797_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	9.4e-77	42.1
WP_089190634.1\|771790_772879_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_089190635.1\|772955_775148_+	ATP-dependent DNA helicase RecG	NA	NA	NA	NA
WP_016723714.1\|775166_775370_-	hypothetical protein	NA	NA	NA	NA
WP_011002617.1\|775381_775822_-	hypothetical protein	NA	NA	NA	NA
WP_089190637.1\|776363_777494_-	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA
WP_089190849.1\|777636_778578_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_058908278.1\|778768_779992_-	diaminopropionate ammonia-lyase	NA	NA	NA	NA
WP_058908277.1\|780036_781323_-	Zn-dependent hydrolase	NA	NA	NA	NA
WP_020832649.1\|781682_782144_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_058908276.1\|782354_783551_-	amidohydrolase	NA	NA	NA	NA
WP_049832842.1\|784031_785231_-	UDP-glucuronosyltransferase	NA	NA	NA	NA
WP_016723619.1\|785606_786572_+\|transposase	IS5-like element IS1405 family transposase	A0A077K814	Ralstonia_phage	5.8e-181	100.0
WP_111354815.1\|786701_786872_+	hypothetical protein	NA	NA	NA	NA
WP_058908804.1\|787017_787353_+	hypothetical protein	NA	NA	NA	NA
WP_081049995.1\|788396_795872_+	hypothetical protein	NA	NA	NA	NA
WP_162915984.1\|796557_797756_-\|transposase	IS3 family transposase	A0A1B0Z042	Pseudomonas_phage	4.7e-103	64.8
WP_019718280.1\|797855_798173_-	hypothetical protein	NA	NA	NA	NA
WP_020832646.1\|798654_798867_-	hypothetical protein	NA	NA	NA	NA
WP_028853600.1\|798965_799220_-	hypothetical protein	NA	NA	NA	NA
WP_071654020.1\|799302_799533_-	isochorismatase	NA	NA	NA	NA
WP_016723700.1\|799988_800153_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	3.2e-07	57.1
WP_011002610.1\|800598_800925_+	hypothetical protein	NA	NA	NA	NA
WP_011002609.1\|801018_801303_+	hypothetical protein	NA	NA	NA	NA
WP_028853598.1\|801389_801764_+	hypothetical protein	NA	NA	NA	NA
WP_020832642.1\|802386_802524_+	hypothetical protein	NA	NA	NA	NA
WP_011002608.1\|802641_802959_+	hypothetical protein	NA	NA	NA	NA
WP_011002607.1\|803110_803407_+	hypothetical protein	NA	NA	NA	NA
WP_165590582.1\|803503_804364_+	transglutaminase family protein	NA	NA	NA	NA
WP_071615274.1\|804380_804641_-	hypothetical protein	NA	NA	NA	NA
WP_011002605.1\|805986_806490_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_058907884.1\|806539_807043_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_089190639.1\|807161_807881_+	molecular chaperone	NA	NA	NA	NA
WP_058907885.1\|807930_810195_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_011002601.1\|810191_810701_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA

DBSCAN-SWA_3

871322 : 879365

Yellowstone_lake_phycodnavirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011002544.1\|871322_872465_+	molecular chaperone DnaJ	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	2.9e-22	32.7
WP_028860933.1\|872500_874381_+	bifunctional anthranilate synthase component I family protein/class IV aminotransferase	A0A0B5J984	Pandoravirus	4.6e-57	37.4
WP_058907902.1\|874336_875023_-	energy-coupling factor ABC transporter ATP-binding protein	F2Y2R6	Organic_Lake_phycodnavirus	8.8e-14	27.2
WP_011002541.1\|875030_875738_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_011002540.1\|875749_876574_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	1.9e-34	31.3
WP_011002539.1\|876630_877275_-	deoxynucleoside kinase	M1IA15	Paramecium_bursaria_Chlorella_virus	1.7e-06	27.8
WP_003271964.1\|877308_877818_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_020832586.1\|877817_879365_-	polynucleotide adenylyltransferase PcnB	H7BUW3	unidentified_phage	3.6e-23	33.6

DBSCAN-SWA_4

1133247 : 1194467

Ralstonia_phage(63.16%)

capsid,integrase,tRNA,transposase

attL 1136586:1136602|attR 1201385:1201401

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_089190703.1\|1133247_1134528_-\|integrase	site-specific integrase	Q19US1	Mannheimia_phage	9.0e-12	27.0
WP_016722739.1\|1135816_1137133_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	6.1e-96	43.6
1136586:1136602	attL	NA	NA	NA	NA
WP_019718421.1\|1137355_1137946_+	recombinase family protein	A0JC18	Ralstonia_phage	2.1e-101	99.0
WP_019718422.1\|1137972_1138686_+	hypothetical protein	A0JC17	Ralstonia_phage	3.1e-123	94.5
WP_089190704.1\|1138693_1139629_-	Rep protein	A0A097ZIH2	Ralstonia_phage	3.3e-173	99.0
WP_019718425.1\|1140934_1142251_-	zonular occludens toxin	A0JC15	Ralstonia_phage	1.3e-231	92.3
WP_019718426.1\|1142255_1142585_-	DUF2523 domain-containing protein	A0A097ZIJ0	Ralstonia_phage	2.3e-52	99.1
WP_089190705.1\|1142597_1144133_-	hypothetical protein	B5UAS0	Ralstonia_phage	1.2e-215	97.5
WP_015983977.1\|1144208_1144433_-	hypothetical protein	A0JC12	Ralstonia_phage	9.1e-29	100.0
WP_020425224.1\|1144435_1144684_-	hypothetical protein	A0A097ZIG5	Ralstonia_phage	1.7e-39	100.0
WP_019718429.1\|1144686_1144896_-	hypothetical protein	A0A097ZIG2	Ralstonia_phage	9.4e-28	100.0
WP_019718430.1\|1144895_1145105_-	hypothetical protein	A0JC09	Ralstonia_phage	7.7e-22	81.2
WP_158000563.1\|1145104_1145494_-	hypothetical protein	Q6UAZ7	Ralstonia_phage	1.8e-11	41.5
WP_151903991.1\|1145637_1145889_-	hypothetical protein	NA	NA	NA	NA
WP_015983970.1\|1145960_1146287_-	hypothetical protein	A0JC05	Ralstonia_phage	1.7e-52	100.0
WP_071507078.1\|1146918_1148118_+\|integrase	tyrosine-type recombinase/integrase	B7SYF8	Stenotrophomonas_phage	2.2e-92	45.8
WP_019718435.1\|1148409_1148646_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_071507079.1\|1148645_1149761_+	hypothetical protein	NA	NA	NA	NA
WP_071507080.1\|1149753_1151247_+	AAA family ATPase	NA	NA	NA	NA
WP_081365397.1\|1151551_1152178_+	hypothetical protein	NA	NA	NA	NA
WP_089190706.1\|1156368_1156656_+	hypothetical protein	NA	NA	NA	NA
WP_087451503.1\|1156661_1157467_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_165590587.1\|1157705_1158548_-	hypothetical protein	NA	NA	NA	NA
WP_143102306.1\|1158737_1159463_+	hypothetical protein	NA	NA	NA	NA
WP_151903992.1\|1159780_1160674_+	hypothetical protein	NA	NA	NA	NA
WP_071507918.1\|1161201_1161579_-	hypothetical protein	NA	NA	NA	NA
WP_071507917.1\|1161645_1161903_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_071507916.1\|1161906_1162209_-	hypothetical protein	NA	NA	NA	NA
WP_071507915.1\|1162590_1163577_-	hypothetical protein	NA	NA	NA	NA
WP_071507914.1\|1163573_1164488_-\|capsid	phage capsid protein	NA	NA	NA	NA
WP_071507913.1\|1164502_1165501_-	endonuclease	A6XMH8	Bacillus_virus	1.7e-53	39.2
WP_071507912.1\|1165580_1166549_-	DUF932 domain-containing protein	A0A0H4INH5	Stenotrophomonas_phage	1.9e-54	41.0
WP_071653984.1\|1166649_1167000_-	hypothetical protein	NA	NA	NA	NA
WP_143102305.1\|1167243_1167936_-	hypothetical protein	NA	NA	NA	NA
WP_165590625.1\|1168223_1169447_+	hypothetical protein	NA	NA	NA	NA
WP_071507910.1\|1169443_1169926_+	hypothetical protein	NA	NA	NA	NA
WP_071507909.1\|1169922_1171872_+	DUF3732 domain-containing protein	NA	NA	NA	NA
WP_071507908.1\|1171898_1172474_-	hypothetical protein	NA	NA	NA	NA
WP_071507907.1\|1172490_1173306_-	TIGR02391 family protein	A0A1S5SBU1	Streptococcus_phage	1.1e-34	35.2
WP_071653983.1\|1173289_1173583_-	hypothetical protein	NA	NA	NA	NA
WP_081365392.1\|1173598_1174924_-	AAA family ATPase	NA	NA	NA	NA
WP_071653982.1\|1175414_1178189_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_089190709.1\|1179293_1180046_+	DUF1910 domain-containing protein	NA	NA	NA	NA
WP_086005422.1\|1179936_1181087_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	1.7e-94	61.1
WP_020832438.1\|1181147_1181645_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_089190710.1\|1181809_1183237_+	MFS transporter	NA	NA	NA	NA
WP_064477944.1\|1183372_1184938_+	MFS transporter	NA	NA	NA	NA
WP_071507948.1\|1185160_1185535_-	heavy metal-responsive transcriptional regulator	NA	NA	NA	NA
WP_011002246.1\|1185634_1186462_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_064477942.1\|1186481_1186898_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_011002244.1\|1187231_1188191_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_011002243.1\|1188298_1188754_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_071615607.1\|1188877_1189426_+	serine hydrolase family protein	NA	NA	NA	NA
WP_011002241.1\|1189457_1190657_+	MFS transporter	NA	NA	NA	NA
WP_016722750.1\|1190959_1191334_-	hypothetical protein	NA	NA	NA	NA
WP_087451503.1\|1193661_1194467_-\|transposase	IS5 family transposase	NA	NA	NA	NA
1201385:1201401	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2612107 : 2620343

Planktothrix_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011000872.1\|2612107_2613160_-	methionine ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.6e-33	39.4
WP_011000871.1\|2613316_2614240_-	histone deacetylase family protein	A0A2K9KZC4	Tupanvirus	9.3e-43	35.9
WP_058907684.1\|2614357_2615470_+	lytic murein transglycosylase B	NA	NA	NA	NA
WP_011000869.1\|2615550_2616453_-	cysteine synthase CysM	A0A1X9I5K7	Streptococcus_phage	8.2e-52	40.8
WP_011000868.1\|2616556_2616874_-	ComEA family DNA-binding protein	NA	NA	NA	NA
WP_011000867.1\|2617003_2617999_-	ADP-glyceromanno-heptose 6-epimerase	R9S880	Prochlorococcus_phage	4.1e-28	32.3
WP_049842162.1\|2617995_2618943_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	A0A2H4N7X4	Lake_Baikal_phage	9.0e-17	27.6
WP_016723343.1\|2618969_2620343_-	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	1.9e-76	38.9

DBSCAN-SWA_6

2700418 : 2711745

Acidithiobacillus_phage(91.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_087451330.1\|2700418_2700883_-	hypothetical protein	K4ICN3	Acidithiobacillus_phage	3.8e-53	66.9
WP_089190373.1\|2701013_2703302_-	hypothetical protein	K4HZY1	Acidithiobacillus_phage	1.0e-284	62.8
WP_089190374.1\|2703298_2703559_-	DNA-binding protein	K4I1D6	Acidithiobacillus_phage	1.4e-17	76.8
WP_089190375.1\|2703555_2704293_-	hypothetical protein	K4HZA0	Acidithiobacillus_phage	8.3e-111	77.0
WP_028861144.1\|2704292_2704769_-	hypothetical protein	K4I3X7	Acidithiobacillus_phage	8.7e-53	65.0
WP_089190376.1\|2704776_2705418_-	hypothetical protein	K4ICM8	Acidithiobacillus_phage	4.3e-79	71.8
WP_089190377.1\|2705414_2706275_-	ATP-binding protein	K4HZX9	Acidithiobacillus_phage	5.9e-108	71.8
WP_028852742.1\|2706271_2706754_-	hypothetical protein	K4HZ96	Acidithiobacillus_phage	5.2e-45	58.7
WP_089190378.1\|2706764_2707028_-	DNA-binding protein	K4I3X3	Acidithiobacillus_phage	5.3e-20	69.3
WP_089190379.1\|2707256_2707718_+	helix-turn-helix domain-containing protein	K4ICM4	Acidithiobacillus_phage	8.4e-45	61.4
WP_089190380.1\|2707767_2710005_+	hypothetical protein	K4I1D0	Acidithiobacillus_phage	4.7e-290	66.3
WP_023470373.1\|2710761_2711745_+	ATP-binding protein	R4TQL5	Phaeocystis_globosa_virus	5.1e-15	27.7

DBSCAN-SWA_7

2743997 : 2905325

160

Acidithiobacillus_phage(29.69%)

transposase,terminase,capsid,head,tail,portal,integrase,tRNA

attL 2765790:2765849|attR 2845761:2845898

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020831502.1\|2743997_2745326_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_089190387.1\|2745322_2745643_+	DUF1484 domain-containing protein	NA	NA	NA	NA
WP_058908403.1\|2745690_2745987_-	hypothetical protein	NA	NA	NA	NA
WP_089190388.1\|2746054_2746516_-	lysozyme	K4I410	Acidithiobacillus_phage	3.0e-66	81.6
WP_020832987.1\|2746512_2746989_-	hypothetical protein	K4ICR8	Acidithiobacillus_phage	1.4e-71	85.9
WP_003270772.1\|2746985_2747276_-	membrane protein	K4I011	Acidithiobacillus_phage	3.1e-13	47.6
WP_089190389.1\|2747343_2747568_-	hypothetical protein	NA	NA	NA	NA
WP_089191137.1\|2747577_2749422_-	hypothetical protein	A0A0M4UKC5	Ralstonia_phage	1.4e-106	45.7
WP_058908398.1\|2749426_2749825_-	hypothetical protein	NA	NA	NA	NA
WP_089190390.1\|2749821_2750304_-	hypothetical protein	A0A0M4TU90	Ralstonia_phage	1.5e-12	42.7
WP_089190391.1\|2750307_2751474_-	hypothetical protein	NA	NA	NA	NA
WP_111395595.1\|2751485_2755076_-	hypothetical protein	A0A0M4U447	Ralstonia_phage	0.0e+00	53.6
WP_089190392.1\|2755076_2755472_-	hypothetical protein	A0A0M4UTA7	Ralstonia_phage	9.2e-32	52.3
WP_089190393.1\|2755477_2759581_-\|tail	phage tail tape measure protein	V9QL83	Rhizobium_phage	3.9e-24	36.2
WP_071895622.1\|2759646_2760774_-	DNA cytosine methyltransferase	Q6J1P4	Burkholderia_virus	9.1e-101	54.6
WP_016723619.1\|2762745_2763711_-\|transposase	IS5-like element IS1405 family transposase	A0A077K814	Ralstonia_phage	5.8e-181	100.0
WP_058908874.1\|2764213_2764504_+	H-NS histone family protein	NA	NA	NA	NA
WP_089190854.1\|2764546_2765191_-	hypothetical protein	NA	NA	NA	NA
WP_089190855.1\|2765165_2765387_-	hypothetical protein	NA	NA	NA	NA
WP_089190856.1\|2765383_2765773_-	hypothetical protein	NA	NA	NA	NA
2765790:2765849	attL	NA	NA	NA	NA
WP_028854752.1\|2765927_2766947_-\|integrase	tyrosine-type recombinase/integrase	A0A2L1IV36	Escherichia_phage	4.2e-12	31.9
WP_081365216.1\|2766943_2767846_-\|integrase	tyrosine-type recombinase/integrase	A0A2P1A0S4	Gordonia_phage	1.5e-05	30.1
WP_081365215.1\|2767842_2769090_-\|integrase	tyrosine-type recombinase/integrase	A0A142K7N4	Mycobacterium_phage	2.2e-15	27.6
WP_165590598.1\|2769234_2770020_-	hypothetical protein	A0A2D2W2E0	Stenotrophomonas_phage	4.5e-46	42.8
WP_089190858.1\|2770120_2770567_-	hypothetical protein	NA	NA	NA	NA
WP_089190859.1\|2770572_2770875_-	hypothetical protein	NA	NA	NA	NA
WP_089190860.1\|2770877_2771882_-\|capsid	major capsid protein	A0A1B2LRS0	Wolbachia_phage	3.6e-109	66.3
WP_165590600.1\|2771888_2772266_-\|head	head decoration protein	A0A1B2LRT0	Wolbachia_phage	1.0e-24	49.6
WP_089190862.1\|2772275_2773535_-	S49 family peptidase	K4HZZ6	Acidithiobacillus_phage	2.9e-63	44.9
WP_089190863.1\|2773544_2775092_-\|portal	phage portal protein	A0A1B2LRR5	Wolbachia_phage	9.5e-149	57.1
WP_028852764.1\|2775091_2775313_-	hypothetical protein	A0A2H4JCJ9	uncultured_Caudovirales_phage	4.5e-12	57.5
WP_089190864.1\|2775313_2775706_-	hypothetical protein	NA	NA	NA	NA
WP_019717735.1\|2775716_2776226_-	hypothetical protein	A0A0F6WCR7	Sinorhizobium_phage	9.7e-26	45.6
WP_089191138.1\|2776269_2778249_-\|terminase	phage terminase large subunit family protein	A0A2H4JIC6	uncultured_Caudovirales_phage	0.0e+00	86.2
WP_089190866.1\|2778251_2778788_-	elements of external origin	A0A2H4JCL4	uncultured_Caudovirales_phage	5.0e-73	82.0
WP_089190867.1\|2778873_2779095_+	hypothetical protein	NA	NA	NA	NA
WP_089191139.1\|2779147_2779486_+	hypothetical protein	NA	NA	NA	NA
WP_089190868.1\|2779591_2780104_+	DUF3489 domain-containing protein	A0A2H4JE21	uncultured_Caudovirales_phage	1.0e-22	69.9
WP_089190869.1\|2780357_2780546_+	hypothetical protein	K4HZY7	Acidithiobacillus_phage	1.0e-12	64.2
WP_089190870.1\|2780770_2781136_+	hypothetical protein	A0A2H4JI44	uncultured_Caudovirales_phage	1.0e-32	58.0
WP_043876561.1\|2781238_2781484_+	hypothetical protein	NA	NA	NA	NA
WP_089190871.1\|2781443_2782679_-	site-specific DNA-methyltransferase	A0A2H4JGF1	uncultured_Caudovirales_phage	2.5e-192	81.0
WP_071893036.1\|2782675_2784076_-	site-specific DNA-methyltransferase	K4I3Y2	Acidithiobacillus_phage	1.3e-165	62.8
WP_016723619.1\|2784493_2785459_+\|transposase	IS5-like element IS1405 family transposase	A0A077K814	Ralstonia_phage	5.8e-181	100.0
WP_089190872.1\|2785650_2786058_-	hypothetical protein	NA	NA	NA	NA
WP_011000793.1\|2786047_2786260_-	hypothetical protein	NA	NA	NA	NA
WP_089190873.1\|2786491_2788789_-	hypothetical protein	K4HZY1	Acidithiobacillus_phage	1.6e-293	64.9
WP_089190874.1\|2788772_2789171_-	hypothetical protein	NA	NA	NA	NA
WP_165590601.1\|2789176_2789644_-	hypothetical protein	K4I3X7	Acidithiobacillus_phage	1.6e-38	53.9
WP_019717722.1\|2789653_2790286_-	hypothetical protein	K4ICM8	Acidithiobacillus_phage	3.6e-62	67.5
WP_089190876.1\|2790304_2791177_-	ATP-binding protein	K4HZX9	Acidithiobacillus_phage	1.4e-101	66.1
WP_089190877.1\|2791173_2791671_-	hypothetical protein	NA	NA	NA	NA
WP_071895677.1\|2791667_2791958_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_072633697.1\|2792792_2793404_+	hypothetical protein	NA	NA	NA	NA
WP_072633696.1\|2793429_2794638_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_016725383.1\|2794768_2794990_-	hypothetical protein	NA	NA	NA	NA
WP_071895671.1\|2795107_2796082_-	hypothetical protein	NA	NA	NA	NA
WP_165590629.1\|2796078_2797308_-	glycine hydroxymethyltransferase	NA	NA	NA	NA
WP_016724989.1\|2798013_2799036_+	patatin-like phospholipase family protein	A0A1B2LRS3	Wolbachia_phage	2.0e-17	31.0
WP_016724988.1\|2799035_2800214_+	hypothetical protein	NA	NA	NA	NA
WP_089190878.1\|2800218_2801898_+	hypothetical protein	NA	NA	NA	NA
WP_071895667.1\|2801882_2802377_+	hypothetical protein	NA	NA	NA	NA
WP_028861250.1\|2803025_2803523_+	DUF2924 domain-containing protein	K4I3X1	Acidithiobacillus_phage	5.4e-21	39.5
WP_071895663.1\|2803519_2804893_+	recombinase family protein	K4ICM1	Acidithiobacillus_phage	5.0e-133	56.3
WP_080606476.1\|2804925_2805366_+	LacI family transcriptional regulator	NA	NA	NA	NA
WP_016725380.1\|2806263_2806770_-	chromate resistance protein	NA	NA	NA	NA
WP_011003856.1\|2806823_2808029_-	chromate transporter	NA	NA	NA	NA
WP_058908689.1\|2808047_2809019_-	hypothetical protein	NA	NA	NA	NA
WP_011003854.1\|2809151_2809424_-	metal/formaldehyde-sensitive transcriptional repressor	NA	NA	NA	NA
WP_058908690.1\|2809525_2810659_+	nickel/cobalt efflux protein RcnA	NA	NA	NA	NA
WP_058908691.1\|2810951_2812319_-	amidohydrolase family protein	NA	NA	NA	NA
WP_058908692.1\|2812986_2814756_-	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
WP_071615653.1\|2814798_2815320_-	hypothetical protein	NA	NA	NA	NA
WP_058908861.1\|2816256_2816769_-	hypothetical protein	NA	NA	NA	NA
WP_071615636.1\|2816799_2817300_-	hypothetical protein	NA	NA	NA	NA
WP_058908860.1\|2817378_2817879_-	hypothetical protein	NA	NA	NA	NA
WP_089190880.1\|2817884_2828540_-	filamentous hemagglutinin N-terminal domain-containing protein	A0A0R6PJK4	Moraxella_phage	1.0e-36	36.3
WP_081365362.1\|2828915_2829863_+	HrgA protein	NA	NA	NA	NA
WP_071624179.1\|2830315_2830654_+	DUF1484 domain-containing protein	NA	NA	NA	NA
WP_155772883.1\|2830724_2831096_+	hypothetical protein	NA	NA	NA	NA
WP_072633620.1\|2831115_2832060_-	hypothetical protein	NA	NA	NA	NA
WP_071507983.1\|2833116_2833356_-	hypothetical protein	NA	NA	NA	NA
WP_049800424.1\|2834072_2834789_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_071624182.1\|2835463_2835679_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA
WP_071615547.1\|2836075_2836291_+	hypothetical protein	NA	NA	NA	NA
WP_049800423.1\|2837273_2838149_+	hypothetical protein	NA	NA	NA	NA
WP_019717749.1\|2838423_2838675_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_016727753.1\|2838671_2839085_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_020425162.1\|2839156_2840179_-	DNA cytosine methyltransferase	Q6J1P4	Burkholderia_virus	1.2e-104	58.0
WP_089190399.1\|2840802_2841090_+	H-NS histone family protein	NA	NA	NA	NA
WP_089190400.1\|2841132_2841777_-	hypothetical protein	NA	NA	NA	NA
WP_089190401.1\|2841751_2841973_-	hypothetical protein	NA	NA	NA	NA
WP_089190402.1\|2841969_2842359_-	hypothetical protein	NA	NA	NA	NA
WP_081365215.1\|2842519_2843767_+\|integrase	tyrosine-type recombinase/integrase	A0A142K7N4	Mycobacterium_phage	2.2e-15	27.6
WP_081365216.1\|2843763_2844666_+\|integrase	tyrosine-type recombinase/integrase	A0A2P1A0S4	Gordonia_phage	1.5e-05	30.1
WP_028854752.1\|2844662_2845682_+\|integrase	tyrosine-type recombinase/integrase	A0A2L1IV36	Escherichia_phage	4.2e-12	31.9
WP_089190403.1\|2845820_2846606_-	hypothetical protein	A0A2D2W2E0	Stenotrophomonas_phage	4.0e-47	43.8
2845761:2845898	attR	NA	NA	NA	NA
WP_089190404.1\|2846728_2847175_-	hypothetical protein	NA	NA	NA	NA
WP_089190405.1\|2847180_2847483_-	hypothetical protein	NA	NA	NA	NA
WP_089190406.1\|2847485_2848490_-\|capsid	major capsid protein	A0A1B2LRS0	Wolbachia_phage	3.3e-110	66.9
WP_058908383.1\|2848496_2848874_-\|head	head decoration protein	A0A1B2LRT0	Wolbachia_phage	1.8e-24	48.8
WP_089190407.1\|2848883_2850143_-	S49 family peptidase	K4HZZ6	Acidithiobacillus_phage	7.1e-62	43.7
WP_089190408.1\|2850152_2851691_-\|portal	phage portal protein	A0A1B2LRR5	Wolbachia_phage	9.1e-152	57.9
WP_016725356.1\|2851690_2851912_-	hypothetical protein	A0A2H4JCJ9	uncultured_Caudovirales_phage	1.3e-11	57.5
WP_089190409.1\|2851912_2852305_-	hypothetical protein	NA	NA	NA	NA
WP_089190410.1\|2852315_2852825_-	hypothetical protein	A0A0F6WCR7	Sinorhizobium_phage	3.7e-25	45.0
WP_089190411.1\|2852868_2854851_-\|terminase	phage terminase large subunit family protein	A0A2H4JIC6	uncultured_Caudovirales_phage	0.0e+00	86.0
WP_089190412.1\|2854850_2855387_-	elements of external origin	A0A2H4JCL4	uncultured_Caudovirales_phage	2.2e-73	80.9
WP_089190413.1\|2855484_2855745_+	hypothetical protein	NA	NA	NA	NA
WP_165590603.1\|2855851_2856367_+	DUF3489 domain-containing protein	A0A2H4JE21	uncultured_Caudovirales_phage	3.9e-22	67.5
WP_016726852.1\|2856488_2856677_+	hypothetical protein	K4HZY7	Acidithiobacillus_phage	1.2e-13	66.0
WP_089190415.1\|2856831_2857200_-	hypothetical protein	A0A2H4JI44	uncultured_Caudovirales_phage	8.6e-16	45.3
WP_089190416.1\|2857365_2857731_+	hypothetical protein	A0A2H4JI44	uncultured_Caudovirales_phage	2.7e-30	57.1
WP_089190417.1\|2857773_2858994_-	site-specific DNA-methyltransferase	A0A2H4JGF1	uncultured_Caudovirales_phage	8.4e-193	81.2
WP_089190418.1\|2858990_2860394_-	site-specific DNA-methyltransferase	K4I3Y2	Acidithiobacillus_phage	1.7e-165	61.7
WP_058908894.1\|2860791_2861199_-	hypothetical protein	NA	NA	NA	NA
WP_016727896.1\|2861188_2861398_-	hypothetical protein	NA	NA	NA	NA
WP_064047862.1\|2861632_2863930_-	hypothetical protein	K4HZY1	Acidithiobacillus_phage	0.0e+00	72.1
WP_021156153.1\|2863913_2864303_-	hypothetical protein	NA	NA	NA	NA
WP_043885810.1\|2864308_2864776_-	hypothetical protein	K4I3X7	Acidithiobacillus_phage	4.5e-38	53.5
WP_021156152.1\|2864785_2865418_-	hypothetical protein	K4ICM8	Acidithiobacillus_phage	8.0e-62	67.5
WP_021156151.1\|2865435_2866308_-	ATP-binding protein	K4HZX9	Acidithiobacillus_phage	2.4e-101	65.7
WP_021156150.1\|2866304_2866802_-	hypothetical protein	NA	NA	NA	NA
WP_021156149.1\|2866798_2867083_-	hypothetical protein	NA	NA	NA	NA
WP_016724993.1\|2867504_2868110_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_003274149.1\|2868264_2869077_+	oxidoreductase	NA	NA	NA	NA
WP_016724992.1\|2869286_2870288_+	NADP-dependent oxidoreductase	NA	NA	NA	NA
WP_058908754.1\|2870716_2871691_-	hypothetical protein	NA	NA	NA	NA
WP_043885812.1\|2871687_2872911_-	hypothetical protein	NA	NA	NA	NA
WP_151903962.1\|2873609_2874641_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	3.3e-81	47.9
WP_089190420.1\|2874640_2875450_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	8.6e-77	56.2
WP_087451503.1\|2877549_2878354_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_161495326.1\|2879177_2879354_+	hypothetical protein	NA	NA	NA	NA
WP_089190421.1\|2879414_2879792_+\|transposase	transposase	U5P4I9	Shigella_phage	6.7e-16	57.5
WP_089190422.1\|2879918_2880962_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_162496212.1\|2882172_2882316_-	hypothetical protein	NA	NA	NA	NA
WP_089190423.1\|2882338_2883067_-	nitroreductase family protein	NA	NA	NA	NA
WP_089190827.1\|2883200_2883800_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_089190828.1\|2884019_2884235_+	hypothetical protein	NA	NA	NA	NA
WP_165590604.1\|2884249_2885056_-	endoglucanase	NA	NA	NA	NA
WP_151903963.1\|2885152_2885449_-	hypothetical protein	NA	NA	NA	NA
WP_089190424.1\|2885459_2886080_-	glutathione transferase GstA	NA	NA	NA	NA
WP_016727152.1\|2886532_2886931_-	hypothetical protein	NA	NA	NA	NA
WP_028860303.1\|2887319_2887952_+	LysE family translocator	NA	NA	NA	NA
WP_089190425.1\|2888023_2889274_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA
WP_089190426.1\|2889284_2889656_+	cytochrome c	NA	NA	NA	NA
WP_003263554.1\|2889669_2889897_-	sulfurtransferase TusA family protein	NA	NA	NA	NA
WP_028852733.1\|2889936_2890518_-	NUDIX hydrolase	NA	NA	NA	NA
WP_011000762.1\|2890536_2891574_-	low specificity L-threonine aldolase	NA	NA	NA	NA
WP_089190427.1\|2891626_2891815_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA
WP_089190428.1\|2891827_2892577_-	class II aldolase/adducin family protein	NA	NA	NA	NA
WP_089190829.1\|2892659_2893880_-	MFS transporter	NA	NA	NA	NA
WP_089190429.1\|2893988_2894897_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011000757.1\|2894971_2896384_+	nodulation protein NfeD	NA	NA	NA	NA
WP_089190430.1\|2896395_2897145_+	slipin family protein	J3IZE5	Acanthamoeba_polyphaga_lentillevirus	8.7e-23	31.1
WP_020831461.1\|2897154_2897865_-	hypothetical protein	NA	NA	NA	NA
WP_058908211.1\|2897891_2900000_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_011000753.1\|2900237_2901278_-	hypothetical protein	NA	NA	NA	NA
WP_021155849.1\|2901274_2902381_-	purine nucleoside permease	NA	NA	NA	NA
WP_011000751.1\|2902670_2905325_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	1.0e-78	37.7

DBSCAN-SWA_8

3296539 : 3331087

Leptospira_phage(33.33%)

integrase,transposase

attL 3287551:3287568|attR 3336319:3336336

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3287551:3287568	attL	NA	NA	NA	NA
WP_020831186.1\|3296539_3296872_-\|transposase	transposase	NA	NA	NA	NA
WP_089190463.1\|3298548_3300135_-\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	1.3e-73	36.2
WP_151904000.1\|3300167_3300497_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	2.2e-18	44.2
WP_089190832.1\|3300517_3300994_-\|transposase	transposase	NA	NA	NA	NA
WP_089190833.1\|3302022_3303303_-	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA
WP_151903964.1\|3303416_3304514_-	hypothetical protein	NA	NA	NA	NA
WP_165590632.1\|3304667_3304964_-	hypothetical protein	NA	NA	NA	NA
WP_161495330.1\|3305201_3306245_+	hypothetical protein	NA	NA	NA	NA
WP_089190420.1\|3306655_3307465_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	8.6e-77	56.2
WP_151903962.1\|3307464_3308496_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	3.3e-81	47.9
WP_165590608.1\|3308568_3308865_+	hypothetical protein	NA	NA	NA	NA
WP_087451503.1\|3308814_3309620_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_165590609.1\|3309693_3310872_+	ATP-binding protein	Q8W6N3	Burkholderia_virus	2.7e-87	44.5
WP_151903965.1\|3311414_3312776_-	hypothetical protein	NA	NA	NA	NA
WP_089190469.1\|3312785_3312986_-	hypothetical protein	NA	NA	NA	NA
WP_165590610.1\|3313043_3314708_-	hypothetical protein	A0A1B1ISV2	uncultured_Mediterranean_phage	4.6e-08	24.0
WP_151903966.1\|3314794_3315208_-	hypothetical protein	NA	NA	NA	NA
WP_089190472.1\|3315197_3316340_-	hypothetical protein	NA	NA	NA	NA
WP_089190473.1\|3316667_3317270_-	hypothetical protein	NA	NA	NA	NA
WP_162496214.1\|3317269_3317992_-	hypothetical protein	NA	NA	NA	NA
WP_165590611.1\|3318308_3324743_+	hypothetical protein	NA	NA	NA	NA
WP_151903969.1\|3324771_3325410_+	hypothetical protein	NA	NA	NA	NA
WP_013213591.1\|3326315_3326543_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_151903970.1\|3327783_3329838_-	hypothetical protein	NA	NA	NA	NA
WP_165596702.1\|3329830_3331087_-\|integrase	phage integrase family protein	NA	NA	NA	NA
3336319:3336336	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP049792

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP049791

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection