CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NZ_CP049816	Monaibacterium sp. ALG8 plasmid unnamed5, complete sequence	2 crisprs	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	0	14	0
NZ_CP049814	Monaibacterium sp. ALG8 plasmid unnamed3, complete sequence	0 crisprs	NA	0	0	1
NZ_CP049812	Monaibacterium sp. ALG8 plasmid unnamed1, complete sequence	0 crisprs	NA	0	0	0
NZ_CP049815	Monaibacterium sp. ALG8 plasmid unnamed4, complete sequence	1 crisprs	csa3	0	1	0
NZ_CP049817	Monaibacterium sp. ALG8 plasmid unnamed6, complete sequence	0 crisprs	NA	0	0	0
NZ_CP049813	Monaibacterium sp. ALG8 plasmid unnamed2, complete sequence	0 crisprs	NA	0	0	0
NZ_CP049811	Monaibacterium sp. ALG8 chromosome, complete genome	1 crisprs	DEDDh,cas3,csa3,cas2,cas1,cas4,cas7,cas8c,cas5	1	19	4

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP049815_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049815_1

128656-128744

Orphan

Consensus_repeat	Method
GCATCATGCCCATCATCCCGCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP049815_1

>merge|NZ_CP049815|1|128656-128744|CRISPRCasFinder
GCATCATGCCCATCATCCCGCCGCCCATCATGCCTCCACGCGGCTCCAGGCCCATCTCTCGCTCCACCATCATGCCCATCATCCCGCCG

>NZ_CP049815|1|1|128656-128744|CRISPRCasFinder
GCATCATGCCCATCATCCCGCCG	CCCATCATGCCTCCACGCGGCTCCAGGCCCATCTCTCGCTCCA
CCATCATGCCCATCATCCCGCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049815.1\|WP_166195284.1\|123118_123760_-\|SCO-family-protein	unknown	unknown	gnl\|CDD\|376869
NZ_CP049815.1\|WP_166195328.1\|137987_139337_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224169
NZ_CP049815.1\|WP_166195316.1\|130784_133337_-\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|240602
NZ_CP049815.1\|WP_166195378.1\|127361_128123_-\|exo-alpha-sialidase	unknown	unknown	gnl\|CDD\|271234
NZ_CP049815.1\|WP_166195322.1\|136112_136472_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049815.1\|WP_166195331.1\|139798_140104_-\|periplasmic-mercury-ion-binding-protein	unknown	unknown	gnl\|CDD\|131107
NZ_CP049815.1\|WP_166195381.1\|139350_139752_-\|mercury-resistance-system-transport-protein-MerF	unknown	unknown	gnl\|CDD\|371528
NZ_CP049815.1\|WP_166195304.1\|126852_127350_-\|metal-binding-protein	unknown	unknown	gnl\|CDD\|225564
NZ_CP049815.1\|WP_166195310.1\|129910_130249_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049815.1\|WP_166195293.1\|124874_125147_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049815.1\|WP_166195287.1\|123749_124505_-\|DsbA-family-protein	unknown	unknown	gnl\|CDD\|239321
NZ_CP049815.1\|WP_166195384.1\|140116_140488_-\|mercury-transporter	unknown	unknown	gnl\|CDD\|184301
NZ_CP049815.1\|WP_166195301.1\|126237_126723_-\|cytochrome-c	unknown	unknown	gnl\|CDD\|365823
NZ_CP049815.1\|WP_166195296.1\|125150_125675_-\|TlpA-family-protein-disulfide-reductase	unknown	unknown	gnl\|CDD\|239264
NZ_CP049815.1\|WP_166195313.1\|130258_130696_-\|Cu(I)-responsive-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133383
NZ_CP049815.1\|WP_166195319.1\|133664_135980_+\|heavy-metal-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319783
NZ_CP049815.1\|WP_166195298.1\|125671_126241_-\|DsbE-family-thiol:disulfide-interchange-protein	unknown	unknown	gnl\|CDD\|239308
NZ_CP049815.1\|WP_166195325.1\|136476_137928_-\|mercury(II)-reductase	unknown	unknown	gnl\|CDD\|273944
NZ_CP049815.1\|WP_166195281.1\|122657_123101_-\|copper-chaperone-PCu(A)C	unknown	unknown	gnl\|CDD\|377298
NZ_CP049815.1\|WP_166195290.1\|124557_124839_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP049815.1\|WP_166195284.1\|123118_123760_-\|SCO-family-protein	gnl\|CDD\|376869	pfam02630, SCO1-SenC, SCO1/SenC. This family is involved in biogenesis of respiratory and photosynthetic systems. SCO1 is required for a post-translational step in the accumulation of subunits COXI and COXII of cytochrome c oxidase. SenC is required for optimal cytochrome c oxidase activity and maximal induction of genes encoding the light-harvesting and reaction centre complexes of R. capsulatus.	7.67164e-66
NZ_CP049815.1\|WP_166195328.1\|137987_139337_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224169	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion].	2.26043e-139
NZ_CP049815.1\|WP_166195316.1\|130784_133337_-\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|240602	cd12919, VKOR_2, Vitamin K epoxide reductase family in bacteria. This family includes vitamin K epoxide reductase (VKOR) present only in bacteria. VKOR (also named VKORC1) is an integral membrane protein that catalyzes the reduction of vitamin K 2,3-epoxide and vitamin K to vitamin K hydroquinone, an essential co-factor subsequently used in the gamma-carboxylation of glutamic acid residues in blood coagulation enzymes. All homologs of VKOR contain an active site CXXC motif, which is switched between reduced and disulfide-bonded states during the reaction cycle. In some bacterial homologs, the VKOR domain is fused with domains of the thioredoxin family of oxidoreductases which may function as redox partners in initiating the reduction cascade.	1.55002e-85
NZ_CP049815.1\|WP_166195378.1\|127361_128123_-\|exo-alpha-sialidase	gnl\|CDD\|271234	cd15482, Sialidase_non-viral, Non-viral sialidases. Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates, they play vital roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial and eukaryotic sialidases.	0.00461225
NZ_CP049815.1\|WP_166195331.1\|139798_140104_-\|periplasmic-mercury-ion-binding-protein	gnl\|CDD\|131107	TIGR02052, periplasmic_mercuric_ion_binding_protein, mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403). [Cellular processes, Detoxification].	3.84612e-09
NZ_CP049815.1\|WP_166195381.1\|139350_139752_-\|mercury-resistance-system-transport-protein-MerF	gnl\|CDD\|371528	pfam11431, Transport_MerF, Membrane transport protein MerF. The mercury transport membrane protein, MerF has a core helix-loop-helix domain. It has two vicinal pairs of cysteine residues which are involved in the transport of Hg(II) across the membrane and are exposed to the cytoplasm.	2.25695e-07
NZ_CP049815.1\|WP_166195304.1\|126852_127350_-\|metal-binding-protein	gnl\|CDD\|225564	COG3019, COG3019, Predicted metal-binding protein [General function prediction only].	2.42841e-38
NZ_CP049815.1\|WP_166195287.1\|123749_124505_-\|DsbA-family-protein	gnl\|CDD\|239321	cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.	4.34669e-68
NZ_CP049815.1\|WP_166195384.1\|140116_140488_-\|mercury-transporter	gnl\|CDD\|184301	PRK13751, PRK13751, putative mercuric transport protein; Provisional.	9.59989e-17
NZ_CP049815.1\|WP_166195301.1\|126237_126723_-\|cytochrome-c	gnl\|CDD\|365823	pfam00034, Cytochrom_C, Cytochrome c. The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.	1.24014e-15
NZ_CP049815.1\|WP_166195296.1\|125150_125675_-\|TlpA-family-protein-disulfide-reductase	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	9.6763e-38
NZ_CP049815.1\|WP_166195313.1\|130258_130696_-\|Cu(I)-responsive-transcriptional-regulator	gnl\|CDD\|133383	cd01108, HTH_CueR, Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators. Helix-turn-helix (HTH) transcription regulators CueR and ActP, copper efflux regulators. In Bacillus subtilis, copper induced CueR regulates the copZA operon, preventing copper toxicity. In Rhizobium leguminosarum, ActP controls copper homeostasis; it detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations. These proteins are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have two conserved cysteines that define a monovalent copper ion binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.	3.05122e-67
NZ_CP049815.1\|WP_166195319.1\|133664_135980_+\|heavy-metal-translocating-P-type-ATPase	gnl\|CDD\|319783	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B. The mammalian copper-transporting P-type ATPases, ATP7A and ATP7B are key molecules required for the regulation and maintenance of copper homeostasis. Menkes and Wilson diseases are caused by mutation in ATP7A and ATP7B respectively. This subfamily includes other copper-transporting ATPases such as: Bacillus subtilis CopA , Archeaoglobus fulgidus CopA, and Saccharomyces cerevisiae Ccc2p. This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NZ_CP049815.1\|WP_166195298.1\|125671_126241_-\|DsbE-family-thiol:disulfide-interchange-protein	gnl\|CDD\|239308	cd03010, TlpA_like_DsbE, TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.	7.43533e-68
NZ_CP049815.1\|WP_166195325.1\|136476_137928_-\|mercury(II)-reductase	gnl\|CDD\|273944	TIGR02053, Mercuric_reductase, mercury(II) reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH. [Cellular processes, Detoxification].	5.51188e-152
NZ_CP049815.1\|WP_166195281.1\|122657_123101_-\|copper-chaperone-PCu(A)C	gnl\|CDD\|377298	pfam04314, PCuAC, Copper chaperone PCu(A)C. PCu(A)C is a periplasmic copper chaperone. Its role may be to capture and transfer copper to two other copper chaperones, PrrC and Cox11, which in turn deliver Cu(I) to cytochrome c oxidase.	1.41645e-34

>NZ_CP049815.1|WP_166195378.1|127361_128123_-|exo-alpha-sialidase
MRASPDGGRSWHDRPTPSPVSSIATHPARPGRLLAGLARGGVAVSGDGGSSWTTRSDGLASGEVTALAVAAGTPDMIYAAIRGDGLWKSEDAGASWALAMDRPWLDAAERDPLTLASVDLDTGMGGIWIYAGTEKGLTRVPDCFCRWQDVQPGNAMDALVAGDAPPAEAPLPTGEPVLSLASALTAPSKLYAALPSGVWASQDGGVVWTHKAEGQGRAVALHPRDENHVAAILDGTLRLSRDGGATWTAITVA
>NZ_CP049815.1|WP_166195304.1|126852_127350_-|metal-binding-protein
MNRRIFLASLAALGVGGTFTFTTLTSAQSTEHATGPASSDTEGGSKQITIWRDPGCGCCDTYADYLEENGYTVTRIDDRDFDKRSIEVGVPEQGLGCHLAEIEGYYVSGLVPSEILERLVAEKPDITGITLPGMPSNAPGMARVKTGTLKTYAFGEGGIAVYSDE
>NZ_CP049815.1|WP_166195301.1|126237_126723_-|cytochrome-c
MRRAATIGAAIVALSVIGFAVLAQSESEEDLVEGLSFLGEPVAVADISAGQALYAENCASCHGAELEGQPDWRRRLDTGRMPAPPHDETGHTWHHSDRNLFIVTKGGVGAVVPGYESDMPAFEGILTDDEIADVLSYIKSTWPDRQREFQAEVSVNDKGDL
>NZ_CP049815.1|WP_166195298.1|125671_126241_-|DsbE-family-thiol:disulfide-interchange-protein
MSAVEANRRKGRLVTVLPVAIFALIGAGFYWGLFNGNDTLPSPLIGKAVPEFDLPPIEGRTDGLSTADLKGQVSIVNVWASWCVPCRVEMPLLNELAARDEVAIFGINYKDRPEEALGFLTELGDPYTRIGADRNGRVSIDWGVYGLPETFVIDAEGRIAYKHIGPFNRNSLEENILPVVRRLQEGAGS
>NZ_CP049815.1|WP_166195296.1|125150_125675_-|TlpA-family-protein-disulfide-reductase
MKRRELLTGMAAIGVAGPVQARPLMPLHEKPREMLSPPFVDGAGRDLTLADFRGRVILLNIWATWCVPCREEMPTLDALQEKLGGDDFHVLPLSIDRAGMKVVRRFYEEIGIRHLGMYLADSTRAMLAFGVLGLPTTILIDRGGFERGRLVGPAEWDSHEVMAQIQTIINERSE
>NZ_CP049815.1|WP_166195293.1|124874_125147_-|hypothetical-protein
MSETSPCTETPEARPWRPQLGRRSLILASMAIIGAGLYLNWGWVTAIGAAPLILAVAPCAVMCGLGVCMMCKSDSCDKKSAAAEPGLPRD
>NZ_CP049815.1|WP_166195290.1|124557_124839_-|hypothetical-protein
MTLIKKLSMATAVSTVLATGVFAQDNTGSSDQMMDGENGMAGNMMDGDMSGMDGMMPMMKMMQKMGPMMEACTEMMEAMNNSENGVATSTDKG
>NZ_CP049815.1|WP_166195287.1|123749_124505_-|DsbA-family-protein
MTFKTTLHMLAVLLWALISAPATSLAQQSTPLEQVEQEAIKALILQTIRENPEVLVDTLLTFQEEAEAAAQAQQRAAIQRVGELLRTDANTGVMGNPDGDIVLVEFFDYNCPYCRRAAPVLFELIEENPDLRIIMREWPILGPDSKLAARASLAAVKQNKFEAFHEALMAQPRANTVFIRRAAEQAGLDYDQLQVDMAAPEIDAHIETSRNLAGQLGISGTPTFLIGETLVPGLLEKADLQALISEAEDVD
>NZ_CP049815.1|WP_166195284.1|123118_123760_-|SCO-family-protein
MSIEPSETSPKARLLRTILWGTIAVALAGLAIFWALDNYLGNGSKTVRYSGEADIRSEFSLTDHTGQEVTPADYTYRWQLVFFGFTNCPDICPTTLAYMASVVDLLGEDADQVAPIFITVDPERDTVPVMAEYVSVFHPSLIGLTGTEAQVAEATRNFRTWYERTEDDSAPDGYFMAHAGHIYLMQPSGEFEAVYQEGGQPPEALAQEIRKKL
>NZ_CP049815.1|WP_166195281.1|122657_123101_-|copper-chaperone-PCu(A)C
MKITALATVLTLWPFFASADVTISDGWARASILASRPAAAYLTLTSNQSDQLVAITTPIAGNVTIHAVETDNDGISRMVEVDGLDLPSGEPVTLAPGSMHLMLMGLSEKLEEGTDLPLFLTFASGARMEISVPVLGPGAMRPQEQQP
>NZ_CP049815.1|WP_166195310.1|129910_130249_-|hypothetical-protein
MHFVARLIMIAVLAAFAVSSVAHAAGSARMASEMITAGAEMPGADCEACDDSAGPSGIACDFVCNSAAAAALVETSAEFGLHAISSAHGMSIARDFRGLTSPPAKQPPKFLL
>NZ_CP049815.1|WP_166195313.1|130258_130696_-|Cu(I)-responsive-transcriptional-regulator
MNIGNVSEQSGLPAKTIRYYEDIGLVQPSRRENGYRDFAVQDLHKLAFLGRARSLGFSIDECRTLLSLYEDRERSSADVKAIAQSHLARVDQKIEELQALSATLRDLVVRCHGDDRPDCPIMDDLTRSDLRRREIIPLEQPSEHW
>NZ_CP049815.1|WP_166195316.1|130784_133337_-|NAD-dependent-epimerase/dehydratase-family-protein
MTDESKPVVIVTGSSGYLGSAVVRRLHESYRVVGLDRYSPPHPPHQAECVCFDITDQASVDTALDRVRLAYGDSIAACIHLAAYFDLSGEDDPAYDAVTVEGSKRLLKGLQEFKLEQFVFASTMLAHAPTEPGEPIDEDHPFDPKLPYRASKVRTERMLREERGDEKLVLMRPAGIYDDKGQSTFLTHQIVRIHEKRFSGKLYPGDLSRGQAFLHLDDFLDAVESIVDRRAKLPDVFPVLLGESDPIPFGELQRLIGRELHGEDWITWNVPPQLAKLGTWTENKIFGEDAFIRAWMVDISNDHYELDLSAAKKHLDWTPEHSLRDDMPGILQRLKDDPYEWYKANGLNAARVSAAKVENAVAEEAAEETPSEAEASENRREHDDHMRQMHFSMLWVHWLVMALGLWLATAPSVFGTFDQTEFSAAVQRVTEDRGLWAASTRSWLTAWNDVFTGLAIMVFAALSLRHGNGWAQWANAALGVWLLAAPLVFWTPDAAVYANDTLIGALVVALTILIPMMPGMSREGMMDDSDIPPGWTYCPSTYVQRLPIIALGVVGFILSRILSAYQLGHVDSVWEPFFSSPSALNGSEYIITSDVSKAWPIADGGLGAMSYMFEIMMGVMGSRLRWRTMPWMVALFGIVVGPLGVISIYFIIIQPITIGTYCTICLMAALAMLIMIPFSLDEIVAMVQFMVWNTRRGRPFWRAFFRGDALPGGATGGEMSFDARPMQIFRQSARGVTVPWTLGLSAAIGAFLMLSRAIFGNEAAMANSDHLLGALVLTTAVIAWAEVARPLRFLNILFGLWLVIAPWFLGGGTVAGSLVGILAGIALIALSLPRGKRSEEHYGSWDRFIF
>NZ_CP049815.1|WP_166195319.1|133664_135980_+|heavy-metal-translocating-P-type-ATPase
MDTKKAETREVTDPVCGMKVDHATAKHRSTHAGEEFLFCSSRCKDKFDAEPETYLGAGPAPEPMPEGTIFTCPMHPEIEQVGPGDCPICGMALEPKGVPTGDEGPNPELVDFTRRFWIGASLTIPVVLLAMGGYVGMPIRDWTGERLAHWLELILATPVILWAGWPFLVRGWKSFRTLNLNMFSLIAMGVFAAWTFSTFAVIAPGLFPAGFRDDQGNVGIYFEAGAVIVVLVLLGQILELRARERTGSAIRALLDLAAKSARIIRADGSEEEVALEDVQIGDHIRVRPGEKVPVDGEVIDGRSSVDESMLTGEPVPVEKVTGDAVTGATINGTGSMIIEAKRVGEDTMLAQIVEMVAAAQRSRAPIQKLADAVAGYFVPAVIAVAIVSFIAWSIWGPTPALAYGLVSAIAVLIIACPCALGLATPMSIMTATGRGAQAGVLIKNAEALEAFEKVDTLIVDKTGTLTMGKPELAAVLPEDGHDEEDLLRLAASLERGSEHPLAEAIVRGAEARGIDLASAHDFEAVTGMGVKGIVDGKSVALGNARMIGEIGLNAPAATEVANDRRDQGETVMFVIIDGAVAGLVSVADPVKETTPAALKALHELGFRIVMATGDNERTARAVASRLGIDDVRADVLPEDKARIIRELQAEGRKVAMAGDGVNDAPALAQADVGIAMGTGADVAIESAGFTLLKGDLNGLVRARRLSLATMRNIRQNLFFAMIYNTAGVPIAAGILYPFFGLLISPMFAAAAMSLSSVSVIGNALRLRTVRL
>NZ_CP049815.1|WP_166195322.1|136112_136472_-|hypothetical-protein
MASGDRSDFLSTLPGGLIGWGLPIAAMLLAIGVPHPVKTWVWVIALIWMGAACLWNAHRCKRRHCFWTGPFFLVMGLAVLAYGYGFVDLGGQGWKWLGAVIGIGAWAIAAITEREGRYR
>NZ_CP049815.1|WP_166195325.1|136476_137928_-|mercury(II)-reductase
MDQTVKKKDCCSSKEVSGDQYDLIVVGAGSAGFSASITAAEAGKRVALVGHGTIGGTCVNVGCVPSKAMIRAAEAVHGGASAARFPGISPCAHAVDWGGVVKGTADLVEEMRQKKYIDLLPAYENVTYIEEGPARLVEGGVAVGGRVISAPRVLIATGSRPHIPVIDGIEAVEALDSWGLLTLPDRPESILFLGGGYIGCELAQMASRLGVKVTLVTRSRLLPGAEPEVTEALTEALKVEGITVETGLAYVSVAKAAGGVSLTVERGGKTEDLTAERLVVTTGRIANSENLGLEELGIETDARGSVMVGPDMATTRAGVWAAGDVTDRDQFVYMAAYGAKVAINNALGLEQMRYDNAAMPWVVFTDPQVAGVGLSEAEAKTAGYDVKTSVITLDNVPRAAAARDTRGVIKLVADVKTDRLLGGQIAAPEGSETIQTLAMTLKFGMTAGALGETIFPYLTTVEGLKLAAQTFDKDVAKLSCCAG
>NZ_CP049815.1|WP_166195328.1|137987_139337_-|NAD(P)/FAD-dependent-oxidoreductase
MTKTYDLIVIGGGTAGNGVARTAADAGWSVASIDSEPHGGTCALRGCDPKKMLVAVTEGVEWAENMKGKGLEAQPSVNWSDMIAFKRSFTDNMPPRIQGGMEKAGIDVLHGEARFTGSDTIEWNGETLTAKHFHIATGARPMTLNIPGEEHLTTSTEFLELPERPDRIAFVGGGFIAMEFAHIVRRAGFSEVTVLEMADRPLGNFDPDLVEMLVEGTEKLGIDLRTKAKVTKIEKQGDEFTVTVERADATETVTCDLVVHGTGRVPNIDGLNLEAAGVEYTRRGIKVSHAMGTTNPAIFAAGDCADSGLNLTPVSAAEGRIAGKNLLAGEDAKEIKYPPIPSVVFTLPMVATVGLSEAEAKEQGRKFDVHFEKTEGWYSSLRVGAKHTGFKVLVEQGSGQILGAHLIGPGSEEQINLFAMAMGAGQTANQIKAMIFAYPSYASDIGSMV
>NZ_CP049815.1|WP_166195381.1|139350_139752_-|mercury-resistance-system-transport-protein-MerF
MNNKNEPTTLLRRGLIGSVFAAICCFTPFLVLIVAGVGLSAVVGWLDYALFPMLFASLSAVAYALWQQADRQGHSPKALLIGLAVVLSALLFWLEFRFALRISIAAALAVAGYALWLRKSGSSAVSQIKRNWH
>NZ_CP049815.1|WP_166195331.1|139798_140104_-|periplasmic-mercury-ion-binding-protein
MKSLHLALAVVGTLAAFPASAAEQRINIGVGELTCPTCSYTVAAAMRGVPSVEIIDFTEGEEFGTGTYIVAFDDEAADQDMIVEAIRATGYPADIVESGDS
>NZ_CP049815.1|WP_166195384.1|140116_140488_-|mercury-transporter
MDETVAADKKAWATTWLGALGALAMTSCCILPLVLVSFGVTGVFIAQLGVLYQYKWITFALSAAFIGYGFYKAYRPIAAKVCADGTCARPMNRTLMRSILWIATAIVAVAMIFPYLTPYLLSY

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP049815_1	1.1\|128679\|43\|NZ_CP049815\|CRISPRCasFinder	128679-128721	43	NZ_CP049815	Monaibacterium sp. ALG8 plasmid unnamed4, complete sequence	128679-128721	0	1.0
NZ_CP049815_1	1.1\|128679\|43\|NZ_CP049815\|CRISPRCasFinder	128679-128721	43	NZ_CP031599	Roseovarius indicus strain DSM 26383 plasmid pRIdsm_01, complete sequence	428205-428247	1	0.977

1. spacer 1.1|128679|43|NZ_CP049815|CRISPRCasFinder matches to NZ_CP049815 (Monaibacterium sp. ALG8 plasmid unnamed4, complete sequence) position: , mismatch: 0, identity: 1.0

cccatcatgcctccacgcggctccaggcccatctctcgctcca	CRISPR spacer
cccatcatgcctccacgcggctccaggcccatctctcgctcca	Protospacer
*******************************************

2. spacer 1.1|128679|43|NZ_CP049815|CRISPRCasFinder matches to NZ_CP031599 (Roseovarius indicus strain DSM 26383 plasmid pRIdsm_01, complete sequence) position: , mismatch: 1, identity: 0.977

cccatcatgcctccacgcggctccaggcccatctctcgctcca	CRISPR spacer
cccatcatgcctccacgcggctccaggcccatctcccgctcca	Protospacer
***********************************.*******

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP049816_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049816_1

29115-29448

TypeI-E

Consensus_repeat	Method
GGCTCCCCCGCACCCGCGGGGATAGACCC	PILER-CR
GGCTCCCCCGCACCCGCGGGGATAGACCC	CRISPRCasFinder
GGCTCCCCCGCACCCGCGGGGATAGACCC	CRT

5 spacers

cas6e,cas5,cas7,cse2gr11,cas8e,cas3,cas1,cas2

The CRISPR arrays of NZ_CP049816_1

>merge|NZ_CP049816|1|29115-29448|PILER-CR,CRISPRCasFinder,CRT
GGCTCCCCCGCACCCGCGGGGATAGACCCCATTGTCGATGGATTTTGAACACCTCAAGGCAGGCTCCCCCGCACCCGCGGGGATAGACCCTTGCTTAGTGGCCCTAGCGGACAACGAGGGGGGGCTCCCCCGCACCCGCGGGGATAGACCCCTTATCACTTGGGTCCTGTCCGAAGCGCTCATGGCTCCCCCGCACCCGCGGGGATAGACCCGCTATCGTGTGGTTCGTCGTCCTGCCCTCACTGGCTCCCCCGCACCCGCGGGGATAGACCCACATCGGCAAGGCTGGCGCAGAATACACGCTGGGCTCCCCCGCACCCGCGGGGATAGATTC

>NZ_CP049816|1|1|29115-29387|PILER-CR
GGCTCCCCCGCACCCGCGGGGATAGACCC	CATTGTCGATGGATTTTGAACACCTCAAGGCA
GGCTCCCCCGCACCCGCGGGGATAGACCC	TTGCTTAGTGGCCCTAGCGGACAACGAGGGGG
GGCTCCCCCGCACCCGCGGGGATAGACCC	CTTATCACTTGGGTCCTGTCCGAAGCGCTCAT
GGCTCCCCCGCACCCGCGGGGATAGACCC	GCTATCGTGTGGTTCGTCGTCCTGCCCTCACT
GGCTCCCCCGCACCCGCGGGGATAGACCC

>NZ_CP049816|1|1|29115-29448|CRISPRCasFinder
GGCTCCCCCGCACCCGCGGGGATAGACCC	CATTGTCGATGGATTTTGAACACCTCAAGGCA
GGCTCCCCCGCACCCGCGGGGATAGACCC	TTGCTTAGTGGCCCTAGCGGACAACGAGGGGG
GGCTCCCCCGCACCCGCGGGGATAGACCC	CTTATCACTTGGGTCCTGTCCGAAGCGCTCAT
GGCTCCCCCGCACCCGCGGGGATAGACCC	GCTATCGTGTGGTTCGTCGTCCTGCCCTCACT
GGCTCCCCCGCACCCGCGGGGATAGACCC	ACATCGGCAAGGCTGGCGCAGAATACACGCTG
GGCTCCCCCGCACCCGCGGGGATAGATTC

>NZ_CP049816|1|1|29115-29448|CRT
GGCTCCCCCGCACCCGCGGGGATAGACCC	CATTGTCGATGGATTTTGAACACCTCAAGGCA
GGCTCCCCCGCACCCGCGGGGATAGACCC	TTGCTTAGTGGCCCTAGCGGACAACGAGGGGG
GGCTCCCCCGCACCCGCGGGGATAGACCC	CTTATCACTTGGGTCCTGTCCGAAGCGCTCAT
GGCTCCCCCGCACCCGCGGGGATAGACCC	GCTATCGTGTGGTTCGTCGTCCTGCCCTCACT
GGCTCCCCCGCACCCGCGGGGATAGACCC	ACATCGGCAAGGCTGGCGCAGAATACACGCTG
GGCTCCCCCGCACCCGCGGGGATAGATTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049816.1\|WP_166195447.1\|19928_20909_+\|plasmid-partitioning-protein-RepB	unknown	unknown	gnl\|CDD\|274586
NZ_CP049816.1\|WP_166195459.1\|24429_24690_+\|hypothetical-protein	cas8e	cls000028_cas8e_CAS-I-E	unknown
NZ_CP049816.1\|WP_166195398.1\|27579_28272_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|273842
NZ_CP049816.1\|WP_166195468.1\|26455_27583_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP049816.1\|WP_166195476.1\|30507_30801_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|378244
NZ_CP049816.1\|WP_166195450.1\|21089_22169_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|184349
NZ_CP049816.1\|WP_166195473.1\|29627_30506_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|187850
NZ_CP049816.1\|WP_166195465.1\|25901_26459_+\|hypothetical-protein	cse2gr11	mkCas0171_cse2gr11_CAS-I-E	unknown
NZ_CP049816.1\|WP_166195462.1\|24762_25905_+\|hypothetical-protein	cas8e	cls000028_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP049816.1\|WP_166195453.1\|22186_23737_+\|CRISPR-associated-endonuclease-Cas3''	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP049816.1\|WP_166195456.1\|23657_24308_+\|hypothetical-protein	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP049816.1\|WP_166195470.1\|28268_29051_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|215025
NZ_CP049816.1\|WP_166195479.1\|32829_33477_+\|glutathione-S-transferase	unknown	unknown	gnl\|CDD\|223698

Protein	Function_ID	Function_description	E-value
NZ_CP049816.1\|WP_166195468.1\|26455_27583_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	2.96336e-102
NZ_CP049816.1\|WP_166195470.1\|28268_29051_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|215025	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	2.83409e-23
NZ_CP049816.1\|WP_166195462.1\|24762_25905_+\|hypothetical-protein	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	4.27915e-07
NZ_CP049816.1\|WP_166195450.1\|21089_22169_+\|hypothetical-protein	gnl\|CDD\|184349	PRK13824, PRK13824, replication initiation protein RepC; Provisional.	4.71418e-71
NZ_CP049816.1\|WP_166195473.1\|29627_30506_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187850	cd09719, Cas1_I-E, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	4.86778e-90
NZ_CP049816.1\|WP_166195447.1\|19928_20909_+\|plasmid-partitioning-protein-RepB	gnl\|CDD\|274586	TIGR03454, partition_RepB, plasmid partitioning protein RepB. Members of this family are the RepB protein involved in replicon partitioning. RepB is found, in general, as part of a repABC operon in plasmids and small chromosomes, separate from the main chromosome, in various bacteria. This model describes a rather narrow clade of proteins; it should be noted that additional homologs scoring below the trusted cutoff have very similar functions, although they may be named differently. [Mobile and extrachromosomal element functions, Plasmid functions].	7.85207e-107
NZ_CP049816.1\|WP_166195456.1\|23657_24308_+\|hypothetical-protein	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	4.26986e-20
NZ_CP049816.1\|WP_166195398.1\|27579_28272_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|273842	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is part of the ECOLI subtype CRISPR/Cas locus, and now characterized as part of the CASCADE complex of that system. It shares a small N-terminal homology region with members of several other CRISPR/Cas subtypes, and we view the families that share this region as being Cas5.	5.41618e-42
NZ_CP049816.1\|WP_166195476.1\|30507_30801_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|378244	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978). This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799. Cas proteins are found adjacent to a characteristic short, palindromic repeat cluster termed CRISPR, a probable mobile DNA element.	7.29009e-25
NZ_CP049816.1\|WP_166195453.1\|22186_23737_+\|CRISPR-associated-endonuclease-Cas3''	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	2.5876e-45
NZ_CP049816.1\|WP_166195479.1\|32829_33477_+\|glutathione-S-transferase	gnl\|CDD\|223698	COG0625, Gst, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	2.70127e-36

>NZ_CP049816.1|WP_166195470.1|28268_29051_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MSGLHMVHIPLAPHDLARIAGQRGWTRATARDPVGTFDEGVALHHLSVEAFGPGALKPFRLMVAPGGRSAALYGYSHHTADALRGTAHAIAPPEIADLMSPEGLRAKPMPQNWTAGQRVGFDLRVRPVRRLKKAVGGRRPGAEIDVFVHEALSRFDADENGMLTSGRSRAAVYGDWLAERLAGDGIARLEGPAELVSFARERAVRKGRAVEGPAAVLRGTLVIERPAAFADLLHRGIGRHTAYGYGMVLLRAPQEQPIGE
>NZ_CP049816.1|WP_166195398.1|27579_28272_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MTRWLILDLCGPMMAFGGVAVDQVGPVRDFPALSMITGLVANALGLDWRERQAHAQLQSRLVLASVVVEEPERVTDMQNAQLAAADKGWTTRNMPEGRDGGTYGAPHRRARAYLADGRVICVLRLKDMAGPDLDQVKTALQCPARPLFLGRKPCLPSRPVLGGEVAGQTAHEALKAALLAHGITGSLRAQWPMGQGPDDGAQDLADLRNWRTGLHGGRRAVQTGRIGAMA
>NZ_CP049816.1|WP_166195468.1|26455_27583_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTLRFLQIHTLTGYSAALLNRDDNGLAKRLPYGGAIRTRVSSQCLKRHWRMADDVHSLHTIDGAEAARRSREAVTHEIIAPLTVSHGADIAKAIGDAFQLAVYGDKGHSRTSRQILLLGAPELRWLKSEVERLAGEAGGDAKQAAELAKDWHKAFRANAKAMREATALPGGLTGALFGRMVTSDPEANIAAPVHVAHSFTVHPAESELDFYAAVDDLDPEEGAGNLGETELTSGLYYGYVVIDLAGLLSNLGGDGDMAGQVVHNLIHLIAEVTPGAKLGSTAPYGRAGFMMVEAGDRQPRSLAEAFRVPCKPDLGSAVAALTGQLARFDECYATGEERHAMSLANGDLDGMTRGGLADLARFGAGIAGQGGERQA
>NZ_CP049816.1|WP_166195465.1|25901_26459_+|hypothetical-protein
MSDEMDTAGIAREIARRLDRLDPGDAAAARRTSPAQGSPFFWRCHSEFPQIARQPEAWAQIVQILAILTPRGDPLERVTITRDFVPLGRALCDGGNTAWGQDDARAVVSEERLARLLAQQGPLREDALRRVLTGIARRLPPDVAIRAGDVAFAVLAPDRTAHIASEYYKRLDRAERKQTTKEQGV
>NZ_CP049816.1|WP_166195462.1|24762_25905_+|hypothetical-protein
MATPDALDLLITSRNHDLKREIAAEAEAQDWLFALVSLQVSEGYGGRGNHGIARMNGGSSSRAMVARVPMGAGLRIDPSAWFRRDVTALLRARAEGRHRHIGTEGGPALIWTLPWPEGRKLSIGALDPWFVEVCRRVRLYRDAAGAIRAMRATSTAGRIEAKAQKGAVGDPWAPVHKGEGKAFTLSSGDFDYRTIDKLYFGTDWERPLLSTAQPDDADGPVLLLFEALARGNSKTEGFRSRVVVMPRALNGREVDAGVFSKEQIADIAEGAKALNTALALVVAGGADPSKEDRVLVRSSGDRMQARLDAVFFDYLGARLEGAPREAFQAEVRAQARATFEAEWQGYAVDALFRHRAEARARRTLDIMLARLRTEEMEDDA
>NZ_CP049816.1|WP_166195459.1|24429_24690_+|hypothetical-protein
MTLLHDPLISDQAGRLFSLPGLFAALSRGEVSDLPALRPHQRAAWHMTCVQIAALACWQAGQGDLAEDEGGWRDMLLGLTQGEEAP
>NZ_CP049816.1|WP_166195456.1|23657_24308_+|hypothetical-protein
MEAALGKASRAGGLVVCGSQTLEQSLDIDADFLITDLAPVDVLLQRFGRLHRHDRARPEGFEQPRAVIALPENGLASLTKPSFFNGLGRWSEGGIYMDLAGLEATRRLIGAHPVWKIPAMNRMLVERATHPRTLEALTQQMGESWVADRQGLEGLSLAESAAGRRLRLDRAMPFETLEFPDYDEHVATRLGAQGPLLRRGGGRASRIKSPGWRVRC
>NZ_CP049816.1|WP_166195453.1|22186_23737_+|CRISPR-associated-endonuclease-Cas3''
MSASAKPAMAWGKYDRESGASHALVAHCLDVAMVLEAVMGAPRIRRGLQKLTEIPVDDRMLSRLCVLAYLHDVGKLAPGFQLKIAEQAGRGILLRALRMPANPVRDIAVALEDWAGPATEGYIAAMMAHHGQPIQIADAREASVKDSRFDGREDAKAYARIARTTWPEAFAPGGALPAEPAFMAQWAGLLSIADWIGSDADHFPFHEVVTQDYAQLARRQANRAVRMCGMIGAAAPVPDFAALTGFAQPRPLQAKIAEIPSDQQLMILEAETGSGKTEAALWRFVHLLVAGEVSALYFAVPTRAAARQLHRRVDEAVQRFLGIEAVLAVPAQLASGEATGTRLPGWEVRWDDDAPRGARWAAEHATRFLSAQVAVGTVDQVMLAGLQTKHALARGAGLSRALLVVDEVHASDTYGRAVLAPFLRDHMATGGHVLLMSATLGAGAGDPQHGAGGARLSDSARRCAVPVRRRRAHIALRALRGGGSRPAGCRGGGCSGQGQQGRGAGGLRFANSGAKP
>NZ_CP049816.1|WP_166195450.1|21089_22169_+|hypothetical-protein
MKHITATPFGRRAIDLARIRRESEQRAVIHIPRDKWDLLNAFEIAAPEFGLSHRQMNVLRALLSLHGPRVLDSSGSLIVFASNRKIAERAQNMPESTMRRHVACLIDSGFLARHDSANGKRFRTRRDGEAVAFGLDLTPLLARAEEIIAMAAKVTEAEEQRRDLRARLSAMLRDIMTLNPDQDLIEVRRSLRRKSPLDVLQSLFKRLSALHNALLDRLEPSEKTCVSSSNDARNEQHIQSQHTEEITLHTVLDHCPALLDHLDDTRVDWRNVTDAALRIAPMMGVSREVVTRLTPRVGLQRMAVSICLLLQRFDEVKSPTAYLTWLCEHGRLGKELRKLTAVNSNMEHRLRPSDAIGGW
>NZ_CP049816.1|WP_166195447.1|19928_20909_+|plasmid-partitioning-protein-RepB
MARKDLLKGLMDDSAKPPARPDDTSGDHARVDAVRPRYQKGAIGAVSQSIAELKSRSLTDIDPHMIEAGGIEDRLEYDEGEHAALMESMRNYGQQVPILVRPSPQDSTRYQIVYGRRRVLAARDLGIPIRAMIRDLDDQDLILAQGQENTARRDLSFIEKVNFASQMRDAGYARNLICDALHVDKTTLSRMIQVADAVPSQVIVAIGSAHGVGRPRWLKLGELLRASDMETEGAVAIAQLPTHGPTSQDRFEGLMNALLDATRSPKRPAPAPTRLTGADDTPLATVRHKGKKIAFDFDTAEGARFAEWLTEHLPEIHQTWKTRDDE
>NZ_CP049816.1|WP_166195473.1|29627_30506_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MLKGRLGLDSAKVPHADREGLLYLARGALSARSGTLAFLRGEASGADALDTGDYAIPLQGVSMILLGPGSTVSHDALRLLAHARTALAAVGEDGVRLYTAPPLIPDRSGLARVQARLWADDAMRIDIARRMYAWRLGEVLAHRDMDGLRGIEGARMKQSYRLIADQVGVRWEGRRYERGNPGSADLPNQALNHASSAVEAAAAIAVAATATIPQLGFIHEDPGQSFVLDIADLWRVEVTIPTAFRAAKQAAERPSENIERLARRMTGDVLARRKVIPEMIGQIKTLIAGEGA
>NZ_CP049816.1|WP_166195476.1|30507_30801_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MPLAMIVTSNVQDRYRGFLTSVMLEIAPGTYVSPRMSAGVRTRVWSVMESWWEVLQTGSLVLVWADRQAPGGLRIETLGLPKKTIVDADGVLLVKRE
>NZ_CP049816.1|WP_166195479.1|32829_33477_+|glutathione-S-transferase
MLEIWGRRSSSNVQALMWCVGELALPHVRHDAGGRYGVTETDAFAALNPNRTVPVLQDADGPAIWETGAILRYLANRYGSTSFWPDDPVERAEVDKWAEWAKINVAMGFTVPVFWRVVRTPETERDPAAIAAALRALHDILAIAETRIEKTGWLAGSSFTLADIQFGHILFRYFDIDIERPNWSSLKGYFDRLMLRPAFREHVAISYDELRAHPR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP049816_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049816_2

30864-31195

TypeI-E

Consensus_repeat	Method
GGCTCCCCCGCACACGCGGGGATAGACC	CRISPRCasFinder
GGCTCCCCCGCACACGCGGGGATAGACC	CRT
CCCCCGCACACGCGGGGATAGACC	PILER-CR

5 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP049816_2

>merge|NZ_CP049816|2|30864-31195|CRISPRCasFinder,CRT,PILER-CR
GGCTCCCCCGCACACGCGGGGATAGACCCGCTCGAAGAAGTCGTGCAGGTAAGCGGCGGGGGGCTCCCCCGCACACGCGGGGATAGACCCCCCAAGCATTTGAGCCTGCTGGACCTCTTCCCGGCTCCCCCGCACACGCGGGGATAGACCGCATGACGGGGGTGCTGGCGACTTTGGAATATTGGCTCCCCGCACACGCGGGGATAGACCTTATATTGACGGCACCTATTGGTTTCGGTTCAAGGCTCCCCCGCACACGCGGGGATAGACCCGCGATCCTATCTGCGGAGCGGGCAGCGGTGGAGGCTCCCCCGCACACGCGGGGCCAGTGG

>NZ_CP049816|2|2|30864-31195|CRISPRCasFinder
GGCTCCCCCGCACACGCGGGGATAGACC	CGCTCGAAGAAGTCGTGCAGGTAAGCGGCGGGG
GGCTCCCCCGCACACGCGGGGATAGACC	CCCCAAGCATTTGAGCCTGCTGGACCTCTTCCC
GGCTCCCCCGCACACGCGGGGATAGACC	GCATGACGGGGGTGCTGGCGACTTTGGAATAT
TGGCTCCCCGCACACGCGGGGATAGACC	TTATATTGACGGCACCTATTGGTTTCGGTTCAA
GGCTCCCCCGCACACGCGGGGATAGACC	CGCGATCCTATCTGCGGAGCGGGCAGCGGTGGA
GGCTCCCCCGCACACGCGGGGCCAGTGG

>NZ_CP049816|2|2|30864-31195|CRT
GGCTCCCCCGCACACGCGGGGATAGACC	CGCTCGAAGAAGTCGTGCAGGTAAGCGGCGGGG
GGCTCCCCCGCACACGCGGGGATAGACC	CCCCAAGCATTTGAGCCTGCTGGACCTCTTCCC
GGCTCCCCCGCACACGCGGGGATAGACC	GCATGACGGGGGTGCTGGCGACTTTGGAATAT
TGGCTCCCCGCACACGCGGGGATAGACC	TTATATTGACGGCACCTATTGGTTTCGGTTCAA
GGCTCCCCCGCACACGCGGGGATAGACC	CGCGATCCTATCTGCGGAGCGGGCAGCGGTGGA
GGCTCCCCCGCACACGCGGGGCCAGTGG

>NZ_CP049816|2|2|30868-31134|PILER-CR
CCCCCGCACACGCGGGGATAGACC	CGCTCGAAGAAGTCGTGCAGGTAAGCGGCGGGGGGCT
CCCCCGCACACGCGGGGATAGACC	CCCCAAGCATTTGAGCCTGCTGGACCTCTTCCCGGCT
CCCCCGCACACGCGGGGATAGACC	GCATGACGGGGGTGCTGGCGACTTTGGAATATTGGC
TCCCCGCACACGCGGGGATAGACC	TTATATTGACGGCACCTATTGGTTTCGGTTCAAGGCT
CCCCCGCACACGCGGGGATAGACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049816.1\|WP_166195473.1\|29627_30506_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|187850
NZ_CP049816.1\|WP_166195465.1\|25901_26459_+\|hypothetical-protein	cse2gr11	mkCas0171_cse2gr11_CAS-I-E	unknown
NZ_CP049816.1\|WP_166195462.1\|24762_25905_+\|hypothetical-protein	cas8e	cls000028_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP049816.1\|WP_166195459.1\|24429_24690_+\|hypothetical-protein	cas8e	cls000028_cas8e_CAS-I-E	unknown
NZ_CP049816.1\|WP_166195398.1\|27579_28272_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|273842
NZ_CP049816.1\|WP_166195470.1\|28268_29051_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|215025
NZ_CP049816.1\|WP_166195456.1\|23657_24308_+\|hypothetical-protein	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP049816.1\|WP_166195468.1\|26455_27583_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP049816.1\|WP_166195476.1\|30507_30801_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|378244
NZ_CP049816.1\|WP_166195453.1\|22186_23737_+\|CRISPR-associated-endonuclease-Cas3''	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP049816.1\|WP_166195479.1\|32829_33477_+\|glutathione-S-transferase	unknown	unknown	gnl\|CDD\|223698

Protein	Function_ID	Function_description	E-value
NZ_CP049816.1\|WP_166195473.1\|29627_30506_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187850	cd09719, Cas1_I-E, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	4.86778e-90
NZ_CP049816.1\|WP_166195462.1\|24762_25905_+\|hypothetical-protein	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	4.27915e-07
NZ_CP049816.1\|WP_166195479.1\|32829_33477_+\|glutathione-S-transferase	gnl\|CDD\|223698	COG0625, Gst, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	2.70127e-36
NZ_CP049816.1\|WP_166195398.1\|27579_28272_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|273842	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is part of the ECOLI subtype CRISPR/Cas locus, and now characterized as part of the CASCADE complex of that system. It shares a small N-terminal homology region with members of several other CRISPR/Cas subtypes, and we view the families that share this region as being Cas5.	5.41618e-42
NZ_CP049816.1\|WP_166195470.1\|28268_29051_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|215025	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	2.83409e-23
NZ_CP049816.1\|WP_166195456.1\|23657_24308_+\|hypothetical-protein	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	4.26986e-20
NZ_CP049816.1\|WP_166195468.1\|26455_27583_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	2.96336e-102
NZ_CP049816.1\|WP_166195476.1\|30507_30801_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|378244	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978). This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799. Cas proteins are found adjacent to a characteristic short, palindromic repeat cluster termed CRISPR, a probable mobile DNA element.	7.29009e-25
NZ_CP049816.1\|WP_166195453.1\|22186_23737_+\|CRISPR-associated-endonuclease-Cas3''	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	2.5876e-45

>NZ_CP049816.1|WP_166195476.1|30507_30801_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MPLAMIVTSNVQDRYRGFLTSVMLEIAPGTYVSPRMSAGVRTRVWSVMESWWEVLQTGSLVLVWADRQAPGGLRIETLGLPKKTIVDADGVLLVKRE
>NZ_CP049816.1|WP_166195473.1|29627_30506_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MLKGRLGLDSAKVPHADREGLLYLARGALSARSGTLAFLRGEASGADALDTGDYAIPLQGVSMILLGPGSTVSHDALRLLAHARTALAAVGEDGVRLYTAPPLIPDRSGLARVQARLWADDAMRIDIARRMYAWRLGEVLAHRDMDGLRGIEGARMKQSYRLIADQVGVRWEGRRYERGNPGSADLPNQALNHASSAVEAAAAIAVAATATIPQLGFIHEDPGQSFVLDIADLWRVEVTIPTAFRAAKQAAERPSENIERLARRMTGDVLARRKVIPEMIGQIKTLIAGEGA
>NZ_CP049816.1|WP_166195470.1|28268_29051_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MSGLHMVHIPLAPHDLARIAGQRGWTRATARDPVGTFDEGVALHHLSVEAFGPGALKPFRLMVAPGGRSAALYGYSHHTADALRGTAHAIAPPEIADLMSPEGLRAKPMPQNWTAGQRVGFDLRVRPVRRLKKAVGGRRPGAEIDVFVHEALSRFDADENGMLTSGRSRAAVYGDWLAERLAGDGIARLEGPAELVSFARERAVRKGRAVEGPAAVLRGTLVIERPAAFADLLHRGIGRHTAYGYGMVLLRAPQEQPIGE
>NZ_CP049816.1|WP_166195398.1|27579_28272_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MTRWLILDLCGPMMAFGGVAVDQVGPVRDFPALSMITGLVANALGLDWRERQAHAQLQSRLVLASVVVEEPERVTDMQNAQLAAADKGWTTRNMPEGRDGGTYGAPHRRARAYLADGRVICVLRLKDMAGPDLDQVKTALQCPARPLFLGRKPCLPSRPVLGGEVAGQTAHEALKAALLAHGITGSLRAQWPMGQGPDDGAQDLADLRNWRTGLHGGRRAVQTGRIGAMA
>NZ_CP049816.1|WP_166195468.1|26455_27583_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTLRFLQIHTLTGYSAALLNRDDNGLAKRLPYGGAIRTRVSSQCLKRHWRMADDVHSLHTIDGAEAARRSREAVTHEIIAPLTVSHGADIAKAIGDAFQLAVYGDKGHSRTSRQILLLGAPELRWLKSEVERLAGEAGGDAKQAAELAKDWHKAFRANAKAMREATALPGGLTGALFGRMVTSDPEANIAAPVHVAHSFTVHPAESELDFYAAVDDLDPEEGAGNLGETELTSGLYYGYVVIDLAGLLSNLGGDGDMAGQVVHNLIHLIAEVTPGAKLGSTAPYGRAGFMMVEAGDRQPRSLAEAFRVPCKPDLGSAVAALTGQLARFDECYATGEERHAMSLANGDLDGMTRGGLADLARFGAGIAGQGGERQA
>NZ_CP049816.1|WP_166195465.1|25901_26459_+|hypothetical-protein
MSDEMDTAGIAREIARRLDRLDPGDAAAARRTSPAQGSPFFWRCHSEFPQIARQPEAWAQIVQILAILTPRGDPLERVTITRDFVPLGRALCDGGNTAWGQDDARAVVSEERLARLLAQQGPLREDALRRVLTGIARRLPPDVAIRAGDVAFAVLAPDRTAHIASEYYKRLDRAERKQTTKEQGV
>NZ_CP049816.1|WP_166195462.1|24762_25905_+|hypothetical-protein
MATPDALDLLITSRNHDLKREIAAEAEAQDWLFALVSLQVSEGYGGRGNHGIARMNGGSSSRAMVARVPMGAGLRIDPSAWFRRDVTALLRARAEGRHRHIGTEGGPALIWTLPWPEGRKLSIGALDPWFVEVCRRVRLYRDAAGAIRAMRATSTAGRIEAKAQKGAVGDPWAPVHKGEGKAFTLSSGDFDYRTIDKLYFGTDWERPLLSTAQPDDADGPVLLLFEALARGNSKTEGFRSRVVVMPRALNGREVDAGVFSKEQIADIAEGAKALNTALALVVAGGADPSKEDRVLVRSSGDRMQARLDAVFFDYLGARLEGAPREAFQAEVRAQARATFEAEWQGYAVDALFRHRAEARARRTLDIMLARLRTEEMEDDA
>NZ_CP049816.1|WP_166195459.1|24429_24690_+|hypothetical-protein
MTLLHDPLISDQAGRLFSLPGLFAALSRGEVSDLPALRPHQRAAWHMTCVQIAALACWQAGQGDLAEDEGGWRDMLLGLTQGEEAP
>NZ_CP049816.1|WP_166195456.1|23657_24308_+|hypothetical-protein
MEAALGKASRAGGLVVCGSQTLEQSLDIDADFLITDLAPVDVLLQRFGRLHRHDRARPEGFEQPRAVIALPENGLASLTKPSFFNGLGRWSEGGIYMDLAGLEATRRLIGAHPVWKIPAMNRMLVERATHPRTLEALTQQMGESWVADRQGLEGLSLAESAAGRRLRLDRAMPFETLEFPDYDEHVATRLGAQGPLLRRGGGRASRIKSPGWRVRC
>NZ_CP049816.1|WP_166195453.1|22186_23737_+|CRISPR-associated-endonuclease-Cas3''
MSASAKPAMAWGKYDRESGASHALVAHCLDVAMVLEAVMGAPRIRRGLQKLTEIPVDDRMLSRLCVLAYLHDVGKLAPGFQLKIAEQAGRGILLRALRMPANPVRDIAVALEDWAGPATEGYIAAMMAHHGQPIQIADAREASVKDSRFDGREDAKAYARIARTTWPEAFAPGGALPAEPAFMAQWAGLLSIADWIGSDADHFPFHEVVTQDYAQLARRQANRAVRMCGMIGAAAPVPDFAALTGFAQPRPLQAKIAEIPSDQQLMILEAETGSGKTEAALWRFVHLLVAGEVSALYFAVPTRAAARQLHRRVDEAVQRFLGIEAVLAVPAQLASGEATGTRLPGWEVRWDDDAPRGARWAAEHATRFLSAQVAVGTVDQVMLAGLQTKHALARGAGLSRALLVVDEVHASDTYGRAVLAPFLRDHMATGGHVLLMSATLGAGAGDPQHGAGGARLSDSARRCAVPVRRRRAHIALRALRGGGSRPAGCRGGGCSGQGQQGRGAGGLRFANSGAKP
>NZ_CP049816.1|WP_166195479.1|32829_33477_+|glutathione-S-transferase
MLEIWGRRSSSNVQALMWCVGELALPHVRHDAGGRYGVTETDAFAALNPNRTVPVLQDADGPAIWETGAILRYLANRYGSTSFWPDDPVERAEVDKWAEWAKINVAMGFTVPVFWRVVRTPETERDPAAIAAALRALHDILAIAETRIEKTGWLAGSSFTLADIQFGHILFRYFDIDIERPNWSSLKGYFDRLMLRPAFREHVAISYDELRAHPR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP049816_1	1.1\|29144\|32\|NZ_CP049816\|PILER-CR,CRISPRCasFinder,CRT	29144-29175	32	NZ_CP049816	Monaibacterium sp. ALG8 plasmid unnamed5, complete sequence	29144-29175	0	1.0
NZ_CP049816_1	1.2\|29205\|32\|NZ_CP049816\|PILER-CR,CRISPRCasFinder,CRT	29205-29236	32	NZ_CP049816	Monaibacterium sp. ALG8 plasmid unnamed5, complete sequence	29205-29236	0	1.0
NZ_CP049816_1	1.3\|29266\|32\|NZ_CP049816\|PILER-CR,CRISPRCasFinder,CRT	29266-29297	32	NZ_CP049816	Monaibacterium sp. ALG8 plasmid unnamed5, complete sequence	29266-29297	0	1.0
NZ_CP049816_1	1.4\|29327\|32\|NZ_CP049816\|PILER-CR,CRISPRCasFinder,CRT	29327-29358	32	NZ_CP049816	Monaibacterium sp. ALG8 plasmid unnamed5, complete sequence	29327-29358	0	1.0
NZ_CP049816_1	1.5\|29388\|32\|NZ_CP049816\|CRISPRCasFinder,CRT	29388-29419	32	NZ_CP049816	Monaibacterium sp. ALG8 plasmid unnamed5, complete sequence	29388-29419	0	1.0
NZ_CP049816_2	2.1\|30892\|33\|NZ_CP049816\|CRISPRCasFinder,CRT	30892-30924	33	NZ_CP049816	Monaibacterium sp. ALG8 plasmid unnamed5, complete sequence	30892-30924	0	1.0
NZ_CP049816_2	2.2\|30953\|33\|NZ_CP049816\|CRISPRCasFinder,CRT	30953-30985	33	NZ_CP049816	Monaibacterium sp. ALG8 plasmid unnamed5, complete sequence	30953-30985	0	1.0
NZ_CP049816_2	2.3\|31014\|32\|NZ_CP049816\|CRISPRCasFinder,CRT	31014-31045	32	NZ_CP049816	Monaibacterium sp. ALG8 plasmid unnamed5, complete sequence	31014-31045	0	1.0
NZ_CP049816_2	2.4\|31074\|33\|NZ_CP049816\|CRISPRCasFinder,CRT	31074-31106	33	NZ_CP049816	Monaibacterium sp. ALG8 plasmid unnamed5, complete sequence	31074-31106	0	1.0
NZ_CP049816_2	2.5\|31135\|33\|NZ_CP049816\|CRISPRCasFinder,CRT	31135-31167	33	NZ_CP049816	Monaibacterium sp. ALG8 plasmid unnamed5, complete sequence	31135-31167	0	1.0
NZ_CP049816_2	2.6\|30892\|37\|NZ_CP049816\|PILER-CR	30892-30928	37	NZ_CP049816	Monaibacterium sp. ALG8 plasmid unnamed5, complete sequence	30892-30928	0	1.0
NZ_CP049816_2	2.7\|30953\|37\|NZ_CP049816\|PILER-CR	30953-30989	37	NZ_CP049816	Monaibacterium sp. ALG8 plasmid unnamed5, complete sequence	30953-30989	0	1.0
NZ_CP049816_2	2.8\|31014\|36\|NZ_CP049816\|PILER-CR	31014-31049	36	NZ_CP049816	Monaibacterium sp. ALG8 plasmid unnamed5, complete sequence	31014-31049	0	1.0
NZ_CP049816_2	2.9\|31074\|37\|NZ_CP049816\|PILER-CR	31074-31110	37	NZ_CP049816	Monaibacterium sp. ALG8 plasmid unnamed5, complete sequence	31074-31110	0	1.0
NZ_CP049816_1	1.5\|29388\|32\|NZ_CP049816\|CRISPRCasFinder,CRT	29388-29419	32	KY006853	Erythrobacter phage vB_EliS_R6L, complete genome	25441-25472	6	0.812
NZ_CP049816_1	1.1\|29144\|32\|NZ_CP049816\|PILER-CR,CRISPRCasFinder,CRT	29144-29175	32	KX455876	Aeromonas phage Ahp2, complete genome	6930-6961	7	0.781
NZ_CP049816_1	1.1\|29144\|32\|NZ_CP049816\|PILER-CR,CRISPRCasFinder,CRT	29144-29175	32	MT074137	Bacteroides phage DAC16, complete genome	85538-85569	8	0.75
NZ_CP049816_1	1.1\|29144\|32\|NZ_CP049816\|PILER-CR,CRISPRCasFinder,CRT	29144-29175	32	MT074142	Bacteroides phage DAC23, complete genome	89387-89418	8	0.75
NZ_CP049816_1	1.1\|29144\|32\|NZ_CP049816\|PILER-CR,CRISPRCasFinder,CRT	29144-29175	32	MT074141	Bacteroides phage DAC22, complete genome	90626-90657	8	0.75
NZ_CP049816_1	1.1\|29144\|32\|NZ_CP049816\|PILER-CR,CRISPRCasFinder,CRT	29144-29175	32	MT074139	Bacteroides phage DAC19, complete genome	90398-90429	8	0.75
NZ_CP049816_1	1.1\|29144\|32\|NZ_CP049816\|PILER-CR,CRISPRCasFinder,CRT	29144-29175	32	MT074140	Bacteroides phage DAC20, complete genome	90397-90428	8	0.75
NZ_CP049816_1	1.4\|29327\|32\|NZ_CP049816\|PILER-CR,CRISPRCasFinder,CRT	29327-29358	32	NZ_CP016082	Streptomyces sp. SAT1 plasmid unnamed2, complete sequence	27017-27048	8	0.75
NZ_CP049816_2	2.2\|30953\|33\|NZ_CP049816\|CRISPRCasFinder,CRT	30953-30985	33	NZ_CP039340	Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence	1243101-1243133	9	0.727
NZ_CP049816_2	2.3\|31014\|32\|NZ_CP049816\|CRISPRCasFinder,CRT	31014-31045	32	NC_020548	Azoarcus sp. KH32C plasmid pAZKH, complete sequence	730492-730523	9	0.719
NZ_CP049816_1	1.2\|29205\|32\|NZ_CP049816\|PILER-CR,CRISPRCasFinder,CRT	29205-29236	32	NZ_CP010421	Azotobacter chroococcum NCIMB 8003 plasmid pAcX50f, complete sequence	107239-107270	10	0.688

1. spacer 1.1|29144|32|NZ_CP049816|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049816 (Monaibacterium sp. ALG8 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

cattgtcgatggattttgaacacctcaaggca	CRISPR spacer
cattgtcgatggattttgaacacctcaaggca	Protospacer
********************************

2. spacer 1.2|29205|32|NZ_CP049816|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049816 (Monaibacterium sp. ALG8 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

ttgcttagtggccctagcggacaacgaggggg	CRISPR spacer
ttgcttagtggccctagcggacaacgaggggg	Protospacer
********************************

3. spacer 1.3|29266|32|NZ_CP049816|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049816 (Monaibacterium sp. ALG8 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

cttatcacttgggtcctgtccgaagcgctcat	CRISPR spacer
cttatcacttgggtcctgtccgaagcgctcat	Protospacer
********************************

4. spacer 1.4|29327|32|NZ_CP049816|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049816 (Monaibacterium sp. ALG8 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

gctatcgtgtggttcgtcgtcctgccctcact	CRISPR spacer
gctatcgtgtggttcgtcgtcctgccctcact	Protospacer
********************************

5. spacer 1.5|29388|32|NZ_CP049816|CRISPRCasFinder,CRT matches to NZ_CP049816 (Monaibacterium sp. ALG8 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

acatcggcaaggctggcgcagaatacacgctg	CRISPR spacer
acatcggcaaggctggcgcagaatacacgctg	Protospacer
********************************

6. spacer 2.1|30892|33|NZ_CP049816|CRISPRCasFinder,CRT matches to NZ_CP049816 (Monaibacterium sp. ALG8 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

cgctcgaagaagtcgtgcaggtaagcggcgggg	CRISPR spacer
cgctcgaagaagtcgtgcaggtaagcggcgggg	Protospacer
*********************************

7. spacer 2.2|30953|33|NZ_CP049816|CRISPRCasFinder,CRT matches to NZ_CP049816 (Monaibacterium sp. ALG8 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

ccccaagcatttgagcctgctggacctcttccc	CRISPR spacer
ccccaagcatttgagcctgctggacctcttccc	Protospacer
*********************************

8. spacer 2.3|31014|32|NZ_CP049816|CRISPRCasFinder,CRT matches to NZ_CP049816 (Monaibacterium sp. ALG8 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

gcatgacgggggtgctggcgactttggaatat	CRISPR spacer
gcatgacgggggtgctggcgactttggaatat	Protospacer
********************************

9. spacer 2.4|31074|33|NZ_CP049816|CRISPRCasFinder,CRT matches to NZ_CP049816 (Monaibacterium sp. ALG8 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

ttatattgacggcacctattggtttcggttcaa	CRISPR spacer
ttatattgacggcacctattggtttcggttcaa	Protospacer
*********************************

10. spacer 2.5|31135|33|NZ_CP049816|CRISPRCasFinder,CRT matches to NZ_CP049816 (Monaibacterium sp. ALG8 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

cgcgatcctatctgcggagcgggcagcggtgga	CRISPR spacer
cgcgatcctatctgcggagcgggcagcggtgga	Protospacer
*********************************

11. spacer 2.6|30892|37|NZ_CP049816|PILER-CR matches to NZ_CP049816 (Monaibacterium sp. ALG8 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

cgctcgaagaagtcgtgcaggtaagcggcggggggct	CRISPR spacer
cgctcgaagaagtcgtgcaggtaagcggcggggggct	Protospacer
*************************************

12. spacer 2.7|30953|37|NZ_CP049816|PILER-CR matches to NZ_CP049816 (Monaibacterium sp. ALG8 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

ccccaagcatttgagcctgctggacctcttcccggct	CRISPR spacer
ccccaagcatttgagcctgctggacctcttcccggct	Protospacer
*************************************

13. spacer 2.8|31014|36|NZ_CP049816|PILER-CR matches to NZ_CP049816 (Monaibacterium sp. ALG8 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

gcatgacgggggtgctggcgactttggaatattggc	CRISPR spacer
gcatgacgggggtgctggcgactttggaatattggc	Protospacer
************************************

14. spacer 2.9|31074|37|NZ_CP049816|PILER-CR matches to NZ_CP049816 (Monaibacterium sp. ALG8 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

ttatattgacggcacctattggtttcggttcaaggct	CRISPR spacer
ttatattgacggcacctattggtttcggttcaaggct	Protospacer
*************************************

15. spacer 1.5|29388|32|NZ_CP049816|CRISPRCasFinder,CRT matches to KY006853 (Erythrobacter phage vB_EliS_R6L, complete genome) position: , mismatch: 6, identity: 0.812

acatcggcaaggctggcgcagaatacacgctg	CRISPR spacer
acatcggccaggctggcgcagaacacggtcag	Protospacer
******** **************.**.  * *

16. spacer 1.1|29144|32|NZ_CP049816|PILER-CR,CRISPRCasFinder,CRT matches to KX455876 (Aeromonas phage Ahp2, complete genome) position: , mismatch: 7, identity: 0.781

----cattgtcgatggattttgaacacctcaaggca	CRISPR spacer
acgaca----cgatggattttgaagacctcaagacc	Protospacer
    **    ************** ********.*

17. spacer 1.1|29144|32|NZ_CP049816|PILER-CR,CRISPRCasFinder,CRT matches to MT074137 (Bacteroides phage DAC16, complete genome) position: , mismatch: 8, identity: 0.75

cattgtcgatggattttgaacacctcaaggca	CRISPR spacer
ttctggagatggatttttaatacctcaaggaa	Protospacer
. .**  ********** **.********* *

18. spacer 1.1|29144|32|NZ_CP049816|PILER-CR,CRISPRCasFinder,CRT matches to MT074142 (Bacteroides phage DAC23, complete genome) position: , mismatch: 8, identity: 0.75

cattgtcgatggattttgaacacctcaaggca	CRISPR spacer
ttctggagatggatttttaatacctcaaggaa	Protospacer
. .**  ********** **.********* *

19. spacer 1.1|29144|32|NZ_CP049816|PILER-CR,CRISPRCasFinder,CRT matches to MT074141 (Bacteroides phage DAC22, complete genome) position: , mismatch: 8, identity: 0.75

cattgtcgatggattttgaacacctcaaggca	CRISPR spacer
ttctggagatggatttttaatacctcaaggaa	Protospacer
. .**  ********** **.********* *

20. spacer 1.1|29144|32|NZ_CP049816|PILER-CR,CRISPRCasFinder,CRT matches to MT074139 (Bacteroides phage DAC19, complete genome) position: , mismatch: 8, identity: 0.75

cattgtcgatggattttgaacacctcaaggca	CRISPR spacer
ttctggagatggatttttaatacctcaaggaa	Protospacer
. .**  ********** **.********* *

21. spacer 1.1|29144|32|NZ_CP049816|PILER-CR,CRISPRCasFinder,CRT matches to MT074140 (Bacteroides phage DAC20, complete genome) position: , mismatch: 8, identity: 0.75

cattgtcgatggattttgaacacctcaaggca	CRISPR spacer
ttctggagatggatttttaatacctcaaggaa	Protospacer
. .**  ********** **.********* *

22. spacer 1.4|29327|32|NZ_CP049816|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016082 (Streptomyces sp. SAT1 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

gctatcgtgtggttcgtcgtcctgccctcact	CRISPR spacer
ttcgccgtgtggttcgtcgtactgccctggct	Protospacer
 ....*************** ******* .**

23. spacer 2.2|30953|33|NZ_CP049816|CRISPRCasFinder,CRT matches to NZ_CP039340 (Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence) position: , mismatch: 9, identity: 0.727

ccccaagcatttgagcctgctggacctcttccc	CRISPR spacer
ccccatgcatttgagcctcctggaacgccctgg	Protospacer
***** ************ ***** * *...

24. spacer 2.3|31014|32|NZ_CP049816|CRISPRCasFinder,CRT matches to NC_020548 (Azoarcus sp. KH32C plasmid pAZKH, complete sequence) position: , mismatch: 9, identity: 0.719

gcatgacgggggtgctggcgactttggaatat	CRISPR spacer
gcacgaagggggtgctggcgacttcgatcgga	Protospacer
***.** *****************.*.   .

25. spacer 1.2|29205|32|NZ_CP049816|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010421 (Azotobacter chroococcum NCIMB 8003 plasmid pAcX50f, complete sequence) position: , mismatch: 10, identity: 0.688

ttgcttagtggccctagcggacaacgaggggg	CRISPR spacer
gaaaattctggccctcacggacaacgaggggc	Protospacer
  .  *  ******* .**************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP049814

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

103248 : 111410

Escherichia_phage(42.86%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_166194904.1\|103248_104160_+	hypothetical protein	D6PH70	uncultured_phage	1.3e-07	29.8
WP_166195002.1\|104508_105387_+	sel1 repeat family protein	NA	NA	NA	NA
WP_166194907.1\|105406_106309_-	glucose-1-phosphate thymidylyltransferase RfbA	A0A291LA53	Escherichia_phage	4.4e-90	57.5
WP_166194910.1\|106305_107157_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	5.8e-31	36.4
WP_166194913.1\|107153_108191_-	dTDP-glucose 4,6-dehydratase	K7QJG5	Escherichia_phage	1.9e-89	49.8
WP_166194916.1\|108187_108772_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.3e-37	46.4
WP_166194919.1\|109065_110391_+	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	2.3e-74	38.2
WP_166194922.1\|110387_111410_+	NAD-dependent epimerase/dehydratase family protein	A0A1V0SAI6	Catovirus	1.0e-18	26.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP049811

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP049811_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049811_1

2548610-2552136

TypeI

I-C

Consensus_repeat	Method
NNNNGTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	CRT
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	PILER-CR
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	CRISPRCasFinder

53 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NZ_CP049811_1

>merge|NZ_CP049811|1|2548610-2552136|CRT,PILER-CR,CRISPRCasFinder
CCCATTTTATATGACGACGGACAGGGAGCGACGATCGCGCCCTTTCATCGGTCGATACCTACATAGTTTCGATCCACGCTCCCGCGAGGGGAGCGACGAGCGGGTGCATTCGCCCTAGCCGCGTTCATGTCGTTTCGATCCACGCTCCCGCCAGGGGAGCGACCATCCGCACCCGGCTGCAATACTCCAAACCGCTGGTTTCGATCCACGCTCCCGCGAGGGGAGCGACTCCAGCATCCCGTTAATCTCGGTCTGCAGTTCCTGTTTCGATCCACGCTCCCGCGAGGGGAGCGACACGAGCAGATGTTTGATGAGGGATGGTGTATCTCGTTTCGATCCACGCTCCCGCGAGGGGAGCGACGTGGGCGATAGCGTGGCGCAGGCGATGCTTGTCAGTTTCGATCCACGCTCCCGCGAGGGGAGCGACGCGACCGAACCATCCGTCTCTCCAATATGGCTCCGTTTCGATCCACGCTCCCGCGAGGGGAGCGACGGCTGTCCCTGATCACGGTCGGCGCCGTGCTGATGTTTCGATCCACGCTCCCGCGAGGGGAGCGACGCAAGCGCATCGGGCGCAGGGTCAAGCGTGGCGTTGTTTCGATCCACGCTCCCGCGAGGGGAGCGACAGAAGCGTGGACTGAAGGCCAGCGCCGGCCAGGGGTTTCGATCCACGCTCCCGCGAGGGGAGCGACCGGGGGGGTGGGTCACACAGTGCCCCCTAACCTAGTTTCGATCCACGCTCCCGCGAGGGGAGCGACGCTCACACGAGTACGCCGCAACACGTGCAGGAATGTTTCGATCCACGCTCCCGCGAGGGGAGCGACCCGTGGCAGTGACCGGCAATCCGATTCAATCGTGCTGTTTCGATCCACGCTCCCGCGAGGGGAGCGACCGGTGCGCCCAGTCACTGGCGGGCTTTTTATTCGTTTCGATCCACGCTCCCGCGAGGGGAGCGACGCGGAGGGTGCCGAGTGATGCCTTTCCACGCTCAGTTTCGATCCACGCTCCCGCGAGGGGAGCGACATCCGGGGGGGAATTCAGGCCTCGGGCGTGCCCATGTTTCGATCCACGCTCCCGCGAGGGGAGCGACGGCAGGCGCGCGCAGGATCGGGCGCTGCGTGTCGTTTCGATCCACGCTCCCGCGAGGGGAGCGACCTTTGCCCGTCGGAAATGGGCGTGAACGTCTTCATAGTTTCGATCCACGCTCCCGCGAGGGGAGCGACCGCCGGTATGCTGGAGAGACTGCTTGAAGGCGTGTTTCGATCCACGCTCCCGCGAGGGGAGCGACTGCCTTGGACCCGCCAATGCACGGCCTCCTTGGGGTTTCGATCCACGCTCCCGCGAGGGGAGCGACACCTGACCAATTGCAGGTAGTCCACTACGATCATGGTTTCGATCCACGCTCCCGCGAGGGGAGCGACCGATAGGGTCCATAGCCACTTCACCATCACCATAGTTTCGATCCACGCTCCCGCGAGGGGAGCGACACGTTGGCGTCAGGCTTGGGGCTGCTGTCCACCTGTTTCGATCCACGCTCCCGCGAGGGGAGCGACCGTCGATGTTCTGTTGCGGGTGGAGCGCGAGCTGGTTTCGATCCACGCTCCCGCGAGGGGAGCGACGCGGCGGCACCGATTGCGCCCTGATCGCCGCGACGGTTTCGATCCACGCTCCCGCGAGGGGAGCGACACGTCAACGGGGGCCGCTGGGACGGCAACTCCAGGTTTCGATCCACGCTCCCGCGAGGGGAGCGACCAAGCGCATCGGGCGCAGGGTCAAGCGTGGCGTTGTTTCGATCCACGCTCCCGCGAGGGGAGCGACTGTCATGTATAGCGCCTTTTGCGCCCACGGATCGGTTTCGATCCACGCTCCCGCGAGGGGAGCGACACCTGACATCCGCTCGATCCCTCCATGCCGCAAGTTTCGATCCACGCTCCCGCGAGGGGAGCGACGGTTGGTGGGGCTTCAAAATGGCACATGCTGTCGAGTTTCGATCCACGCTCCCGCGAGGGGAGCGACTTTCCGTTTGAGGCGCGTTACGCCTGCGGTGGGTTTCGATCCACGCTCCCGCGAGGGGAGCGACGCGACCTGCATGTCGATGTGGCGGGGTAACTTGGGGTTTCGATCCACGCTCCCGCGAGGGGAGCGACCCATGTAGTTACCAGCGAGCTGGGCCTGCGCTCCGTTTCGATCCACGCTCCCGCGAGGGGAGCGACAAGAGGCTGTAGAGGATCTTGCCGAGTGGTTCTGGTTTCGATCCACGCTCCCGCGAGGGGAGCGACTCGATAGCTGCCGACGCTGGATCAAGCTCTCCACGTTTCGATCCACGCTCCCGCGAGGGGAGCGACGCGCTCCCCTCGCCCGCGCCTGCGGTCAGCCCAAGTTTCGATCCACGCTCCCGCGAGGGGAGCGACATGTCGTCGTCACCTGTCAGCGGGGCGCTGTAGTTTCGATCCACGCTCCCGCGAGGGGAGCGACCAAAGGTGCACTCACCCGGATCGTTCAGACCCTGTTTCGATCCACGCTCCCGCGAGGGGAGCGACGGCCGATCCGGTAAGTGTCGCGGTAGGGGGCGGGGTTTCGATCCACGCTCCCGCGAGGGGAGCGACGTGGCGTGCTGCGCGGTGCGAGAGGTGCGGGGGTGTTTCGATCCACGCTCCCGCGAGGGGAGCGACATCGACCGCATGGCCGATGGCACGCCGCTTACCAGTTTCGATCCACGCTCCCGCGAGGGGAGCGACGCACGGCACCACCCTGCTGAGCGTACGTAACAAAGTTTCGATCCACGCTCCCGCGAGGGGAGCGACTTGGCGTGCACCGCAATCGACGCACATCGGCATAGTTTCGATCCACGCTCCCGCGAGGGGAGCGACAGCCGCGCCGGGTCAGACCCCGGCACCAGCGCTGTTTCGATCCACGCTCCCGCGAGGGGAGCGACGCAAATCACCGGGCTTCCAAGATCGCCAGTATGGTTTCGATCCACGCTCCCGCGAGGGGAGCGACCTGCCGGAGGTGGCGAATAGCCTGGTCGCGTATGTTTCGATCCACGCTCCCGCGAGGGGAGCGACCTGGCTCTCGCGTTCAGATCGGCGATATGGGCCTGTTTCGATCCACGCTCCCGCGAGGGGAGCGACGTCAGGCGGGATGCCCAGCGGGGCATGTGGATAGGGGTTTCGATCCACGCTCCCGCGAGGGGAGCGACCGACCTTTTTCTGATCTCAACGCTTGAGCGCGTTGTTTCGATCCACGCTCCCGCGAGGGGAGCGACCGAGGCGGAACGGCAAGCCCAAGCTGAGCGGGAGTTTCGATCCACGCTCCCGCGAGGGGAGCGACCGGCCCGCTCACATGCTCCCGACCTGACGACCGCGTTTCGATCCACGCTCCCGCGAGGGGAGCGACTCGCGCGCTTGCAGGTGGCCCTAGACTTGGTGGCGTTTCGATCCACGCTCCCGCGAGGGGAGCGACGAGCGGTATGACGACAACATCCGCAACGCCTATGTTTCGATCCACGCTCCCGCGAGGGGAGCGAC

>NZ_CP049811|1|1|2548610-2552136|CRT
CCCATTTTATATGACGACGGACAGGGAGCGAC	GATCGCGCCCTTTCATCGGTCGATACCTACATA
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	GAGCGGGTGCATTCGCCCTAGCCGCGTTCATGTC
GTTTCGATCCACGCTCCCGCCAGGGGAGCGAC	CATCCGCACCCGGCTGCAATACTCCAAACCGCTG
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	TCCAGCATCCCGTTAATCTCGGTCTGCAGTTCCT
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	ACGAGCAGATGTTTGATGAGGGATGGTGTATCTC
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	GTGGGCGATAGCGTGGCGCAGGCGATGCTTGTCA
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	GCGACCGAACCATCCGTCTCTCCAATATGGCTCC
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	GGCTGTCCCTGATCACGGTCGGCGCCGTGCTGAT
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	GCAAGCGCATCGGGCGCAGGGTCAAGCGTGGCGTT
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	AGAAGCGTGGACTGAAGGCCAGCGCCGGCCAGGG
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	CGGGGGGGTGGGTCACACAGTGCCCCCTAACCTA
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	GCTCACACGAGTACGCCGCAACACGTGCAGGAAT
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	CCGTGGCAGTGACCGGCAATCCGATTCAATCGTGCT
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	CGGTGCGCCCAGTCACTGGCGGGCTTTTTATTC
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	GCGGAGGGTGCCGAGTGATGCCTTTCCACGCTCA
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	ATCCGGGGGGGAATTCAGGCCTCGGGCGTGCCCAT
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	GGCAGGCGCGCGCAGGATCGGGCGCTGCGTGTC
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	CTTTGCCCGTCGGAAATGGGCGTGAACGTCTTCATA
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	CGCCGGTATGCTGGAGAGACTGCTTGAAGGCGT
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	TGCCTTGGACCCGCCAATGCACGGCCTCCTTGGG
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	ACCTGACCAATTGCAGGTAGTCCACTACGATCATG
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	CGATAGGGTCCATAGCCACTTCACCATCACCATA
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	ACGTTGGCGTCAGGCTTGGGGCTGCTGTCCACCT
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	CGTCGATGTTCTGTTGCGGGTGGAGCGCGAGCTG
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	GCGGCGGCACCGATTGCGCCCTGATCGCCGCGACG
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	ACGTCAACGGGGGCCGCTGGGACGGCAACTCCAG
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	CAAGCGCATCGGGCGCAGGGTCAAGCGTGGCGTT
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	TGTCATGTATAGCGCCTTTTGCGCCCACGGATCG
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	ACCTGACATCCGCTCGATCCCTCCATGCCGCAA
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	GGTTGGTGGGGCTTCAAAATGGCACATGCTGTCGA
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	TTTCCGTTTGAGGCGCGTTACGCCTGCGGTGG
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	GCGACCTGCATGTCGATGTGGCGGGGTAACTTGGG
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	CCATGTAGTTACCAGCGAGCTGGGCCTGCGCTCC
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	AAGAGGCTGTAGAGGATCTTGCCGAGTGGTTCTG
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	TCGATAGCTGCCGACGCTGGATCAAGCTCTCCAC
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	GCGCTCCCCTCGCCCGCGCCTGCGGTCAGCCCAA
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	ATGTCGTCGTCACCTGTCAGCGGGGCGCTGTA
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	CAAAGGTGCACTCACCCGGATCGTTCAGACCCT
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	GGCCGATCCGGTAAGTGTCGCGGTAGGGGGCGGG
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	GTGGCGTGCTGCGCGGTGCGAGAGGTGCGGGGGT
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	ATCGACCGCATGGCCGATGGCACGCCGCTTACCA
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	GCACGGCACCACCCTGCTGAGCGTACGTAACAAA
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	TTGGCGTGCACCGCAATCGACGCACATCGGCATA
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	AGCCGCGCCGGGTCAGACCCCGGCACCAGCGCT
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	GCAAATCACCGGGCTTCCAAGATCGCCAGTATG
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	CTGCCGGAGGTGGCGAATAGCCTGGTCGCGTAT
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	CTGGCTCTCGCGTTCAGATCGGCGATATGGGCCT
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	GTCAGGCGGGATGCCCAGCGGGGCATGTGGATAGGG
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	CGACCTTTTTCTGATCTCAACGCTTGAGCGCGTT
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	CGAGGCGGAACGGCAAGCCCAAGCTGAGCGGGA
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	CGGCCCGCTCACATGCTCCCGACCTGACGACCGC
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	TCGCGCGCTTGCAGGTGGCCCTAGACTTGGTGGC
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	GAGCGGTATGACGACAACATCCGCAACGCCTAT
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC

>NZ_CP049811|1|1|2548675-2552136|PILER-CR
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	GAGCGGGTGCATTCGCCCTAGCCGCGTTCATGTC
GTTTCGATCCACGCTCCCGCCAGGGGAGCGAC	CATCCGCACCCGGCTGCAATACTCCAAACCGCTG
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	TCCAGCATCCCGTTAATCTCGGTCTGCAGTTCCT
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	ACGAGCAGATGTTTGATGAGGGATGGTGTATCTC
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	GTGGGCGATAGCGTGGCGCAGGCGATGCTTGTCA
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	GCGACCGAACCATCCGTCTCTCCAATATGGCTCC
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	GGCTGTCCCTGATCACGGTCGGCGCCGTGCTGAT
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	GCAAGCGCATCGGGCGCAGGGTCAAGCGTGGCGTT
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	AGAAGCGTGGACTGAAGGCCAGCGCCGGCCAGGG
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	CGGGGGGGTGGGTCACACAGTGCCCCCTAACCTA
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	GCTCACACGAGTACGCCGCAACACGTGCAGGAAT
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	CCGTGGCAGTGACCGGCAATCCGATTCAATCGTGCT
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	CGGTGCGCCCAGTCACTGGCGGGCTTTTTATTC
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	GCGGAGGGTGCCGAGTGATGCCTTTCCACGCTCA
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	ATCCGGGGGGGAATTCAGGCCTCGGGCGTGCCCAT
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	GGCAGGCGCGCGCAGGATCGGGCGCTGCGTGTC
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	CTTTGCCCGTCGGAAATGGGCGTGAACGTCTTCATA
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	CGCCGGTATGCTGGAGAGACTGCTTGAAGGCGT
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	TGCCTTGGACCCGCCAATGCACGGCCTCCTTGGG
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	ACCTGACCAATTGCAGGTAGTCCACTACGATCATG
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	CGATAGGGTCCATAGCCACTTCACCATCACCATA
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	ACGTTGGCGTCAGGCTTGGGGCTGCTGTCCACCT
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	CGTCGATGTTCTGTTGCGGGTGGAGCGCGAGCTG
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	GCGGCGGCACCGATTGCGCCCTGATCGCCGCGACG
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	ACGTCAACGGGGGCCGCTGGGACGGCAACTCCAG
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	CAAGCGCATCGGGCGCAGGGTCAAGCGTGGCGTT
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	TGTCATGTATAGCGCCTTTTGCGCCCACGGATCG
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	ACCTGACATCCGCTCGATCCCTCCATGCCGCAA
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	GGTTGGTGGGGCTTCAAAATGGCACATGCTGTCGA
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	TTTCCGTTTGAGGCGCGTTACGCCTGCGGTGG
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	GCGACCTGCATGTCGATGTGGCGGGGTAACTTGGG
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	CCATGTAGTTACCAGCGAGCTGGGCCTGCGCTCC
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	AAGAGGCTGTAGAGGATCTTGCCGAGTGGTTCTG
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	TCGATAGCTGCCGACGCTGGATCAAGCTCTCCAC
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	GCGCTCCCCTCGCCCGCGCCTGCGGTCAGCCCAA
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	ATGTCGTCGTCACCTGTCAGCGGGGCGCTGTA
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	CAAAGGTGCACTCACCCGGATCGTTCAGACCCT
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	GGCCGATCCGGTAAGTGTCGCGGTAGGGGGCGGG
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	GTGGCGTGCTGCGCGGTGCGAGAGGTGCGGGGGT
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	ATCGACCGCATGGCCGATGGCACGCCGCTTACCA
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	GCACGGCACCACCCTGCTGAGCGTACGTAACAAA
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	TTGGCGTGCACCGCAATCGACGCACATCGGCATA
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	AGCCGCGCCGGGTCAGACCCCGGCACCAGCGCT
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	GCAAATCACCGGGCTTCCAAGATCGCCAGTATG
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	CTGCCGGAGGTGGCGAATAGCCTGGTCGCGTAT
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	CTGGCTCTCGCGTTCAGATCGGCGATATGGGCCT
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	GTCAGGCGGGATGCCCAGCGGGGCATGTGGATAGGG
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	CGACCTTTTTCTGATCTCAACGCTTGAGCGCGTT
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	CGAGGCGGAACGGCAAGCCCAAGCTGAGCGGGA
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	CGGCCCGCTCACATGCTCCCGACCTGACGACCGC
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	TCGCGCGCTTGCAGGTGGCCCTAGACTTGGTGGC
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	GAGCGGTATGACGACAACATCCGCAACGCCTAT
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC

>NZ_CP049811|1|1|2548675-2552136|CRISPRCasFinder
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	GAGCGGGTGCATTCGCCCTAGCCGCGTTCATGTC
GTTTCGATCCACGCTCCCGCCAGGGGAGCGAC	CATCCGCACCCGGCTGCAATACTCCAAACCGCTG
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	TCCAGCATCCCGTTAATCTCGGTCTGCAGTTCCT
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	ACGAGCAGATGTTTGATGAGGGATGGTGTATCTC
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	GTGGGCGATAGCGTGGCGCAGGCGATGCTTGTCA
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	GCGACCGAACCATCCGTCTCTCCAATATGGCTCC
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	GGCTGTCCCTGATCACGGTCGGCGCCGTGCTGAT
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	GCAAGCGCATCGGGCGCAGGGTCAAGCGTGGCGTT
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	AGAAGCGTGGACTGAAGGCCAGCGCCGGCCAGGG
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	CGGGGGGGTGGGTCACACAGTGCCCCCTAACCTA
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	GCTCACACGAGTACGCCGCAACACGTGCAGGAAT
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	CCGTGGCAGTGACCGGCAATCCGATTCAATCGTGCT
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	CGGTGCGCCCAGTCACTGGCGGGCTTTTTATTC
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	GCGGAGGGTGCCGAGTGATGCCTTTCCACGCTCA
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	ATCCGGGGGGGAATTCAGGCCTCGGGCGTGCCCAT
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	GGCAGGCGCGCGCAGGATCGGGCGCTGCGTGTC
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	CTTTGCCCGTCGGAAATGGGCGTGAACGTCTTCATA
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	CGCCGGTATGCTGGAGAGACTGCTTGAAGGCGT
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	TGCCTTGGACCCGCCAATGCACGGCCTCCTTGGG
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	ACCTGACCAATTGCAGGTAGTCCACTACGATCATG
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	CGATAGGGTCCATAGCCACTTCACCATCACCATA
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	ACGTTGGCGTCAGGCTTGGGGCTGCTGTCCACCT
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	CGTCGATGTTCTGTTGCGGGTGGAGCGCGAGCTG
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	GCGGCGGCACCGATTGCGCCCTGATCGCCGCGACG
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	ACGTCAACGGGGGCCGCTGGGACGGCAACTCCAG
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	CAAGCGCATCGGGCGCAGGGTCAAGCGTGGCGTT
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	TGTCATGTATAGCGCCTTTTGCGCCCACGGATCG
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	ACCTGACATCCGCTCGATCCCTCCATGCCGCAA
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	GGTTGGTGGGGCTTCAAAATGGCACATGCTGTCGA
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	TTTCCGTTTGAGGCGCGTTACGCCTGCGGTGG
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	GCGACCTGCATGTCGATGTGGCGGGGTAACTTGGG
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	CCATGTAGTTACCAGCGAGCTGGGCCTGCGCTCC
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	AAGAGGCTGTAGAGGATCTTGCCGAGTGGTTCTG
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	TCGATAGCTGCCGACGCTGGATCAAGCTCTCCAC
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	GCGCTCCCCTCGCCCGCGCCTGCGGTCAGCCCAA
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	ATGTCGTCGTCACCTGTCAGCGGGGCGCTGTA
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	CAAAGGTGCACTCACCCGGATCGTTCAGACCCT
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	GGCCGATCCGGTAAGTGTCGCGGTAGGGGGCGGG
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	GTGGCGTGCTGCGCGGTGCGAGAGGTGCGGGGGT
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	ATCGACCGCATGGCCGATGGCACGCCGCTTACCA
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	GCACGGCACCACCCTGCTGAGCGTACGTAACAAA
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	TTGGCGTGCACCGCAATCGACGCACATCGGCATA
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	AGCCGCGCCGGGTCAGACCCCGGCACCAGCGCT
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	GCAAATCACCGGGCTTCCAAGATCGCCAGTATG
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	CTGCCGGAGGTGGCGAATAGCCTGGTCGCGTAT
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	CTGGCTCTCGCGTTCAGATCGGCGATATGGGCCT
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	GTCAGGCGGGATGCCCAGCGGGGCATGTGGATAGGG
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	CGACCTTTTTCTGATCTCAACGCTTGAGCGCGTT
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	CGAGGCGGAACGGCAAGCCCAAGCTGAGCGGGA
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	CGGCCCGCTCACATGCTCCCGACCTGACGACCGC
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	TCGCGCGCTTGCAGGTGGCCCTAGACTTGGTGGC
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC	GAGCGGTATGACGACAACATCCGCAACGCCTAT
GTTTCGATCCACGCTCCCGCGAGGGGAGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049811.1\|WP_166192469.1\|2553623_2554244_-\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NZ_CP049811.1\|WP_166194218.1\|2556965_2557637_-\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
NZ_CP049811.1\|WP_166192454.1\|2533234_2536564_-\|DNA-polymerase-III-subunit-alpha	unknown	unknown	gnl\|CDD\|235553
NZ_CP049811.1\|WP_166192463.1\|2552303_2552594_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP049811.1\|WP_166192442.1\|2529476_2530634_+\|integrase	unknown	unknown	gnl\|CDD\|271184
NZ_CP049811.1\|WP_166194215.1\|2536563_2538051_-\|DNA-polymerase-Y-family-protein	unknown	unknown	gnl\|CDD\|176458
NZ_CP049811.1\|WP_166192451.1\|2532540_2532849_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049811.1\|WP_166192457.1\|2538854_2544398_-\|RecQ-family-ATP-dependent-DNA-helicase	unknown	unknown	gnl\|CDD\|223588
NZ_CP049811.1\|WP_166192472.1\|2554243_2555146_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
NZ_CP049811.1\|WP_166192439.1\|2521292_2523467_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	unknown	unknown	gnl\|CDD\|224446
NZ_CP049811.1\|WP_166192460.1\|2545212_2545872_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049811.1\|WP_166194213.1\|2523469_2524078_+\|Isoquinoline-1-oxidoreductase-subunit	unknown	unknown	unknown
NZ_CP049811.1\|WP_166192448.1\|2531448_2531724_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049811.1\|WP_166194224.1\|2562070_2562205_-\|ribbon-helix-helix-protein,-CopG-family	unknown	unknown	unknown
NZ_CP049811.1\|WP_166192445.1\|2530608_2530839_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049811.1\|WP_166194221.1\|2557762_2559973_-\|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
NZ_CP049811.1\|WP_166192474.1\|2555142_2556969_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|378245
NZ_CP049811.1\|WP_166192466.1\|2552598_2553627_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP049811.1\|WP_166192479.1\|2564684_2565485_+\|SPOR-domain-containing-protein	unknown	unknown	gnl\|CDD\|335993
NZ_CP049811.1\|WP_166192477.1\|2561228_2561477_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP049811.1\|WP_166192469.1\|2553623_2554244_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	7.63994e-46
NZ_CP049811.1\|WP_166194218.1\|2556965_2557637_-\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	9.82306e-110
NZ_CP049811.1\|WP_166192454.1\|2533234_2536564_-\|DNA-polymerase-III-subunit-alpha	gnl\|CDD\|235553	PRK05672, dnaE2, error-prone DNA polymerase; Validated.	0
NZ_CP049811.1\|WP_166192463.1\|2552303_2552594_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.50529e-31
NZ_CP049811.1\|WP_166192442.1\|2529476_2530634_+\|integrase	gnl\|CDD\|271184	cd01184, INT_C_like_1, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain. Tyrosine recombinase (integrase) belongs to a DNA breaking-rejoining enzyme superfamily. The catalytic domain containing six conserved active site residues. The recombination reaction involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	5.51264e-14
NZ_CP049811.1\|WP_166192466.1\|2552598_2553627_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	2.69885e-166
NZ_CP049811.1\|WP_166192439.1\|2521292_2523467_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	gnl\|CDD\|224446	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion].	1.95776e-106
NZ_CP049811.1\|WP_166192472.1\|2554243_2555146_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	9.16128e-142
NZ_CP049811.1\|WP_166192457.1\|2538854_2544398_-\|RecQ-family-ATP-dependent-DNA-helicase	gnl\|CDD\|223588	COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair].	7.32219e-117
NZ_CP049811.1\|WP_166194215.1\|2536563_2538051_-\|DNA-polymerase-Y-family-protein	gnl\|CDD\|176458	cd03468, PolY_like, DNA Polymerase Y-family. Y-family DNA polymerases are a specialized subset of polymerases that facilitate translesion synthesis (TLS), a process that allows the bypass of a variety of DNA lesions. Unlike replicative polymerases, TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. The active sites of TLS polymerases are large and flexible to allow the accomodation of distorted bases. Expression of Y-family polymerases is often induced by DNA damage and is believed to be highly regulated. TLS is likely induced by the monoubiquitination of the replication clamp PCNA, which provides a scaffold for TLS polymerases to bind in order to access the lesion. Because of their high error rates, TLS polymerases are potential targets for cancer treatment and prevention.	1.32372e-62
NZ_CP049811.1\|WP_166194221.1\|2557762_2559973_-\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	3.05994e-49
NZ_CP049811.1\|WP_166192474.1\|2555142_2556969_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0
NZ_CP049811.1\|WP_166192479.1\|2564684_2565485_+\|SPOR-domain-containing-protein	gnl\|CDD\|335993	pfam05036, SPOR, Sporulation related domain. This 70 residue domain is composed of two 35 residue repeats found in proteins involved in sporulation and cell division such as FtsN, DedD, and CwlM. This domain is involved in binding peptidoglycan. Two tandem repeats fold into a pseudo-2-fold symmetric single-domain structure containing numerous contacts between the repeats. FtsN is an essential cell division protein with a simple bitopic topology, a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. These repeats lay at the periplasmic C-terminus. FtsN localizes to the septum ring complex.	3.38697e-08

>NZ_CP049811.1|WP_166192460.1|2545212_2545872_-|hypothetical-protein
MQVTNVAIVDDFLMQVEAEAAKEQIQNDRVPIDQLVFLTAQTQMWLFAVYELLRTWRQRVSDALKLHINGGLQLKIDHLRKRDGPADFGSQIRARQLEAVRDDPILVENLRSDQRRVHVIFGTIEALRVSIAKHEVAGVRNSIAHMPGYARLDLMTGSLNYELSMGPVIYDYVSRRGIADGIRAILDGDPPTVENIASYEEAMKAMRAGLPGFHFSREF
>NZ_CP049811.1|WP_166192457.1|2538854_2544398_-|RecQ-family-ATP-dependent-DNA-helicase
MRHTEILSHCLSIDLEVDPSKAKIFAIAAVRADDRPALKAMGGISDEFLDQLEAQIGDVAHPIGHNFLNHDLKHLVATKPRLAKIIQAPIDTLWLNPLAFPRNPYHHLVKHYHDGRLETGHVNDPELDARLVFDVLANQLDAFVKLSKDEPDALTAYHYLSTRMERAGGFDAVFRYVRGRECPDYEQARMAIMRMLDGRACGVRIEQALTRLSSPQNGWPMAYALSWITVASGDPVMPPWVRAQFREASLIVKHLRDTSCKDPNCAWCAEQNDPVRALERWFGFPSFRPKPVDPEGRPLQERIVDEAMSGNSLLGILPTGTGKSLCYQVPALSRFDTIGALTVVISPLVALMADQVHGMERAGISCSVTINGMMSMPERQDALNKVRMGDAGILIISPEQLRSPSIRNVLAQREVGLWAIDEAHCVSKWGHDFRPDYRYLGRFIKEFSGDMPPAPMICLTATAKPEVVADIISHFQTKAGIELLPLDGGASRTNLAFDVRPTTKATKLSDVLTVLLELLPTDGRSGAAVYCSSRKETERVAAFLKSQGMDAAHFHAGMSPDDKQTVQEQFRVGELRVIAATNAFGMGIDKPDIRLVIHADIPGSLENYLQEAGRAGRDREDAHCVLLFAADDVERQFRLTASSRLARHEIGAILKALRRIDDRTKKTGKVVATSGEIVRSEKDQTFERDSTTDDTRVKTAVSWLEEAHLVSREENRVQVFPSSLRVRSVDEAKSRLAEADITQSHRRQLLSIVKHLMSAPADEGVSTDELCGVAGIPPGALPRAMATLESLGIARNDVAITVFVHVGVAHSSAQRLAQASALEADLIALMQELAPDLDDRTPVPLNLAEACQRLRDKAHPDVRPDAIDKLVRGMAQDGRTQEGGQGNISLRKASRNTLLVTLVRSWRVIQETARVRWLAAELMLTYLTGRLNKGARGKDQQVETTVGDLLAQLTQDAFLKGVGVRDMTKLMERALMWLHEQGVLTLGKGLTAFRSAMTVHLDPAGGQFTQAHFTPLEEHYSEQTLQTHVMAAYAETGMRMMTDATRLSEDYFLLNKEQFMKRWMPGVGREVRRQTTSASWDAIVEKLGNKVQQEIVTDDRDRTNVLVLAGPGSGKTRVLVHRIAYLLRMKREDPQGILVLAYNRHAAAEIRVRLRALVGDDAMGVTVSTCHSLAMKLVGASFVGQRADTADFDNIVMEAVRQLEGEGLSKAEAEAQRDTLIQGYRWILVDEYQDIGPEEYQLISAIAGRSLDDADMKLSLFAVGDDDQNIYAFNGASIEFIRKFEKDYKARPAFLVENYRSTRHIISAANTVISAAPDRMKLEHEIRINAYRANTPEGGVLAGADGVAQGRVQLLDVPNGDIPQAMAAVDELVRLSRLDPEWSWARTAVISRDWRKLDAVRTYAEQLKIKVEMANEDLPNIWRLRETQALVSGLRQRQGELLGVADILDILNEQAPNKWIDLLAEGIAELARELKAKAMPVPDIVEWLAEWSRDTRGEQRGLLLLTAHRAKGLEFDHVAILNGGWDNPSKNEDRDAPRRLFYVAMTRAQVSLTVMTSGAHALLKPSTPSIIQRKVSPDNPIGVPPARVYHLPNLKYSNLSFPSRYGPRHEIHDAIRTCKVGDPLRLEYRSSAWEFLDRNGCVLGRMSKSWEYPSGRVLYSGTVGAVVHWRKSDGDERFAHYARRDTWETVLPELVFAPQRQAAADEDTSETFSTAPTRPISASGGAADKKGDLDRIPMPDELAVLSELAQRIYTDSRSWGELIARFSEHGLEVSAKSGGLVVKDSIGGFQICKMSSLGLKYIEMVRYFGEGFPGHPSPGIADRALGRRGATKSTPPAAGQSIDIIDD
>NZ_CP049811.1|WP_166194215.1|2536563_2538051_-|DNA-polymerase-Y-family-protein
MERWRIVARRDRTLPGNDVPVVLARDGAHGPVIHAASTTATARGIRSGARIVDVQAIHPDLHVEPADAQGDAALLDRLVFWARRWGPWSARDGADGLFVDVTGVAHLFGGETALLDDIAGRFTMQGISVRLAIAPTSLAAQAFARHGEERVICGPDDLGARLALLSVCALRLGFDTERLLDRLGLKTIGALNNMPRVSLMRRFANLPQGRNPLIQLDRAMGREADPLDAPVDQVHLIARSRLAEPVMDAGPYLPDLAWQLCTDLEASGRGARALRLTIYCVDGEARWMDVAFARASRDPTHMLRLLNGKLDGVDAGFGFDMLTLEALRTEPLEATQTGLDGAHDADADVAGLLDRLSARLGARHVSWSHWEESHLPDRMERRVTALGNDPQVPPVVTAERPIRLLDRPEEVTVVYAVPEGPPAQFIWRRVTLRTARQSGPERIAPEWWRDKPGSRLRDYYKVEVEDGRRFWLYREGVIGDGRGEEPRWFLHGFFA
>NZ_CP049811.1|WP_166192454.1|2533234_2536564_-|DNA-polymerase-III-subunit-alpha
MPQQEGHKRVLLAEDNRFTCNPPASYVELGLASCFSFLHAASTASELCATANHLGYDAMGIADRNTLAGVVRVHTEAATACIRPMIGVRLVLLCGAEFLAYPRDRAAYARLSTLLSRGKMVTADGDWQAKGETHLTLEMLADHAEGLHLIAMPDEDIDQFEAAFSRLARALPELRYIGASYRYRSDDVARINRLDTLARAHGLGILATNDVLYHIPDRRPLQDVMTCIREGITIQRAGFRLLANAERHLKSPAQMCRLFARWPHAIAATRKVADDITFTLNDLRYEYPHEIVPEGRSPMQELQRLTWQGAAARYPNGVPDKVREVLAKEFDLIARKDIARYFLTIRDIVHFAREEATPPILCQGRGSAANSAVCYCLGITSVDPTAHDLLFERFLNEARDEPPDIDVDFEHERREEVIQYMYAKYGRERAGLCATVIHYRPRSAICEVGKGMGLSEDITSKLASTVWGSFEGDVDDQRAKEAGLDLTDPYLRMVLKLARQMIGMPRHLSQHVGGFILTERPLTEMVPIGNGAMPERSFIEWDKDDIEALRIFKVDILALGMLTCIAKGFDLIEAHHGSRYDLATVPIEDREPDDRRPTYDMLCRGDSLGVFQVESRAQMAMLPKLRPRVFYDLVIEVAIVRPGPIQGDMVHPYLRRRQRLEPVVYPAPGPEHPQDELIRILGRTLGVPIFQEQAMKIAMDAAQFSAKESDELRKAMATFRSRGTIEKLQEKMVGRMTARGYDPHFAQRCFDQIKGFGEYGFPESHAASFAKLVYVSSWMKCHYPAAFACALLNSQPMGFYAPAQIVRDARDHGVEVRMVDISYSDWDCTLEPCADGFALRIGLRQIDGMHREAGLRIMAARDSAFANVEALKGRAGLDVGSIRRLAAADAMRSMGLDRRQALWQVQALRDAPSLPIFEHADAATAGPEPDVALPAMRRAEHVVADYQTLRLSLKAHPMSFYRASLTRQGFTCSDDLTRLRHGAKVSLAGLVLVRQKPGSAKGVCFITLEDETGVANLVIWPKMFEAYRPIIMAARLLVVQGRVQTDGRVIHIVADHLEDRSLRLDDLSAHSMPSVTTRGDHPTNPLPGQVGVRAHPRNVRVIPKSRDFH
>NZ_CP049811.1|WP_166192451.1|2532540_2532849_-|hypothetical-protein
MSNAQTKFTVRIAPEALAQIDVLRAQHGFTSRAAYLEAAGLAYGAESSADDIIRHLAPVSATLHQLLRVANGELSLIKPDDVKKTLREVRKTMLLARESLTP
>NZ_CP049811.1|WP_166192448.1|2531448_2531724_-|hypothetical-protein
MTQPQPTALKSDAEVLTSKIDEMRVDIRKLMPLLNLLEPTNPDQMTSFAERLLAFMQQIDEGYQNQAEAFHALRTEVRDINAKLNFLIEGS
>NZ_CP049811.1|WP_166192445.1|2530608_2530839_-|hypothetical-protein
MGQCNTAEIDVARIERALEDVALLIQHDLVYLPIFERLERELEAARTRQDARSRATRILAARSRRTGRATPDDPEP
>NZ_CP049811.1|WP_166192442.1|2529476_2530634_+|integrase
MLAGHSEDAQVRFRAARDLADMRGFAFLSAATVAERPLQEVLARVEAMRAPDGWPDPVIASGVLGGANEPTLRLSDLVEHAETLSVQDNRFKSAEQMRLWRNPRVRAVRNLIAALGGDRPVVEIGPVEARQHRRWWQSRIADEGQSSQTANKDFHYISGMLARFYEDIDHADPPRPYMGVSIRDRHAKVQRKDEVPVAYITDRWFAPGAFDGLNDEARDILLIALETGCRQSEIHDLPASAFQLDADVPHLCVRNEAAHDPDARREIKNRHSERDVPLVGVALAAAQRHPAGFPRYRNKRSYSAIVNKYLKTHDLVPEGVTVGGLRHTWESRLKAAGLHTDDRGELMGHSVKALRGREHYGDEMDLERRQALAASIAFTVPDHLA
>NZ_CP049811.1|WP_166194213.1|2523469_2524078_+|Isoquinoline-1-oxidoreductase-subunit
MWKVSTVALIAILSAASSGWSEEVNGLRTVDEFDGFADETARSQALFEEMAKVIQHPRCLNCHPADNTPRQGMEMRIHEPPVVRGDSGFGAPGMRCNTCHGSENVDYVSGDGSIPGHSPWMLAPIEQAWIGKTVAEICAQLKDPERNGGRTLAELHEHNAHDGLVGWGWTPGEGRESAPGTQELFGELTNAWIEAGAACPEG
>NZ_CP049811.1|WP_166192439.1|2521292_2523467_+|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit
MTEHTRRQFLSASAGLVVAVTLPLPGRAQSGAAAILGQDAPTQGDFAPNAFIRVAPDDTVTVLIKHIEFGQGPYTGLSTLVAEEMDADWSQMRAEAAPANAELYANLFFGMQGTGGSTAMANSYMQMRKAGAAARAMLVAAAADEWGVPAGEIEVAQGVVRHGASDRSARFGELAERAAGMTVPEDPPLKDPGQFKLIGTEVQKLDTKPKSTGQATFTLDVYREGMETVVVRHPPFFGGRVANFDAAPAMAVPGVVAVHEIPSGIAVYATSTAAALKGRDALDVEWDDTEAETRSSEEMLQAFSEATAAETLVAEEAGDVDAALEGAEQVIETEFRFPYLAHAPLETLDAVIEMRDGVAELWMGSQFPSLDKPTLAQTLGIDPSNVIINVMFAGGSFGRRAQPDAHLAAEIAAIAKAAGRNGSWKLLWTREDDLHGGYYRPMTVHRMRGGIDAEGNIVGWTDVLANQSIMAGGPMEAMMDKGLDPTAYEGATKMPYDLVNFRTSWARMESPVPVLWWRSVGHTHTGYATEVFLDMLLEAAGKDPVQGRLDLLRADAGRDRAVLERVAAMAGWDGQRVKGDRGYGIALHESFNTYVAQIAEVSNDNGMPRVHRVWCAVDCGVAVNPGVIRAQMEGGIGYGLTALLYSQITLLPGGRIAENNFDDYRMLRINEMPAVEVEILDTDHDPSGVGEPGTPPIGPAVGNAWRALTGQTVTRLPFTVGVQS
>NZ_CP049811.1|WP_166192463.1|2552303_2552594_-|CRISPR-associated-endonuclease-Cas2
MMVLVTYDVRTDSKEGRRRLRRVARACEDWGQRVQFSIFECDLDPAQWSALRARLIDTIDPETDSLRFYMLGREWRRRVEHIGAKPSTDMDGLLIV
>NZ_CP049811.1|WP_166192466.1|2552598_2553627_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MKKLLNTLYVTSEGAYLRKDGETVAVDIDGATRARAPAHLLGQIVCFGRVAVSPTLMGFASEAGITISFLGYSGKLQARVEGPQTGNVLLRRAQHEMTKQQAALPVARAFVAAKVANQRALLRRHLRDYANAPGIDIVDNAQRRLADAARYALTAPDLDVLRGQEGEAAHAYWTAFPHLFRTEDLTFRFAGRNRRPPRDAVNAVLSFLYVLTSLDARAACESHGLDPQMGFLHRDRPGRMSLALDLMEEMRAPLADRVCLSLVNRRQLSSSDFRTEETGAVLLNDIGRNTVLKAYQERKRVELKHAWLDERIALGLVPQIQAQLLARHLRGDLDAYPAWIWS
>NZ_CP049811.1|WP_166192469.1|2553623_2554244_-|CRISPR-associated-protein-Cas4
MVDTSLPLSALQHWLFCPRQCALIHIERVWAENRLTAEGRILHERADAGRPESRNGIRTLRAVQLASVRYGLHGVADVVEMRGTSPFPVEYKRGRPKAHRADEVQLCAQAICLEEMSGQSIPEGALFYGKTRRRQIITLNVSLRDLTLRVASEVRDAIQKGLLPPPVFEAKRCSACSMYNLCRPMRSCVVGPNWVADQIAQAGVPE
>NZ_CP049811.1|WP_166192472.1|2554243_2555146_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MTAVTNRYDFVLFFDVENGNPNGDPDAGNLPRMDPETSQGLVTDVSLKRKLRNYVAEAKSEVPGHAIYMQEGVVLNQQHALAYEAEGLKSEAKKKPKKIEDATRITDWMCANFWDIRTFGAVMTTEVNAGQVRGPVQLTFAKSAEPIMPLEVSITRSSVTNVKDADKERTMGRKHVVPYGLYRAHGFINANLARRTGFSEDDLVLLWASFRDMFEHDRSAARGMMAARRLIAFRHDSALGNAQAHKLFDRVTVHRAHEGSTLPVGDGGTHNWPVARAFTDYAIRLDDADLPEGIEIIEPF
>NZ_CP049811.1|WP_166192474.1|2555142_2556969_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MTILAELAALYDRMPDLPRPGYSREAIGGEIVLRQDGTVVEINVLAAPDEKGKLRPRSISVPAAIKRASGIQPNLFWDKSAYVLGVIAAMGDDGKPLLDDLGHGVAGQGKRTATEHAAFVSVHTDLLVDVAMPSLIAFRTFLERWSWQDFAEYGYSPKLLDQNLVFRIQGDTQFLHDLPEVAALLAVQAEGGEICLVSGEIAPVARLHPSIKGVMGAQSSGASLVSFNDLAYESHGKKQGDNAPVSAQVAFAYGTALNALLARGSGQTLRVGDATVVFWVEAATPDQAVATSWLFAEALSPSPPEDADTAQNKVSAELVAIARGRWQDAPDYDPETRVFVLGLAPNAARLSVRFWHPGRLQDFAERIATFWDDLAIEPSPWLGLDGVSRPPAAWRLLYDIAALGDAKNIPPLLGGALMRSILTGANYPRMLLSSVIGRLRVEGTPTDRFSDGRRAAIIRAVLTRNTTQEVPMALDETSEDPAYVLGRLFGAFTYAERSYADRGATIRDKYMGGASATPARIFPMLMKGYEHNRAGLAKAGGQKVGAGIKADKAIAAILAKLPGDGVLPSALPLEDQGRFFIGFYHQLSAFYQKAEDSIFDDTLDGEIE
>NZ_CP049811.1|WP_166194218.1|2556965_2557637_-|type-I-C-CRISPR-associated-protein-Cas5
MTSFGVKIHVWGDYACFTRPEMKVERVSYDVMTPSAARGILEAIHWKPAVRWVVDRIHVLRPIRFDNIRRNEVGAKVSDRNARAAERSGDLSTLGIDVIAKRQQRAMLALRDVAYGIEAHFEMTDRAGPGDNPGKHREMFMRRAAKGQCFHRPCLGVREFAADFELVDEFPQTALSPDARNRDLGWMLYDIDYQNDRRSAFFHAVMEDGVIDVAAAARKGLAS
>NZ_CP049811.1|WP_166194221.1|2557762_2559973_-|CRISPR-associated-helicase-Cas3'
MIYAHTVQGRPVSEWETLEDHARAVAIRASAFALPFEGSQAAGLLGWTHDLGKMKSRFQEKLMGAHNGESHSTEGAKFLIDRHGGLGSLLAACVAGHHSGLPDISDLVRRLKDTPALEPPDWMPNPEPLVRSGPMRGMPSHFSVQFMIRMLFSCLIDADELETEAFYTVQEGGSVDRTPARVTPAHRDAFDRYLEKFTNATGLVNRLRSEILVHARAAAAQKTGLFTLTVPTGGGKTLTSLGFALDHALANDLERVIHVIPYTSIVEQTADVFSRVLGPDQVVEHHSSFDWDGVTDDEDLKRLRSVTRNWDAPVVVTTAVQFFESLFAARKRRCAKLHNLSRSVIVIDEAQTMPRRFLRPCLAAISELVEHYGATVVLSTATQPVLTRKKGLDVPEALENVCELAPDPPRLYRALCRTRVIDAGPLDDEALKKRIERAPQVLAIVNNRRHARALFEQIQNSNGARHLSTMMTPAHRRAVLADVRARLDAKLPVRLISTSLVEAGVDVDFPIVLRAAAGIDSIAQAAGRCNREGKLSGLGEVIVFTPTADGSSPPEDVAQMAAIGAKVLAEHRDDPLSQEAVAAYFRDLLWSQGKEALDAALVGAEGSAQKIGILKTIAESGNRYMFPFDQIARAFRLINDAQAPIIIRGGTWGIDDDLLSKLEWAEGAGGIARALQPYVVNVPHRIRLELEQTRAASIWREDLFGREFLLLDHKELYDEHAGLRLERFDEMGTLIL
>NZ_CP049811.1|WP_166192477.1|2561228_2561477_+|hypothetical-protein
MDLKTKDRNVRPKIDFDNSVPLYNHEHQRPDLYYFASLLRDRSDDDEDIARFKMAFLLAGIDIGTLDRDGTRWEAGQTGLLH
>NZ_CP049811.1|WP_166194224.1|2562070_2562205_-|ribbon-helix-helix-protein,-CopG-family
MVRMPTSLIERVDHARRAETDLPSRPEMIRRIVEEWFETESDDA
>NZ_CP049811.1|WP_166192479.1|2564684_2565485_+|SPOR-domain-containing-protein
MAVTACEVHEGPQAATPTQNIVDRAVEPTAQRDGATPRPDLFALRTLAAWDGRPSLGGAWIAHPDVVSAERASITEISTGRTITAALFRRDPSIPGPPFQLSADAAQQLGVTPGVPVEVEVVALRFDTTAPAPSTSQDVVADIAEPMQATIIDIPDTAPDIPANMPDVEPVAPVVAAPQPATVPPSPPAPGAVPERPYMQVGTFGVASNATALVTKLQAEGLSARTEPAGALTRVVVGPARSASDLAAIRDRLRQMGFDDALAVAL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP049811_1	1.31\|2550626\|32\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2550626-2550657	32	NZ_CP049811.1	948196-948227	0	1.0

1. spacer 1.31|2550626|32|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to position: 948196-948227, mismatch: 0, identity: 1.0

tttccgtttgaggcgcgttacgcctgcggtgg	CRISPR spacer
tttccgtttgaggcgcgttacgcctgcggtgg	Protospacer
********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP049811_1	1.7\|2549037\|34\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2549037-2549070	34	MN694219	Marine virus AFVG_250M758, complete genome	26476-26509	7	0.794
NZ_CP049811_1	1.8\|2549103\|34\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2549103-2549136	34	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	1510347-1510380	7	0.794
NZ_CP049811_1	1.8\|2549103\|34\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2549103-2549136	34	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	1799066-1799099	7	0.794
NZ_CP049811_1	1.24\|2550163\|34\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2550163-2550196	34	NZ_CP030127	Indioceanicola profundi strain SCSIO 08040 plasmid unnamed1, complete sequence	1098437-1098470	7	0.794
NZ_CP049811_1	1.36\|2550955\|34\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2550955-2550988	34	NZ_CP022542	Antarctobacter heliothermus strain SMS3 plasmid pSMS3-2, complete sequence	114572-114605	7	0.794
NZ_CP049811_1	1.37\|2551021\|32\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2551021-2551052	32	NC_048197	Erwinia phage vB_EhrS_49, complete genome	3381-3412	7	0.781
NZ_CP049811_1	1.37\|2551021\|32\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2551021-2551052	32	NC_048198	Erwinia phage vB_EhrS_59, complete genome	3381-3412	7	0.781
NZ_CP049811_1	1.46\|2551610\|33\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2551610-2551642	33	NZ_CP023071	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence	93929-93961	7	0.788
NZ_CP049811_1	1.46\|2551610\|33\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2551610-2551642	33	NZ_CP029232	Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence	101923-101955	7	0.788
NZ_CP049811_1	1.48\|2551741\|36\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2551741-2551776	36	NC_026611	Edwardsiella phage GF-2 DNA, complete sequence	25940-25975	7	0.806
NZ_CP049811_1	1.8\|2549103\|34\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2549103-2549136	34	NZ_CP050099	Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b5, complete sequence	158566-158599	8	0.765
NZ_CP049811_1	1.8\|2549103\|34\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2549103-2549136	34	NZ_CP025014	Rhizobium leguminosarum strain Norway plasmid pRLN2, complete sequence	208483-208516	8	0.765
NZ_CP049811_1	1.8\|2549103\|34\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2549103-2549136	34	NZ_CP053441	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eE, complete sequence	166653-166686	8	0.765
NZ_CP049811_1	1.8\|2549103\|34\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2549103-2549136	34	NZ_CP050093	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b5, complete sequence	178040-178073	8	0.765
NZ_CP049811_1	1.8\|2549103\|34\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2549103-2549136	34	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	830286-830319	8	0.765
NZ_CP049811_1	1.8\|2549103\|34\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2549103-2549136	34	NC_008384	Rhizobium leguminosarum bv. viciae 3841 plasmid pRL11, complete sequence	305617-305650	8	0.765
NZ_CP049811_1	1.8\|2549103\|34\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2549103-2549136	34	NZ_CP007794	Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence	1646470-1646503	8	0.765
NZ_CP049811_1	1.8\|2549103\|34\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2549103-2549136	34	NZ_CP054023	Rhizobium sp. JKLM12A2 plasmid pPR12A202, complete sequence	412468-412501	8	0.765
NZ_CP049811_1	1.8\|2549103\|34\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2549103-2549136	34	NZ_CP054033	Rhizobium sp. JKLM13E plasmid pPR13E02, complete sequence	102110-102143	8	0.765
NZ_CP049811_1	1.14\|2549502\|33\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2549502-2549534	33	MH617454	Microviridae sp. isolate ctig683, complete genome	404-436	8	0.758
NZ_CP049811_1	1.19\|2549833\|33\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2549833-2549865	33	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	1473541-1473573	8	0.758
NZ_CP049811_1	1.29\|2550494\|33\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2550494-2550526	33	NZ_AP014579	Burkholderia sp. RPE67 plasmid p1, complete sequence	1222265-1222297	8	0.758
NZ_CP049811_1	1.29\|2550494\|33\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2550494-2550526	33	NC_016626	Burkholderia sp. YI23 plasmid byi_1p, complete sequence	1075814-1075846	8	0.758
NZ_CP049811_1	1.37\|2551021\|32\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2551021-2551052	32	MG197996	Escherichia phage APC_JM3.2, complete genome	13218-13249	8	0.75
NZ_CP049811_1	1.37\|2551021\|32\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2551021-2551052	32	JF974339	Enterobacteria phage IME10, complete genome	21980-22011	8	0.75
NZ_CP049811_1	1.41\|2551282\|34\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2551282-2551315	34	NZ_CP054029	Rhizobium sp. JKLM19E plasmid pPR19E02, complete sequence	470787-470820	8	0.765
NZ_CP049811_1	1.46\|2551610\|33\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2551610-2551642	33	NC_012586	Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence	2348482-2348514	8	0.758
NZ_CP049811_1	1.47\|2551675\|34\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2551675-2551708	34	NZ_CP030786	Escherichia albertii strain 2012EL-1823B plasmid unnamed3, complete sequence	22377-22410	8	0.765
NZ_CP049811_1	1.48\|2551741\|36\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2551741-2551776	36	KM389229	UNVERIFIED: Pseudomonas phage F_TK1718sp/PAK clone contig00001 genomic sequence	15182-15217	8	0.778
NZ_CP049811_1	1.48\|2551741\|36\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2551741-2551776	36	HQ711985	Pseudomonas phage vB_PaeS_PMG1, complete genome	38427-38462	8	0.778
NZ_CP049811_1	1.48\|2551741\|36\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2551741-2551776	36	NC_023575	Pseudomonas phage vB_PaeP_Tr60_Ab31	33257-33292	8	0.778
NZ_CP049811_1	1.53\|2552072\|33\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2552072-2552104	33	CP006880	Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence	2228492-2228524	8	0.758
NZ_CP049811_1	1.17\|2549700\|33\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2549700-2549732	33	NZ_CP007130	Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence	397169-397201	9	0.727
NZ_CP049811_1	1.21\|2549964\|35\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2549964-2549998	35	NC_024971	Streptomyces rochei plasmid pSLA2-S DNA, complete sequence, strain: 7434AN4	8841-8875	9	0.743
NZ_CP049811_1	1.21\|2549964\|35\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2549964-2549998	35	MN234228	Mycobacterium phage Tourach, complete genome	48860-48894	9	0.743
NZ_CP049811_1	1.21\|2549964\|35\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2549964-2549998	35	NC_023732	Mycobacterium phage Rumpelstiltskin, complete genome	47914-47948	9	0.743
NZ_CP049811_1	1.21\|2549964\|35\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2549964-2549998	35	NC_022052	Mycobacterium phage Whirlwind, complete genome	48922-48956	9	0.743
NZ_CP049811_1	1.21\|2549964\|35\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2549964-2549998	35	MN703406	Mycobacterium phage Gabriela, complete genome	46935-46969	9	0.743
NZ_CP049811_1	1.21\|2549964\|35\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2549964-2549998	35	MF185728	Mycobacterium phage Finemlucis, complete genome	48809-48843	9	0.743
NZ_CP049811_1	1.25\|2550229\|35\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2550229-2550263	35	NC_013856	Azospirillum sp. B510 plasmid pAB510b, complete sequence	280741-280775	9	0.743
NZ_CP049811_1	1.36\|2550955\|34\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2550955-2550988	34	NC_017385	Ketogulonicigenium vulgare WSH-001 plasmid 2, complete sequence	193103-193136	9	0.735
NZ_CP049811_1	1.36\|2550955\|34\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2550955-2550988	34	NZ_CP012910	Ketogulonicigenium vulgare strain Hbe602 plasmid 2, complete sequence	51879-51912	9	0.735
NZ_CP049811_1	1.36\|2550955\|34\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2550955-2550988	34	NZ_CP029834	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed4, complete sequence	399194-399227	9	0.735
NZ_CP049811_1	1.36\|2550955\|34\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2550955-2550988	34	NC_016624	Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence	415687-415720	9	0.735
NZ_CP049811_1	1.36\|2550955\|34\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2550955-2550988	34	NC_014626	Ketogulonicigenium vulgare Y25 plasmid pYP12, complete sequence	1170-1203	9	0.735
NZ_CP049811_1	1.36\|2550955\|34\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2550955-2550988	34	NZ_CP032347	Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence	193336-193369	9	0.735
NZ_CP049811_1	1.41\|2551282\|34\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2551282-2551315	34	NZ_CP015881	Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence	189421-189454	9	0.735
NZ_CP049811_1	1.41\|2551282\|34\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2551282-2551315	34	NZ_CP030263	Ensifer adhaerens strain Corn53 plasmid AA, complete sequence	239510-239543	9	0.735
NZ_CP049811_1	1.48\|2551741\|36\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2551741-2551776	36	NZ_CP040893	Leclercia adecarboxylata strain Z96-1 plasmid pZ96-1_2, complete sequence	67527-67562	9	0.75
NZ_CP049811_1	1.6\|2548971\|34\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2548971-2549004	34	GQ141189	Bifidobacterium phage Bbif-1, complete sequence	4610-4643	10	0.706
NZ_CP049811_1	1.8\|2549103\|34\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2549103-2549136	34	NZ_CP018224	Tardibacter chloracetimidivorans strain JJ-A5 plasmid pHSL3, complete sequence	32018-32051	10	0.706
NZ_CP049811_1	1.8\|2549103\|34\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2549103-2549136	34	NZ_CP010956	Sphingobium sp. YBL2 plasmid 2pYBL2-2, complete sequence	19539-19572	10	0.706
NZ_CP049811_1	1.31\|2550626\|32\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2550626-2550657	32	NZ_CP028976	Cronobacter sakazakii strain GZcsf-1 plasmid pGW2, complete sequence	64850-64881	10	0.688
NZ_CP049811_1	1.31\|2550626\|32\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2550626-2550657	32	NZ_CP049260	Cronobacter sakazakii strain CS-931 plasmid pCsaCS931b, complete sequence	44023-44054	10	0.688
NZ_CP049811_1	1.36\|2550955\|34\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2550955-2550988	34	NZ_CP020385	Rhodovulum sp. MB263 plasmid pRSMBA, complete sequence	203848-203881	10	0.706
NZ_CP049811_1	1.40\|2551216\|34\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2551216-2551249	34	NZ_CP017563	Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence	157591-157624	10	0.706
NZ_CP049811_1	1.41\|2551282\|34\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2551282-2551315	34	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	1692304-1692337	10	0.706
NZ_CP049811_1	1.41\|2551282\|34\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2551282-2551315	34	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	68074-68107	10	0.706
NZ_CP049811_1	1.41\|2551282\|34\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2551282-2551315	34	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	1233185-1233218	10	0.706
NZ_CP049811_1	1.41\|2551282\|34\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2551282-2551315	34	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	1315449-1315482	10	0.706
NZ_CP049811_1	1.41\|2551282\|34\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2551282-2551315	34	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	242977-243010	10	0.706
NZ_CP049811_1	1.41\|2551282\|34\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2551282-2551315	34	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	1555132-1555165	10	0.706
NZ_CP049811_1	1.41\|2551282\|34\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2551282-2551315	34	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	981502-981535	10	0.706
NZ_CP049811_1	1.41\|2551282\|34\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2551282-2551315	34	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	277453-277486	10	0.706
NZ_CP049811_1	1.53\|2552072\|33\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2552072-2552104	33	NZ_CP006990	Rhizobium sp. IE4771 plasmid pRetIE4771d, complete sequence	268060-268092	10	0.697
NZ_CP049811_1	1.53\|2552072\|33\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2552072-2552104	33	NZ_CP021127	Rhizobium sp. Kim5 plasmid pRetKim5c, complete sequence	254821-254853	10	0.697
NZ_CP049811_1	1.53\|2552072\|33\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2552072-2552104	33	CP007644	Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803c, complete sequence	267126-267158	10	0.697
NZ_CP049811_1	1.36\|2550955\|34\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2550955-2550988	34	NZ_CP032323	Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence	923737-923770	11	0.676
NZ_CP049811_1	1.36\|2550955\|34\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2550955-2550988	34	NZ_CP032341	Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence	128613-128646	11	0.676
NZ_CP049811_1	1.36\|2550955\|34\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2550955-2550988	34	NZ_CP012916	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence	111427-111460	11	0.676
NZ_CP049811_1	1.47\|2551675\|34\|NZ_CP049811\|CRT,PILER-CR,CRISPRCasFinder	2551675-2551708	34	NC_012853	Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132503, complete sequence	178641-178674	11	0.676

1. spacer 1.7|2549037|34|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to MN694219 (Marine virus AFVG_250M758, complete genome) position: , mismatch: 7, identity: 0.794

gcgaccgaaccatccgtctctccaatatggctcc	CRISPR spacer
gaagcagtaccatccgtctctgcaatatcgctcc	Protospacer
* ..* * ************* ****** *****

2. spacer 1.8|2549103|34|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 7, identity: 0.794

ggctgt-ccctgatcacggtcggcgccgtgctgat	CRISPR spacer
-cctgcgccctgatcatgggcggcgccgtgctggc	Protospacer
  ***. *********.** *************..

3. spacer 1.8|2549103|34|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.794

ggctgt-ccctgatcacggtcggcgccgtgctgat	CRISPR spacer
-cctgcgccctgatcatgggcggcgccgtgctggc	Protospacer
  ***. *********.** *************..

4. spacer 1.24|2550163|34|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP030127 (Indioceanicola profundi strain SCSIO 08040 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.794

cgtcgatgttctgttgcgggtggagcgcgagctg	CRISPR spacer
cgaggaggcgctgttgctgctggagcgcgagctg	Protospacer
**  ** *. ******* * **************

5. spacer 1.36|2550955|34|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP022542 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-2, complete sequence) position: , mismatch: 7, identity: 0.794

gcgctcccctcgcccgcgcctgcgg--tcagcccaa	CRISPR spacer
ccgcggccctcgcccgcgcctgcggcatcgaccc--	Protospacer
 ***  *******************  **..***

6. spacer 1.37|2551021|32|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NC_048197 (Erwinia phage vB_EhrS_49, complete genome) position: , mismatch: 7, identity: 0.781

atgtcgtcgtcacctgtcagcggggcgctgta	CRISPR spacer
ctgtcgtcgtcatctgtcagcgggtccttatc	Protospacer
 ***********.*********** * .*.*

7. spacer 1.37|2551021|32|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NC_048198 (Erwinia phage vB_EhrS_59, complete genome) position: , mismatch: 7, identity: 0.781

atgtcgtcgtcacctgtcagcggggcgctgta	CRISPR spacer
ctgtcgtcgtcatctgtcagcgggtccttatc	Protospacer
 ***********.*********** * .*.*

8. spacer 1.46|2551610|33|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 7, identity: 0.788

ctgccggaggtggcgaatagcctggtcgcgtat	CRISPR spacer
ttccaggaggtggcgaatgccctggtcgcccat	Protospacer
.* * *************. ********* .**

9. spacer 1.46|2551610|33|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP029232 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence) position: , mismatch: 7, identity: 0.788

ctgccggaggtggcgaatagcctggtcgcgtat	CRISPR spacer
ttccaggaggtggcgaatgccctggtcgccaat	Protospacer
.* * *************. *********  **

10. spacer 1.48|2551741|36|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NC_026611 (Edwardsiella phage GF-2 DNA, complete sequence) position: , mismatch: 7, identity: 0.806

gtcaggcgggatgcccagcggggcatgtggataggg	CRISPR spacer
gtgatacgtgatgcccagcgaggcatgtggatagat	Protospacer
** * .** ***********.*************.

11. spacer 1.8|2549103|34|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP050099 (Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b5, complete sequence) position: , mismatch: 8, identity: 0.765

ggctgtccctgatcacggtcggcgccg--tgctgat	CRISPR spacer
ccttgtcgctgatcatggtcggcgccggcagctg--	Protospacer
  .**** *******.***********   ****

12. spacer 1.8|2549103|34|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP025014 (Rhizobium leguminosarum strain Norway plasmid pRLN2, complete sequence) position: , mismatch: 8, identity: 0.765

ggctgtccctgatcacggtcggcgccg--tgctgat	CRISPR spacer
ccttgtcgctgatcatggtcggcgccggcagctg--	Protospacer
  .**** *******.***********   ****

13. spacer 1.8|2549103|34|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP053441 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eE, complete sequence) position: , mismatch: 8, identity: 0.765

ggctgtccctgatcacggtcggcgccg--tgctgat	CRISPR spacer
ccttgtcgctgatcatggtcggcgccggcagctg--	Protospacer
  .**** *******.***********   ****

14. spacer 1.8|2549103|34|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP050093 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b5, complete sequence) position: , mismatch: 8, identity: 0.765

ggctgtccctgatcacggtcggcgccg--tgctgat	CRISPR spacer
ccttgtcgctgatcatggtcggcgccggcagctg--	Protospacer
  .**** *******.***********   ****

15. spacer 1.8|2549103|34|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.765

ggctgt-ccctgatcacggtcggcgccgtgctgat	CRISPR spacer
-cctgcgcgctgatcatgggcggcgccgtgctggc	Protospacer
  ***. * *******.** *************..

16. spacer 1.8|2549103|34|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NC_008384 (Rhizobium leguminosarum bv. viciae 3841 plasmid pRL11, complete sequence) position: , mismatch: 8, identity: 0.765

ggctgtccctgatcacggtcggcgccg--tgctgat	CRISPR spacer
ccttgtcgctgatcatggtcggcgccggcagctg--	Protospacer
  .**** *******.***********   ****

17. spacer 1.8|2549103|34|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 8, identity: 0.765

ggctgt-ccctgatcacggtcggcgccgtgctgat	CRISPR spacer
-cctgcgcgctgatcatgggcggcgccgtgctggc	Protospacer
  ***. * *******.** *************..

18. spacer 1.8|2549103|34|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP054023 (Rhizobium sp. JKLM12A2 plasmid pPR12A202, complete sequence) position: , mismatch: 8, identity: 0.765

ggctgtccctgatcacggtcggcgccg--tgctgat	CRISPR spacer
ccttgtcgctgatcatggtcggcgccggcagctg--	Protospacer
  .**** *******.***********   ****

19. spacer 1.8|2549103|34|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP054033 (Rhizobium sp. JKLM13E plasmid pPR13E02, complete sequence) position: , mismatch: 8, identity: 0.765

ggctgtccctgatcacggtcggcgccg--tgctgat	CRISPR spacer
ccttgtcgctgatcatggtcggcgccggcagctg--	Protospacer
  .**** *******.***********   ****

20. spacer 1.14|2549502|33|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to MH617454 (Microviridae sp. isolate ctig683, complete genome) position: , mismatch: 8, identity: 0.758

cggtgcgcccagtcactggcgggctttttattc	CRISPR spacer
cggtgggccaagtcactggcgggcttaccgtgt	Protospacer
***** *** **************** ...* .

21. spacer 1.19|2549833|33|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.758

cgccggtatgctggagagactgcttgaaggcgt-	CRISPR spacer
cgccgggatgctggagaaactgc-tgaacatacg	Protospacer
****** **********.***** **** ....

22. spacer 1.29|2550494|33|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.758

acctgacat-ccgctcgatccctccatgccgcaa	CRISPR spacer
-tatgccgcgccgctcgatccgtcgatgccgcaa	Protospacer
 . ** *.. *********** ** *********

23. spacer 1.29|2550494|33|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 8, identity: 0.758

acctgacat-ccgctcgatccctccatgccgcaa	CRISPR spacer
-tatgccgcgccgctcgatccgtcgatgccgcaa	Protospacer
 . ** *.. *********** ** *********

24. spacer 1.37|2551021|32|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to MG197996 (Escherichia phage APC_JM3.2, complete genome) position: , mismatch: 8, identity: 0.75

atgtcgtcgtcacctgtcagcggggcgctgta	CRISPR spacer
ctgaccggctcacctgtcagcgggtcgcggta	Protospacer
 ** *    *************** *** ***

25. spacer 1.37|2551021|32|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to JF974339 (Enterobacteria phage IME10, complete genome) position: , mismatch: 8, identity: 0.75

atgtcgtcgtcacctgtcagcggggcgctgta	CRISPR spacer
ctgaccggctcacctgtcagcgggtcgcggta	Protospacer
 ** *    *************** *** ***

26. spacer 1.41|2551282|34|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP054029 (Rhizobium sp. JKLM19E plasmid pPR19E02, complete sequence) position: , mismatch: 8, identity: 0.765

atcgaccgcatggccgatggcacgccgcttacca	CRISPR spacer
ttcaaggcgatggccgatggcacgccgctgaccg	Protospacer
 **.*    ******************** ***.

27. spacer 1.46|2551610|33|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 8, identity: 0.758

ctgccggaggtggcgaatagcctggtcgcgtat	CRISPR spacer
ttccaggaggtggcgaatgccctggtcgccaac	Protospacer
.* * *************. *********  *.

28. spacer 1.47|2551675|34|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP030786 (Escherichia albertii strain 2012EL-1823B plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.765

ctggc--tctcgcgttcagatcggcgatatgggcct	CRISPR spacer
--ggcagagccgcgttcagatcgtcgagatgggcat	Protospacer
  ***    .************* *** ****** *

29. spacer 1.48|2551741|36|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to KM389229 (UNVERIFIED: Pseudomonas phage F_TK1718sp/PAK clone contig00001 genomic sequence) position: , mismatch: 8, identity: 0.778

gtcaggcgggatgcccagcggggcatgtggataggg	CRISPR spacer
aggatgcgggaggcccagcggggcatgtggatactt	Protospacer
.  * ****** *********************

30. spacer 1.48|2551741|36|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to HQ711985 (Pseudomonas phage vB_PaeS_PMG1, complete genome) position: , mismatch: 8, identity: 0.778

gtcaggcgggatgcccagcggggcatgtggataggg	CRISPR spacer
aggatgcgggaggcccagcggggcatgtggatactt	Protospacer
.  * ****** *********************

31. spacer 1.48|2551741|36|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NC_023575 (Pseudomonas phage vB_PaeP_Tr60_Ab31) position: , mismatch: 8, identity: 0.778

gtcaggcgggatgcccagcggggcatgtggataggg	CRISPR spacer
aggatgcgggaggcccagcggggcatgtggatactt	Protospacer
.  * ****** *********************

32. spacer 1.53|2552072|33|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to CP006880 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence) position: , mismatch: 8, identity: 0.758

gagcggtatgacgacaacatccgcaacgcctat	CRISPR spacer
ctgatctatgtcgacaacatccgcaacgccttc	Protospacer
  *   **** ******************** .

33. spacer 1.17|2549700|33|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 9, identity: 0.727

ggcaggcgcgcgcaggatcgggcgctgcgtgtc	CRISPR spacer
cgtctgcgcgcgcacgatcgggagctgcggcgc	Protospacer
 *.  ********* ******* ******   *

34. spacer 1.21|2549964|35|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NC_024971 (Streptomyces rochei plasmid pSLA2-S DNA, complete sequence, strain: 7434AN4) position: , mismatch: 9, identity: 0.743

acctgaccaattgcaggtagtccactacgatcatg	CRISPR spacer
cctccaccagttgcaggtagtccacgacgaggagg	Protospacer
 *.. ****.*************** ****  * *

35. spacer 1.21|2549964|35|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to MN234228 (Mycobacterium phage Tourach, complete genome) position: , mismatch: 9, identity: 0.743

acctgaccaattgcaggtagtccactacgatcatg	CRISPR spacer
gcttaaccaattgcaggtaatccacgacgacaaca	Protospacer
.*.*.**************.***** ****. *..

36. spacer 1.21|2549964|35|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NC_023732 (Mycobacterium phage Rumpelstiltskin, complete genome) position: , mismatch: 9, identity: 0.743

acctgaccaattgcaggtagtccactacgatcatg	CRISPR spacer
gcttaaccaattgcagatagtccacgacgactaca	Protospacer
.*.*.***********.******** ****..*..

37. spacer 1.21|2549964|35|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NC_022052 (Mycobacterium phage Whirlwind, complete genome) position: , mismatch: 9, identity: 0.743

acctgaccaattgcaggtagtccactacgatcatg	CRISPR spacer
gattgatcaattgcaggtagtccacgacaactgtg	Protospacer
. .***.****************** **.*...**

38. spacer 1.21|2549964|35|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to MN703406 (Mycobacterium phage Gabriela, complete genome) position: , mismatch: 9, identity: 0.743

acctgaccaattgcaggtagtccactacgatcatg	CRISPR spacer
gcttaaccaattgcagatagtccacgacgactaca	Protospacer
.*.*.***********.******** ****..*..

39. spacer 1.21|2549964|35|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to MF185728 (Mycobacterium phage Finemlucis, complete genome) position: , mismatch: 9, identity: 0.743

acctgaccaattgcaggtagtccactacgatcatg	CRISPR spacer
gcttaaccaattgcagatagtccacgacgactaca	Protospacer
.*.*.***********.******** ****..*..

40. spacer 1.25|2550229|35|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NC_013856 (Azospirillum sp. B510 plasmid pAB510b, complete sequence) position: , mismatch: 9, identity: 0.743

gcggcggcaccgattgcgccctgatcgccgcgacg	CRISPR spacer
cggccggcaccgtctgcgccctgatcgccggcctg	Protospacer
  * ******** .****************   .*

41. spacer 1.36|2550955|34|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NC_017385 (Ketogulonicigenium vulgare WSH-001 plasmid 2, complete sequence) position: , mismatch: 9, identity: 0.735

gcgctcccctcgcccgcgcctgcggtca--gcccaa	CRISPR spacer
atcgtctcctcgcccgcgcctgcggccacggcct--	Protospacer
..  **.******************.**  ***.

42. spacer 1.36|2550955|34|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP012910 (Ketogulonicigenium vulgare strain Hbe602 plasmid 2, complete sequence) position: , mismatch: 9, identity: 0.735

gcgctcccctcgcccgcgcctgcggtca--gcccaa	CRISPR spacer
atcgtctcctcgcccgcgcctgcggccacggcct--	Protospacer
..  **.******************.**  ***.

43. spacer 1.36|2550955|34|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP029834 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.735

gcgctcccctcgcccgcgcctgcggtcagcccaa--	CRISPR spacer
acgcccgcctcgcccgcgcctgcggc--gtcgagcg	Protospacer
.***.* ******************.  *.* *.

44. spacer 1.36|2550955|34|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NC_016624 (Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence) position: , mismatch: 9, identity: 0.735

gcgctcccctcgcccgcgcctgcggtcagcccaa--	CRISPR spacer
acgcccgcctcgcccgcgcctgcggc--gtcgagcg	Protospacer
.***.* ******************.  *.* *.

45. spacer 1.36|2550955|34|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NC_014626 (Ketogulonicigenium vulgare Y25 plasmid pYP12, complete sequence) position: , mismatch: 9, identity: 0.735

gcgctcccctcgcccgcgcctgcggtca--gcccaa	CRISPR spacer
atcgtctcctcgcccgcgcctgcggccacggcct--	Protospacer
..  **.******************.**  ***.

46. spacer 1.36|2550955|34|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 9, identity: 0.735

gcgctcccctcgcccgcgcctgcggtcagcccaa--	CRISPR spacer
acgcccgcctcgcccgcgcctgcgg--ggtggaacg	Protospacer
.***.* ******************  .*.  **

47. spacer 1.41|2551282|34|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 9, identity: 0.735

atcgaccgcatggccgatggcacgccgcttacca	CRISPR spacer
ctcgatcgcatggccgatgtcacgccgggacgcc	Protospacer
 ****.************* *******     *

48. spacer 1.41|2551282|34|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP030263 (Ensifer adhaerens strain Corn53 plasmid AA, complete sequence) position: , mismatch: 9, identity: 0.735

atcgaccgcatggccgatggcacgccgcttacca	CRISPR spacer
ctcgatcgcatggccgatgtcacgccgggacgcc	Protospacer
 ****.************* *******     *

49. spacer 1.48|2551741|36|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP040893 (Leclercia adecarboxylata strain Z96-1 plasmid pZ96-1_2, complete sequence) position: , mismatch: 9, identity: 0.75

gtcaggcgggatgcccagcggggcatgtggataggg	CRISPR spacer
agaattcggcatgcccagcgcggcatgtggatagat	Protospacer
.  *  *** ********** *************.

50. spacer 1.6|2548971|34|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to GQ141189 (Bifidobacterium phage Bbif-1, complete sequence) position: , mismatch: 10, identity: 0.706

gtgggcgatagcgtggcgcaggcgatgcttgtca	CRISPR spacer
gtgggcgatggcgtcgcgcaggcgtcggcgtgcg	Protospacer
*********.**** ********* .* .   *.

51. spacer 1.8|2549103|34|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP018224 (Tardibacter chloracetimidivorans strain JJ-A5 plasmid pHSL3, complete sequence) position: , mismatch: 10, identity: 0.706

ggctgtccctgatcacggtcggcgccgtgctgat	CRISPR spacer
attattccctgctcagggtcggcgccgtgctcga	Protospacer
. .  ****** *** *************** .

52. spacer 1.8|2549103|34|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP010956 (Sphingobium sp. YBL2 plasmid 2pYBL2-2, complete sequence) position: , mismatch: 10, identity: 0.706

ggctgtccctgatcacggtcggcgccgtgctgat	CRISPR spacer
attattccctgctcagggtcggcgccgtgctcga	Protospacer
. .  ****** *** *************** .

53. spacer 1.31|2550626|32|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP028976 (Cronobacter sakazakii strain GZcsf-1 plasmid pGW2, complete sequence) position: , mismatch: 10, identity: 0.688

tttccgtttgaggcgcgttacgcctgcggtgg	CRISPR spacer
gaatgtattgaggcgtgttacgcctgcgctga	Protospacer
   .   ********.************ **.

54. spacer 1.31|2550626|32|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP049260 (Cronobacter sakazakii strain CS-931 plasmid pCsaCS931b, complete sequence) position: , mismatch: 10, identity: 0.688

tttccgtttgaggcgcgttacgcctgcggtgg	CRISPR spacer
caatatattgaggcgtgttacgcctgcgctga	Protospacer
.  .   ********.************ **.

55. spacer 1.36|2550955|34|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP020385 (Rhodovulum sp. MB263 plasmid pRSMBA, complete sequence) position: , mismatch: 10, identity: 0.706

gcgctccc-----ctcgcccgcgcctgcggtcagcccaa	CRISPR spacer
-----cacaggagctggcccgcgcctgcggccagcccgc	Protospacer
     * *     ** **************.******.

56. spacer 1.40|2551216|34|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP017563 (Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence) position: , mismatch: 10, identity: 0.706

gtggcgtgctgcgcggtgcgagaggtgcgggggt	CRISPR spacer
tgttcgtgctgcgcgatgcgagcggtgcgttgcg	Protospacer
    ***********.****** ******  *

57. spacer 1.41|2551282|34|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 10, identity: 0.706

atcgaccgcatggccgatggcacgccgcttacca	CRISPR spacer
atcgaccacatggcctatggcacggaaggcatct	Protospacer
*******.******* ********  .  .*.*

58. spacer 1.41|2551282|34|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 10, identity: 0.706

atcgaccgcatggccgatggcacgccgcttacca	CRISPR spacer
atcgaccacatggcctatggcacggaaggcatct	Protospacer
*******.******* ********  .  .*.*

59. spacer 1.41|2551282|34|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 10, identity: 0.706

atcgaccgcatggccgatggcacgccgcttacca	CRISPR spacer
atcgaccacatggcctatggcacggaaggcatct	Protospacer
*******.******* ********  .  .*.*

60. spacer 1.41|2551282|34|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 10, identity: 0.706

atcgaccgcatggccgatggcacgccgcttacca	CRISPR spacer
atcgaccacatggcctatggcacggaaggcatct	Protospacer
*******.******* ********  .  .*.*

61. spacer 1.41|2551282|34|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 10, identity: 0.706

atcgaccgcatggccgatggcacgccgcttacca	CRISPR spacer
atcgaccacatggcctatggcacggaaggcatct	Protospacer
*******.******* ********  .  .*.*

62. spacer 1.41|2551282|34|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 10, identity: 0.706

atcgaccgcatggccgatggcacgccgcttacca	CRISPR spacer
atcgaccacatggcctatggcacggaaggcatct	Protospacer
*******.******* ********  .  .*.*

63. spacer 1.41|2551282|34|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 10, identity: 0.706

atcgaccgcatggccgatggcacgccgcttacca	CRISPR spacer
atcgaccacatggcctatggcacggaaggcatct	Protospacer
*******.******* ********  .  .*.*

64. spacer 1.41|2551282|34|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 10, identity: 0.706

atcgaccgcatggccgatggcacgccgcttacca	CRISPR spacer
atcgaccacatggcctatggcacggaaggcatct	Protospacer
*******.******* ********  .  .*.*

65. spacer 1.53|2552072|33|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP006990 (Rhizobium sp. IE4771 plasmid pRetIE4771d, complete sequence) position: , mismatch: 10, identity: 0.697

gagcggtatgacgacaacatccgcaacgcctat	CRISPR spacer
atcatttatgtcgacaacatccgcgacgccttc	Protospacer
.     **** *************.****** .

66. spacer 1.53|2552072|33|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP021127 (Rhizobium sp. Kim5 plasmid pRetKim5c, complete sequence) position: , mismatch: 10, identity: 0.697

gagcggtatgacgacaacatccgcaacgcctat	CRISPR spacer
atcatttatgtcgacaacatccgcgacgccttc	Protospacer
.     **** *************.****** .

67. spacer 1.53|2552072|33|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to CP007644 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803c, complete sequence) position: , mismatch: 10, identity: 0.697

gagcggtatgacgacaacatccgcaacgcctat	CRISPR spacer
atcatttatgtcgacaacatccgcgacgccttc	Protospacer
.     **** *************.****** .

68. spacer 1.36|2550955|34|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP032323 (Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence) position: , mismatch: 11, identity: 0.676

gcgctcccctcgcccgcgcctgcggtcagcccaa	CRISPR spacer
acgcccgcctcgcccgcgcctgcggcgtggaacg	Protospacer
.***.* ******************.  *    .

69. spacer 1.36|2550955|34|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP032341 (Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence) position: , mismatch: 11, identity: 0.676

gcgctcccctcgcccgcgcctgcggtcagcccaa	CRISPR spacer
acgcccgcctcgcccgcgcctgcggcgtggaacg	Protospacer
.***.* ******************.  *    .

70. spacer 1.36|2550955|34|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP012916 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence) position: , mismatch: 11, identity: 0.676

gcgctcccctcgcccgcgcctgcggtcagcccaa	CRISPR spacer
acgcccgcctcgcccgcgcctgcggcgtggaacg	Protospacer
.***.* ******************.  *    .

71. spacer 1.47|2551675|34|NZ_CP049811|CRT,PILER-CR,CRISPRCasFinder matches to NC_012853 (Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132503, complete sequence) position: , mismatch: 11, identity: 0.676

ctggctctcgcgttcagatcggcgatatgggcct	CRISPR spacer
aaggctgccgcgttcagatcggcgatgacgaaag	Protospacer
  **** .******************.  *.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

706296 : 712381

Pseudoalteromonas_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_166188678.1\|706296_706743_+	hypothetical protein	A0A1L5C299	Pseudoalteromonas_phage	7.2e-09	40.4
WP_166188680.1\|706798_706945_+	aa3-type cytochrome c oxidase subunit IV	NA	NA	NA	NA
WP_166193813.1\|706960_707713_-	serine/threonine protein phosphatase	A0A1V0EF12	Caulobacter_phage	9.9e-27	34.9
WP_166188682.1\|707833_708040_-	30S ribosomal protein S21	M1HLV7	Pelagibacter_phage	1.0e-05	52.4
WP_166188684.1\|708166_708853_+	COQ9 family protein	NA	NA	NA	NA
WP_166188687.1\|708842_710102_-	class I SAM-dependent methyltransferase	A0A2I2L5L3	Orpheovirus	2.6e-48	40.9
WP_166188689.1\|710165_711698_-	cryptochrome/photolyase family protein	E3T4R9	Cafeteria_roenbergensis_virus	1.7e-49	25.5
WP_166193816.1\|711694_712381_-	SDR family NAD(P)-dependent oxidoreductase	Q56AQ6	Bacillus_thuringiensis_phage	3.3e-29	37.8

DBSCAN-SWA_2

1917797 : 1929530

uncultured_Mediterranean_phage(62.5%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_166191021.1\|1917797_1918853_-	dihydropteroate synthase	A0A0B5J4J5	Pandoravirus	4.8e-27	34.0
WP_166191023.1\|1918849_1919524_-	HAD-IA family hydrolase	NA	NA	NA	NA
WP_166191025.1\|1919520_1920078_-	thioredoxin family protein	NA	NA	NA	NA
WP_166191027.1\|1920292_1920550_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	9.6e-06	49.2
WP_166191029.1\|1920576_1921116_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_166191031.1\|1921119_1921962_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	1.5e-36	36.3
WP_166191033.1\|1921958_1922789_+	ATP-binding protein	NA	NA	NA	NA
WP_166191035.1\|1922869_1924084_-	peptidoglycan DD-metalloendopeptidase family protein	A0A1W6JQH9	Corynebacterium_phage	3.1e-06	33.9
WP_166194068.1\|1924135_1924759_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	4.5e-33	51.2
WP_166191037.1\|1924803_1925592_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.8e-31	35.4
WP_166191039.1\|1925649_1926348_-	hypothetical protein	NA	NA	NA	NA
WP_166191041.1\|1926405_1926876_-	DUF1203 domain-containing protein	NA	NA	NA	NA
WP_166191043.1\|1926940_1928230_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	4.3e-86	43.0
WP_166191045.1\|1928449_1929530_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	8.1e-46	38.6

DBSCAN-SWA_3

2318156 : 2329455

Paracoccus_phage(37.5%)

capsid,protease,tail,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_166191914.1\|2318156_2318873_-	DUF2793 domain-containing protein	A0A0K1LM54	Rhodobacter_phage	9.2e-22	43.8
WP_166191916.1\|2318865_2322705_-	host specificity protein	A0A0K1Y6G6	Rhodobacter_phage	8.4e-231	40.4
WP_166191919.1\|2322705_2323161_-	peptidase	F4YXU4	Roseobacter_phage	2.4e-28	44.4
WP_166191922.1\|2323135_2324029_-	DUF2163 domain-containing protein	A0A0B5A5B8	Paracoccus_phage	4.9e-65	45.1
WP_166191925.1\|2324028_2324655_-	DUF2460 domain-containing protein	A0A0B5A2K3	Paracoccus_phage	4.5e-57	50.2
WP_166191928.1\|2324729_2325383_-\|tail	phage tail tape measure protein	G9JXH3	Shigella_phage	1.4e-08	31.0
WP_166191931.1\|2325379_2325571_-\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_166191934.1\|2325567_2325909_-	gene transfer agent family protein	NA	NA	NA	NA
WP_166191939.1\|2325905_2326319_-\|tail	phage major tail protein, TP901-1 family	NA	NA	NA	NA
WP_166191942.1\|2326355_2326748_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_166194163.1\|2326744_2327053_-\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_166191945.1\|2327082_2327634_-	hypothetical protein	NA	NA	NA	NA
WP_166191948.1\|2327714_2328881_-\|capsid	phage major capsid protein	B0VK33	Azospirillum_phage	3.3e-61	40.7
WP_166194166.1\|2328921_2329455_-\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	8.6e-33	51.2

DBSCAN-SWA_4

2360214 : 2371626

uncultured_Mediterranean_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_166192043.1\|2360214_2360748_-	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	1.1e-35	51.9
WP_166192046.1\|2360744_2361254_-	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	6.0e-44	58.1
WP_166192049.1\|2361356_2361848_-	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	5.5e-34	44.7
WP_166192052.1\|2362032_2362650_+	isoprenylcysteine carboxylmethyltransferase family protein	NA	NA	NA	NA
WP_166194181.1\|2362684_2363122_-	CBS domain-containing protein	NA	NA	NA	NA
WP_166192055.1\|2363246_2363570_+	hypothetical protein	NA	NA	NA	NA
WP_166192058.1\|2363604_2366466_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	0.0e+00	59.8
WP_166192061.1\|2366687_2367191_+	single-stranded DNA-binding protein	A0A0U2C0X4	Paracoccus_phage	5.2e-48	78.5
WP_166192064.1\|2367504_2368686_+	AI-2E family transporter	NA	NA	NA	NA
WP_166192067.1\|2368839_2371626_+	DNA gyrase subunit A	A0A172JHV7	Bacillus_phage	8.1e-82	30.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP049815

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP049816

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP049814

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NZ_CP049811

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection