CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP049837	Gordonia terrae strain RL-JC02 plasmid pPAE01, complete sequence	0 crisprs	csf3gr5,csf2gr7,csf4gr11,csf1gr8	0	0	0	0
NZ_CP049836	Gordonia terrae strain RL-JC02 chromosome, complete genome	8 crisprs	WYL,cas3,csa3,DEDDh,RT,cas4,DinG	2	5	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP049836_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049836_1

806050-806126

Orphan

Consensus_repeat	Method
GTCGAGGCGCCGTGTCGAAGCCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP049836_1

>merge|NZ_CP049836|1|806050-806126|CRISPRCasFinder
GTCGAGGCGCCGTGTCGAAGCCACCCCCCGCTGGTTGAGCCGGCCCCGAGCGGAGCGAGGCGCCGTGTCGAAGCCAC

>NZ_CP049836|1|1|806050-806126|CRISPRCasFinder
GTCGAGGCGCCGTGTCGAAGCCAC	CCCCCGCTGGTTGAGCCGGCCCCGAGCGG
AGCGAGGCGCCGTGTCGAAGCCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049836.1\|WP_165629451.1\|816309_817290_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049836.1\|WP_119699221.1\|813384_814896_+\|IS21-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP049836.1\|WP_062394395.1\|814892_815681_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224401
NZ_CP049836.1\|WP_165630774.1\|799426_803725_-\|DUF3367-domain-containing-protein	unknown	unknown	gnl\|CDD\|378735
NZ_CP049836.1\|WP_004023745.1\|803846_804047_-\|DUF2613-domain-containing-protein	unknown	unknown	gnl\|CDD\|378543
NZ_CP049836.1\|WP_165629448.1\|809004_810528_+\|SAM-dependent-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|223363
NZ_CP049836.1\|WP_165629445.1\|804122_804845_-\|DJ-1/PfpI-family-protein	unknown	unknown	gnl\|CDD\|153233
NZ_CP049836.1\|WP_165629441.1\|792484_794215_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049836.1\|WP_165630773.1\|794228_795167_-\|CoA-ester-lyase	unknown	unknown	gnl\|CDD\|225184
NZ_CP049836.1\|WP_058252311.1\|808195_808798_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP049836.1\|WP_058252224.1\|806274_806832_-\|universal-stress-protein	unknown	unknown	gnl\|CDD\|238182
NZ_CP049836.1\|WP_165629452.1\|817510_820957_+\|DEAD/DEAH-box-helicase-family-protein	unknown	unknown	gnl\|CDD\|226581
NZ_CP049836.1\|WP_165629449.1\|810524_811628_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|341156
NZ_CP049836.1\|WP_165629450.1\|815887_816268_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049836.1\|WP_078113253.1\|791367_792528_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NZ_CP049836.1\|WP_165629447.1\|806930_808097_+\|glycoside-hydrolase-family-3-protein	unknown	unknown	gnl\|CDD\|224389
NZ_CP049836.1\|WP_165629446.1\|804881_805847_-\|GlxA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|227311
NZ_CP049836.1\|WP_165629444.1\|797046_798231_-\|DUF3068-domain-containing-protein	unknown	unknown	gnl\|CDD\|371444
NZ_CP049836.1\|WP_165629443.1\|796563_797034_+\|polyketide-cyclase	unknown	unknown	gnl\|CDD\|176867
NZ_CP049836.1\|WP_165629442.1\|795329_796514_+\|polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|240532

Protein	Function_ID	Function_description	E-value
NZ_CP049836.1\|WP_119699221.1\|813384_814896_+\|IS21-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	8.83795e-11
NZ_CP049836.1\|WP_062394395.1\|814892_815681_+\|ATP-binding-protein	gnl\|CDD\|224401	COG1484, DnaC, DNA replication protein [DNA replication, recombination, and repair].	2.78454e-56
NZ_CP049836.1\|WP_165630774.1\|799426_803725_-\|DUF3367-domain-containing-protein	gnl\|CDD\|378735	pfam11847, DUF3367, Domain of unknown function (DUF3367). This domain is functionally uncharacterized. This domain is found in bacteria and archaea. This presumed domain is typically between 667 to 694 amino acids in length.	0
NZ_CP049836.1\|WP_004023745.1\|803846_804047_-\|DUF2613-domain-containing-protein	gnl\|CDD\|378543	pfam11021, DUF2613, Protein of unknown function (DUF2613). This is a family of putative small secreted proteins expressed by Actinobacteria. The function is not known.	8.34039e-05
NZ_CP049836.1\|WP_165629448.1\|809004_810528_+\|SAM-dependent-DNA-methyltransferase	gnl\|CDD\|223363	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms].	2.90242e-67
NZ_CP049836.1\|WP_165629445.1\|804122_804845_-\|DJ-1/PfpI-family-protein	gnl\|CDD\|153233	cd03139, GATase1_PfpI_2, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.	5.6493e-75
NZ_CP049836.1\|WP_165630773.1\|794228_795167_-\|CoA-ester-lyase	gnl\|CDD\|225184	COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport and metabolism].	6.65741e-64
NZ_CP049836.1\|WP_058252311.1\|808195_808798_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	2.26213e-17
NZ_CP049836.1\|WP_058252224.1\|806274_806832_-\|universal-stress-protein	gnl\|CDD\|238182	cd00293, USP_Like, Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.	2.11923e-19
NZ_CP049836.1\|WP_165629452.1\|817510_820957_+\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|226581	COG4096, HsdR, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].	0
NZ_CP049836.1\|WP_165629449.1\|810524_811628_+\|hypothetical-protein	gnl\|CDD\|341156	cd17267, RMtype1_S_EcoAO83I-TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to S.EcoAO83I TRD1-CR1 and S.AbaB8342I TRD2-CR2. Escherichia coli strain A0 34/86 S subunit (S.EcoAO83I) recognizes 5'... GGANNNNNNNNATGC ... 3, and Acinetobacter baumannii B8342 S subunit (S.AbaB8342I) recognizes 5'... TTCANNNNNNTCC ... 3. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. For example S.AbaB8342I-TRD1 recognizes TTCA/TGAA and S.AbaB8342I-TRD2 recognizes GGA/TCC. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It also includes TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases such as Type IIG restriction enzyme/N6-adenine DNA methyltransferases from Thermus scotoductus RFL1 (RM.TstI) and Acinetobacter lwoffi Ks 4-8 (RM.AloI), as well as type I DNA methyltransferases such as Sideroxydans lithotrophicus ES-1 Type I N6-adenine DNA methyltransferase (M.SliESORF1090P). RM.TstI recognizes 5' ... CACNNNNNNTCC ... 3' and RM.AloI recognizes 5' ... GAACNNNNNNTCC ... 3'.	5.74246e-72
NZ_CP049836.1\|WP_078113253.1\|791367_792528_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	2.04599e-56
NZ_CP049836.1\|WP_165629447.1\|806930_808097_+\|glycoside-hydrolase-family-3-protein	gnl\|CDD\|224389	COG1472, BglX, Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism].	1.5256e-71
NZ_CP049836.1\|WP_165629446.1\|804881_805847_-\|GlxA-family-transcriptional-regulator	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	1.00482e-94
NZ_CP049836.1\|WP_165629444.1\|797046_798231_-\|DUF3068-domain-containing-protein	gnl\|CDD\|371444	pfam11271, DUF3068, Protein of unknown function (DUF3068). Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.	5.26408e-71
NZ_CP049836.1\|WP_165629443.1\|796563_797034_+\|polyketide-cyclase	gnl\|CDD\|176867	cd07825, SRPBCC_7, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.	2.34144e-59
NZ_CP049836.1\|WP_165629442.1\|795329_796514_+\|polysaccharide-biosynthesis-protein	gnl\|CDD\|240532	cd13127, MATE_tuaB_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins. This family might function as a translocase for lipopolysaccharides and participate in the biosynthesis of cell wall components such as teichuronic acid. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.	3.63068e-08

>NZ_CP049836.1|WP_165629446.1|804881_805847_-|GlxA-family-transcriptional-regulator
MTRSVLILGYPGVQALDVTGPADVFTTASYALADQGAQVRYDLRLVSTTGLPVGTGVGLEFVAQPLPDPAEPLDILILPGGTGVHDASRDPDLVDWIRRAAQRARRVVSVCNGAFLAAEAGLLDGKRATTHWAVTELLAERYPSIQVDAEALFVRGSDRVWSSAGVTAGIDLSLALIEEDHGTELAQLVARWLVLYMRRPGGQSQFAPPVWMPRARRTAIREIQERIEAEPGRVHRVDDLARDASMSPRHFSRIFTDETGEAPGAYVERVRTDAARRALTQSDDTMPVIATRCGFGSAETMRRTFVRRLGVPPDQYRRTFR
>NZ_CP049836.1|WP_165629445.1|804122_804845_-|DJ-1/PfpI-family-protein
MTQIAIVLYPQFTALDFIGPYEVLRALPDTDVRFVWHEPGPVVADSGVLVVGATHSFDETPPPDVVLVPGGPGFLAASQDEKVLDWLRAVRPGAQWTTSVCTGSIILAAAGLLDGKPATTHWSSMAGLTLHGAKAVSDQRIVRAAPDDDLVTAAGVSAGIDLALWLAEQIAGRARAEAIQLIIEYDPQPHLDSGHRSKASAKTIATSTMLLSRDVDKPEMVKSSVRLLWDRALTKVRSGR
>NZ_CP049836.1|WP_004023745.1|803846_804047_-|DUF2613-domain-containing-protein
MTNNRLVAGAVAGVAGILVGLGAVFLGGFLASENSPSTDLNNISPNNGFVQGSVDYGSRGGAGETN
>NZ_CP049836.1|WP_165630774.1|799426_803725_-|DUF3367-domain-containing-protein
MSLLICLLQSPGRIAADTKLDLTANPLGFLARAAHLWTPNAPMGQVQNQAYGYFFPHGAFFALGDVLAVPPWIVQRLWWAVLLTVGFVGIVRLAEMLRLGSPASRIIAAAVFVLSPRVLTTLGSISSETLPMMLAPWVLIPVVRALDTRAENAAPLWREAARASAAVALMGAVNAVATLAALGVAALWWLLHSPRDRRWWRFGAWTAAGLTLACAWWVVPLLILSRVSPPFLDYIESSRVTTQWTSLTEVLRGASSWTPFVSPERVAGAVLVTQPAAVLATGTIAAAGLAGLCMRHMPFRGRLVAILGVGLVLMCVGYAGELGSPVAEQVRVFLDGSGAPLRNIHKFEPLLRIPLVLGVAHLLARVPLPGSASRRETLSAFAQPQRSRPVAATIVLLVAVIGAGSLMWTGQLAPDGTYQAIPRHWQQTADWLAEHSERDDGAPPARALVVPGAPFADQLWGLTRDEPLQPLSDTPWAVRDAIPLTPPGAIRALDSVQREIAAGRGSPGLAATLAGQGIGFVVLRADLDPDTSRSARPLLAQQALDESPGLRRVAGFGPPIGPPSVRGVVRDNGLRPPMPAVQIYAVGEPGAPTTSTGPRLVDTTGLPRIAGGPEAIAELADVRARQGLPPLGPVVLDADARRAGIVDGPLIVTDTPADRETDFGRVDDHSSAIRSPSDPRRTQNAVADYPVDGQPLVHGEWLLDNESGEVEVSTSGSAADAVQPGQTSPANSAAAAFDGNPQSAWVSGGLETAVGRWMRIGFTTPRTDLAVTLTTAKALGPDVTSALITTEAGSTVVSGLAPGEPVTVTAPSGPTGWLQIRALRTDDGTAGNQFALGEVTVSDLRTATPLRIRHRVVLPELEAGTGVAQWLLYQELSGRASCVSDPERQMTRCAPGLTLSPETSAVFGRALSVPSDVTVSPTAILRPRPGDALDRLLAEDDRVTARGPRPVTDPRGGPAAAVDGDPGTSWTAPEIPDERSSPASDARADDDAAADEHTPTLVLDLPREQRVDSLTIAAPRGYPAAPTEVAVDLGTGEQIREVDENGVVRLDPAVTDRVEITIRAQSDLIDVNSLGFASPAPPGIAEVQVFPSPATGTDAERIVEIGCDAGIGLTVAGQVVRMSVRATASELRSGQPVAGRPCGGGRLVLPAGQQEVSVNPGDAFTVDALSLVDGDPVSAPASTSPEVTEWSPARRAVTVDAGAQRLLVVPESTNPGWQAHLDGAQLRPVVVDGWQQGWVVPAGAGGTIELTFRFDSLYRWALVIGLALMALLLVAAWWPSARRTRAGEPIVVPSGRGTVLVTGGVVLAAAWLVSGWWGLAAAGVVGILAAAVPQKSGVTITFVAMMTATIGLAAGPWHASGGYHGSQWWVQLPALVAVSMTAWLVFWSAVDDRPDDDGPDDDKASAASWRERWRRRFSRLRNQFRAGSSMKA
>NZ_CP049836.1|WP_165629444.1|797046_798231_-|DUF3068-domain-containing-protein
MSSPSSSSHPEPHRWSTADLAGPTLIFVGAFLLAVTIALPTLLVGGFRTIPLSTDFTTVATADDATIFDRCSLETRTARTVGADLVRQQRVVAVQPSDEHRVTLQAGTSIQAEKLRIDDREVDPGDPRPGVDADDPAQPCNEATVNAIKDRVTLDRKNALPRLAARGASEIQYDSGQAAVLVPDRRGVTYLLPFDTATADREFFDPITRTTVPLVYDGDTEVQGRDVARFRAEVPDTDLAREALGRPVGTNVSITRPASWFGFGDSSRPLTASLHHRSSWDLAVDTRTGTIVDATITVDEAYRFPDGIPGVPTGFELPHLRATFGYDDDTQARMTDLADDLASPILIWGRLVPIGTGVLGVVALLAGLVLTNPAWLPTRFRRRSGAETGGGQPE
>NZ_CP049836.1|WP_165629443.1|796563_797034_+|polyketide-cyclase
MSDNESTQVTVQRTIEAPVDAVFDVLSNPERHQALDGSGFIRGVDHADRIQQVGDVFTMNMSGDHMGGDYKTDNHVTGYAKDKLLAWQTAPAGTEPPGWEWLWELESQGPNETLVRHTYDWSKVTDKKLLEKVKFPLVTEHQLNDTLGRLAAELTS
>NZ_CP049836.1|WP_165629442.1|795329_796514_+|polysaccharide-biosynthesis-protein
MQQTRRTTGTVGAVGSVAIGSMVANVCMYVVHLVASAHFLDVSEYGEFAVLLSAMLVLGVPAMALQNVIAREVVLGGDEGRLRALGVVTTCWVVVLTVVATPLVALLLRTDVATTAAALASAPLLALIAAGQGILQGRGEFRALSWVLAVVGVARSMPIIGAFAAGAGPAGGLLAGTLGAAASAGVVWLVVWSMSRAGGPGRAPSGAAGVLSVVRASQVQLVLIVASSIDLLLSPRVLDAEEVGVYALGAIATKVAFWLPQAIGVVFYPRLADPARSSASLRQAVTVVAGIGVVLTVLAGAAGPVVPFVFGDGYDALVPILWLFAYIGAALAVLQVVLLSAIARDRTRVALGPWLVVGAEVLVIVTLTGSVVGVAGTAAVAVTIAALGTWAVAR
>NZ_CP049836.1|WP_165630773.1|794228_795167_-|CoA-ester-lyase
MYDDNPTYDAESTDIGSRIDPVLARSWLLVNGSHYAKFEPASRSRADIVVLDIEDAVAPKDKVSARDNVVRWLGPKEGTAGPGAGDWVRVNGFGTPWWVDDLEALSQTAVGGVMLAMVESVDHVTETAKRLPGLPIVALVETARGLERISEIAATKGTFRLAFGIGDFRRDTGFGENPQTLAYARSRFTIAAKAAHLPSAIDGPTVGSSALKLSEATAVSAEFGMTGKICLTPGQCAQVNEGLSPSQDEITWAREFFAEFERDGGEIRNGSDLPRIARATKILDLARSYGITESDYDDDPVHAPAPSDTHHF
>NZ_CP049836.1|WP_165629441.1|792484_794215_-|hypothetical-protein
MTPRRLLPVLYGTGVAAAAAILGPLLPGLIGAGDRYLLYRDAVSTPRTHVTDTTLGIGDLPPRAVPQDWFLAMVSTVVDGGIVVLAALAASLVCAGVGYGRLAARLVPGAGRTGAAAATLVAVWNPYVAERLLQGHWSLLAGYAALGWILVAIMDLRERPDTVRFSQLGGLFAVAGLTPTGSVLAAITLATALVARPIGLRPTMAVVALWLLSTLPWLLTASISDAPTTSAAAGVEAFGLRSEPWLGPVGTALSLGGIWNADAVPASRTIGWAAVATLGLLLVVAVGAGHLWRRRTESDPLVRTIAMLAAVTAILLMLSTFGPVRTGLGFVVEHVGGGGLLRDTQKFAALLVPAVAVCVAAAVAAARRRVPSGFAFAAVALLAVAPLPDLAWGIGGAVRGIDYPDEWRQVAEIVPPDRGSVALWPPGTVREYPFARDPSLDPAARMLRAPVVESGELRVDGEVIDPAGEHAAAVTRVLESGGSPVALAELGVGWVLVENGSPPNQLADAGRLVFDGPDLRLYQVGDVVDRSADATDRAIALGAHLVWAALLITGLVGLGVGVISGASRTARRRTSP
>NZ_CP049836.1|WP_078113253.1|791367_792528_+|glycosyltransferase-family-4-protein
MRTPSNILLLCWRDTRHPQGGGSETYLERVGAELARRGANVTFLTSAYPGSLRHEHRDGMRFFRAGGRISVYPLMLATIVAGRLGFGPLSGCRPDVVVDTQNGVPFFSSLVSPAPTVVLVHHCHREQWPVAGRLLGHIGWFLESRVSPRVHRRNRYVTVSTPSKSELVALGVDAGRIAVVRNGIDPVPHGIEAPARTGASTPGVPVRLCVLSRLVPHKQVEDALTVLARLRRDGVDARLDVIGGGWWSDELHRAAADLAVTDAVTFHGHVDERRKHELLARARVHLMPSRKEGWGLAVVEAAQHGVPTIGYRSAAGLADSIDDGRTGLLVDGVDELASATRKLIDNPDEAHRLGRNAQTTASRYSWSATCDGFMATFDAVLSDSRR
>NZ_CP049836.1|WP_058252224.1|806274_806832_-|universal-stress-protein
MDVGSDSSGSATAGRGSGGNSAAQTLMIAYDGSPNADRAIRYAGQFLRAQSAVVVTAWQPGGMTPARMSTLAGGMQPFIDTQLDAGVDQALEDEAASINERGVTLAAECGLTARGSLVEVESTVWGALVAAAEALDVDLLVTGTRGASGLKALLRSSVAERVLKHCHRPVFIVPAKCEKEPQVTL
>NZ_CP049836.1|WP_165629447.1|806930_808097_+|glycoside-hydrolase-family-3-protein
MTTGTVAVLCAALAACASSTPDSPPPTPSYSASSSLASASSSASPTTVPVANSCGASELAKLSVRQKLAQLIVVGVTGAADAQQIVENEEIGGIFVGSWTDKAILTSGAAARISQNSPIPLMVTVDQEGGRVSRLSALGIDHASARELAQTKTPEQVRAIAADVGRKLKRLGVTVDFAPVADVSDESDNEVIGDRSFSNDPEVVSEYAGAYAAGLADAGITPVYKHFPGHGHGSGDSHLGVVTVPSLAELQDSDLVPFRTLLRDPGTAGAMVGHLIVPGLTRGLPASISRPAIQMLRTGVGYDGPRFDGVIYSDDLSGMAAISAQYPIEQAVEKFILAGGDVALWLSTDRVGSVLDNLERAVSSGRLAPARLDDKVVRILRSKGVVNC
>NZ_CP049836.1|WP_058252311.1|808195_808798_+|TetR/AcrR-family-transcriptional-regulator
MSGGTKRLPRAVREQQMLDAAVKVFAQNGFRETSMDAIASEAQISKPMLYLYYGSKDELFSACIARESGLFIDAMSVGFDPSLSQREQAVTVIREFLRFVHEHRQSWRVLYRVAIGTAGFAGIVSESRQRVTEMVAQLIKAGTTVEVDSDIDFELTAVAIVGAAEAVADRITEGDVDLERATSLLVGITWRGLKGVGTDA
>NZ_CP049836.1|WP_165629448.1|809004_810528_+|SAM-dependent-DNA-methyltransferase
MITGEQKSKVDAVWDAFWSGGIANPLQVMEQITFLLFIRRLDDEQTRALNRANLTKKPIQDNPFPVDREELRWSVFKNYSADEMFETVDKKVFPFIQTMRDEDSTYAHFMKDARLQIPNAAMLVKVVDLLDKIEMRDLDTKGDVYEYMLAKIASSGQNGQFRTPRHIIKLMVEMMAPEPGDTIVDPASGTCGFLVAATEYMREHHAADINSGKNAEHFHNDMFHGFDFDHTMLRIGSMNMLLHGVEQPDIRYRDSLAEANTGDASAYSMILANPPFAGSLDYENTAKDLQQIVKTKKTELLFLALFLRLLKPGGRAAVIVPDGVLFGSSKAHKTLRKMLVDDHKLDAVVKLPSGVFKPYAGVSTAILFFTKTNSGGTEDVWFYDIQADGYSLDDKRSPLLDSDKLGPFADLSDGDHVKNNLPDVLRRWADRDGSELKRARTEQSFCVPRNSIEEQGYDLSLNRYKEIVHEEVEHRAPEEILDELEKIELDIQSGLAELRQMLAGGAE
>NZ_CP049836.1|WP_165629449.1|810524_811628_+|hypothetical-protein
MNWPEVSLGEICEFKYGKSLPAKQRVPGQVAVYGSNGQVGTHESSISSGVTIVVGRKGSLGEVHLAPGSCWPIDTTYFIDSSATEADLHWLYHRLKGLNLTSLNRAAAVPGLNREDAYRQRLLLPPLPEQRRIAAILDHADALRAKRRESIARLDELSQSIFHDMFSTLEWNAKFDSIISAGPTNGLYRPASDYGAGVPILRIDGFASGAVLSDSHQWKRLRADREEIQQYSLVAGDLVVNRVNALSHLGKSALISAISEPSVYESNMMRVRIDANRANSDFVLAWLQTRRAKQQILRKAKKAINQASINQADVKSLVLPLPPLELQYRFAERVEAVRVERAASERFNASADDLFYSLQSRAFRGEL
>NZ_CP049836.1|WP_119699221.1|813384_814896_+|IS21-family-transposase
MKSAKDRMDIISAYRELGSYRAAAEVCGTTHKTVKRVVDRFEADDQPPDRKERARNYDAVAELVAERVERSHGRITAKRLLPVARAAGYEGSARNFRRLVAQEKTQWRRDHHRGRRPAVWAPGDYLVIDWAVIGGLHMFCAVLAFSRWRFVRFATNETSTTTLGFIAEALEEIGGVPNKVLADRMGCLKGGVVANVVVPTPTYVRFATHYGFSPDFCHGADPESKGIVENLCGYAQSDLAQPLWTEAKIAAGRDDVQLDVHAANRAARDWCVEVNTRRHSDTLCVPADQLTIERDTLSPLPSLRAQVGPPPVTRKVDRLSCIRYASARYSVPNRLIGTTVTLIQDGERLLIAEPASGEVVADHLLAAPGEVVLNDDHYGGPRTPPSRAPRPKTAVEKQFCDLGEVAEQFLVGAAAIGNTRLGGELDDILGLVTSHGREQVLTALTRAVAFRRFKAADVRSILDAGAGTPNPRPAGTALLGHLPTAPTRSLDAYKLGAGDKEVS
>NZ_CP049836.1|WP_062394395.1|814892_815681_+|ATP-binding-protein
MTTTTSTPVAPQTVPPLPADLDHALRRLKLASIRRSAPEVLLTAKTQRWTPEEVLRTLVETEIAARDASNIRNRLKAAGFPVTKTLESFDVAASSIPANTFEYLSSLEWVRAQHNVALIGPAGTGKSHTLIGLGIAAVHAGHKVRYFTAADLVETLYRGLADNTVGRTIDTLLRQDLLILDEIGFAPLDDTGTQLLFRLVAGAYERRSLAIASHWPFEQWGRFLPEHTTAASILDRLLHHATIVITDGDSYRMTHRTEVPPT
>NZ_CP049836.1|WP_165629450.1|815887_816268_+|hypothetical-protein
MSTPHYDSLIWATRGRTWGFRFVLDAGLGDPLSDYERVFGDLQHAPTAWRSHGGQVALRFPDPLGRQDSAGRVIPHEFVIFGDLAAAVNSVEDGLHKVWPLVSEVYASVWDAPHPPDLRGQSTEGK
>NZ_CP049836.1|WP_165629451.1|816309_817290_-|hypothetical-protein
MANEVGLPVRAVVKLARRLGGKGVRDRSSLISPMVAGQIREKHSMKSSVALRTRRDDLARSAKSRQLSKAEQLEYRELVSVFGLPTASSMRPTSKKSGGGSTTMRAQNFSSEKAPREQQGSSKNAVSGPGTARPANSVAIATLAQELHLSADYIAMLAGRYGVGSDTEHPKVPADIAKVIRSAYGLRTTVAKRKRYQLLKRQLARKPGVGKSQEFGELKFMFEGKEKSKGPRTKPAAKAKPRSGQKPSAPPRRVCRLCRKEFYSTEPSHGCALDQRTPRLNDLPPIKPVKSKRQRRPSVLGPEYDISPRRSNIEVPNGHPGTGRRR
>NZ_CP049836.1|WP_165629452.1|817510_820957_+|DEAD/DEAH-box-helicase-family-protein
MAGNFDFLQAEWPQIYASAKSAERDALFDARTTCFYARRTLESTVKWLYTAHHLQAPYRDDLSARIHEPAFQQLLPPQLFLKMNLIRKSGNIAVHDERPVGKEFGLRVLGELFHILSWLAREYASNPESKPSAATQIDRERLPKPGGGPGVAKTVAQLQQLNTQLEQKDVELAQAVQQRADLTAQLTARDDQLKAADAKKATLEELVATLRAQVAAAKDAAAPHPDTHDYNEAQTRRDIIDLMLHEAGWPLTEMRDREYPVTGMPDGKNGYVDYVLWGSDGLPLAVVEAKRTSKDAGAGKHQAKLYADRLEVMTGRRPVIFYTNGFEIYLHDDLNYPPRLVEGFYTRDELELEIQRRTSRKKLADIDVPTSIVERHYQTRAIRRVTDRFENERQRSALLVMATGSGKTRTVIALSDMLMRANWAKRILFLADRVALVKQAVNAYKTFLPEAPPVNLLTDKNTDGRVYMSTYPTMMGLINEIDNGRRRFGPGYFDLIVIDEAHRSVYQKYRRIFEYFDSFLLGLTATPKDDVDFNTFQLFGLETGVPTDDYELEEAIKDGYLVPPRAVNVPLGFQRHGIKYDDLSEEEKKRWEAQDWELDASDDEYPDAVDAEAVNKWLFNTDTVDKALEVLMTKGHKVAGGDRLGKTIIFAKNQRHADFIAQRFDVSYPQHKGTFAAVITHSVSHGQDLIDRFSQPESEPHIAISVDMLDTGIDVPDVVNLVFFKPVRSKTKFWQMVGRGTRLRPGLYGPDQDKKDFFIFDLCGNVEFFDAHPEAAEGTIAKSLSQKLFEKRTDIVFALDRSHSYPALRDDVADGLHRHVQSMNLDNFLVRPRRRQVETYRDRSQWESLSEPKVREIVDNLADLPTTIRDTDEMAKRFDLIVLSGQLAVIEGDETELSRRRNRVREIADGLLEQLTIPKIKSKEPLLREVASDEWWVDVTPEMLEDARKEIRSLVGLLEKTKQPIVYTELTDTFIGDVEEVDVPIMRTGTDKERFTAKIRDYLRYQPDNLALQKLRTGKPLTQSDLDSLQELLGRSGAGSPEELHQAVADAQGLPKFIRSLTGLDRQAVNERFTAFLAETNATADQIDFVGLIVDYLTRNGSMEPGKLYDPPFIDKAPQGPDQVFDMDRLSRLVQIIEWFDEAGGQSA

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Crispr_ID: NZ_CP049836_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049836_2

1441407-1441507

Orphan

Consensus_repeat	Method
TGCTCCCTGAGGTGCGAGGAGCGAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP049836_2

>merge|NZ_CP049836|2|1441407-1441507|CRISPRCasFinder
TGCTCCCTGAGGTGCGAGGAGCGATCGCGCGAGGCTTTTGCTCCCTGAGGTGCGAGGAGCGATAGCGCGAGGCTTTTGCTCCCTGAGGTGCGAGGAGCGAT

>NZ_CP049836|2|2|1441407-1441507|CRISPRCasFinder
TGCTCCCTGAGGTGCGAGGAGCGAT	CGCGCGAGGCTTTTGCTCCCTGAGGTGCGAGGAGCGATAGCGCGAGGCTTT
TGCTCCCTGAGGTGCGAGGAGCGAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049836.1\|WP_058252402.1\|1439675_1440557_-\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224995
NZ_CP049836.1\|WP_058252405.1\|1436952_1437828_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223673
NZ_CP049836.1\|WP_078114131.1\|1447343_1447889_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049836.1\|WP_078114117.1\|1445730_1447098_+\|cytochrome-P450	unknown	unknown	gnl\|CDD\|225035
NZ_CP049836.1\|WP_058252407.1\|1434558_1436181_-\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|223981
NZ_CP049836.1\|WP_058252395.1\|1447895_1449164_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049836.1\|WP_078114116.1\|1449160_1450069_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212491
NZ_CP049836.1\|WP_078114118.1\|1444921_1445734_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|181113
NZ_CP049836.1\|WP_058252397.1\|1447097_1447289_+\|ferredoxin	unknown	unknown	gnl\|CDD\|224064
NZ_CP049836.1\|WP_058252409.1\|1433130_1434165_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|223787
NZ_CP049836.1\|WP_058252401.1\|1440553_1441294_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|236094
NZ_CP049836.1\|WP_078113136.1\|1450471_1451470_-\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|187539
NZ_CP049836.1\|WP_058252403.1\|1439289_1439679_-\|carboxymuconolactone-decarboxylase	unknown	unknown	gnl\|CDD\|223672
NZ_CP049836.1\|WP_033206302.1\|1443096_1443678_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NZ_CP049836.1\|WP_058252408.1\|1434211_1434562_-\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|224069
NZ_CP049836.1\|WP_165629688.1\|1441565_1443032_-\|aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|275104
NZ_CP049836.1\|WP_058252404.1\|1437952_1439281_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049836.1\|WP_058252406.1\|1436173_1436947_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224041
NZ_CP049836.1\|WP_159371806.1\|1431404_1432751_-\|IS1380-family-transposase	unknown	unknown	gnl\|CDD\|379340
NZ_CP049836.1\|WP_058252400.1\|1443677_1444922_+\|cytochrome-P450	unknown	unknown	gnl\|CDD\|225035

Protein	Function_ID	Function_description	E-value
NZ_CP049836.1\|WP_058252402.1\|1439675_1440557_-\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|224995	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism].	3.92832e-63
NZ_CP049836.1\|WP_058252405.1\|1436952_1437828_-\|ABC-transporter-permease	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	1.13201e-70
NZ_CP049836.1\|WP_078114117.1\|1445730_1447098_+\|cytochrome-P450	gnl\|CDD\|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	1.0942e-63
NZ_CP049836.1\|WP_058252407.1\|1434558_1436181_-\|FAD-binding-protein	gnl\|CDD\|223981	COG1053, SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion].	5.99672e-46
NZ_CP049836.1\|WP_078114116.1\|1449160_1450069_+\|SDR-family-oxidoreductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	4.35818e-44
NZ_CP049836.1\|WP_078114118.1\|1444921_1445734_+\|SDR-family-oxidoreductase	gnl\|CDD\|181113	PRK07775, PRK07775, SDR family oxidoreductase.	1.2724e-135
NZ_CP049836.1\|WP_058252397.1\|1447097_1447289_+\|ferredoxin	gnl\|CDD\|224064	COG1141, Fer, Ferredoxin [Energy production and conversion].	2.30567e-08
NZ_CP049836.1\|WP_058252409.1\|1433130_1434165_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|223787	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism].	2.95211e-31
NZ_CP049836.1\|WP_058252401.1\|1440553_1441294_-\|SDR-family-oxidoreductase	gnl\|CDD\|236094	PRK07774, PRK07774, SDR family oxidoreductase.	7.31033e-151
NZ_CP049836.1\|WP_078113136.1\|1450471_1451470_-\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|187539	cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs. This subgroup contains proteins of unknown function related to aldehyde reductase and flavonoid reductase of the extended SDR-type. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	2.08024e-77
NZ_CP049836.1\|WP_058252403.1\|1439289_1439679_-\|carboxymuconolactone-decarboxylase	gnl\|CDD\|223672	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown].	2.68528e-09
NZ_CP049836.1\|WP_033206302.1\|1443096_1443678_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	6.58782e-10
NZ_CP049836.1\|WP_058252408.1\|1434211_1434562_-\|ferredoxin-family-protein	gnl\|CDD\|224069	COG1146, COG1146, Ferredoxin [Energy production and conversion].	4.14036e-09
NZ_CP049836.1\|WP_165629688.1\|1441565_1443032_-\|aldehyde-dehydrogenase	gnl\|CDD\|275104	TIGR04284, aldehyde_dehydrogenase, aldehyde dehydrogenase, Rv0768 family. This family describes a branch of the aldehyde dehydrogenase (NAD) family (see pfam00171) that includes Rv0768 from Mycobacterium tuberculosis. All members of this family belong to species predicted to synthesize mycofactocin, suggesting that this enzyme or another upstream or downstream in the same pathway might be mycofactocin-dependent. However, the taxonomic range of this family is not nearly broad enough to make that relationship conclusive. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP049836.1\|WP_058252406.1\|1436173_1436947_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224041	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism].	2.29028e-94
NZ_CP049836.1\|WP_159371806.1\|1431404_1432751_-\|IS1380-family-transposase	gnl\|CDD\|379340	pfam13701, DDE_Tnp_1_4, Transposase DDE domain group 1. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	5.49145e-66
NZ_CP049836.1\|WP_058252400.1\|1443677_1444922_+\|cytochrome-P450	gnl\|CDD\|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	1.72324e-97

>NZ_CP049836.1|WP_058252401.1|1440553_1441294_-|SDR-family-oxidoreductase
MSSKRFENKTIIVTGAAGGIGEAYARALAAEGANVVVADLADEKGKQVAADIGGLYVSTDVAEEDSAKALAAATVDAYGSIDGLVNNAAIYGGMKLDFLITVPWDYYKKFMSVNLDGALNVTRAVYPHMTNGGGAIVNQSSTAAWLYSGFYGLAKVGVNGLTQQLATELGGQNIRVNAIAPGPIDTEATRSTTPKEMVADIVDRLPLKRFGTPEDLVGMCLFLLSDEAGWITGQIFNVDGGQVIRS
>NZ_CP049836.1|WP_058252402.1|1439675_1440557_-|NAD(P)-dependent-oxidoreductase
MSESSPIRLGYVGLGNIGGPMAGSLAAWAGGLTVFDLSSDAVAKVVEKGATAAESLADLAASADIIGICVLDDAQVRTVVAGPDGLLSAARPGTVITVHSTIAPETAVELADLCAAREVTLLDAPISGGAMGAASGRLAIMVGGPRDAYEKLKEPFALTADMLVHAGPEVGAGTRMKLARNLLHFISFTATTEAARLAEAAGIDITKLGKVVRHSDAVTGGAGAIMLRDTTAPVERDDPWYGILAGVRTLGEKDLTLALALGEELGVDLPLGQLALRNLATGLGVPHLEGEPA
>NZ_CP049836.1|WP_058252403.1|1439289_1439679_-|carboxymuconolactone-decarboxylase
MTRSNISDDTPDEARKRGLAKMSEVYGWEVSDGPGDYFAHTADQVFGNVWARDGLSNRDRRLLLLGALAASNNIDVAEIQAGAALGNGELTPEQLEEISLFLCYYVGWPQGTKMHFMFGEVIKQHRKKK
>NZ_CP049836.1|WP_058252404.1|1437952_1439281_-|hypothetical-protein
MRFRVLQGGDGCSLLSASPLPDLAAAGYTDIEYAASGVAEKIVGDPPAPAAEFTTRVVVRRPAEPATFSGCVVVEWLNVSSGADAAPEYSYVAAELVRSGHAWIGVSAQFVGVEGGTGSVGVATGAPQSLAAKDPERYAGLHHPGDAYCYDIFSSIGRAARDTAGADHPLAGLTVATVLAIGESQSAMALTTYVNAIGPDAAPFDGYLIHSRAAAGLPAGEVGSGIDVATVFGREPTTIRADLDAPVFVVQTETDVLTNFRYHTARQPDSDRLRVWEMAGTSHADLHQVGDFEEFLGCPDPVNRGQQRFVLRAALRHLRSWADGGDPPPAADPLALRDIDGADPVFELDDIGNVRGGVRTPCVDAPTQVLSGIVADPVSRICLLFGTTFPVPADALAARYGTRDEYEKHYRNAADAAIAGGFVLAEDRDELLADANPDLIPN
>NZ_CP049836.1|WP_058252405.1|1436952_1437828_-|ABC-transporter-permease
MTLELTTPVGVAPAPSAAGPVDVPSDGPAARVRRRRLSRHAATRTLRQSIGLILVVVIWQVGARGWLGATTPAPTEVVEAGWELISTGELWTHLAASGRRVAIGLAIGIAIGAVLGAAAGLFKVAEDLVNAPVQVLRMMPAVALVPVFIIWFGIGDSFKIALIIVAPIFPIYLNFLAGIRGVDQKLIEAAESLELTRFELVRYVVLPGALPQIFVGLRQALGIGWLVLVVAEMQTTPVGLGFLMNDAKEYLRTDQIFLVLVIYAVLGLLTDIGVRILERRFLSWRNGFEGR
>NZ_CP049836.1|WP_058252406.1|1436173_1436947_-|ABC-transporter-ATP-binding-protein
MSADRVDGVRVLGAGREFDGRRVLDRVDLTIARGEFVALLGASGSGKSTLLRGIGGLDRGFTGTIEAPSAKAIVFQEHRLMPWMSVWRNVALGLRGGDTEARALRALDEVGLAAKSGAWPSTLSGGEAQRTALARALVREPDLLLLDEPFGALDALTRINAQRLVARLWEAHRPATLLVTHDVEEALLLADRALILRAGRIAQEIVVDLPRPRQVTDPEFVALRSQLLAGLGVGGTDAESTGPTTTPTTTRREFTHV
>NZ_CP049836.1|WP_058252407.1|1434558_1436181_-|FAD-binding-protein
MSDVLTLSTDVLVIGGGPAATWAAIHARDAGAEVIVVDKGYCGASGTTAPAGTGVWYVVPDPDKRSAAKASREALGGYLADHAWMDRVLDRTYANMHRLGTEGRYPFPIDEHTGEPIRTGVQGPEYMRRMRAWVRRRGVQILDHSPVLQLLTDSQGAVRGAAGHQRQTGRDFRISAGAVVVATGGCAFLSKALGSNVDTGDGALMAAEVGASFSGMEFANAYAIVPKGSTVTKTAYYGYATFFHADGRIVEGAGSTKGRSVIARTLLQEKVYAQLDRADERVAAQMRQGQPNFFLQFDRRGINPFTDRFEVDLLAEGTVRGTGGIDIVDADCWTGVPGLYAAGDAATRERICGGFTGGGSHNSAWAMSSGGFAGTAAARAARDAGGASPLDRLSGAGTVGLDSARSGITPDEVVTAAQGELIPFEKNYLRHGDRMGPALNALDSLWDEVSGPAYGARTPAGRVRAREAAAITAVGRWIYRSALARTESRGMSKRADHPELDPALGDHVRTGGLGDVWVAAPGSAVRRPDPAPRLAVRIPA
>NZ_CP049836.1|WP_058252408.1|1434211_1434562_-|ferredoxin-family-protein
MIELVVASACIACDKCVNACPTNVFDTGPDGVPVIARQSDCQTCFMCEAYCPTDALYVSPESSPLGTRESLPLELIGSYRERLGWGKGRAPGSLTAVGPPIPHGDPPPRLVEQHAD
>NZ_CP049836.1|WP_058252409.1|1433130_1434165_-|ABC-transporter-substrate-binding-protein
MPTTSSFGSPLRRIRRALALLSAGVAIAAVAACGSDDASSAQREVIDTLRIGVIGSSNVIAGPVGFAHSRGELLEAFAPLGVNNVEVFNFPNGPDLNQALIGGRLDVASYGDTPALVARGSGLQTRLLSINQFDNDAGVVAKDPSIRSLADLAGKNIGVPKGSYIDRYLQGALAEQGITANLIHLYPADQEAPLNSGEIDGAALPGVIPSVALQTFEGKGFHLVDSVYRDHPDLAGTSVTVSSDQFLEKNPDFAATWQQLHASSVRYAKANWEEYLQFELGNSKAPEAAVRAAANPEGYSEEPFPARAVELLTGTKAFLVEQGSIEEDFELDSWLQRPATGANS
>NZ_CP049836.1|WP_159371806.1|1431404_1432751_-|IS1380-family-transposase
MTTSGGVLLTKTVQVSGLGAELTAAMAPWRTAATVHDPAKIVLDLALTLATGGDCVADVATVRAQPQLYGQVASDPTISRVISRLATDVEAVSTAISAARAAARERVWGIARPLEGTAGSIDGGLVIVDLDATTVTAGSAKEQAQKTYKRVFGHSPMCSFVDHGAFGTGETLNLDLRRGGASPKGADMHIAALEAALAQLPAAERAQVLIRTDSAGCAKKFLAHLAEQRLQYSVGFTISELVKDALDVLPEAAWVTAINTDDADPRADAQVAEITDHMPRSVRDTETAYEPWPPGMRLIARREYPHNGAQHLITDIEGRRYTVFATNTRGRGWTLPILELRHRQRARAEDRIRCLKDTGMANLPFDSFAKNQLWLDIVALASDLIAWTQTLGYHRHDPIRRWEPKRLRHRLFTVGGKIITHARTTTLRLPTDWPYNHHIRHGWQRLTA
>NZ_CP049836.1|WP_165629688.1|1441565_1443032_-|aldehyde-dehydrogenase
MPLRPESASDLLIDGKLTPGSGGVFDVVNPATEEVIGQAADATTADMDAAITAARTAFDTTDWSRDHAFRARCLRQLRDALLAHGDELRELTIAEVGCPSFLTHGPQFEGPVTDLGYFADLAESYEWTRDLGTAKPMGLKNHRELRSEAVGVVGAITPWNFPHQINFAKIGPALAAGCTVVLKPAPDTPWCAALVGKVVAEETDFPPGVLNIVTSTDHQLGAQLSTDPRVDLVSFTGSTATGKKVMAAASESLKKVFLELGGKSAFIVLDDADIGSACAMAAFNVVTHAGQGCAITTRLVVPRGSLDEAITATRDAMAGLPAGDPTDGGTICGPVISARQRQRIESYIELATSEGGTIEIGGGRPADRPAGFFVEPTLISGLDNSARVAQEEIFGPVLVIIPHDGDDDAIRIANDSPYGLSGMVYGTDEDRINKVVNGVRTGTMGVNGGIWYSADVPFGGFKQSGIGREMGVAGFEEYLETKAVARPA
>NZ_CP049836.1|WP_033206302.1|1443096_1443678_+|TetR/AcrR-family-transcriptional-regulator
MSSPVSQESTRRRLTQQQAETVTRLTDAAVDVLNAEGFDGLTVRSVAKIAGVAPATAYTYFSSKSHLVAEVFWRRLSAGVLEPDPGAPRSERVAQVLREVALVVAGEGQLGGAVTVALLGSDPDVEHLRVRIGAFIRRRLAAALEEDPENPGPLLDALEMIYSGGLVYAGMGHMTYEQTSERLVAAAHLLMEK
>NZ_CP049836.1|WP_058252400.1|1443677_1444922_+|cytochrome-P450
MTETTAVSGMEHELPFDPYAYGFHEDPYPTYSRLRAEAPVYYHGGMNFWALAGHADVRAAFRDTQRLSNSWGVSMDPSAYGPDAHKSMSFLAMDDPKHMRIRKLVSKGFTPRRVNELTGRITALTHQHWSRCLDKGEFDFVHDFAALLPMDVVSELLGVPEADRTRLRHQSDLLLHREDGDLDLPEAAVYAYIELHKYYSELIADRRKNPGEDLVSALIAAEIDDDETGEKTKLTEDEIVGFMVLMVVAGNETTTKLLANALYWGWRNPDELAKVFADPEVVVPDWTEETLRYDNSTQIVVRRVIEDAPYGDFVIPAGDRVLLLVGSANRDVEVFGADADRYEIGRDCAQSLMSFGLGAHFCLGAHLARLEANIGLTEVIKSIRAVEIDADKAVRVHSVNVRGFAELPVKVTVR
>NZ_CP049836.1|WP_078114118.1|1444921_1445734_+|SDR-family-oxidoreductase
MAFRPHPERRPVLVAGASSGIGAATAEFLSAAGHPVALAARRLEKLQELADKITAAGGEAVAVPLDVTDEQSVLDCVAKAEAALGPLEIVVAGAGDLAVGLSYETGTDHFADQINIHLTGAYRIYRAVIGGMIDRARGDFVFIGSDVAIHPRPWSSAYVAAKSGIDGLVATIQLELEGTGVRAGVVRPGQTLTGMGMNLDPKTTENMLNDWITHGLARHGNFLSPEHIAQAVAAMVTMPRGAHMRSVEVEAEGAVSDKKRQAAQEKGTDG
>NZ_CP049836.1|WP_078114117.1|1445730_1447098_+|cytochrome-P450
MTAITESGLKQPNRVSGGEGEHGHLDELATDPLALFWRVREECGDVGMFQLADREVVLVSGSAANEEFFRAPEEDLDQAAAYPFMTPVFGEGVVFDTSPEERSKAIHNSALKGAHMKQHAVTIPNEVERIIADWGDEGEIDLLDFFAELTLYTSSSCLIGRKFRERLNGHIAHLFHDLEKGTDPIAYVDYNADIESFRKRDEARAELVEFIQGVMDERIANPTEDKEDRDLMDVLVQVGFDANTITGMFISMMFAGHHTTSGTAAWTLIELLRNPDYMQRVYEELDEIYGETPPGERPEYTFAHTRQMPQLENALKEALRLHPPLIILMRVVQNDFHVEDFEVKAGQSIAVSPAISNRLPEDFPEADTFDPDRYDKPRQEDLVNRWTWIPFGAGRHRCVGAQFAIMQLKAIFSVLFQNYEFEMLQPPESYRNDHSKMVVQLQQPCRVAYRKRQDA
>NZ_CP049836.1|WP_058252397.1|1447097_1447289_+|ferredoxin
MRVEVDLDLCQGHGMCELEAPEVFAAHTDHVEILDATPDESQRAEVEAGVHYCPTQALRIIED
>NZ_CP049836.1|WP_078114131.1|1447343_1447889_+|hypothetical-protein
MSFDRAELDEMKERWLAANIEAEKAGDWKPLADFYTEDATYGWNYGPNKDFMAVGREEIRELALGQEMEGLQGWEYPYQAWVIDDQTGDMIGLWKQIYEGTRDDGSHYALEGIQGSWFKYGGNFQFRWQRDFFDYGNVSALFIEMMKNNAMSEPMLKRVEKSAPGNLPGWYDFGKAPVAFW
>NZ_CP049836.1|WP_058252395.1|1447895_1449164_+|hypothetical-protein
MTSTAPTYQGLSQDQLAVLVPELLLSGQMIDRSGMAHLISAFGRDVMGKVAIEEWMAASPVYTHRMRTALGIDGDGVEDMFKCLQLDIGAPPQFMDFRYRIDDEYHGSFVLDHCGALLDVEPLGDDYVTTMCHDIEDPTFDATAIATNRRARIRPVHRPPRRPVDRTPHCEWTVTIEPDRDELPLPPDSVDMFETRAGQLVLSAIDTTETDGWVDYRGPLVEDLQFAEWSTSALVRVAEEVALQHQLLSLGFLVSLRRYAESEAQTTEIFRKQLIGIAGLAADRIRVALDLSADAAGLAQVLALHPCFGPTQYTGLTAEADGDTVTVRIPRESYAMTDGGWTSILDVDHVEPLQAAATAVDPYLVVADATEADGDLVVRITKADTPQKEYGEVAVARFSGGASFEFVDRGRSIPITPVGSSA
>NZ_CP049836.1|WP_078114116.1|1449160_1450069_+|SDR-family-oxidoreductase
MTSGGGWSPGGAGLGGRVAVVAGATRGIGLAVSYALAGQGVSVVVNGRDGQAVDDTVAEIRGGGGYAVGVRGSAGDDGVAQAMVEAALAEFGALDIAINCAGIAEPPGSTVLTIASDEFREQIDAHLMSAFHLLQAAGRVFVEQGSGSVVLTGSAASLGMFGGSGYPAAKGGVNALALAAAADLRDHHVRVNVVMPGAKSRLSSGDDYVAHIEGLHRRGILDDPTRDAALDPAPPEYVAPLYVFLASDAAEHITGEIFSAAGGFIGRFESQQASFVAYRDHKGTSPYSLDELAGILAGPAAP
>NZ_CP049836.1|WP_078113136.1|1450471_1451470_-|NAD-dependent-epimerase/dehydratase-family-protein
MPSLVIGGNGFLGSHLVRQLVDAGEEVRVFTRPTSDLRPLAGLGVDHVTGDLFDADAVARAMTGCDVVFHCAVDTRAWLRDPAPLYRTNVEALRSVLDVAARMPLRKFVFTSTAATIGRVNGRRATEDDVFNWAARAPAYVRSRVAAEDLVLRRAQDDAVPAVAMCVANTYGPGDWQPTPHGAFVAGAALGKLPFTVRGCRAESVGIDDAAQALLLAADRGEVGERYIVSERSIDTGEIVAIAAATADRQPPRVVLNRAALYTFGAVGSARGALTRKPVQLTIPSVRLMHFMSEMDHGKAERDLGWHPRPVTEAIADGARFWLERRAARRAG

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Crispr_ID: NZ_CP049836_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049836_3

2173982-2174055

Orphan

Consensus_repeat	Method
GCCGAATAGGACTGGGGACCCGA	CRISPRCasFinder

1 spacers

WYL

The CRISPR arrays of NZ_CP049836_3

>merge|NZ_CP049836|3|2173982-2174055|CRISPRCasFinder
GCCGAATAGGACTGGGGACCCGAGCGTTGGGGACCCGGGTAGGACGGCGCGCCCGAATGCGACTGGGGGCCCGA

>NZ_CP049836|3|3|2173982-2174055|CRISPRCasFinder
GCCGAATAGGACTGGGGACCCGA	GCGTTGGGGACCCGGGTAGGACGGCGCG
CCCGAATGCGACTGGGGGCCCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049836.1\|WP_068971535.1\|2165930_2166410_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049836.1\|WP_058252041.1\|2164136_2164316_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049836.1\|WP_058253129.1\|2178180_2179185_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379751
NZ_CP049836.1\|WP_058253147.1\|2177156_2178092_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225883
NZ_CP049836.1\|WP_058253133.1\|2171441_2172266_+\|maleylpyruvate-isomerase-family-mycothiol-dependent-enzyme	unknown	unknown	gnl\|CDD\|274422
NZ_CP049836.1\|WP_068971675.1\|2180708_2181851_+\|threonine-phosphate-decarboxylase	unknown	unknown	gnl\|CDD\|236128
NZ_CP049836.1\|WP_137808466.1\|2176174_2177179_+\|cobalamin-biosynthesis-protein	unknown	unknown	gnl\|CDD\|234919
NZ_CP049836.1\|WP_068971556.1\|2168663_2169647_-\|YafY-family-transcriptional-regulator	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|225253
NZ_CP049836.1\|WP_058252040.1\|2164312_2164651_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049836.1\|WP_137808542.1\|2181858_2182971_+\|Nif3-like-dinuclear-metal-center-hexameric-protein	unknown	unknown	gnl\|CDD\|376614
NZ_CP049836.1\|WP_058253131.1\|2175242_2176052_-\|spermidine-synthase	unknown	unknown	gnl\|CDD\|223498
NZ_CP049836.1\|WP_165629871.1\|2165275_2165938_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357
NZ_CP049836.1\|WP_068971674.1\|2179461_2179941_-\|low-molecular-weight-phosphotyrosine-protein-phosphatase	unknown	unknown	gnl\|CDD\|319971
NZ_CP049836.1\|WP_083229428.1\|2169717_2171334_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_CP049836.1\|WP_165629872.1\|2167469_2168561_-\|NAD(P)H-binding-protein	unknown	unknown	gnl\|CDD\|187556
NZ_CP049836.1\|WP_065630070.1\|2183794_2184487_+\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|180903
NZ_CP049836.1\|WP_058253125.1\|2183052_2183790_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224495
NZ_CP049836.1\|WP_068971554.1\|2166710_2167418_-\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|224185
NZ_CP049836.1\|WP_058252039.1\|2164650_2165151_-\|Asp23/Gls24-family-envelope-stress-response-protein	unknown	unknown	gnl\|CDD\|377129
NZ_CP049836.1\|WP_068971690.1\|2179991_2180678_-\|HAD-hydrolase-like-protein	unknown	unknown	gnl\|CDD\|319798

Protein	Function_ID	Function_description	E-value
NZ_CP049836.1\|WP_083229428.1\|2169717_2171334_-\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.09069e-104
NZ_CP049836.1\|WP_137808542.1\|2181858_2182971_+\|Nif3-like-dinuclear-metal-center-hexameric-protein	gnl\|CDD\|376614	pfam01784, NIF3, NIF3 (NGG1p interacting factor 3). This family contains several NIF3 (NGG1p interacting factor 3) protein homologs. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown.	5.52305e-46
NZ_CP049836.1\|WP_058253129.1\|2178180_2179185_+\|hypothetical-protein	gnl\|CDD\|379751	pfam15887, Peptidase_Mx, Putative zinc-binding metallo-peptidase. This family has a highly conserved HHExxH motif with a highly conserved ED pairing downstream. HExxH is indicative of a zinc-binding metallo-peptidase.	4.94097e-145
NZ_CP049836.1\|WP_058253147.1\|2177156_2178092_-\|hypothetical-protein	gnl\|CDD\|225883	COG3346, COG3346, Uncharacterized conserved protein [Function unknown].	6.09911e-41
NZ_CP049836.1\|WP_058253133.1\|2171441_2172266_+\|maleylpyruvate-isomerase-family-mycothiol-dependent-enzyme	gnl\|CDD\|274422	TIGR03083, TIGR03083, uncharacterized Actinobacterial protein TIGR03083. This protein family pulls together several groups of proteins, each very different from the others. They share in common three conserved regions. The first is a region of about 38 amino acids, nearly always at the N-terminus of a protein. This region has a bulky hydrophobic residue, usually Trp, at position 29, and a His residue at position 37 that is invariant, so far, in over 150 instances. The second conserved region has a motif [DE]xxxHxxD. The third conserved region contains a hydrophobic patch and a well-conserved Arg residue. Most examples are found in the Actinobacteria, including the genera Mycobacterium, Corynebacterium, Streptomyces, Nocardia, Frankia, etc. The pattern of near-invariant residues against a backdrop of extreme sequence divergence suggests enzymatic activity and conservation of active site residues.	1.0623e-22
NZ_CP049836.1\|WP_065630070.1\|2183794_2184487_+\|phosphoglycerate-kinase	gnl\|CDD\|180903	PRK07238, PRK07238, bifunctional RNase H/acid phosphatase; Provisional.	4.60303e-115
NZ_CP049836.1\|WP_068971556.1\|2168663_2169647_-\|YafY-family-transcriptional-regulator	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	1.4465e-46
NZ_CP049836.1\|WP_068971675.1\|2180708_2181851_+\|threonine-phosphate-decarboxylase	gnl\|CDD\|236128	PRK07908, PRK07908, threonine-phosphate decarboxylase.	2.09738e-134
NZ_CP049836.1\|WP_058253131.1\|2175242_2176052_-\|spermidine-synthase	gnl\|CDD\|223498	COG0421, SpeE, Spermidine synthase [Amino acid transport and metabolism].	2.72509e-20
NZ_CP049836.1\|WP_165629871.1\|2165275_2165938_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	3.86882e-36
NZ_CP049836.1\|WP_068971674.1\|2179461_2179941_-\|low-molecular-weight-phosphotyrosine-protein-phosphatase	gnl\|CDD\|319971	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase. Low molecular weight protein tyrosine phosphatases (LMW-PTP) are a family of small soluble single-domain enzymes that are characterized by a highly conserved active site motif (V/I)CXGNXCRS and share no sequence similarity with other types of protein tyrosine phosphatases (PTPs). LMW-PTPs play important roles in many biological processes and are widely distributed in prokaryotes and eukaryotes.	5.09226e-54
NZ_CP049836.1\|WP_137808466.1\|2176174_2177179_+\|cobalamin-biosynthesis-protein	gnl\|CDD\|234919	PRK01209, cobD, cobalamin biosynthesis protein.	1.01923e-112
NZ_CP049836.1\|WP_165629872.1\|2167469_2168561_-\|NAD(P)H-binding-protein	gnl\|CDD\|187556	cd05245, SDR_a2, atypical (a) SDRs, subgroup 2. This subgroup contains atypical SDRs, one member is identified as Escherichia coli protein ybjT, function unknown. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that generally matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	8.46539e-83
NZ_CP049836.1\|WP_058253125.1\|2183052_2183790_+\|hypothetical-protein	gnl\|CDD\|224495	COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only].	1.38218e-30
NZ_CP049836.1\|WP_068971554.1\|2166710_2167418_-\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|224185	COG1266, COG1266, Predicted metal-dependent membrane protease [General function prediction only].	0.000602041
NZ_CP049836.1\|WP_058252039.1\|2164650_2165151_-\|Asp23/Gls24-family-envelope-stress-response-protein	gnl\|CDD\|377129	pfam03780, Asp23, Asp23 family, cell envelope-related function. The alkaline shock protein Asp23 was identified as an alkaline shock protein that was expressed in a sigmaB-dependent manner in Staphylococcus aureus. Following an alkaline shock Asp23 accumulates in the soluble protein fraction of the S. aureus cell. Asp23 is one of the most abundant proteins in the cytosolic protein fraction of stationary S. aureus cells, with a copy-number of >25000 per cell. A second Asp23-family protein, AmaP, which is encoded within the asp23-operon, is required to localize Asp23 to the cell membrane. The overall function for the family is thus a cell envelope-related one in Gram-positive bacteria.	8.22469e-30
NZ_CP049836.1\|WP_068971690.1\|2179991_2180678_-\|HAD-hydrolase-like-protein	gnl\|CDD\|319798	cd04302, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to the Pseudomonas aeruginosa PA0065. 5'-nucleotidases dephosphorylate nucleoside 5'-monophosphates to nucleosides and inorganic phosphate. Purified Pseudomonas aeruginosa PA0065 displayed high activity toward 5'-UMP and 5'-IMP, significant activity against 5'-XMP and 5'-TMP, and low activity against 5'-CMP. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	4.71978e-80

>NZ_CP049836.1|WP_058253133.1|2171441_2172266_+|maleylpyruvate-isomerase-family-mycothiol-dependent-enzyme
MATTILPIDEVTEALIAQWGVIGELARALDDDAWSAPSVLPGWTNADIVAHIVGTESMLDGRDVEATRTVSALDHVRNPIGELNEKWVDHYRPKPRAEVVAALDEIIGVRTEALKAMSQNDFDAESMTPAGPDTYGRFMRIRIFDCWVHEIDLRDGTDRSAVAEPGPASFALDEIGASLPFVVGKRADAPKGSTVLFDITGVSPRTVRIAVGDRAGVVDEFDGGDDAADVRIRLDATNLARYAGGRRDADSSAVELHGDQVLGQAILSRMNYVI
>NZ_CP049836.1|WP_083229428.1|2169717_2171334_-|serine/threonine-protein-kinase
MRGVGPGERPGHPTLVRVSASVRAGDRLGPYLIDGLIGRGGMGEVYRATDTRKDRVVALKLLSPQVADDPAFRDRFHRESRVAARLNDPHVIPIHDWGEIEGRLFIDMRLVDGRDLRTLLLQDGPLPAERALRIVGQIGDALDAAHRSGLVHRDVKPDNILVDDRDFAYLVDFGLAQADTDTRFTSTGTAVGSFGYMAPERFGDDAVGPPADIYALACVLFECLAGVHPFASATTIERLIAAHLTAPPPRLGAAIDHVIARGMAKDPSQRQLSAAALVADAGGALRSEPLCGAPTIVPAGTPTVVPATPSASTPAAPAGPWDATRAAVWTTPPRRRSPLVPIVVATSVVLLICAGVVAWAIVTTERDNPATTAADASAVSTTTEAAPQPTTPTPAEPTPLPGPTLQPGPASQPGPAPRPSASPQPAIVPGDLGLTVPMTRPACDGTGIVVVANATAPGNYPGEVQSYLNQYPGASYLRTDQSCPSLKQVSDDGTPIYAVYYVAGRTLEDICTMRNQIGGLAYGRWLDYTTDPESQITC
>NZ_CP049836.1|WP_068971556.1|2168663_2169647_-|YafY-family-transcriptional-regulator
MLETSARLLALLSLLQTRREWSGPELAERLDITTRTVRRDIDKLRELGYPVDANVGSRGGYRLGAGAEMPPLLLDDQEVLAVALGLDAVTTGAVADMAEASAGALAKLRQVMPSRLRHRLDALRIEAVPRTAPASAVSADRLTEIATACHRNERLRFDYRRNDGEESRREIEPYRLVRNGNRWYLVGFDIQRGAWRSYRVDRMEPKVPTGPRFTPREPPEGGAAAFVLRGLGSVYRRVTARVRIHASLDAVSAMVHESWGALESGDEHSCEITLYSTSLAEIARWLYAFGADFTVIEPVELRAELVAAAEYHDRVAERYRRAVVAQP
>NZ_CP049836.1|WP_165629872.1|2167469_2168561_-|NAD(P)H-binding-protein
MRLLITGATGYVGSRLVCALLKQGHDVVVTSRDTRKLAKFGWSDQVSMVTMDADDPASVRSAMSDAGQIDAIYYLVHAIGQADFANGDRDAARNVAEAARDAGVGRIIYLGGFVPSDDKLSTHLQSRADVADGLVVDGGPELVWLRAAVVIGAGSTSFEIIRYMADRLPVIPEPDWITNEMDPISIRDAVHYLAAACDSSVLPAGNYDISGPDSARYISILHEYVSAIRMPRLRLPVFGISTRLAGRVGGMLVPVPASLTEELVTSLDHPMTASEHRIRDLVPPPAGGLTPMREAVHASVRSPYPRSVCDLDDLHHLADTDPAWAGGDWLRVKRSVVETIGTSLGVATKVVGVLRPSRADVAS
>NZ_CP049836.1|WP_068971554.1|2166710_2167418_-|CPBP-family-intramembrane-metalloprotease
MLVTSLARDLYDSVAADRDPDPGAHYIRRRWLVGVFLVIGAVVLGISLRVEPGDAAFYPLTIGLAAVWIVGAFVSGPLRLGAFSPTPSRPPDRIGAIGLGVVVGLAVGGAFVVGGLAARMIPGVSDLANQVLAFADFGSLAVVTAITMLNGLAEELFFRGSVYSAARPHNPILVSTVIYVLVTMASGNVMLGFAGAVLGTVCAILRRSTAGVLAPAITHVIWGAVMVLALPPVFA
>NZ_CP049836.1|WP_068971535.1|2165930_2166410_+|hypothetical-protein
MPDKHGRDFEATDVADAWLVEATQQIAADEPIGDVDRLITSISGSLQRIRRPARTLATDELRVNTSDRVVKQLIAVRTRRELGRLTVFASVDGTGDTVDGVRVGLIARYADDLTALSDEVRDIVDDVLIDTLGTESSAAARRNISVRWQDVYTREWLSR
>NZ_CP049836.1|WP_165629871.1|2165275_2165938_+|sigma-70-family-RNA-polymerase-sigma-factor
MNIGDSAHREPPDLVGLDLSELGDDELAGAAAVGDTEAFDVLVRRVTPGLLRYMLRMVDGQQTAEDLTQETLLDAWKGLPDFAFRSSFRTWMFAIAHRKAVDYHRRRRDVPFDDERFAELEAAGPLPSDIAERSLLMDALRAELDNLPANSRAAWWLKEVEGLTLEEIGQVLRITTGSVRGHLQRSRKFLLTRLAPWNPGKPRITPTETVDDAEGGEVGA
>NZ_CP049836.1|WP_058252039.1|2164650_2165151_-|Asp23/Gls24-family-envelope-stress-response-protein
MSASATTTKDATKDDATTVDATRTDGAAGRALARRDPSGDRGRTSIADIVVAKVAGIAAREIDGVHDLGGTTERVVGRVRDVLPGTTVSTTQGIEVEVGERQAAVDVSIVAEYGVAIHQLAAAIRRNVVSAIEQMTGLEVTEVNITVHDIAFGDDEQESNTTPRVQ
>NZ_CP049836.1|WP_058252040.1|2164312_2164651_-|hypothetical-protein
MTSDLPAARTDDGGPLAERLATAVLAVPGVRDLHSGLFGEIATYLPGRRVPGVSLADDHGEVHIVVDAAYDLHGTAARVRDVTEELAARPVTVTVADISVSSKPTPKDGEAQ
>NZ_CP049836.1|WP_058252041.1|2164136_2164316_-|hypothetical-protein
MNNAIVGLFVGLLLALAAVAGGLAGFLLAIVLGAAGLVLGLNRDGTIDLGALLRSRGRG
>NZ_CP049836.1|WP_058253131.1|2175242_2176052_-|spermidine-synthase
MARTTAHPTPGRYDIDTGVAELSPDTIAGGWLLTINGAHSSHIHPDDPTALDFDYLRQMAAVIDERHPTTDRLRVLHLGGAACALARHLDHRYPDARQVAVEIDAELARLVREWFDLPRAPKLRIRVGDARQVVESLQPGTREVVVRDAFAGDRTPRHLTTREFTERVRDVLVPGGLYLANCGDSRDLAGARAEAATVGSVFDHLALIADAAMFKGRRTGNIVIAGSDTPLDPSASLVRTLLSDPLPAQILSGDRAREFARGEALTDEP
>NZ_CP049836.1|WP_137808466.1|2176174_2177179_+|cobalamin-biosynthesis-protein
MPRPSRFRSPHPDRRRGDVTAAGLVAGFVLDELFGDPSRGHPVAGFGRLTGAVERRMYRDSRAAGVGLVGVMVGSTVALAALPGRRSAGVVDVAVTAASTWVALGGTSLCRVGDAVAQALEAEDLEGARALIPSLCGRDPESLDEAGLCRAALESIAENTSDATVGPLVWGALAGVPGVLGYRAVNTLDAMVGYRSERYRNFGWAAARLDDLVNLLPARLAGSLLVVIGGAPRRTIAAWRRDSSAHPSPNAGVVEAGFAGALGVQLGGRTVYPYGVEMRPTLGSGPAPGPADLRAAVALSRRVQRATVLTCAVVAVVRPGVGAAARRLSRRIAG
>NZ_CP049836.1|WP_058253147.1|2177156_2178092_-|hypothetical-protein
MVAAFAVACFTLLAPWQLGKNSDTERRNDLIRTATSIETAPLAEVAPSSTFVPSSEWRSVAVTGRYLTDRQALVRLRNVDQRPAVEVLTPFAVSGSDRVILVNRGFVRPVEGAVPDIPAPPVGEQTVDGRIRAAESVSTDRGTRVENGALTVATINPGLVSAATSTPMDDFYLQLSPDQPGSLGEIPLPQLDTGPYLSYGLQWLAFGVMAPLGVGYFLYSEIRARRRAAAAATETSATAAAGTAVDQPSDPVAAATTTVESRSQRRQHRREELRAAAGTTVTQQVGDIGHGPRAGDESGDVRDKLTRRYGG
>NZ_CP049836.1|WP_058253129.1|2178180_2179185_+|hypothetical-protein
MRDFLCLKCGQRLSFENSLCLNCRSPLGFWLKTRTIHVLDDQARVEVDGVLLERCANTKVAQCNWLVKWSGKPTMCESCRLTRTRPGDDDPEALVIFGQTETAKRRLILELDELGLPIETREENPESGLAFDLLSSAKQSVITGHANGVITLDLAEGDDVHREQMRVELAEPYRTVLGHFRHEIGHYYQLVLITDERRAGFEELFGNPDDDYQAALDRHYSEGAPEGWRQDFVSSYATMHPAEDFAETFAHYLHIRDTLDTAAAFAMAPAGTTFDGVPPGDVGFDRVIDEWLPLTWALNQINRSMGHPDLYPFVLPETVLTKIRFVHNLIAPAA
>NZ_CP049836.1|WP_068971674.1|2179461_2179941_-|low-molecular-weight-phosphotyrosine-protein-phosphatase
MSDELHICFVCTGNICRSPMAQNIFRTALDDAGLGGKVRVSSCGTSGYHIGEPADNRARTELVAHGYSDAHVAALIGPEHFEADLLLAMDEGHVRELERKRLGDRTRLLRSFDPSAPADDLDLADPYYGTPDDFVVTREQIEGSMPGLIDWVRAEIGVS
>NZ_CP049836.1|WP_068971690.1|2179991_2180678_-|HAD-hydrolase-like-protein
MTTTPDPRHPETVLLVDLDGTVTDSFAGIENSFRHALAVVGAPEPDPRIVAGIAGPPMIDTLNALGLSPETADKAMRAYRERYTEVGWLENSVFDGMAELLADLAAGGRTLAIATSKNQTTARRILEHFDLAGHFRYIAGASDDGTRREKADVITSALAELGLPTDPQTGHVTTPVVMIGDRSHDVLGAAEFGISAILVRWGYALGGEDQGATWVVESVAELRDVLGA
>NZ_CP049836.1|WP_068971675.1|2180708_2181851_+|threonine-phosphate-decarboxylase
MTVGYDALDVETGPAGTPPPRADLTDPERHGDQDATPGLVDFAVNVRGTPPAFVLDAIRSGLDDLARYPTGAQERRAVDAIAAAHGRRPEEVLLLSGAADGFEMLPRLGVRHAALIQPSFTEPEVVLRAAGIPITQVALAAPWELPGPGDSGTAVPDDADLVILGNPTNPTSVLHPVEAIAALRRPGRILVVDEAFADLTLGADGSLEPQSLASVDWPDLLVIRSVTKTFGLAGLRAGYLLGPVDLLDRLRAGRRPWAVSTPALAALTACVEQQGQRYCAAVARRVADERSEMVAELTRIGLRVAAEPAAPFLLVEMAHATEVKQRLIRHGFAVRSCANFVGLGDSHLRLAVRALPQVRALTRAIELVREEIDSGTGERV
>NZ_CP049836.1|WP_137808542.1|2181858_2182971_+|Nif3-like-dinuclear-metal-center-hexameric-protein
MTVGDVVDVVERAYPPALAESWDAVGLVCGDRADPARGVLVCVDVTDAVVDAAVAAGAGIIVAHHPLLLRGVTTVAADTPKGRIVHRLIRNGIALLCAHTNADSARPGVSDALADRLGLRGTVPIDPKPVAAMDKWVVMVPEGNVEQVSEAMFAAGAGAIGDYRDCSWTVVGTGQFEAGEDASPTIGEIGMRTHVDEARVEMVASRGLRAGVLRALRDAHPYEEPAFDVFELADLGSDVGLGRVGSLTEPMTLRDFVAEAARVLRTPAGVRAAGDPDALVRTVAVCGGAGDSLLGRVRGLGVDVYLTGDLRHHPVDESLRDGGPALVDAGHWATEFPWCAQVDALLEAELGTPVSVFEAPTDPFALHSAG
>NZ_CP049836.1|WP_058253125.1|2183052_2183790_+|hypothetical-protein
MKVDAAVQRLLLDLADSDAEINRLVHRRKTLPEDAEIAEHNSAIDAARDDLVRAEIAAEDLGREYRRIDSEVTGMANREAKDSALLTAGGLAPKALSELQHELAGLGRRRAVLEDEMLSLMEQQEAVESERTRAAATISHLEEKVAEAQVRRDKSLETIDEDLSRARERRETLEAEIDAPLLAMYDKQRAGGRIGAGLLRARRCGACRMELDRGTIATIAAAQSDEVIRCEECGAILVRTAESGI
>NZ_CP049836.1|WP_065630070.1|2183794_2184487_+|phosphoglycerate-kinase
MTATAEESVPEGDSATKAPSWQGRRSDPTRLILLRHGQTPLSVERRYSGRGNPDLTDEGRRQARAAAARVVREEGIAAIVTSPLRRARSTAEEVAALTGIDVVEHPGLIENDFGDWEGLTFTEASQRDPDLHRAWLSDITVPAPGGESFAQVAERISRTKAELLERYPGQTVVLVSHVTPIKTLLQDALGVGPELLFRLHLDLASVSIAEYFDDGGSVVRLVNDAAHWRV

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Crispr_ID: NZ_CP049836_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049836_4

2861001-2861098

Orphan

Consensus_repeat	Method
GGGAGCGAAGCGAGCGGGCCGAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP049836_4

>merge|NZ_CP049836|4|2861001-2861098|CRISPRCasFinder
GGGAGCGAAGCGAGCGGGCCGAATTGATGCCGGCGCCGGGAGCGAAGCGAGCGGGCCGAATTGATGCCGGCGCCGGGAGCGAAGCGAGCGGGCCGAAT

>NZ_CP049836|4|4|2861001-2861098|CRISPRCasFinder
GGGAGCGAAGCGAGCGGGCCGAAT	TGATGCCGGCGCCGGGAGCGAAGCGAGCGGGCCGAATTGATGCCGGCGCC
GGGAGCGAAGCGAGCGGGCCGAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049836.1\|WP_137810617.1\|2865114_2865840_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223021
NZ_CP049836.1\|WP_068971429.1\|2866929_2868540_-\|long-chain-fatty-acid--CoA-ligase	unknown	unknown	gnl\|CDD\|169098
NZ_CP049836.1\|WP_058250515.1\|2861164_2861761_+\|sulfite-oxidase-like-oxidoreductase	unknown	unknown	gnl\|CDD\|239027
NZ_CP049836.1\|WP_065630031.1\|2848604_2850071_-\|sugar-porter-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340917
NZ_CP049836.1\|WP_004018570.1\|2859008_2859212_+\|DUF2945-domain-containing-protein	unknown	unknown	gnl\|CDD\|378576
NZ_CP049836.1\|WP_058250516.1\|2859642_2860986_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049836.1\|WP_137810622.1\|2857945_2858911_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP049836.1\|WP_165630032.1\|2856351_2857941_-\|multidrug-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226089
NZ_CP049836.1\|WP_137810620.1\|2861757_2862474_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|99813
NZ_CP049836.1\|WP_165630033.1\|2863939_2865058_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224172
NZ_CP049836.1\|WP_137810621.1\|2859286_2859646_+\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|163261
NZ_CP049836.1\|WP_165630836.1\|2850293_2852756_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NZ_CP049836.1\|WP_137810619.1\|2863010_2863943_+\|DUF1295-domain-containing-protein	unknown	unknown	gnl\|CDD\|226275
NZ_CP049836.1\|WP_165630031.1\|2855225_2856086_+\|LLM-class-F420-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274681
NZ_CP049836.1\|WP_165630035.1\|2868729_2869965_-\|RNA-polymerase-subunit-sigma-70	unknown	unknown	gnl\|CDD\|227277
NZ_CP049836.1\|WP_065630007.1\|2869961_2870339_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226318
NZ_CP049836.1\|WP_165630837.1\|2854307_2855171_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049836.1\|WP_058250513.1\|2862534_2863011_+\|glutathione-peroxidase	unknown	unknown	gnl\|CDD\|238207
NZ_CP049836.1\|WP_165630034.1\|2865844_2866645_+\|crotonase/enoyl-CoA-hydratase-family-protein	unknown	unknown	gnl\|CDD\|181008
NZ_CP049836.1\|WP_165630030.1\|2852985_2854179_+\|3-oxoacyl-ACP-synthase	unknown	unknown	gnl\|CDD\|238430

Protein	Function_ID	Function_description	E-value
NZ_CP049836.1\|WP_137810617.1\|2865114_2865840_+\|hypothetical-protein	gnl\|CDD\|223021	PHA03247, PHA03247, large tegument protein UL36; Provisional.	0.000996635
NZ_CP049836.1\|WP_068971429.1\|2866929_2868540_-\|long-chain-fatty-acid--CoA-ligase	gnl\|CDD\|169098	PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated.	0
NZ_CP049836.1\|WP_058250515.1\|2861164_2861761_+\|sulfite-oxidase-like-oxidoreductase	gnl\|CDD\|239027	cd02109, arch_bact_SO_family_Moco, bacterial and archael members of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. The specific function of this subgroup is unknown.	6.68627e-92
NZ_CP049836.1\|WP_065630031.1\|2848604_2850071_-\|sugar-porter-family-MFS-transporter	gnl\|CDD\|340917	cd17359, MFS_XylE_like, D-xylose-proton symporter and similar transporters of the Major Facilitator Superfamily. This subfamily includes bacterial transporters such as D-xylose-proton symporter (XylE or XylT), arabinose-proton symporter (AraE), galactose-proton symporter (GalP), major myo-inositol transporter IolT, glucose transport protein, putative metabolite transport proteins YfiG, YncC, and YwtG, and similar proteins. The symporters XylE, AraE, and GalP facilitate the uptake of D-xylose, arabinose, and galactose, respectively, across the boundary membrane with the concomitant transport of protons into the cell. IolT is involved in polyol metabolism and myo-inositol degradation into acetyl-CoA. The XylE-like subfamily belongs to the Glucose transporter -like (GLUT-like) family of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.9727e-147
NZ_CP049836.1\|WP_058250513.1\|2862534_2863011_+\|glutathione-peroxidase	gnl\|CDD\|238207	cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.	2.05141e-101
NZ_CP049836.1\|WP_004018570.1\|2859008_2859212_+\|DUF2945-domain-containing-protein	gnl\|CDD\|378576	pfam11160, DUF2945, Protein of unknown function (DUF2945). This family of proteins has no known function.	2.58649e-16
NZ_CP049836.1\|WP_137810622.1\|2857945_2858911_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	9.68125e-85
NZ_CP049836.1\|WP_165630032.1\|2856351_2857941_-\|multidrug-ABC-transporter-permease	gnl\|CDD\|226089	COG3559, TnrB3, Putative exporter of polyketide antibiotics [Cell envelope biogenesis, outer membrane].	1.77197e-82
NZ_CP049836.1\|WP_137810620.1\|2861757_2862474_+\|oxidoreductase	gnl\|CDD\|99813	cd06217, FNR_iron_sulfur_binding_3, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.	5.02231e-81
NZ_CP049836.1\|WP_165630033.1\|2863939_2865058_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|224172	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion].	6.03619e-26
NZ_CP049836.1\|WP_137810621.1\|2859286_2859646_+\|PadR-family-transcriptional-regulator	gnl\|CDD\|163261	TIGR03433, padR_acidobact, transcriptional regulator, Acidobacterial, PadR-family. Members of this protein family are putative transcriptional regulators of the PadR family, as found in species of the Acidobacteria. This family of proteins has expanded greatly in this lineage, and where it regularly is found in the vicinity of a putative transporter protein [Regulatory functions, DNA interactions].	1.1054e-25
NZ_CP049836.1\|WP_165630836.1\|2850293_2852756_-\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	5.52068e-85
NZ_CP049836.1\|WP_137810619.1\|2863010_2863943_+\|DUF1295-domain-containing-protein	gnl\|CDD\|226275	COG3752, COG3752, Steroid 5-alpha reductase family enzyme [General function prediction only].	3.96005e-33
NZ_CP049836.1\|WP_165630031.1\|2855225_2856086_+\|LLM-class-F420-dependent-oxidoreductase	gnl\|CDD\|274681	TIGR03620, F420_MSMEG_4141, probable F420-dependent oxidoreductase, MSMEG_4141 family. Members of this protein family, related to F420-dependent oxidoreductases within the larger family of a bacterial luciferase (an FMN-dependent enzyme), occurs only within the small subset of species that synthesize F420. Most such proteins are from members of the Actinobacteria, but at least one species, Sphingomonas wittichii, belongs to the Alphaproteobacteria. [Unknown function, Enzymes of unknown specificity].	7.13066e-118
NZ_CP049836.1\|WP_165630035.1\|2868729_2869965_-\|RNA-polymerase-subunit-sigma-70	gnl\|CDD\|227277	COG4941, COG4941, Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription].	2.35874e-95
NZ_CP049836.1\|WP_065630007.1\|2869961_2870339_-\|hypothetical-protein	gnl\|CDD\|226318	COG3795, COG3795, Uncharacterized protein conserved in bacteria [Function unknown].	1.89665e-31
NZ_CP049836.1\|WP_165630034.1\|2865844_2866645_+\|crotonase/enoyl-CoA-hydratase-family-protein	gnl\|CDD\|181008	PRK07509, PRK07509, crotonase/enoyl-CoA hydratase family protein.	1.54822e-123
NZ_CP049836.1\|WP_165630030.1\|2852985_2854179_+\|3-oxoacyl-ACP-synthase	gnl\|CDD\|238430	cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP.	2.5517e-63

>NZ_CP049836.1|WP_058250516.1|2859642_2860986_+|hypothetical-protein
MTAETELESQIDRWRGYVLRHQAIATTDADEMEDHLRGQIADLAAGGLDDDEAFLVAVKRMGRVDALSREFAREHSDRLWKQLVLTAEPSGDLGRRRHELGVVIGLVVAAATTVRVAVEVMPEWVLVRNAALLVLPFMALYFGWKRRVSTRTALTVIGAFVVTGIVVNVYPFVDDGTTQAIVAIHAPIVLWFLMGVTYVGGRWTSGPRRMDFIRFTGEWVVYATLLGLGAGVLTGLTAGAFGALDIDVDTVISQWLAPIAAPGIVLLAAWLVEAKQSVVENIAPVLTKVFTPVTAVMLVVLLIAMVTSGDVVDVDRELLILVDLILVVVLGLLLYAISARDPHLRPELFDRLQLILVVTALAVDAVMLTIMASRIAEFGFTANKTVALGLNLVLLVNLSWAAYLLFGFVRRRRGFDATERWQTDYLPVFALWAAAVVVVVPMLFDFA
>NZ_CP049836.1|WP_137810621.1|2859286_2859646_+|PadR-family-transcriptional-regulator
MYIEKDLVAASATPLVLGILAEGESYGYAILKRVREMSGGRMEWTDGMLYPLLHRLERAGHVEASWGAADTGRRRKHYSITASGLAALAERRSQWEVVADALDQVWRTVALPPTAEGLA
>NZ_CP049836.1|WP_004018570.1|2859008_2859212_+|DUF2945-domain-containing-protein
MAIKKNDTVRWNTSQGETEGTAEEKRTKEFTFEGQKFKASEDEPYWIVKSSKTGSKAAHKESSLSKK
>NZ_CP049836.1|WP_137810622.1|2857945_2858911_-|ABC-transporter-ATP-binding-protein
MSVERSENPQRTEPAIDVRGLRKSFGRFEALRGLDLEVLRGEVHGFLGPNGAGKSTTIRVLLGLLRADGGEVRLLGGDPWRDVVELHRRLAYVPGDVALWPTMTGGEMIDLLGSMRGGLDEGRRADLVSRFELDTSKRGRQYSKGNRQKVAIVAALASDVELLILDEPTSGLDPLMENVFQEVVGEATARGTTVLLSSHILAEAETLADRLSIIRDGAVVATGSLAELRGHTRTSVRAELDSAPSPDLLAQLHNAEVHDIDSHDHDSGGLRLSATVDSDQIGPVMSALTGCGLRSLTVEPPSLESLFLSLYEKNDMSAGGR
>NZ_CP049836.1|WP_165630032.1|2856351_2857941_-|multidrug-ABC-transporter-permease
MTASTIGTAPLLRASLHHEGRSFAPWIVLPTALAVSSVIAYPLLFPDAAERAAFATTIGSNPALGLIFGPAYDLATVDGFVAWRSLALGGFIAALGAIFIVVKAARGQEDSGQAELLAAGVLGRAARLSTALIMAGVCSIAIGILAGLATSLCGGAWGSSFLLGAGFTVTGWMFGAIAAVSAQVGSDARAATTIAVSLLGVLFVLRGFLFSVDAPTWTTWVNPLGWIQETRPATGDHWWPLLIGVAFAVVVGAAAFALQRARDFGQGLIPARPGPARGRIGSPLALAIRLNRAPIVAWSIAFVGLGVIFGYFTRSVRGLLTANPAMAQIFASGAASPADLVSAFVTTILGLVGIIASVAGVQIVNRIRTEELDDRAEAVLATGVSRPRYFGAVTGVALVVPAALVTIAGLVVGVFASTADLGLGFGDVFLQSIATIPAVWAVVGIAVAVIGARPRVRPAIWLGVLVSFVLTILGPSFKLPDWALGFSPFHHVPNVSAAQPDWWGLVWVGVVVVLLVAVGFAGFRRRDIP
>NZ_CP049836.1|WP_165630031.1|2855225_2856086_+|LLM-class-F420-dependent-oxidoreductase
MKLDGVGIWSSPLRYGDTGEAAEAAAELDDLGFTALWIPDVGGPVLDSVENLLGATRKAVVATGILNMWMHEPHDVAAAHARLTEQFGPRFLLGLGISHAPLIDAKEAGRYQKPLATTKAFLDGLDDAPQPVPADARVLAALGPKMLQLSADRTAGAHPYLVTPDHTKVAREALGDGPLLAPEQTAIFAADRDEARAVGTKWLKGYLAMPNYANNLRRLGFSEDDLSSVSDRLFDALIVWGDDAAILKRIDEHRSAGADHVCVQVLQADHRGFPREQWRRLAAALG
>NZ_CP049836.1|WP_165630837.1|2854307_2855171_+|hypothetical-protein
MGDSTRTDPPPTSGARHALTLFLNSPFAGMSPWILMALLAGPGRFEEAAASAFALSLLLVIGGPKRGTSVKLLEVFDVTYFGTMAIIALFASDHVIDWLERWGGEMTNIALVSFALGSILVRQPFTLQYARETTEKEFWDSPLFIHINYVITWAWVVGFGVAAISGAFGDLVLDDPNNFWTGWIIQIGGTIFAIAFTEFYPDYATYRAAVREGWATDEKPESIMHLFGWVPIYVLAIGISGLVTDSLGTVAGVVLIVAGVVAINVFKRMTAAMDARLEATAGRPTQS
>NZ_CP049836.1|WP_165630030.1|2852985_2854179_+|3-oxoacyl-ACP-synthase
MTIQRSTISGLGAVTGYGWGRDALWSGLVSGKSAAALHQGFGFTGGQTTGAEASDDTAEPGWIVRVPEGGQQSDGRTRFSRAMRAAAREAIEDAMARGWTPGSRVGLVHACVLGDLDMYPIVTSGVGQYTGRQYLSVTPSTPVSLLMQEYGFHGPAITVSAMCTSGSAAIVTAKSWLDSDLVDDVVVVATDLSARPEVVAMFVQLGVAITDTDALNACRPFQEGSRGFTFGEAAIAFTMTNRAANGYADVLGGSMSHDAFHVTSIDPELTGVRSCVEQTLTMAGVDGGSIRYLNAHGPGTRQCDRAEATIAEQMVPNAEVFSVKPLAGHCQGAAGAVELAASLLGYERGEIPASPRVAEAIIPQLLDGRTDLVSGLTLKTSLGMGGHNAAVVLAPNA
>NZ_CP049836.1|WP_165630836.1|2850293_2852756_-|EAL-domain-containing-protein
MGRPRADGDDRPGLVAPDAEPMARPSDAAVAERYRLLLELSPDAIAVHQDGLIVYVNSAALAFARVDERDAMLGRSIADFVHPDELPQMLDRIIGMGEEAGASTVPEEVVMVDAHGVTRPMEVTSVRTVWQDKPAYQVILRDITAQKAIESALRRQAALLDHVSNAVIAVDNHMTVTSWNPAAEQMYGLRASEAIGQNIDDVVGAHVDPHAAVALGGTVDQLHRRSDNGRSFLAHTSITTMDDGFLIVAEPTRRPLIERLGTILAALHQAVIVVREDGHIELANPAAGTMMGSGASPGASVHELPLDFIAGESPIAQCLRTGEAVTDATATITTPLGERWLSCSCRPIDDDGAEVVALVSFVDITDRYRETSQLAWEAVHDPLTGLYNRSGIIRELESHMARLDEEENACCVAIFYIDLDNFKLVNDSLGHAVGDEVLHAVAQGLATATPEEAAVGRIGGDEFVLVATLGIACSAEEIEQQIDKIRGAVYEPIAVSIRSEPLKVEASIGVATVKAGDEYTATDLLRDADIALYQARKASRARYVRFETQHREELQRRQRIEEELRRVLDTDTGQLEIHYQPIVSTGDGTLVGLESLLRWRHPELGSISPTEFIPLAEGSNLIDRVGNYVLETAAAEVAAVPELRRVMLCINVSRRELTNGQFPTRLRDTMARSGMDPAAFCLEITESALDPLDGDLLTLLGEVRDLGTQVSLDDFGTGASSLSEFYRLPVSVLKTAKSFVDALDEHPSAKSILAGIVTMAHAAGMRVVAEGVETESQAATVAEVGCDLAQGYHFGRPAPLADVIGSGVRIRANPGVWETG
>NZ_CP049836.1|WP_065630031.1|2848604_2850071_-|sugar-porter-family-MFS-transporter
MTDAERQVAEQHTAKVIGVTVAAAVGGFLFGFDSSVVNGAVDSIEADFGLGKLMTGFAVAIALLGCALGAWFAGRLADVWGRKRVMLLGSALFIINSIGTGFTQTIPDLLLWRVLGGIGIGIASVIAPAYIAEIAPARFRGALGSLQQLAITMGIFAALLSDALLADSAGGASNDFWWGLEAWRWMFLVGVVPAVVYGVLALLIPESPRYLVGRNRDAEAARILQEVTGEENPLERVKEIKLTVKREAKSSIRDIAGPSFGLHPLVWVGIWLAVFQQFVGINAIFYYSTTLWQSVGFSEADSFKTSVITAVINVVMTFVAILFVDRIGRRKLLLGGSVGMFIGLLMACIAFTQQIGEGENITLPDPWGVVALIGANLFVVAFAATWGPVMWVMLGEMFPNRIRGVALGVCTAVNWVANFTISMLFPPMTEAVGLGIIYGFFAFCAAASFFYVLRKVEETKGMELEQMDSVAEARLSQFTAVRAAKDKA
>NZ_CP049836.1|WP_058250515.1|2861164_2861761_+|sulfite-oxidase-like-oxidoreductase
MAIVNRGFVGRRDRDARRLPPGQYTTLDFPVLSAEPTPAIVPNDWMLAVQSADHRAATFTWDQFQELPHDDITTDIHCVTRWSKFDTRWRGVSFDTLLQALPWEPAPFVMAHCHGGYTTNVPLADLVDGRGWIADTYDGEPLSAEHGGPARLLVPHLYFWKSAKWVRRLRFMAEDAPGFWEERGYHMYGDPWREQRYS
>NZ_CP049836.1|WP_137810620.1|2861757_2862474_+|oxidoreductase
MTTWHLTTVTAVVDLTPTARALRLALPEAVHALPGQHVDIRLTAEDGYSTARAYSLSDVRETRSIEVTVERLEDGEVSPYLVDMVEVGDPLEISDPHGYWFTWPSGDDRPVQLIGGGSGIAPLMSMIRSREVEAPQTPFSLVYSVRSPERVYYRDEIRQLIAHRRMDVHLIHTRVAPDDAPRPAGRVTADELAALTMDPATSPTVFICGPNRFVENCAQWMVEAGHDRTRIRTERFGE
>NZ_CP049836.1|WP_058250513.1|2862534_2863011_+|glutathione-peroxidase
MTSVYDFTATGIDGDPVELSQFQGSPLLIVNTASQCGFTPQYRGLEALHRDYADKGLRVLGFPCDQFGHQEPGDEEEIKNFCSLTYDVTFPMFAKVDVNGPDAHPLFAWLRDQKSGVLGGRIKWNFTKFLIGRDGSVVARYSPTTKPEKLAGSIEEQL
>NZ_CP049836.1|WP_137810619.1|2863010_2863943_+|DUF1295-domain-containing-protein
MGTPVSTDGTISRSGSFVRVTIAYVLAFAVAAAWLVWGPATAYLWIDTLIADLLATLVIFAFSRFYGNSSFYDAYWSVVPPALFIYWWAAGDVGIDAVHCWVIAIVIGAWAIRLTANWAIGWPGLHHEDWRYPMLKAGAGRAELPVDLMAIHVFPTIQVFLGMIPIYVAVTHTGGVLAWLTAVAAVVGLAATALEYVADGQLRRFAAHRTPGAVLDTGVWAWSRHPNYFGEVLFWVSMALFGLAASPGDWWWLFVGAVLMLAMFLGASIPMMEKRSFERRPGYQDVIDRVPRFVPRPPRSAAHPPDQVTA
>NZ_CP049836.1|WP_165630033.1|2863939_2865058_+|FAD-dependent-oxidoreductase
MSRPRVVVAGLGDSGVLTAIHLAPHADVVGISSKPGLVSGQELGLRISRPDAWARDYRIPFGRFRKLDGIRTVHGTLTGADLGDRTVTVADANGTERVERFDALVISTGVRNGFWRHPELQSEADVDAELRSAHARFADAETIAVIGGGAAAVSAAANLAQTWPGKQVDLYHPGERALPQHHPRTWATVLARLRRLGVGVHGGHRAVVPDGFGCDEITPGPVNFSTGQSPVEADAVLWAIGRVRPNTEWLPREVLDPSGFVRVTAELRVPGADLVYAIGDVAATDDLRSSARNRADRLLAHNIRSDLTGRPGRARRYAPPRRRWGSVLGVQADGLQVFAPNGRPFRFPAWSVDTILQPWIVRRGIYGGIRKR
>NZ_CP049836.1|WP_137810617.1|2865114_2865840_+|hypothetical-protein
MSNEPFSANPSGQPPTPGGPGQTPSGAYPSGAVPPAAPPPEASQYSAGTTPGVAPTDSTADGTTPVKPTAAERANSVVKKVVIGLVIAALLVVTYFILEAFLPRWWAGQIGQRVEGSFSRGIGTGLVLGIVCTFLPVLFFTLAFVNRSRMKNVPTIMFAVLGVLVAIPNLLTLTVVAGGGNGAHAGERIFDVEAPGFRAATAWGVIIGVVLAIGVGYFIWRYQRRGRQLREIKHPPTTDRK
>NZ_CP049836.1|WP_165630034.1|2865844_2866645_+|crotonase/enoyl-CoA-hydratase-family-protein
MTEQRIVVDIDDAGVATATLNRAVKHNALDPAMFEALIDVTGTLAEDNRVRAVVVHGAGKSFCSGLDVSSLGQGGGVNSLLEREPGVLGNHAQRVSLDWGRIPAPVIAAITGNCFGGGLQIALGADIRYSTPDARLSIMEVKWGLVPDMGITQTLPRLVSADVAKELTFTGRIVDGAEAQRLGLVTRVVDDPLTAALDLAHEIASKSPHAVRAAKRLYDESWAGTDPAAALMLESELQVGLMGSPNQMEAVHAGMARREARFADPE
>NZ_CP049836.1|WP_068971429.1|2866929_2868540_-|long-chain-fatty-acid--CoA-ligase
MTASAEVTNDLTTEPYRSRRNHWNNQVRRHAMMTPDNTAITYLDKNTTWKELDDRSRAFGAALHRRGVQFGDRVLMALLNRTEYIEAILGATLIGAIPVPVNIRMSPAEVAYLVTDSGAKVVVTETLLAPIADAVAGSTGQIETIIVVDGSDNADHLDFETLLAEGASDLPEVDVPEDTVAAIMYTSGTTGKPKGAMLTHQNIQAQAVTTIATAGAQSGSDDVASIVPPLFHIAGIGGFAPIFYRGIRAVLHPLGAFDPDTMLDTLEREGVTSVFMVPAQWQAVCAAQKARPRKLKLRTMSWGAAPASDTVLNAMNESFPEAANMTAFGQTEMSPVTTILEGKDALRKLGSIGKVVPAVTARIVDPLMNDVKPGEVGEIVYRGPNMMIGYWNKPEATAEAFRGGWFHSGDLVRQDEEGFLYVVDRAKDMIISGGENIYCAEVENVLFSHPSITEAAIIGRADEKWGEVPVAVVVLAEGVEDLTLADLEPHLNENLARFKHPKDLVIIDELPRNAGGKVVKPRLRDAYGSKDAGLSN
>NZ_CP049836.1|WP_165630035.1|2868729_2869965_-|RNA-polymerase-subunit-sigma-70
MTRREAHTAAEHAARESYSRLVALLAAASGDLALAEDALATAFERALTSWPSDGVPANPEGWLLTVARNQQRDVWKSAAHRTSKILDDTISPGATTVTPFDDVDPDAIPDKRLELLFTCAHPAIDAAARTPLMLQSVLGFEAADIATAFAVAPATMSQRLVRAKRRIRDARIPFVVPDRAAMPERLPAVLEAVYGCFAIAWHDADGTDPDTVESMAGESLHLAVTLAALLDDPEAWGLAALIALSLSRAPARTGPFVPLEEQDPAGWDTALIRDGEAMLRRASTYGRPHGRFQLEAAMQSVHADRARTGVVDWAALQSLSSALVSVASTLGARIAHAAIVGRASSPADGLSLLDELGGDAAGFGPFHAVKADLLVRAGHSDVAREHFERAAELTGDERARGYLRRRAGKVG
>NZ_CP049836.1|WP_065630007.1|2869961_2870339_-|hypothetical-protein
MHYSLLLHYPEMDASTLGEEAIAQGQAAFAAYTTALQDAGVLVSAEVLQHSDVTTTLRKVDGRLVVQDGPFADTKEQLGGTVVIDVDDLDAAIEWARQAPPIEWGVVEIRPGATYTVDGAWTPNA

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Crispr_ID: NZ_CP049836_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049836_5

3584449-3584643

Orphan

Consensus_repeat	Method
GTCGCGGTTCTGGCCCCCGTCACG	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_CP049836_5

>merge|NZ_CP049836|5|3584449-3584643|CRISPRCasFinder
GTCGCGATTCTGGCCGCGACGACGCTCACGGAACCGGCGACCCCGACGGCGACCGCCGCCCTCGCCGTCGTCGTCCTGACCACCGTCGCGGTTCTGGCCCCCGTCACGGTTCTGATTTCCGTCGCGGTTCTGGTTGCCGTCGCGGTTCTGCTTGTCGCGGTTCTGGCCCCCGTCGCGATTCTGGCCCCCGTCGCG

>NZ_CP049836|5|5|3584449-3584643|CRISPRCasFinder
GTCGCGATTCTGGCCGCGACGACG	CTCACGGAACCGGCGACCCCGACGGCGACCGCCGCCCTCGCC
GTCGTCGTCCTGACCACCGTCGCG	GTTCTGGCCCCCGTCACGGTTCTGATTTCC
GTCGCGGTTCTGGTTGCCGTCGCG	GTTCTGCTTGTCGCGGTTCTGGCCCCC
GTCGCGATTCTGGCCCCCGTCGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049836.1\|WP_165630227.1\|3577463_3578123_-\|threonylcarbamoyl-AMP-synthase	unknown	unknown	gnl\|CDD\|223088
NZ_CP049836.1\|WP_165630226.1\|3576207_3577467_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|234571
NZ_CP049836.1\|WP_058252744.1\|3592282_3593101_+\|DUF3105-domain-containing-protein	unknown	unknown	gnl\|CDD\|378632
NZ_CP049836.1\|WP_165630232.1\|3594167_3594596_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|316372
NZ_CP049836.1\|WP_165630231.1\|3593177_3594086_+\|DUF305-domain-containing-protein	unknown	unknown	gnl\|CDD\|367619
NZ_CP049836.1\|WP_165630867.1\|3594610_3595483_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|369561
NZ_CP049836.1\|WP_058252745.1\|3590479_3592132_-\|arginine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234964
NZ_CP049836.1\|WP_165630233.1\|3595640_3596009_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319939
NZ_CP049836.1\|WP_065632840.1\|3581962_3582895_+\|heme-transporter	unknown	unknown	gnl\|CDD\|226243
NZ_CP049836.1\|WP_165630225.1\|3574258_3574672_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|340888
NZ_CP049836.1\|WP_165630229.1\|3586646_3587732_-\|threonine-synthase	unknown	unknown	gnl\|CDD\|236013
NZ_CP049836.1\|WP_010842972.1\|3580238_3580451_-\|50S-ribosomal-protein-L31	unknown	unknown	gnl\|CDD\|234576
NZ_CP049836.1\|WP_065632841.1\|3580752_3581961_+\|sulfite-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|99796
NZ_CP049836.1\|WP_055474996.1\|3579041_3580118_-\|peptide-chain-release-factor-1	unknown	unknown	gnl\|CDD\|234801
NZ_CP049836.1\|WP_165630230.1\|3587724_3589065_-\|homoserine-dehydrogenase	unknown	unknown	gnl\|CDD\|235783
NZ_CP049836.1\|WP_055474992.1\|3573512_3574262_-\|F0F1-ATP-synthase-subunit-A	unknown	unknown	gnl\|CDD\|235617
NZ_CP049836.1\|WP_058252756.1\|3574956_3576156_-\|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase	unknown	unknown	gnl\|CDD\|133463
NZ_CP049836.1\|WP_058252749.1\|3585694_3586666_-\|homoserine-kinase	unknown	unknown	gnl\|CDD\|234920
NZ_CP049836.1\|WP_065632836.1\|3589061_3590483_-\|diaminopimelate-decarboxylase	unknown	unknown	gnl\|CDD\|273415
NZ_CP049836.1\|WP_065632842.1\|3578127_3579036_-\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	unknown	unknown	gnl\|CDD\|236467

Protein	Function_ID	Function_description	E-value
NZ_CP049836.1\|WP_165630227.1\|3577463_3578123_-\|threonylcarbamoyl-AMP-synthase	gnl\|CDD\|223088	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis].	1.6743e-70
NZ_CP049836.1\|WP_165630226.1\|3576207_3577467_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|234571	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed.	1.75073e-178
NZ_CP049836.1\|WP_058252744.1\|3592282_3593101_+\|DUF3105-domain-containing-protein	gnl\|CDD\|378632	pfam11303, DUF3105, Protein of unknown function (DUF3105). Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.	3.94805e-52
NZ_CP049836.1\|WP_165630232.1\|3594167_3594596_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|316372	pfam13847, Methyltransf_31, Methyltransferase domain. This family appears to have methyltransferase activity.	1.68132e-14
NZ_CP049836.1\|WP_165630231.1\|3593177_3594086_+\|DUF305-domain-containing-protein	gnl\|CDD\|367619	pfam03713, DUF305, Domain of unknown function (DUF305). Domain found in small family of bacterial secreted proteins with no known function. Also found in Paramecium bursaria chlorella virus 1. This domain is short and found in one or two copies. The domain has a conserved HH motif that may be functionally important. This domain belongs to the ferritin superfamily. It contains two sequence similar repeats each of which is composed of two alpha helices.	1.04847e-20
NZ_CP049836.1\|WP_165630867.1\|3594610_3595483_-\|alpha/beta-hydrolase	gnl\|CDD\|369561	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	3.04041e-69
NZ_CP049836.1\|WP_058252745.1\|3590479_3592132_-\|arginine--tRNA-ligase	gnl\|CDD\|234964	PRK01611, argS, arginyl-tRNA synthetase; Reviewed.	0
NZ_CP049836.1\|WP_165630233.1\|3595640_3596009_+\|VOC-family-protein	gnl\|CDD\|319939	cd08351, ChaP_like, ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha), and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.	8.33256e-48
NZ_CP049836.1\|WP_065632840.1\|3581962_3582895_+\|heme-transporter	gnl\|CDD\|226243	COG3720, HemS, Putative heme degradation protein [Inorganic ion transport and metabolism].	8.78288e-08
NZ_CP049836.1\|WP_165630225.1\|3574258_3574672_-\|hypothetical-protein	gnl\|CDD\|340888	cd17330, MFS_SLC46_TetA_like, Eukaryotic Solute carrier 46 (SLC46) family, Bacterial Tetracycline resistance proteins, and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of the eukaryotic proteins MFSD9, MFSD10, MFSD14, and SLC46 family proteins, as well as bacterial multidrug resistance (MDR) transporters such as tetracycline resistance protein TetA and multidrug resistance protein MdtG. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. TetA proteins confer resistance to tetracycline while MdtG confers resistance to fosfomycin and deoxycholate. The Solute carrier 46 (SLC46) family is composed of three vertebrate members (SLC46A1, SLC46A2, and SLC46A3), the best-studied of which is SLC46A1, which functions both as an intestinal proton-coupled high-affinity folate transporter involved in the absorption of folates and as an intestinal heme transporter which mediates heme uptake. MFSD10 facilitates the uptake of organic anions such as some non-steroidal anti-inflammatory drugs (NSAIDs) and confers resistance to such NSAIDs. The SLC46/TetA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	0.00977459
NZ_CP049836.1\|WP_165630229.1\|3586646_3587732_-\|threonine-synthase	gnl\|CDD\|236013	PRK07409, PRK07409, threonine synthase; Validated.	0
NZ_CP049836.1\|WP_010842972.1\|3580238_3580451_-\|50S-ribosomal-protein-L31	gnl\|CDD\|234576	PRK00019, rpmE, 50S ribosomal protein L31; Reviewed.	5.3593e-42
NZ_CP049836.1\|WP_065632841.1\|3580752_3581961_+\|sulfite-reductase-subunit-alpha	gnl\|CDD\|99796	cd06199, SiR, Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.	0
NZ_CP049836.1\|WP_055474996.1\|3579041_3580118_-\|peptide-chain-release-factor-1	gnl\|CDD\|234801	PRK00591, prfA, peptide chain release factor 1; Validated.	0
NZ_CP049836.1\|WP_165630230.1\|3587724_3589065_-\|homoserine-dehydrogenase	gnl\|CDD\|235783	PRK06349, PRK06349, homoserine dehydrogenase; Provisional.	0
NZ_CP049836.1\|WP_055474992.1\|3573512_3574262_-\|F0F1-ATP-synthase-subunit-A	gnl\|CDD\|235617	PRK05815, PRK05815, F0F1 ATP synthase subunit A; Validated.	1.63122e-60
NZ_CP049836.1\|WP_058252756.1\|3574956_3576156_-\|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase	gnl\|CDD\|133463	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins. WecA is an UDP-N-acetylglucosamine (GlcNAc):undecaprenyl-phosphate (Und-P) GlcNAc-1-phosphate transferase that catalyzes the formation of a phosphodiester bond between a membrane-associated undecaprenyl-phosphate molecule and N-acetylglucosamine 1-phosphate, which is usually donated by a soluble UDP-N-acetylglucosamine precursor. WecA participates in the biosynthesis of O antigen LPS in many enteric bacteria and is also involved in the biosynthesis of enterobacterial common antigen. A conserved short sequence motif and a conserved arginine at a cytosolic loop of this integral membrane protein were shown to be critical in recognition of substrate UDP-N-acetylglucosamine.	1.45898e-72
NZ_CP049836.1\|WP_058252749.1\|3585694_3586666_-\|homoserine-kinase	gnl\|CDD\|234920	PRK01212, PRK01212, homoserine kinase; Provisional.	8.13641e-99
NZ_CP049836.1\|WP_065632836.1\|3589061_3590483_-\|diaminopimelate-decarboxylase	gnl\|CDD\|273415	TIGR01048, Diaminopimelate_decarboxylase, diaminopimelate decarboxylase. This family consists of diaminopimelate decarboxylase, an enzyme which catalyzes the conversion of diaminopimelic acid into lysine during the last step of lysine biosynthesis. [Amino acid biosynthesis, Aspartate family].	1.12334e-171
NZ_CP049836.1\|WP_065632842.1\|3578127_3579036_-\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	gnl\|CDD\|236467	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional.	1.79346e-84

>NZ_CP049836.1|WP_065632840.1|3581962_3582895_+|heme-transporter
MTHSAGDHPHARSDLEILLRTAGFADSSVNHDVPAVAARLPGLAQVVGVTVAGPVIMNAVGVHDLPTTVGGPLRVDSQQIALRLNPSRLSSALLSDPAAHVPPTLRLFDHRGNTAHATYLTENSDRLAFEAMTCTGAAAVLDGPFVDSPAPQCVDPSASIDDDQVAQFDAVLTDGGVARLAALPHLDCARTVRVETRAVIAALEHAAGLGMTVTFATAAPGCIQMRQDRLDGAREHRGQMVLASGSARVMINFDLVGECWVTWPRGVWDRTGSLEIYSRGGECALIVTQTGAVAPPCAQAWQHLAADLAG
>NZ_CP049836.1|WP_065632841.1|3580752_3581961_+|sulfite-reductase-subunit-alpha
MYDAASTGSSLTVDTARTSPARRTGKTARSQWNRRNPYPATVVRNELISGPGSAKEVRHLELDLGDSGITYEPGDGIGIAPTNDPALVDLLLARLRAVGDEIIADRKATYTLREALTSRYEIGAPSKYLVRVVAERTGHPELTRLLDAGDPQALDAWLHGLDVLDLLDLDPTFTPTPEELLEELSPLAHREYSISSSPLVHGDTVHITMATVRYRVADRDRGGVCSTHLADRCAPGATVPVFISPNKKFRLPADDVSAVMIGPGTGIAPFRGFLHERAAAGAPGGNWLFFGDQHRGHDYLYAEELDRFVTDGLLDRLDLAFSRDQEHKIYVQDRMCEHGGELFAWLEAGAHLYVCGDATTMADDVDAALHEIVAEHGGLEPDQAAAYVDRLRAENRYSRDVY
>NZ_CP049836.1|WP_010842972.1|3580238_3580451_-|50S-ribosomal-protein-L31
MKQGIHPEYATTTVVCGCGNTFETRSTAANGRINVEVCSQCHPFYTGKQKILDTGGRVARFEKRYGKRAK
>NZ_CP049836.1|WP_055474996.1|3579041_3580118_-|peptide-chain-release-factor-1
MSTQSPSAIDDILAEHSGLERQLADPALHDDPAAARRVGKRFAELAPVMATYTRLKAAREDLEAARELAADDASFAAEIPSLEEAVEELDATLTDLLAPRDPHDADDVVLEIKSGAGGEESALFAADLARMYLKYCERHGWKAQVLGVTESDLGGYKEATFSIKSKEAVRDGVWSRLKFEGGVHRVQRVPVTESQGRIHTSAAGVLIYPEPEEVAEVTIDESELRIDVYRSSGKGGQGVNTTDSAVRITHLPTGIVVTCQNERSQLQNKARAMQVLAARLQSAAEEEAEAAAAQGRAAQIRTVDRSERIRTYNFPENRITDHRIGYKANNLDAVLAGDMDNLLDALVAADRQARMEAE
>NZ_CP049836.1|WP_065632842.1|3578127_3579036_-|peptide-chain-release-factor-N(5)-glutamine-methyltransferase
MTGRPTPLSDELRAATARLAASGIDSARRDAEWLMAHVLGIDAGRLVLVDTIDDAPARAFRSAIDQRSQRIPLQHIIGTAAFGPVELAVGPGVFIPRPETEYLLEWAVDRLRATPGSHFAADFCSGSGALAIGIAAMSPATRVVAIEADEDALVWLRRNVADATPAVGSRVDVVAADVTDPDQVAGAIPAGSVSVLVTNPPYVPLDAVVGPEVAHDPARAVFGGADGMSVIVPMVPVIARTLTPGGVVGIEHDDTTADAVVSCLHAHGDFEEVTRHTDLTGRPRFVMARRRQAGSVGRGMAG
>NZ_CP049836.1|WP_165630227.1|3577463_3578123_-|threonylcarbamoyl-AMP-synthase
MSTVFDCNDPQNRSSGIRAAVGAAKAGRLIVMPTDTLYGVGCDAFDSDAVGALLAAKHRGRDMPVPVLVGSWHSIDGLVLSVPQPARDLIEAFWPGGLSLVVRQAPSLAWDLGDTDGTVMLRMPLHPVAIDVLREVGPMAVSSANVSGRPPATTADEAREQLGDEIAVYLDGGAAPAAQASTIVDVSGPSPRILREGAVSTDAVADVLDTDPAALLAER
>NZ_CP049836.1|WP_165630226.1|3576207_3577467_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MSPDAPRFGPPGVEAGGAPTGDAAVDALVSREVGRRRDTLQLLASETDPTPGVRAAMASVFDAKYAEGYPGARYHGGCEVADELEELAVGRARALFGAAYVNVQPLSGSAANLAVYAAFAQPGDPVLALRLEHGGHQTHGSRANFSGRWFSPLHYEVRRDDELVDYDQVRDLALVHRPRILVAGAASYSRTFDFPTLRRIADEAECILWVDAAHLAGHIAAGLLPSPVPHADIVTLSTNKVIRGPRGGVILARAEHGEALRKAVFPFVQGGPAMHAVAAKAVACAESGTDEFAGYVRRAVDNARGLAAELASRGARVVSGGTDIHLAVVDVSGFGISGMEAQHRLGAAGIVVDKAVLPFDTRPVSEGSAIRIGTPVATERGMTAAMHPVVADAMAAAMSTRDRETHERIRREIAALAYG
>NZ_CP049836.1|WP_058252756.1|3574956_3576156_-|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase
MTGAAPVLLAAAADGGGTGVPLRELLLVGLTAAAMTYLLTSAVRVFAIRAGAVAVPRVRDVHVIPTPRLGGLGMFGGVVAGIALAANLPALNRGFAYTTDMTAVIAAGTVIVLVGVVDDRWGLDALTKFVGQLTAAGVLVLLGISWLQLYIPFADIGTLVLDPLQAGLLTVAITVATINAINFVDGLDGLAAGLGLIAAAAICMFSLGLLRDQGGDVSYYPPALISVALAGACLGFLPHNFSPARIFMGDSGAMLIGLLLAAASTSASGRIAVNAYGPADIFTLLSPLILVAAVVFIPMLDMLLAVIRRTRAGVGFYTPDKMHLHHRLLELGHSQRRVALIIYLWVGVLAFSAAASTLFPLSVVAPAFGAGLVVAMLVTMAPRLHRRLAELRTSTKAYR
>NZ_CP049836.1|WP_165630225.1|3574258_3574672_-|hypothetical-protein
MTASAPDSAPVYPQAPTGLRRPALIAGGFIVVVAAVSLAVGHPLFAAFFLLGVAGIFVNAILVRRAVDVVVADENPRKTALALNSAMRLGAITALALLAAFLVQPDGLGAMFGLAIGQVVLVLNTVIPVMKGLRSQP
>NZ_CP049836.1|WP_055474992.1|3573512_3574262_-|F0F1-ATP-synthase-subunit-A
MTTAFNLAAEDGEPAIQVGHYTKFELFGLTFNLETIIATALAAAIMLALAFYLKSKVTSTGVPSGVQLFWEAITIQMRGQVESAIGMKIAPYVLPLAVSLFTFILISNWLSILPVQVGHHEILKPPAADVNFAYALALFVFVWYQIAGFRKRGLLGHPKRIIKGHVAFLAPINVIEEFTKPISLSLRLFGNVFAGSMMVALIALFPPYIMWAPNAIWKSFELFVGLIQAFIFALLTILYFSQSMETEDH
>NZ_CP049836.1|WP_058252749.1|3585694_3586666_-|homoserine-kinase
MLSVSADGAGSAAAAAGTVPVGLSTRVRVPASSANLGPGFDCLGIALGIYDEVIVETVPDGVTLEVEGEGADAVPRDDSHLVVRALTRGLAHAGLRAPGLTLRCVNRIPHSRGLGSSAAAAVSGLAAASGLISAAGLGPGLSADELVQLSSEFEGHPDNAAASVLGSAVVTWTESADGVASYHAHRLPVHPDIYATVFVPDTESSTSFTRGLLPDSVPRADAVFNLSRSALAVVALTTDPRNLMAASQDRLHQPYRASAMAPTHDLVSALRARGHAATVSGAGPTVLVLGTAPVPAEIRQLAQGLGFDARSVAVAGGVEITVG
>NZ_CP049836.1|WP_165630229.1|3586646_3587732_-|threonine-synthase
MTEATSTPVHRAWPGLIEAYRSRLPVADDWKVVTLLEGGTPLISAPHLSSLTGCEVYLKVEGLNPTGSFKDRGMTMAVSNAVNNGKTAVLCASTGNTSASAAAYATRAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQVEGNFDDCLELARKATAEFTEIELVNSVNPARIEGQKTAAFEIVDVLGRAPDVHALPVGNAGNITAYWKGYKEYHADGVSSSVPRMLGVQAAGAAPLVNGAPVKDPETVATAIRIGSPASWNQAVAAKDESNGQFLAATDEKLLEAYRLVAGKEGVFVEPASAASVAGLLAASADGWIGRGSTVVCTVTGNGLKDPDTALAGIPAVEAIPVDPVAVANALGVG
>NZ_CP049836.1|WP_165630230.1|3587724_3589065_-|homoserine-dehydrogenase
MTGSVQNTSGATDADSRTIGVAVLGMGNVGAEVVRIITDNADDLRARVGAPVEIRGVAVRDLGRPRKIAQDLLTDDPAALVARDDVDIVVELMGGIDPARGLIRSALESGKSVVTANKALLAEYTGELATAAADAKVDLYFEAAVAGAIPVIRPLMQSLAGDTVERVNGIVNGTTNFILSAMDETGADYADTLAEAGRLGYAEADPTADVEGYDAAAKAAILASIAFHTRVTAADVHREGISSVTSADLIAAKKFDCTIKLLSICERVRDANGAQRISARVYPALIPLTHPLATVNGAFNAVVVEAENAGRLMFYGQGAGGSPTASAVLGDMVMAARNRVHGGRGPLESTYASLPVAPIDDVFTRYYVSMRVADKPGVLAQVAGEFSKRSVSIAAVRQEGAGDDARLILVTHRAPDRAQSDCVAALEDMDAVIKVSSVLRLEGTDD
>NZ_CP049836.1|WP_065632836.1|3589061_3590483_-|diaminopimelate-decarboxylase
MNAHPAGPRHAELLAAPHLAERPNDPAVLAAIPAQVWPRNASRDESGELRLAGVPVSQLAEEFGTPAFVVDEADFRSRCRDMMAAFGPYGRVHYASKAFLSTEIARWVDDEGLSLDVCSGGELAIALRAGFPPERIALHGNNKSVDELRAAVDAGIGHVVLDSMIEIDRLDVIAGERGVVADVLVRVTVGVEAHTHEFISTAHEDQKFGFSLAGGIAMEAIRRVFATDNLRLVGLHSHIGSQIFDMDGFELAAHRVLGLLRDVVGEFGVEKTAQMSVVDLGGGLGISYLPDERPLPVQKVAETLAAIVERESAALGLPMPTIAVEPGRAIAGPGTITLYRVGTVKDVALGGGAVRRYVSVDGGMSDNIRTVLYDAEYDVRLVSRVSEARAVVCRVVGKHCESGDIVIKDCWLPEDLGPGDLIAVAATGAYCYSMSSRYNMTMRPPVVAVADGNARLLLRRETIDDFLSLEVGL
>NZ_CP049836.1|WP_058252745.1|3590479_3592132_-|arginine--tRNA-ligase
MTPADLAALLRDVTLTVVRDRGLDENLVPDSIVVERPRHADHGDYSTNVALQMGKRLGVNPRELAGWLAEAFAAAEGVAKAEIAGPGFVNLWLGAAAQNTVVAAVLARGADYGRGNELAGSVINLEFVSANPTGPIHLGGTRWAAVGDALGRVLAARGGAVTREYYFNDHGAQIDRFARSLEAAALGNPTPEDGYAGDYIADIAAKVVETVPEVLSQPDADRLETFRSVGVDLMFTHIKQSLHDFGTDFDVFTHEDKMFATGLVDECIGELKANGNLYEKDGAWWLRSTEFGDDKDRVVLKSDGNAAYIAGDIAYYRDKRNRGFNLCIYMLGADHHGYISRLKAAAAALGDDPATVEVLIGQMVNLVRDGTPVRMSKRAGTVITLDDLVDAVGVDGARYSLIRSSVDVNIDIDLDLLTKQSNDNPVYYVQYAHARMSALARNAADLGVVSSLDHLDLLDDPAEGELIRTIGDFDDVVATAATLREPHRVCRYLEVLAGTYHRFYAKCRVLPQGDEKPADIHRARLALCEATRQVLANGLGLVGVTAPEQM
>NZ_CP049836.1|WP_058252744.1|3592282_3593101_+|DUF3105-domain-containing-protein
MARKPGANVPKSRKRAGSVPSATGRQVDWMLIGAVVVVIGLIAGLAIYLVPKFNERRAEQKDDFAVETVSEFVPSPQNPDPSANIPGVTKRYYEAARHVTATQRVAYDQSPPFGGPHDEIWATCTGVVYPNPLRSENAVHALEHGAVWITYNPDTISPEDLDYLKQLVRGEQYLFLSPYPGLDQPVSLQSWGHQLKLESARDPRVNQFITALRRNMMPGVYPENPQTAAYPETQATCTAIPGFDPSNPPPADEGEPGPDAVPMDGGNQQPAG
>NZ_CP049836.1|WP_165630231.1|3593177_3594086_+|DUF305-domain-containing-protein
MTDNSDRPESRDGTTTPEGPDDTAEPSSRPRILLALGGAALLLFGLGLGLLIQASLADDSTGDDSPAANSAAVGFAQDMTRHHEQGVELAAIELEHGTDPEVRSMAFDILTAQSNEIGQMQSWLTRWGQPVTNPGATMAWMGHGGSETNGHDHSDPADHTAGGHDHGHGGDGGSDHGDMDHGDMDHGDMDHGDMSAPSSGAPAAGAADSDAEQPPMPGMATSAEMQQFRAMRGPEVDIRFLQLMLRHHEGGLHMMEYAADPANVEQAYVRDLASSMKRTQDKEIAIITQMLALRGAQPLPLN
>NZ_CP049836.1|WP_165630232.1|3594167_3594596_+|methyltransferase-domain-containing-protein
MLSPRLAAAVDALPLAPGLRVLEIGCGPGPAAREVARRVGPDGFVLGVDRSPQAVNAARRAAVAGGFGPDRLDFDCSAIEDFDLGARIPFDVAFALRVGALDGRHPDLYDAAVRSVARALRSDGVLFVDGGDPLRRIELPVG
>NZ_CP049836.1|WP_165630867.1|3594610_3595483_-|alpha/beta-hydrolase
MRNDFAPDLRRVALIAPAQLVSRRTLPVVRRLYRVRNGRAPVTTATTPSGVEVRVFRPAHSSGRLPALLWIHGGGYITGSAAQDDRWARAMAERVGIEVVSVDYRLAPEHPYPAAIEDCLDALRWMTDQPDVDTTRIAIGGNSAGGGLAAALAFRARDEGVGLRLQLLTYPMLDDRTREPDPHHRLWNASANAFGWSSYLGGADTREAVPARRTDLAGLPAAWIGVGTLDLFATEDRDYAERLRAAGVDCQVDVVPGAFHGFDIVAPRTSIAQDFFGRQCEAVRRALAHD
>NZ_CP049836.1|WP_165630233.1|3595640_3596009_+|VOC-family-protein
MPVSFNHIIIGAHDPQESADFYLDVLGARPAPGWGPFVNILLDDDTLLQFAPAPVAEPIHMAFLMDDIEFDRGYDALRRRGVDHWADPQMRRPNEISTEEGRRVYFKDPSGQLLEMLTEPYV

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Crispr_ID: NZ_CP049836_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049836_6

3879971-3880071

Orphan

Consensus_repeat	Method
GAGTTCGCGCCGCAGACTCGCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP049836_6

>merge|NZ_CP049836|6|3879971-3880071|CRISPRCasFinder
GAGTTCGCGCCGCAGACTCGCCGCCCGCTCCCTGAGGAGTCCCGGAGCCTGCGGAGGGACGTCACGAAGGGTCTACAGCAGTTCGCGCCGCAGACTCGCCG

>NZ_CP049836|6|6|3879971-3880071|CRISPRCasFinder
GAGTTCGCGCCGCAGACTCGCCG	CCCGCTCCCTGAGGAGTCCCGGAGCCTGCGGAGGGACGTCACGAAGGGTCTACAG
CAGTTCGCGCCGCAGACTCGCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049836.1\|WP_165630265.1\|3871648_3873367_-\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|226951
NZ_CP049836.1\|WP_165630264.1\|3869170_3870595_+\|class-II-fumarate-hydratase	unknown	unknown	gnl\|CDD\|234779
NZ_CP049836.1\|WP_058250729.1\|3881372_3882314_+\|type-I-pantothenate-kinase	unknown	unknown	gnl\|CDD\|235466
NZ_CP049836.1\|WP_083229304.1\|3882285_3882765_-\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|225039
NZ_CP049836.1\|WP_068970176.1\|3873537_3874185_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP049836.1\|WP_165630266.1\|3877734_3878601_-\|acyl-ACP-desaturase	unknown	unknown	gnl\|CDD\|153109
NZ_CP049836.1\|WP_068970178.1\|3867464_3869162_+\|fumarate-hydratase	unknown	unknown	gnl\|CDD\|237955
NZ_CP049836.1\|WP_068970156.1\|3870600_3871287_+\|GlcNAc-PI-de-N-acetylase	unknown	unknown	gnl\|CDD\|376836
NZ_CP049836.1\|WP_068970153.1\|3878644_3879952_-\|serine-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|234571
NZ_CP049836.1\|WP_065629922.1\|3866379_3867375_+\|class-II-fructose-bisphosphatase	unknown	unknown	gnl\|CDD\|236536
NZ_CP049836.1\|WP_068970175.1\|3886781_3887321_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049836.1\|WP_068970149.1\|3882791_3883571_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187554
NZ_CP049836.1\|WP_058250725.1\|3876100_3877393_-\|PhoH-family-protein	unknown	unknown	gnl\|CDD\|224787
NZ_CP049836.1\|WP_068970146.1\|3886041_3886710_+\|hemolysin-III-family-protein	unknown	unknown	gnl\|CDD\|273425
NZ_CP049836.1\|WP_068970148.1\|3883653_3885117_+\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NZ_CP049836.1\|WP_083229305.1\|3887414_3888989_+\|PepSY-domain-containing-protein	unknown	unknown	gnl\|CDD\|225723
NZ_CP049836.1\|WP_058250736.1\|3890989_3892078_-\|3-deoxy-7-phosphoheptulonate-synthase	unknown	unknown	gnl\|CDD\|236435
NZ_CP049836.1\|WP_068970147.1\|3885144_3885927_-\|isoprenyl-transferase	unknown	unknown	gnl\|CDD\|237825
NZ_CP049836.1\|WP_068970155.1\|3874567_3875542_-\|L,D-transpeptidase-family-protein	unknown	unknown	gnl\|CDD\|226309
NZ_CP049836.1\|WP_068970144.1\|3889104_3890754_+\|alkaline-phosphatase	unknown	unknown	gnl\|CDD\|226070

Protein	Function_ID	Function_description	E-value
NZ_CP049836.1\|WP_165630265.1\|3871648_3873367_-\|GAF-domain-containing-protein	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	1.18448e-34
NZ_CP049836.1\|WP_165630264.1\|3869170_3870595_+\|class-II-fumarate-hydratase	gnl\|CDD\|234779	PRK00485, fumC, fumarate hydratase; Reviewed.	0
NZ_CP049836.1\|WP_058250729.1\|3881372_3882314_+\|type-I-pantothenate-kinase	gnl\|CDD\|235466	PRK05439, PRK05439, pantothenate kinase; Provisional.	0
NZ_CP049836.1\|WP_083229304.1\|3882285_3882765_-\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|225039	COG2128, COG2128, Uncharacterized conserved protein [Function unknown].	1.20071e-23
NZ_CP049836.1\|WP_068970176.1\|3873537_3874185_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	5.51755e-58
NZ_CP049836.1\|WP_165630266.1\|3877734_3878601_-\|acyl-ACP-desaturase	gnl\|CDD\|153109	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 10 to yield oleic acid in the ACP-bound form. The enzymatic reaction requires molecular oxygen, NAD(P)H, NAD(P)H ferredoxin oxido-reductase and ferredoxin. The enzyme is active in the homodimeric form; the monomer consists mainly of alpha-helices with the catalytic diiron center buried within a four-helix bundle. Integral membrane fatty acid desaturases that introduce double bonds into fatty acid chains, acyl-CoA desaturases of animals, yeasts, and fungi, and acyl-lipid desaturases of cyanobacteria and higher plants, are distinct from soluble acyl-ACP desaturases, lack diiron centers, and are not included in this CD.	3.17259e-33
NZ_CP049836.1\|WP_068970178.1\|3867464_3869162_+\|fumarate-hydratase	gnl\|CDD\|237955	PRK15389, PRK15389, fumarate hydratase; Provisional.	0
NZ_CP049836.1\|WP_068970156.1\|3870600_3871287_+\|GlcNAc-PI-de-N-acetylase	gnl\|CDD\|376836	pfam02585, PIG-L, GlcNAc-PI de-N-acetylase. Members of this family are related to PIG-L an N-acetylglucosaminylphosphatidylinositol de-N-acetylase (EC:3.5.1.89) that catalyzes the second step in GPI biosynthesis.	2.36355e-23
NZ_CP049836.1\|WP_068970153.1\|3878644_3879952_-\|serine-hydroxymethyltransferase	gnl\|CDD\|234571	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed.	0
NZ_CP049836.1\|WP_065629922.1\|3866379_3867375_+\|class-II-fructose-bisphosphatase	gnl\|CDD\|236536	PRK09479, glpX, fructose 1,6-bisphosphatase II; Reviewed.	0
NZ_CP049836.1\|WP_068970149.1\|3882791_3883571_-\|SDR-family-oxidoreductase	gnl\|CDD\|187554	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5. This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.8e-13
NZ_CP049836.1\|WP_058250725.1\|3876100_3877393_-\|PhoH-family-protein	gnl\|CDD\|224787	COG1875, COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only].	0
NZ_CP049836.1\|WP_068970146.1\|3886041_3886710_+\|hemolysin-III-family-protein	gnl\|CDD\|273425	TIGR01065, Hypothetical_UPF0073_protein_yqfA., channel protein, hemolysin III family. This family includes proteins from pathogenic and non-pathogenic bacteria, Homo sapiens and Drosophila. In Bacillus cereus, a pathogen, it has been show to function as a channel-forming cytolysin. The human protein is expressed preferentially in mature macrophages, consistent with a role cytolytic role.	1.18481e-54
NZ_CP049836.1\|WP_068970148.1\|3883653_3885117_+\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	4.73836e-105
NZ_CP049836.1\|WP_083229305.1\|3887414_3888989_+\|PepSY-domain-containing-protein	gnl\|CDD\|225723	COG3182, PiuB, Uncharacterized iron-regulated membrane protein [Function unknown].	4.87738e-76
NZ_CP049836.1\|WP_058250736.1\|3890989_3892078_-\|3-deoxy-7-phosphoheptulonate-synthase	gnl\|CDD\|236435	PRK09261, PRK09261, phospho-2-dehydro-3-deoxyheptonate aldolase; Validated.	0
NZ_CP049836.1\|WP_068970147.1\|3885144_3885927_-\|isoprenyl-transferase	gnl\|CDD\|237825	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional.	1.85521e-130
NZ_CP049836.1\|WP_068970155.1\|3874567_3875542_-\|L,D-transpeptidase-family-protein	gnl\|CDD\|226309	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown].	2.00555e-32
NZ_CP049836.1\|WP_068970144.1\|3889104_3890754_+\|alkaline-phosphatase	gnl\|CDD\|226070	COG3540, PhoD, Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism].	2.52583e-148

>NZ_CP049836.1|WP_068970153.1|3878644_3879952_-|serine-hydroxymethyltransferase
MTANPSSLNSMSLAELDPDVAAAMNGELSRQRDTLEMIASENFVPRAVLQAQGSVLTNKYAEGYPGRRYYGGCEYVDVVEDIARNRAKELFGADFANVQPHSGAQANAAVLQALMEPGETMLGLDLAHGGHLTHGMRLNFSGKLYENAFYGVSKEDFRIDMDEVRKIALDVKPKVIVAGWSAYPRTLDFEAFRSVADEVGAHLWVDMAHFAGLVAAGLHPSPVPHADVVSSTVHKTLGGPRSGIILAKQEWAKKLNSAVFPGQQGGPLMHAIAGKAVALKIAATDEFAERQRRTLSGARLLAERLNGSDVAGAGVSVLTGGTDVHLVLVDLRNSALDGQQAEDLLHQVGITVNRNAVPFDPRPPMVTSGLRIGTPALATRGFGDEQFTEVADIIATALAAGDAADVSALRGRVSKLALDFPLYDGLEEWGLMSRI
>NZ_CP049836.1|WP_165630266.1|3877734_3878601_-|acyl-ACP-desaturase
MNALTEDDLIIALEKALPEIAEDHQSAAAPWNPHDWVPWDDGRNFGFLGGADFNPSEAFLSDEARAGLLALLLTKDNLPSYHRVLAKHFPAFSDWRQLVGVWTAEDNRHAIVLRDYLVVRRAIDPVDAEERRRIHVTQGYRQTPEQVEPLGPLDVLALMAVHENQCVHFIKRLSAVAGDEALVEILTKISNDDQGQATTFGAFLNAGIVADQDATVLAIDRALALDEPIGHDIADFDAERALIADYENAEVKAAIAAALADAVKLDTVSGLGEEAEAARTRILARTGR
>NZ_CP049836.1|WP_058250725.1|3876100_3877393_-|PhoH-family-protein
MTTRTYVLDTSVLLSDPWAVMRFAEHHVVLPLVVISELEGKRHHHELGWFAREALRMLDDMRLEHGRLDLPLEIGDEGGTLQVELNHTDPAVLPAGFRTDSNDSRILACALNLRAEGKDVTLVSKDTPLRVKAGAVGLAADEYHAQDVVVSGWSGMTELDVATATVDTLFAEGVVDLDEARELPCHTGVRLLSATSSALGRVNADKRVQLVRGDREAFGLHGRSAEQRVALDLLLDESVGIVSLGGKAGTGKSALALCAGLEAVLERRTQRKVVVFRPLYAVGGQQLGYLPGSESDKMGPWAQAVFDTLEGLASPEVIDEVLSRGMLEVLPLTHIRGRSLHDSFVIVDEAQSLERNVLLTVLSRLGSGSRVVLTHDVAQRDNLRVGRHDGVAAVIEKLKGHPLFAHITLTRSERSPIAALVTEMLEEFAP
>NZ_CP049836.1|WP_068970155.1|3874567_3875542_-|L,D-transpeptidase-family-protein
MRLLGLLVIAVLAAIVGGAGQSVAAPETTTPETSTPGTSTTPSPGTTPGSGMPLLDGILDQLAGGTGSDDGTGGAGAPGAGGPTSQMIVVTAPKASDTTATLTAFDRGADGSWKPVIGPTKAYLGSLGMGEPKDDVHRTPQGTFPLDQAFGRAENPGTKMPYRKVDQQDWWDSNMKSPTYNTHVRQPQSPGGDSENLYNSGPVYDYAVNIAHNPQRTPGRASAMFLHVTNGEPTMGCVAIERELMKQILVWLDPAKSPKITIGVNQGAPAGDAPGATPQTAPGTTPGTTPPTTSGVPGADVLTGLLSQLVGVVPALFGLGGQAG
>NZ_CP049836.1|WP_068970176.1|3873537_3874185_+|response-regulator-transcription-factor
MIRVFLVDDHEIVRRGLVELLDSVSDVEVVGEAASVAQALARIPAVSPDVAVLDVRLPDGNGIELCRELLSRVDGLRCLMLTSLTDDEAMMDAILAGASGYVIKDITGMELARAIAEVGAGRSLLDNRAAAALMDRLRARQDAAEPADDGLSEQDRTLLALLGEGLTNRQIAARMHLAEKTVKNYVSRLLGRLGMERRTQAAVYAAKTANRDRRR
>NZ_CP049836.1|WP_165630265.1|3871648_3873367_-|GAF-domain-containing-protein
MVSEFSELDPRSLELQKALSQMRLRELLDEVSDRISQIADVRDQTDGLLQAMLVVSSGLDLETTLESIVASAIRLVDAEYGALGVLGSGHHLSAFLSQGIDAETRVLIGDLPTGGGVLGQLIDQPELLRLSDLSEHPESVGFPANHPPMTSFLGTPIRVRDEIFGNLYLTEKRNGGVFTEDDEVVIQALASAAGIAIDNARLYAQAQNQLAWIEANRDVMTELLTGADHQDVLEQIARKVLTLADADLVFIAEPHDTEEPVELIDELVITVAEGEDGHVFRGQSIPITGSTSGTAFVQRRPVLRNHLEYDVGDSTRYGPVMAAPLRTIDSTRGVLIAMRADGREPFARDLLGLCADFADQAALAMQLATATLQAHHMRVLEDRERIARDLHDHVIQRIFAEGLSLQATLQRTHSPDIRSRLTRSINNLQDIVQEVRSTIFDLQTEDMTVTRLRQRVQEVVDQQIDDLPIQMHVRTSGPLSVVDRPLAENVVAVIREAVSNVVKHARATTVTVSITVADELVVEVIDNGIGLPADVTPSGLANLALRAEKAGGAFTTTPPPGGGLALRWSAQL
>NZ_CP049836.1|WP_068970156.1|3870600_3871287_+|GlcNAc-PI-de-N-acetylase
MTAQLLPFPTDWQTALVLVAHPDDPEYGMAAAVARWTGEGRRVVYALASSGERGIEGLPPAECGPLREAEQRASASIVGVDEVEFWGFPDSDIRNVPELRDKITETVERVRPQVIVSLFGGPEWAPGMPNQRDHMEFAAAVLEAYDALEAPPSWLFENGPAATHGVEVEEQLDTAVRALAAHDRYLSVLDPDTPVLDQARAQIEMATAPRDGDARHVTGFELKRGRPA
>NZ_CP049836.1|WP_165630264.1|3869170_3870595_+|class-II-fumarate-hydratase
MTEETQTDAQGEQYRIEHDTMGEVRVPVDALWRAQTQRAVENFPISGRPLERTQIRAMGLLKAACATVNADLGLLDKEKADAIVAAATEIADGRHDDQFPIDVFQTGSGTSSNMNTNEVIASIAKSNGVEVHPNDHVNMSQSSNDTFPTATHVAATEAAVTDLIPALEHLQKTLADKATEWREVVKSGRTHLMDAVPVTLGQEFGGYARQVEAGIERITAALPRVGELPIGGTAVGTGLNAPDGFGTKVVAELVSLTGVESLTLAKDNFEAQAACDGLVELSGQLKTVAVSLTKVANDVRWMGSGPLTGLGEILLPDLQPGSSIMPGKVNPVLPEAVTQVAAQVIGNDAAVTWGGGNGAFELNVYIPMMARNVLESLKLLANVSRLFADRCITGLQANTERLRTLAESSPSIVTPLNSAIGYEEAAAVAKQALKEGKTIRETVLERGLVGEKLTEDELDARLDVLKMANLDRER
>NZ_CP049836.1|WP_068970178.1|3867464_3869162_+|fumarate-hydratase
MSKPASAPEFLYSDLLPTGADETPYRLITTEGVSTFSVDGRTFLKVDPEAIRRLTAEAMHDISHYLRPAHLAQLRKIIDDPEASGNDRFVALDLLKNVNISAGGVLPMCQDTGTAIVMGKKSEGVLTGTDDAEAISRGVYDAYTQLNLRYSQLAPLTTYEEKNTGSNLPAQIEIYATEQGPKGPEYKFLFMAKGGGSANKSFLFQETKAILNPTSILEFLDEKIRSLGTAACPPYHLAVVIGGTSAEFALKTAKYASAHYLDNLPTQGSMSAHGFRDLELEEEVFRLTQSFGIGAQFGGKYFCHDVRVVRLPRHGASCPVAIAVSCSADRQALGKITADGVFLEQLETDPARYMPAAGVAEDISGGEVVEVDLNRPMPEILAQLSQYPVKTRLSLTGPLVVARDIAHAKIKERLDAGEPMPDYLRDHPVYYAGPAKTPEGMASGSFGPTTAGRMDSYVEQFQAAGGSMVMLAKGNRSKQVTEACGAHGGFYLGSIGGPAARLALDCIKSQEIIEYPELGMEAVWKIEVENFPAFIVVDDKGNDFFTDPSGAVNVPLSGIRIRSKE
>NZ_CP049836.1|WP_065629922.1|3866379_3867375_+|class-II-fructose-bisphosphatase
MTVSTHQAPDRNLAMELVRVTESAALAAGRWVGRGDKNGGDGAAVDAMRELLSSVSMRGVVVIGEGEKDEAPMLYNGEEVGNGEGPDCDVAVDPIDGTTLMAEGRPNSISVIAVSERGTMYDPSAVFYMDKIAVGPEAKGAININESVEWNINSVAKAKGIDVADLTVIVLDRPRHADLIGEIRQAGAKIRLISDGDVAGAVAAADDYSTVDMLMGVGGTPEGIITAVAMKCMGGEIQGKLWPRNDEERQKAIDAGHDLDRVLTNDILVSGENAFFCATGVTNGDMLRGVTYRPNGATTRSLVMRSKSGTVRRIEAVHKPAKLRGYSRIDL
>NZ_CP049836.1|WP_058250729.1|3881372_3882314_+|type-I-pantothenate-kinase
MARNATDRDPSLYLELDRRQWRELRESMPLVLNEDELAELVGLGEQIDLDEVADVYLPLSRLIHLQVAARQRLFAATSTFLGERQTNRQVPFVIGIAGSVAVGKSTTARVLAALLARWESHPKVDLITTDGFLLRTAEMQRRGILHRKGFPESYDRRALLRFVTEVKSGAREVAAPVYSHLAYDIVPDVYHYVRQPDILILEGLNVLQTGATLMVSDLFDFSIYVDAKIDDIESWYISRFLQMRTTSFANPDSHFHAYASLTDDQATAAARDLWTSINRPNLIENILPTRPRASLVLRKDYDHSINRVRLRKL
>NZ_CP049836.1|WP_083229304.1|3882285_3882765_-|carboxymuconolactone-decarboxylase-family-protein
MWIPQDNPSVYKALVALQRASSAGVDPELAELIVIRASQLNGCAYCLHMHTSDALAKDIDPHKLMLIAAWREAGSAFTPAERAALALTESVTLIGENGVPDDVFDSARAHFDAAAMGQLVASIVMINAWNRIALAGGYPAGLDERRAASSVRASAGAPD
>NZ_CP049836.1|WP_068970149.1|3882791_3883571_-|SDR-family-oxidoreductase
MKIVVVGASGALGSRVADLLVERGHEVVRASRATGVDAYTGTGLAAAFDGADAVVDCLSLQTLKAKEAIDFFETTATKIGRAATTAGVAHVVVVSIVNAGDPAVNAKFGYYQGKAAQEAAYGEVVDPAALTILASVQWFELAEQMMSSMGFGPIAAVPRMRCAPAAVADVAVAVADVVTAGPTGKRTIEVSGPVEMDLVDVAKAVAAQTGSPRWIFGVRFGGPAIREGGLVPVDPDVVTSTTLDGWLAGRENASAGERR
>NZ_CP049836.1|WP_068970148.1|3883653_3885117_+|PLP-dependent-aminotransferase-family-protein
MAEKRVNSTADPWAEVAERLGADLFLDLQPDPGAGARGRGATLRRALTEALRSAILDNRLPAGTALPPYRSLAADLGLARGTVSAVYSELIAEGWLTARQGSATRVADGAARPPAIDDPGASTAMPALRHDFSLGRPCAGMFPRNDWIRATRRALTETPDDAFGPAHPRGRLELRNALTGYLARTRGVRTAPDLIVLGTSVLSALELLARTVIGGVVAVESHGLPFHRHALERGGARVVPVRIDADGMVIDELERTGAAAVVLTPSHQFPTGVALSPARRMQVVDWARRTGAVIVEDDYDGEFRYDREPVGALQALGPDVVVHTGSLSKSLSPAVRAGWLATPAHLVEPVLRGKGFREADASIVDQLTLAELIGSGAYDRHIRRSRQAYRTRRDALVSALAGIGLELPGIAAGLHALIPVDHADEGAIVHRAYERGIAVTGQSLFRHPDADPLPSGGIGVGFGTPAASTFGADLTALTGLLADSAAR
>NZ_CP049836.1|WP_068970147.1|3885144_3885927_-|isoprenyl-transferase
MKLLPDRLRRPVLSVYERRLIQLLDTERLPRHVAIICDGNRRWAREAGFEDVSHGHRVGAQRIADMLGWCAGLGIEAVTIYLLSTENLNRSSDELDALLEIVPDIVDEISAPEGEWRIRIVGTLDALPELVAGRLRAAADRTAERQGMNVNVAVGYGGRQEIVDAVRALLEEKVTAGATAAEMVDAVTVEAIDANLYTKGQPDPDLVIRTSGEQRLSGFLLWQSAYSEIWFTDAYWPEFRRVDFLRALRDYSARSRRFGK
>NZ_CP049836.1|WP_068970146.1|3886041_3886710_+|hemolysin-III-family-protein
MSTLLNPPADVRPRLRGVIHHYSAYVAAVAGLALVIGAATVGDPVAVVPCAVYAVTVLGLFAISAGYHRIPWKTARARTRMKRADHAMIFLFIAGTYTPFCALGLPSPTSWWVLGIVWAGAAAGATLKIAWPGAPRWLGVTLYIVLGWVIVAVAPALVGETGLPVLILLALGGVFYSVGGVLYAARWPDPWPETFGHHEVFHACTAVAALLHYVAAWLLVLG
>NZ_CP049836.1|WP_068970175.1|3886781_3887321_+|hypothetical-protein
MRALHRLRGGVVGALSASTAVAAHGLAAGSLPATSSLVFMIAACTVLGWAIGATARRRPGWLGTIGLLAAGQVLAHVSLTALDASSAHHAGVSALAHAPSGTMMFVHAVATLLTAAAIHVVEPALLSVLTAVVALIRAVLDPPADDAIPRAPRATHDDARPRLRAIAALDTRGPPALTR
>NZ_CP049836.1|WP_083229305.1|3887414_3888989_+|PepSY-domain-containing-protein
MRGPPVSLSNLSRPGEPAGPPDPRPETSDDNPTPPAAAPDRRVTPNSWQPLLRRLHFYAGVFIAPFLIVAAVSGGLYAISPSLEQVVYRDQLSTESTGDARPISEQVEAAARIRPDLTLSAVRPAAEPGDTTRVLFDDPSLGASKRQAVFIDPVTLESTGELVSYGSSAALPMRTWISELHRHLHLGEPGRIYSELAASWLWVIAVAGLALWISAYRARRKRRAADLVAFDRSATGRNRTRNRHGVIGVWIAVGLVFLSATGLTWSKYAGEHVSDVRTALSWTTPTVDTSLSGSTSGSDGLGDHSGHGDHGGAGHGQRVPETSGQTIAQLDRVLGTARAAGVDGQVEVSIPTDADTAFTVAETRQPWQFAQDTVTVNGATGAVVDELRFADWPLAAKLTTWGIALHMGILFGWVSQLVLLLLAIALVVLIVRGYQMWWQRRPKRGGAVAVGRPPARGALRRVPVAGAVAIVVVAAVVGWFVPLLGLSLLGFLVVDAALGIRARRKQVGVVTGAGSESSGSVDSR
>NZ_CP049836.1|WP_068970144.1|3889104_3890754_+|alkaline-phosphatase
MRGNPADASPALLTPSTIRCHPDLTLRGGTSRRRFLTWSALVAGLAFTPGLLGGTSPALPTPAHPAGVFGLGVASGDPLPDGVVLWTRLSRNPFAPGGGMGPRPVRVDWEIAADESMTRIVRRGTVHATAEWGHSVHVDVRGLAPAADYFYRFRALGEVSTIGRTRTAPAPFARVEKMTVAVASCQNWSDGYYHAYADLAAHAPDVVLHLGDYIYEKPIPVHGGARPEAVLPLSATREAVDLDDYRERYALYKSDPDLQLAHAMTPFVITFDDHEVDNNWAAAIPEDHTPLTAFALRRARALRAWWENTPVRVAARPNGTVIRAHRRLGFGDLVDLTLLDTRSHRSDQANGDNDTGQNARTADASRTILGAEQERWALDGFASSRHRWNVLAQQVPMADLARTVGSTRAVSMDGWSGYEASRSRILGGAADRGVRNLVSLAGDIHRSVVADLRTSYTDESPMRGVELAATSITSGGDGEDIDDGDRRLKEASPHVRFGNSQRGYLLNRIHSDRWEAEFRVAPSVRSPRGTLRRRALITIPDSTSEVDVV
>NZ_CP049836.1|WP_058250736.1|3890989_3892078_-|3-deoxy-7-phosphoheptulonate-synthase
MTTLPDLPIRSDDNAESTSDRRIRAFRPIPSPDTVRSELPLSARRAVAVQRDRDEIADILAGRDDRLLVIVGPCSVHDPIAAIDYARRLAPLADAYSERLKIVMRVYFEKPRTTVGWKGLINDPGMDNTFDVERGLRTARSLLLDIIDLGLPVGCEFLEPTSPQYIADAVAWGAIGARTTESQVHRQLASGLSMPIGFKNGTDGNVQVAIDGVKAAAAEHVFFGVDDFGNGAVVETAGNEDCHIILRGGTRGPNFDAESVSAAAEALAAAGLPARVMIDCSHANSGKDHVRQAEVATEIATRLRAAREAGEPSNVSGVMLESFLEPGAQSTEATPLVYGKSVTDKCMGWEASAQVLAALARG

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Crispr_ID: NZ_CP049836_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049836_7

5159593-5159670

Orphan

Consensus_repeat	Method
TCGTTGATCTTGTCCTTGGCGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP049836_7

>merge|NZ_CP049836|7|5159593-5159670|CRISPRCasFinder
CCGGTCAGCTTGTCCTTGACGTCGTCGATCTTGCCCTTGACGGCGTCGGCGGCGTCGGTGATCTTCTGCTTGCCCTCG

>NZ_CP049836|7|7|5159593-5159670|CRISPRCasFinder
CCGGTCAGCTTGTCCTTGACGTC	GTCGATCTTGCCCTTGACGGCGTCGGCGGCG
TCGGTGATCTTCTGCTTGCCCTCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049836.1\|WP_058250997.1\|5146634_5147153_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049836.1\|WP_068972620.1\|5153724_5155191_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|341259
NZ_CP049836.1\|WP_058250986.1\|5160842_5161385_-\|tRNA-adenosine-deaminase-associated-protein	unknown	unknown	gnl\|CDD\|274869
NZ_CP049836.1\|WP_082652894.1\|5162473_5163028_-\|putative-glycolipid-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|377662
NZ_CP049836.1\|WP_068972624.1\|5164592_5166719_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226482
NZ_CP049836.1\|WP_058251136.1\|5160358_5160799_-\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|223663
NZ_CP049836.1\|WP_058250995.1\|5148984_5150307_-\|PucR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225306
NZ_CP049836.1\|WP_058250987.1\|5159965_5160235_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049836.1\|WP_065631212.1\|5166914_5167301_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049836.1\|WP_058250985.1\|5161463_5162438_+\|prephenate-dehydrogenase	unknown	unknown	gnl\|CDD\|235824
NZ_CP049836.1\|WP_068972621.1\|5157959_5158628_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370360
NZ_CP049836.1\|WP_058250991.1\|5156983_5157598_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|341258
NZ_CP049836.1\|WP_058250989.1\|5158651_5159356_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370360
NZ_CP049836.1\|WP_068972618.1\|5150303_5151725_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224154
NZ_CP049836.1\|WP_058250992.1\|5155463_5156969_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377380
NZ_CP049836.1\|WP_165630933.1\|5147223_5148963_+\|SulP-family-inorganic-anion-transporter	unknown	unknown	gnl\|CDD\|223732
NZ_CP049836.1\|WP_065631213.1\|5167300_5167939_-\|nucleotidyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|143393
NZ_CP049836.1\|WP_165630742.1\|5151721_5153584_-\|DUF3556-domain-containing-protein	unknown	unknown	gnl\|CDD\|371888
NZ_CP049836.1\|WP_165630743.1\|5168377_5169445_+\|histidinol-phosphate-transaminase	unknown	unknown	gnl\|CDD\|179559
NZ_CP049836.1\|WP_068972623.1\|5163188_5163974_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP049836.1\|WP_068972624.1\|5164592_5166719_+\|AAA-family-ATPase	gnl\|CDD\|226482	COG3973, COG3973, Superfamily I DNA and RNA helicases [General function prediction only].	1.51669e-43
NZ_CP049836.1\|WP_068972620.1\|5153724_5155191_-\|AMP-binding-protein	gnl\|CDD\|341259	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD. This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions.	5.64068e-162
NZ_CP049836.1\|WP_058250986.1\|5160842_5161385_-\|tRNA-adenosine-deaminase-associated-protein	gnl\|CDD\|274869	TIGR03941, conserved_hypothetical_protein, putative tRNA adenosine deaminase-associated protein. This model describes a protein family about 200 amino acids in length with only five invariant residues, including an Arg, a Ser-Asp pair, and two Gly residues. Members always are found exclusively in Actinobacteria, and always adjacent to homologs of TadA, a tRNA-specific adenosine deaminase from Escherichia coli. Homology, phyletic pattern, and gene neighborhood together suggest a housekeeping function in tRNA metabolism. [Unknown function, General].	2.80604e-51
NZ_CP049836.1\|WP_082652894.1\|5162473_5163028_-\|putative-glycolipid-binding-domain-containing-protein	gnl\|CDD\|377662	pfam06475, Glycolipid_bind, Putative glycolipid-binding. This family has a novel fold known as a spiral beta-roll, consisting of a 15-stranded beta sheet wrapped around a single alpha helix. It forms dimers. It has some structural similarity to the E. coli lipoprotein localization factors LolA and LolB. Its structure suggests that it may have a role in glycolipid binding. Its genomic context supports a role in glycolipid metabolism.	2.33006e-54
NZ_CP049836.1\|WP_058251136.1\|5160358_5160799_-\|nucleoside-deaminase	gnl\|CDD\|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	5.04118e-55
NZ_CP049836.1\|WP_058250995.1\|5148984_5150307_-\|PucR-family-transcriptional-regulator	gnl\|CDD\|225306	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism].	2.18115e-16
NZ_CP049836.1\|WP_058250985.1\|5161463_5162438_+\|prephenate-dehydrogenase	gnl\|CDD\|235824	PRK06545, PRK06545, prephenate dehydrogenase; Validated.	4.5246e-100
NZ_CP049836.1\|WP_068972621.1\|5157959_5158628_+\|hypothetical-protein	gnl\|CDD\|370360	pfam09203, MspA, MspA. MspA is a membrane porin produced by Mycobacteria, allowing hydrophilic nutrients to enter the bacterium. The protein forms a tightly interconnected octamer with eightfold rotation symmetry that resembles a goblet and contains a central channel. Each subunit fold contains a beta-sandwich of Ig-like topology and a beta-ribbon arm that forms an oligomeric transmembrane barrel.	1.9028e-13
NZ_CP049836.1\|WP_058250991.1\|5156983_5157598_-\|AMP-binding-protein	gnl\|CDD\|341258	cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase. The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters.	6.03511e-07
NZ_CP049836.1\|WP_058250989.1\|5158651_5159356_+\|hypothetical-protein	gnl\|CDD\|370360	pfam09203, MspA, MspA. MspA is a membrane porin produced by Mycobacteria, allowing hydrophilic nutrients to enter the bacterium. The protein forms a tightly interconnected octamer with eightfold rotation symmetry that resembles a goblet and contains a central channel. Each subunit fold contains a beta-sandwich of Ig-like topology and a beta-ribbon arm that forms an oligomeric transmembrane barrel.	7.63707e-28
NZ_CP049836.1\|WP_068972618.1\|5150303_5151725_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224154	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism].	1.33715e-84
NZ_CP049836.1\|WP_058250992.1\|5155463_5156969_+\|hypothetical-protein	gnl\|CDD\|377380	pfam04545, Sigma70_r4, Sigma-70, region 4. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.	2.64273e-08
NZ_CP049836.1\|WP_165630933.1\|5147223_5148963_+\|SulP-family-inorganic-anion-transporter	gnl\|CDD\|223732	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism].	6.44785e-109
NZ_CP049836.1\|WP_065631213.1\|5167300_5167939_-\|nucleotidyltransferase-domain-containing-protein	gnl\|CDD\|143393	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. S. aureus KNTase is a plasmid encoded enzyme which confers resistance to a wide range of aminoglycoside antibiotics which have a 4'- or 4''-hydroxyl group in the equatorial position, such as kanamycin A. This enzyme transfers a nucleoside monophosphate group from a nucleotide (ATP,GTP, or UTP) to the 4'-hydroxyl group of kanamycin A. This enzyme is a homodimer, having two NT active sites. The nucleotide and antibiotic binding sites of each active site include residues from each monomer. Included in this subgroup is Escherichia coli AadA5 which confers resistance to the antibiotic spectinomycin and is a putative aminoglycoside-3'-adenylyltransferase. It is part of the aadA5 cassette of a class 1 integron. This subgroup also includes Haemophilus influenzae HI0073 which forms a 2:2 heterotetramer with an unrelated protein HI0074. Structurally HI0074 is related to the substrate-binding domain of S. aureus KNTase. The genes encoding HI0073 and HI0074 form an operon. Little is known about the substrate specificity or function of two-component NTs. The characterized members of this subgroup may not be representive of the function of this subgroup. This subgroup belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, co-ordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. These carboxylate residues are conserved in this subgroup.	0.00028295
NZ_CP049836.1\|WP_165630742.1\|5151721_5153584_-\|DUF3556-domain-containing-protein	gnl\|CDD\|371888	pfam12077, DUF3556, Transmembrane protein of unknown function (DUF3556). This family of transmembrane proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 576 to 592 amino acids in length.	0
NZ_CP049836.1\|WP_165630743.1\|5168377_5169445_+\|histidinol-phosphate-transaminase	gnl\|CDD\|179559	PRK03321, PRK03321, putative aminotransferase; Provisional.	0

>NZ_CP049836.1|WP_058250989.1|5158651_5159356_+|hypothetical-protein
MTRRIGAPMTVTKRRATRTRIIASTTAVACAALIPVLDAAPAHADTTVQLPGQSVTKKLKDGTTVTITRSKESARITPSMGATPLHRNAWVSGKYVVTTSDPAAKIGVGAGYIAGCQLTLGGNSNSRAGATAPNFDLQSATTTAETGAGVTIGPGQAVNYVINDREYKDAFGAAGHSSSISFSGGKGTLAYTNETMMVNGCAGYAQARSYAKVSITTDNVSQSIAVYGKPFSMG
>NZ_CP049836.1|WP_068972621.1|5157959_5158628_+|hypothetical-protein
MTQRTLRAVGLSALIGGSVTAALLAGAASAGADTFVRLPGGTAKGEGVQIVRSEESARVSTSMAANGVSRTTWVSGQITLYAPNLKPAKAGPSVGAAGETTLPGSNGTATNGAAATLSTGYIIGCQVNIKGLQGGLSGSLTPTAPSLSGTLTVPLAAGDVTFVVLNTKNIEKAGTYHLGYDDAQIDVQNCGGYAQARAFTTIETTGEVHQKVNLYGKPFSIG
>NZ_CP049836.1|WP_058250991.1|5156983_5157598_-|AMP-binding-protein
MRTGDAVIDFERFYESVEWMAEQLVSCGVRAGSRVGLVIRTGWEFVLAWYSLLEVDAVTVPIVLGPANEPAHSCEIGFVLAHVDQCTEVEDLVEAAVPRSHCRQMYRVGDEFVLAALRTADMLRNEGGLVDLGHEPQAATGQLIAEAERMVADVGLRRGEYVSFEGDLGTRDTMVRILACASAGACVAVDAPYGEPHWGAPSTR
>NZ_CP049836.1|WP_058250992.1|5155463_5156969_+|hypothetical-protein
MTAHANGPLPSRRSPDDGRALDAVAAFDAGLSDQERRVLTERVYAASPRTQSEVADLLGLSRERVTQIDRSTRHRLRSLIEADPALADLSAMINRRAAPVADAAALMADSTLAGTPVGGVEAPCWRVVAAASGLRTSENWIIRGSLRSVAEFTKSAVEAAARPGEAASVITIADHLGLSGDSAARWLLRAGYELLDGHAIAARSTTGEIVVAALSIRGAPLTFDDIIDATSAIPRAHNSIRNALASDVRIVRTDRTRYGLAKWGLPRYEPVHLQIDAILSDHDGAVPLDDVIATIRGRHDVSEATIRSYAGAGEFQIRDGIVTRRERPHRPRRTPGRTRGLYREDDVVHWATTITPAQCRGTGFNIPSALAGLLGIGPGSPVTLETALGTQAFTWASVQARSGSIKRFIDELELEPGTPVFLDFGPHTFTVRRAEQATASSAADILTRIGRQPARLTRTRLLQVLAESLWLPTQSGINDVVELLGRRRETDLADRVAATLR
>NZ_CP049836.1|WP_068972620.1|5153724_5155191_-|AMP-binding-protein
MTSTYFAWDLTHRADAPCVRDDVVALDYAGFARRVEGVAEQLGRAGVRPGDVVATFLPNRIELLVTLMAAWRIGAVATPVNPAFTPEEAEYQLADSGARVVIGTRAAELRSDRARFDVEELATAPSADWRGSLSPAAGDDALLIYTSGSTGRPKGVRLSHDNLHYMASTMVTHFGLTAADHALLVLPLFHVNAICVSFLAPMLAGGQLSITGKFSPSRFFDDVARLTPTYFSAVPTIYALLVSQDGLTAEATGSLRFAVCGAAPISRELLDRVEGAFGIPVVEGYGLTEGTCASACNPVVGVRKLGTVGPALPGQRIAIVDEQGTEVPTGEIGEVVISGPNVMRGYLNRPEATASTIVGGRLHTGDVGRLDEDGYLTLVDRIKDLIIRGGENIYPKEIENALATHPDVLECAVVGAPDELYGELPVAFVVAYPHRGVDAEKLADHLVGRLAKIKQPSTIHVVDQLPRNPVGKIDKPALRSDLRSPQPI
>NZ_CP049836.1|WP_165630742.1|5151721_5153584_-|DUF3556-domain-containing-protein
MGLTQPDFPQVDPETFLQRPFFDRIRVLGAHWADHGFGTPKMVHLIYLMKVFVFYGGVGIVLATLTSGLNPLHVTEWWNQPIVYQKLVLWTVLVEVLGIGGSWGPLAGHFKPMTGGFLYWLRPQTIRLPPWPGKVPFTKGDSRTAFDIAVYALILANLAVAIALPGIASSSLDSVVADNQGLVNPVLMYPLIALFVVIGLRDKVIFIAARSEQYLPAMIFFGVLPFVDMILALKLLIVSVWVGAGISKLGHHFSMVIPPMLSNTPWLPSKRIKRAHYRDFPEDMRPSKLAGGVGHVLGTIVEVVTPLVLLFSTSKSLTVAAVVLMVCFHFFILSTFPLAVPLEWNLLFAYASVFLFLGFPAWDGYALTDTSMPWAMVLIAAALYFFPVLGNLRPDLVSFLPSMRQYAGNWASATWAFAPGAEEKLDEHIVRPAKNTRTQLLASYPADVADVVMHQLLAWRSMHSQGRALYSLMIRHLGSDIDSYTLREAEFSCNSLVAFNFGDGHLHDERLIAALQKRCGFAPGEFTVAWIESQPIHRGTQRFKVIDAALGVIETGTYRVVDAVNEQPWLPNGPIPFQVDWTLDVDARRAVTDPEVVHEPKMRSDDRSATPVRLTDQAPQ
>NZ_CP049836.1|WP_068972618.1|5150303_5151725_-|NAD(P)/FAD-dependent-oxidoreductase
MTTAVVVGGGPNGLAAALHLARNGVDVQVLEAAEVVGGGARSGELTVPGVIHDHCSAFHPLGVGSPFWAEVGLERYGLVWKWPDADCAHPLDSGDAGLLFRSIGATAAGLGADGLRWRAMFGDLAEHFDDLGDDLLRPVVHVPGHPIRLASFGPRAILPATVLARWFRTERARALYGGIAAHLFSRLDRPLTASLGLMIAASGHRYGWPVAEGGSGAITAAIVGALRDSGGKIETGVRVSSRADLPRADITLLDLSPAQVLSIFGDEMPARIRRSYRRYRIGSSAYKVDFAIDGDIPWSNPDCLRAGTVHLGGSFAEIAHTERQRAAGVMVPRPFVLLGQQYIADPGRSAGGVNPIYAYAHVPRGFDGDATEQIVAQIERFAPGFRDRIVATVSTGTEQLHSSNANFAGGDIIGGANDGLQMVLRPRAALDPYAIGVPGVYICSQASPPGAGIHGLCGYHAAESALRYARSRR
>NZ_CP049836.1|WP_058250995.1|5148984_5150307_-|PucR-family-transcriptional-regulator
MTASRPSRALWTAGDAARDRLAGVPAAAGSELLEQAAMIAKTLHENVSDIVTELSAMMAREIDQLDTDPKLVELLEASVHGNVSTIIHVLANDIPIEHLQPTTAAVEYALRLAQRDVPSNSLVRAYHLGQNSVMRECYRLVEDLDLDAGQSMALTRHISDVLSGYIDWISLYVFEAYEDERRRWLGVEGNVQSAAIHSFLDGAESDERAFESETGYALDRRHLALILWSFDDEPRELVALTHAARELGTRVGGGSPPIVTAIDRSTVWAWIPLVGRDVTDGSSVTAVRSTVPAGIRVAVGLPASGARGFRRTHEQALAAYSVATMPGGAASRVIGFGDRGVAVVSLLAQDLESTRAWVHEVLGGLAEDSPNANMLRETLSVYFATKESHLHTAERLNLHRNTVKYRVGKALAEVPADRDRLDLALALTVCEFLGPVIFAH
>NZ_CP049836.1|WP_165630933.1|5147223_5148963_+|SulP-family-inorganic-anion-transporter
MMQPETVSRFLPGLGVLRSYERSWLKGDIVAGIVLTALLIPAGMGYAEVAGLPPVTGLYATVIPLLVYAVVGPSRILVLGPDSSLAPIIAASIIPLAAFDAERIALAGVLAIEVGLVLLIGGLLRLGFVTDLLSKPIRIGYLNGIALVVVLSQLPKLLGFSVDGDSVLQEAIDIVRGVTSGEAELLPTVIGVSCLVLIFALKFWRKAIPGVLVAVVASIIAVAVFGWSDDLPVVGAMPRGFPSPSLEGVTLDDVISLIGPAVGIALIAFADTSVLSRTFAARAGDQVNGSQEMAAIGTANIATGFLSGFAISASSSRTPVAEQAGAKSQLAAVVGALLIVVFIFVAPGVTAYLPSAALAAVVIAAAISLIDISGVVALFRANWVEGALSIAAFLGVALIGVLQGILVAIGLSFIAFVNLAWRPYRTELGRVPGLRGYHDVTRHPEAERIDGVLIIRFDAPLFFANGGMFDDYVRGKVREARTAGRELHTVIIAAEPIVDIDATAVDELVELDDYLRSHGITLVFAEMKDPVRDILRRYDLRVDGRPRFDDTHFAPTTGAKIDEITGQPRRDVQKSNDGI
>NZ_CP049836.1|WP_058250997.1|5146634_5147153_+|hypothetical-protein
MTLFDILPSLKGVTVTRSFDTATWGTPLRTVGPDVVAGDLSLRAESLHRKVAFYLDADGGPVCQSLCPTGVWYPTLVTRITSAVVAHGRVVVYVDAALPLHSALLDVAFPGTHLAGATMLDITVVDLSRHRRTLYAEAPAHLTVTGTIALALSPVIPTRATDPRTASRSVTA
>NZ_CP049836.1|WP_058250987.1|5159965_5160235_-|hypothetical-protein
MTDPSDKVTAAFDTAKAKINELAESGKVQEALGTARDKIDEFVESKQVQDALDTAKDKLNDLAENEKVQEAFSTAKDKINEVSQKFNSR
>NZ_CP049836.1|WP_058251136.1|5160358_5160799_-|nucleoside-deaminase
MVRSALDAAALSGTDDVPIGAVVFDPEGVELARAANRREADSDPTAHAEVLALRAAARAFGDGWRLPGCTIAVTVEPCTMCAGAITLSRVDAVVFGAWEPKTGAVGSLWDVVRDPRLSHRPQVKGGVLEAECRALMVDFFATRRHP
>NZ_CP049836.1|WP_058250986.1|5160842_5161385_-|tRNA-adenosine-deaminase-associated-protein
MAGAGFGKSGSNAQDVDDDIDGFAVAVVRDESGWKVTAMKPSALSDLEDAETQLRELRSAGAVFGLLDVDDEFFIIVRPSPTGARLLISDATASVDYDIAVDALDALNIEVPDIDPDELDQIDPWEEGDLGLLADLGLPDAVMSIIVGDTDLYADEQLGMIAARLGFADELGKVLDSLGH
>NZ_CP049836.1|WP_058250985.1|5161463_5162438_+|prephenate-dehydrogenase
MTAAPSSPAVALSTPVCVLGLGLIGGSLLRALHDAGHEAFGYNRSATTVDAAIGDGYDASADLVATLERAASSDALLVLATPVTTIGPLVTAIAENAPGLLVTDVISVKQEVERLLADLHPGGRYVGGHPMAGTSSSGWAATDATLFDGAMWAVTTTDHTPADDWLTVAALAVTVGSRVVPVAPDAHDRAVAAISHLPHLTAAATAAVGAGESDLALRLAAGSFRDGTRVAGTAPALQRAMIEANGIAVLNVLSETIDRLTAVRDELRDHGTAEVLVDDGHRARKAYEQLHSGAAEVISGVTVGDDGWQQELRRQAHQGRVWVG
>NZ_CP049836.1|WP_082652894.1|5162473_5163028_-|putative-glycolipid-binding-domain-containing-protein
MLTWRGEDTDRLEQVRLVVSGARLKAYGRIIAAATADHEAFSASYELQTTDAGVVKRLTVHLVRTDGETQFGITRDDEGTWLIRRPDGETTRSDFDGAEDVDLALSPMFNALPIRRRALSASTPGAVEIPVAYMYLPSGDVKPATMSYTPGTDGFRVVSPLATTTITVDENNFVVDYPGLARRV
>NZ_CP049836.1|WP_068972623.1|5163188_5163974_-|hypothetical-protein
MGQPYGGPNPGAHDPRRRDGGGSQTGGSPRDLYGQPVAPQLYPPLGYAADGTPMFRPGQPTNTELTMAERAERAEAERVATAEREAESADGRPGSRIRKVPTATLILTLGVVVLLVVAFVGFLGLREEAPQDRFADSPTVTDTMPIPRTFEPPSLTPPDPGQRLPGQPGERIDPQNKPVTYEATIDGQATILYVDDNGLRSEFAPTNPWTVQFTGGVNPLRLLVIAGTGSSVSCSITVAGEVVVEDTVTPSSTRRTASCIA
>NZ_CP049836.1|WP_068972624.1|5164592_5166719_+|AAA-family-ATPase
MFALPDSLSPKNDPALVADDTRHFASITTNLRRTLAYADERLQHLRREAGGRGRRAVDRDMEIHQLGARIRSLRRFGLDLCLGRLVRDDGEILYIGRLGLTDAAGETLLVDWRTPLAAPFFAATRRDPMGLVSRRRYRWTHGRITDYWDEVFVDDPAVLTSHAALDEQSAFLADLGASRSPRMRDVLGTIATDQDAIIRADSHRTLVVDGGPGTGKTVVALHRAAYLVYADPRLAGHRGGLLVVGPHRPYLAYVADVLPSLGEESVQTCTLADLVVEGDSATTEADVDVARLKSSARMVEAVEPAVKFYEQPPTTPFVVETPWTETTLTAGDWADAFDAAERGTAHNEARDEVWEELVSIIASRHDDDVPQHALHRALAANDELAAAFSRAWPILDAAEIVGDLWSVPAFLRMCAPWLPPGEVRALQRSVPDAWTDADLPILDRAHRRIGDPAASARRRRQRTDLARERERIDQVVDDLIAAEVHDDGEGLMTMLRHENLRHNLGDGSVSETARSLSGPFAHIVVDEAQELTDAQWQMLIDRCPSKSFTVVGDRAQARRGFPESWAERLRRVGLRDVTSAGLTINYRTPEEIMDAAAPVIRAALPDANVPTSVRRAGIPVTYGDRADLDTVVDDWISTHRDGIACVIGEPGFAGTDRVRSLTPTLAKGLEFDLVVLVDPDAFGAGTEGAVDRYVSMTRATQQLVILRT
>NZ_CP049836.1|WP_065631212.1|5166914_5167301_-|hypothetical-protein
MAGQRNCDSGVTAGRLSKANEFFDAAELLVDEMPNAAGDLYVDAGIAAADAICCVRLGTHSNTGNHSEAVALLRRADSGSERHLNTLLNLKNKVAYTHQDLSSAELKKMNRAAEHLVEAAKQAVAARG
>NZ_CP049836.1|WP_065631213.1|5167300_5167939_-|nucleotidyltransferase-domain-containing-protein
MQLHKPFATVTPTLDGDVLDVLASADETFTITQVQRILTSASGEGIRKVLNRLTKQGVVLHDEVGRTHTYRLNTEHLAADAIMAVSRLNSTFLRRLEQHLSSWGSTLRYAAVFGSAATGRMALDSDIDLFLVRGPDSSDDGDDLWEQRVTELARLITAWTGNDGRIVEYAEQEFHAAASAGEAVFDDVSKQGLTVAGTRSWFNAQLRSVRRP
>NZ_CP049836.1|WP_165630743.1|5168377_5169445_+|histidinol-phosphate-transaminase
MSLRIRPDLDDLPVYVPGKTFPGAVKLASNEVTEGPLPSVVEAIGAAAAAVNRYPDNGMVELTAALAKSLGVTEDEVQVGCGSVILCQNLILVTSGPGDEVVFGWRSFETYPLATRVAGATPVQVPLTGDLTYDLRAMADAITDRTRLIFVCNPNNPTGTVVEAADLREFLQNVPSDVIVALDEAYFEYLRLPSSQAYDALELRREFRNLVVLRTFSKAYGLAGLRVGYAIADPEVITALGKVHVPFSVSSVAQAAALASLDAGDLLLARTDAVVAERARVTARLRDAGYRVPDSQANFVWLDLGAASMDFARACVDAGVVVRPFDGDGVRVTVTNAAEDDVFLQFAESWDGPRS

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Crispr_ID: NZ_CP049836_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049836_8

5159994-5160196

Orphan

Consensus_repeat	Method
TCGTTGATCTTGTCCTTGGCGGT	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_CP049836_8

>merge|NZ_CP049836|8|5159994-5160196|CRISPRCasFinder
TCGTTGATCTTGTCCTTGGCGGTACTGAACGCCTCTTGGACCTTCTCGTTCTCGGCGAGATCGTTGAGCTTGTCCTTGGCGGTGTCCAGCGCATCCTGGACCTGCTTGCTCTCGACGAACTCGTCGATCTTGTCGCGCGCGGTACCCAGCGCCTCCTGGACCTTGCCGCTCTCGGCGAGCTCGTTGATCTTGGCCTTGGCGGT

>NZ_CP049836|8|8|5159994-5160196|CRISPRCasFinder
TCGTTGATCTTGTCCTTGGCGGT	ACTGAACGCCTCTTGGACCTTCTCGTTCTCGGCGAGA
TCGTTGAGCTTGTCCTTGGCGGT	GTCCAGCGCATCCTGGACCTGCTTGCTCTCGACGAAC
TCGTCGATCTTGTCGCGCGCGGT	ACCCAGCGCCTCCTGGACCTTGCCGCTCTCGGCGAGC
TCGTTGATCTTGGCCTTGGCGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049836.1\|WP_068972624.1\|5164592_5166719_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226482
NZ_CP049836.1\|WP_068972620.1\|5153724_5155191_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|341259
NZ_CP049836.1\|WP_058250986.1\|5160842_5161385_-\|tRNA-adenosine-deaminase-associated-protein	unknown	unknown	gnl\|CDD\|274869
NZ_CP049836.1\|WP_082652894.1\|5162473_5163028_-\|putative-glycolipid-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|377662
NZ_CP049836.1\|WP_058251136.1\|5160358_5160799_-\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|223663
NZ_CP049836.1\|WP_058250995.1\|5148984_5150307_-\|PucR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225306
NZ_CP049836.1\|WP_065631212.1\|5166914_5167301_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049836.1\|WP_058250988.1\|5159585_5159795_-\|CsbD-family-protein	unknown	unknown	gnl\|CDD\|283241
NZ_CP049836.1\|WP_068972621.1\|5157959_5158628_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370360
NZ_CP049836.1\|WP_058250991.1\|5156983_5157598_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|341258
NZ_CP049836.1\|WP_058250989.1\|5158651_5159356_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370360
NZ_CP049836.1\|WP_068972618.1\|5150303_5151725_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224154
NZ_CP049836.1\|WP_058250985.1\|5161463_5162438_+\|prephenate-dehydrogenase	unknown	unknown	gnl\|CDD\|235824
NZ_CP049836.1\|WP_068972625.1\|5169463_5170441_-\|esterase-family-protein	unknown	unknown	gnl\|CDD\|223700
NZ_CP049836.1\|WP_058250992.1\|5155463_5156969_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377380
NZ_CP049836.1\|WP_165630933.1\|5147223_5148963_+\|SulP-family-inorganic-anion-transporter	unknown	unknown	gnl\|CDD\|223732
NZ_CP049836.1\|WP_065631213.1\|5167300_5167939_-\|nucleotidyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|143393
NZ_CP049836.1\|WP_165630742.1\|5151721_5153584_-\|DUF3556-domain-containing-protein	unknown	unknown	gnl\|CDD\|371888
NZ_CP049836.1\|WP_165630743.1\|5168377_5169445_+\|histidinol-phosphate-transaminase	unknown	unknown	gnl\|CDD\|179559
NZ_CP049836.1\|WP_068972623.1\|5163188_5163974_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP049836.1\|WP_068972624.1\|5164592_5166719_+\|AAA-family-ATPase	gnl\|CDD\|226482	COG3973, COG3973, Superfamily I DNA and RNA helicases [General function prediction only].	1.51669e-43
NZ_CP049836.1\|WP_068972620.1\|5153724_5155191_-\|AMP-binding-protein	gnl\|CDD\|341259	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD. This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions.	5.64068e-162
NZ_CP049836.1\|WP_058250986.1\|5160842_5161385_-\|tRNA-adenosine-deaminase-associated-protein	gnl\|CDD\|274869	TIGR03941, conserved_hypothetical_protein, putative tRNA adenosine deaminase-associated protein. This model describes a protein family about 200 amino acids in length with only five invariant residues, including an Arg, a Ser-Asp pair, and two Gly residues. Members always are found exclusively in Actinobacteria, and always adjacent to homologs of TadA, a tRNA-specific adenosine deaminase from Escherichia coli. Homology, phyletic pattern, and gene neighborhood together suggest a housekeeping function in tRNA metabolism. [Unknown function, General].	2.80604e-51
NZ_CP049836.1\|WP_082652894.1\|5162473_5163028_-\|putative-glycolipid-binding-domain-containing-protein	gnl\|CDD\|377662	pfam06475, Glycolipid_bind, Putative glycolipid-binding. This family has a novel fold known as a spiral beta-roll, consisting of a 15-stranded beta sheet wrapped around a single alpha helix. It forms dimers. It has some structural similarity to the E. coli lipoprotein localization factors LolA and LolB. Its structure suggests that it may have a role in glycolipid binding. Its genomic context supports a role in glycolipid metabolism.	2.33006e-54
NZ_CP049836.1\|WP_058251136.1\|5160358_5160799_-\|nucleoside-deaminase	gnl\|CDD\|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	5.04118e-55
NZ_CP049836.1\|WP_058250995.1\|5148984_5150307_-\|PucR-family-transcriptional-regulator	gnl\|CDD\|225306	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism].	2.18115e-16
NZ_CP049836.1\|WP_058250988.1\|5159585_5159795_-\|CsbD-family-protein	gnl\|CDD\|283241	pfam05532, CsbD, CsbD-like. CsbD is a bacterial general stress response protein. It's expression is mediated by sigma-B, an alternative sigma factor. The role of CsbD in stress response is unclear.	0.000109463
NZ_CP049836.1\|WP_068972621.1\|5157959_5158628_+\|hypothetical-protein	gnl\|CDD\|370360	pfam09203, MspA, MspA. MspA is a membrane porin produced by Mycobacteria, allowing hydrophilic nutrients to enter the bacterium. The protein forms a tightly interconnected octamer with eightfold rotation symmetry that resembles a goblet and contains a central channel. Each subunit fold contains a beta-sandwich of Ig-like topology and a beta-ribbon arm that forms an oligomeric transmembrane barrel.	1.9028e-13
NZ_CP049836.1\|WP_058250991.1\|5156983_5157598_-\|AMP-binding-protein	gnl\|CDD\|341258	cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase. The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters.	6.03511e-07
NZ_CP049836.1\|WP_058250989.1\|5158651_5159356_+\|hypothetical-protein	gnl\|CDD\|370360	pfam09203, MspA, MspA. MspA is a membrane porin produced by Mycobacteria, allowing hydrophilic nutrients to enter the bacterium. The protein forms a tightly interconnected octamer with eightfold rotation symmetry that resembles a goblet and contains a central channel. Each subunit fold contains a beta-sandwich of Ig-like topology and a beta-ribbon arm that forms an oligomeric transmembrane barrel.	7.63707e-28
NZ_CP049836.1\|WP_068972618.1\|5150303_5151725_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224154	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism].	1.33715e-84
NZ_CP049836.1\|WP_058250985.1\|5161463_5162438_+\|prephenate-dehydrogenase	gnl\|CDD\|235824	PRK06545, PRK06545, prephenate dehydrogenase; Validated.	4.5246e-100
NZ_CP049836.1\|WP_058250992.1\|5155463_5156969_+\|hypothetical-protein	gnl\|CDD\|377380	pfam04545, Sigma70_r4, Sigma-70, region 4. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.	2.64273e-08
NZ_CP049836.1\|WP_165630933.1\|5147223_5148963_+\|SulP-family-inorganic-anion-transporter	gnl\|CDD\|223732	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism].	6.44785e-109
NZ_CP049836.1\|WP_065631213.1\|5167300_5167939_-\|nucleotidyltransferase-domain-containing-protein	gnl\|CDD\|143393	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. S. aureus KNTase is a plasmid encoded enzyme which confers resistance to a wide range of aminoglycoside antibiotics which have a 4'- or 4''-hydroxyl group in the equatorial position, such as kanamycin A. This enzyme transfers a nucleoside monophosphate group from a nucleotide (ATP,GTP, or UTP) to the 4'-hydroxyl group of kanamycin A. This enzyme is a homodimer, having two NT active sites. The nucleotide and antibiotic binding sites of each active site include residues from each monomer. Included in this subgroup is Escherichia coli AadA5 which confers resistance to the antibiotic spectinomycin and is a putative aminoglycoside-3'-adenylyltransferase. It is part of the aadA5 cassette of a class 1 integron. This subgroup also includes Haemophilus influenzae HI0073 which forms a 2:2 heterotetramer with an unrelated protein HI0074. Structurally HI0074 is related to the substrate-binding domain of S. aureus KNTase. The genes encoding HI0073 and HI0074 form an operon. Little is known about the substrate specificity or function of two-component NTs. The characterized members of this subgroup may not be representive of the function of this subgroup. This subgroup belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, co-ordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. These carboxylate residues are conserved in this subgroup.	0.00028295
NZ_CP049836.1\|WP_165630742.1\|5151721_5153584_-\|DUF3556-domain-containing-protein	gnl\|CDD\|371888	pfam12077, DUF3556, Transmembrane protein of unknown function (DUF3556). This family of transmembrane proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 576 to 592 amino acids in length.	0
NZ_CP049836.1\|WP_165630743.1\|5168377_5169445_+\|histidinol-phosphate-transaminase	gnl\|CDD\|179559	PRK03321, PRK03321, putative aminotransferase; Provisional.	0
NZ_CP049836.1\|WP_068972625.1\|5169463_5170441_-\|esterase-family-protein	gnl\|CDD\|223700	COG0627, COG0627, Predicted esterase [General function prediction only].	1.01229e-51

>NZ_CP049836.1|WP_058250988.1|5159585_5159795_-|CsbD-family-protein
MGTTDDAKNKAEELKGRGKEAAGSLTDDQDLKNEGKGDQAQAEGKQKITDAADAVKGKIDDVKDKLTGH
>NZ_CP049836.1|WP_058250989.1|5158651_5159356_+|hypothetical-protein
MTRRIGAPMTVTKRRATRTRIIASTTAVACAALIPVLDAAPAHADTTVQLPGQSVTKKLKDGTTVTITRSKESARITPSMGATPLHRNAWVSGKYVVTTSDPAAKIGVGAGYIAGCQLTLGGNSNSRAGATAPNFDLQSATTTAETGAGVTIGPGQAVNYVINDREYKDAFGAAGHSSSISFSGGKGTLAYTNETMMVNGCAGYAQARSYAKVSITTDNVSQSIAVYGKPFSMG
>NZ_CP049836.1|WP_068972621.1|5157959_5158628_+|hypothetical-protein
MTQRTLRAVGLSALIGGSVTAALLAGAASAGADTFVRLPGGTAKGEGVQIVRSEESARVSTSMAANGVSRTTWVSGQITLYAPNLKPAKAGPSVGAAGETTLPGSNGTATNGAAATLSTGYIIGCQVNIKGLQGGLSGSLTPTAPSLSGTLTVPLAAGDVTFVVLNTKNIEKAGTYHLGYDDAQIDVQNCGGYAQARAFTTIETTGEVHQKVNLYGKPFSIG
>NZ_CP049836.1|WP_058250991.1|5156983_5157598_-|AMP-binding-protein
MRTGDAVIDFERFYESVEWMAEQLVSCGVRAGSRVGLVIRTGWEFVLAWYSLLEVDAVTVPIVLGPANEPAHSCEIGFVLAHVDQCTEVEDLVEAAVPRSHCRQMYRVGDEFVLAALRTADMLRNEGGLVDLGHEPQAATGQLIAEAERMVADVGLRRGEYVSFEGDLGTRDTMVRILACASAGACVAVDAPYGEPHWGAPSTR
>NZ_CP049836.1|WP_058250992.1|5155463_5156969_+|hypothetical-protein
MTAHANGPLPSRRSPDDGRALDAVAAFDAGLSDQERRVLTERVYAASPRTQSEVADLLGLSRERVTQIDRSTRHRLRSLIEADPALADLSAMINRRAAPVADAAALMADSTLAGTPVGGVEAPCWRVVAAASGLRTSENWIIRGSLRSVAEFTKSAVEAAARPGEAASVITIADHLGLSGDSAARWLLRAGYELLDGHAIAARSTTGEIVVAALSIRGAPLTFDDIIDATSAIPRAHNSIRNALASDVRIVRTDRTRYGLAKWGLPRYEPVHLQIDAILSDHDGAVPLDDVIATIRGRHDVSEATIRSYAGAGEFQIRDGIVTRRERPHRPRRTPGRTRGLYREDDVVHWATTITPAQCRGTGFNIPSALAGLLGIGPGSPVTLETALGTQAFTWASVQARSGSIKRFIDELELEPGTPVFLDFGPHTFTVRRAEQATASSAADILTRIGRQPARLTRTRLLQVLAESLWLPTQSGINDVVELLGRRRETDLADRVAATLR
>NZ_CP049836.1|WP_068972620.1|5153724_5155191_-|AMP-binding-protein
MTSTYFAWDLTHRADAPCVRDDVVALDYAGFARRVEGVAEQLGRAGVRPGDVVATFLPNRIELLVTLMAAWRIGAVATPVNPAFTPEEAEYQLADSGARVVIGTRAAELRSDRARFDVEELATAPSADWRGSLSPAAGDDALLIYTSGSTGRPKGVRLSHDNLHYMASTMVTHFGLTAADHALLVLPLFHVNAICVSFLAPMLAGGQLSITGKFSPSRFFDDVARLTPTYFSAVPTIYALLVSQDGLTAEATGSLRFAVCGAAPISRELLDRVEGAFGIPVVEGYGLTEGTCASACNPVVGVRKLGTVGPALPGQRIAIVDEQGTEVPTGEIGEVVISGPNVMRGYLNRPEATASTIVGGRLHTGDVGRLDEDGYLTLVDRIKDLIIRGGENIYPKEIENALATHPDVLECAVVGAPDELYGELPVAFVVAYPHRGVDAEKLADHLVGRLAKIKQPSTIHVVDQLPRNPVGKIDKPALRSDLRSPQPI
>NZ_CP049836.1|WP_165630742.1|5151721_5153584_-|DUF3556-domain-containing-protein
MGLTQPDFPQVDPETFLQRPFFDRIRVLGAHWADHGFGTPKMVHLIYLMKVFVFYGGVGIVLATLTSGLNPLHVTEWWNQPIVYQKLVLWTVLVEVLGIGGSWGPLAGHFKPMTGGFLYWLRPQTIRLPPWPGKVPFTKGDSRTAFDIAVYALILANLAVAIALPGIASSSLDSVVADNQGLVNPVLMYPLIALFVVIGLRDKVIFIAARSEQYLPAMIFFGVLPFVDMILALKLLIVSVWVGAGISKLGHHFSMVIPPMLSNTPWLPSKRIKRAHYRDFPEDMRPSKLAGGVGHVLGTIVEVVTPLVLLFSTSKSLTVAAVVLMVCFHFFILSTFPLAVPLEWNLLFAYASVFLFLGFPAWDGYALTDTSMPWAMVLIAAALYFFPVLGNLRPDLVSFLPSMRQYAGNWASATWAFAPGAEEKLDEHIVRPAKNTRTQLLASYPADVADVVMHQLLAWRSMHSQGRALYSLMIRHLGSDIDSYTLREAEFSCNSLVAFNFGDGHLHDERLIAALQKRCGFAPGEFTVAWIESQPIHRGTQRFKVIDAALGVIETGTYRVVDAVNEQPWLPNGPIPFQVDWTLDVDARRAVTDPEVVHEPKMRSDDRSATPVRLTDQAPQ
>NZ_CP049836.1|WP_068972618.1|5150303_5151725_-|NAD(P)/FAD-dependent-oxidoreductase
MTTAVVVGGGPNGLAAALHLARNGVDVQVLEAAEVVGGGARSGELTVPGVIHDHCSAFHPLGVGSPFWAEVGLERYGLVWKWPDADCAHPLDSGDAGLLFRSIGATAAGLGADGLRWRAMFGDLAEHFDDLGDDLLRPVVHVPGHPIRLASFGPRAILPATVLARWFRTERARALYGGIAAHLFSRLDRPLTASLGLMIAASGHRYGWPVAEGGSGAITAAIVGALRDSGGKIETGVRVSSRADLPRADITLLDLSPAQVLSIFGDEMPARIRRSYRRYRIGSSAYKVDFAIDGDIPWSNPDCLRAGTVHLGGSFAEIAHTERQRAAGVMVPRPFVLLGQQYIADPGRSAGGVNPIYAYAHVPRGFDGDATEQIVAQIERFAPGFRDRIVATVSTGTEQLHSSNANFAGGDIIGGANDGLQMVLRPRAALDPYAIGVPGVYICSQASPPGAGIHGLCGYHAAESALRYARSRR
>NZ_CP049836.1|WP_058250995.1|5148984_5150307_-|PucR-family-transcriptional-regulator
MTASRPSRALWTAGDAARDRLAGVPAAAGSELLEQAAMIAKTLHENVSDIVTELSAMMAREIDQLDTDPKLVELLEASVHGNVSTIIHVLANDIPIEHLQPTTAAVEYALRLAQRDVPSNSLVRAYHLGQNSVMRECYRLVEDLDLDAGQSMALTRHISDVLSGYIDWISLYVFEAYEDERRRWLGVEGNVQSAAIHSFLDGAESDERAFESETGYALDRRHLALILWSFDDEPRELVALTHAARELGTRVGGGSPPIVTAIDRSTVWAWIPLVGRDVTDGSSVTAVRSTVPAGIRVAVGLPASGARGFRRTHEQALAAYSVATMPGGAASRVIGFGDRGVAVVSLLAQDLESTRAWVHEVLGGLAEDSPNANMLRETLSVYFATKESHLHTAERLNLHRNTVKYRVGKALAEVPADRDRLDLALALTVCEFLGPVIFAH
>NZ_CP049836.1|WP_165630933.1|5147223_5148963_+|SulP-family-inorganic-anion-transporter
MMQPETVSRFLPGLGVLRSYERSWLKGDIVAGIVLTALLIPAGMGYAEVAGLPPVTGLYATVIPLLVYAVVGPSRILVLGPDSSLAPIIAASIIPLAAFDAERIALAGVLAIEVGLVLLIGGLLRLGFVTDLLSKPIRIGYLNGIALVVVLSQLPKLLGFSVDGDSVLQEAIDIVRGVTSGEAELLPTVIGVSCLVLIFALKFWRKAIPGVLVAVVASIIAVAVFGWSDDLPVVGAMPRGFPSPSLEGVTLDDVISLIGPAVGIALIAFADTSVLSRTFAARAGDQVNGSQEMAAIGTANIATGFLSGFAISASSSRTPVAEQAGAKSQLAAVVGALLIVVFIFVAPGVTAYLPSAALAAVVIAAAISLIDISGVVALFRANWVEGALSIAAFLGVALIGVLQGILVAIGLSFIAFVNLAWRPYRTELGRVPGLRGYHDVTRHPEAERIDGVLIIRFDAPLFFANGGMFDDYVRGKVREARTAGRELHTVIIAAEPIVDIDATAVDELVELDDYLRSHGITLVFAEMKDPVRDILRRYDLRVDGRPRFDDTHFAPTTGAKIDEITGQPRRDVQKSNDGI
>NZ_CP049836.1|WP_058251136.1|5160358_5160799_-|nucleoside-deaminase
MVRSALDAAALSGTDDVPIGAVVFDPEGVELARAANRREADSDPTAHAEVLALRAAARAFGDGWRLPGCTIAVTVEPCTMCAGAITLSRVDAVVFGAWEPKTGAVGSLWDVVRDPRLSHRPQVKGGVLEAECRALMVDFFATRRHP
>NZ_CP049836.1|WP_058250986.1|5160842_5161385_-|tRNA-adenosine-deaminase-associated-protein
MAGAGFGKSGSNAQDVDDDIDGFAVAVVRDESGWKVTAMKPSALSDLEDAETQLRELRSAGAVFGLLDVDDEFFIIVRPSPTGARLLISDATASVDYDIAVDALDALNIEVPDIDPDELDQIDPWEEGDLGLLADLGLPDAVMSIIVGDTDLYADEQLGMIAARLGFADELGKVLDSLGH
>NZ_CP049836.1|WP_058250985.1|5161463_5162438_+|prephenate-dehydrogenase
MTAAPSSPAVALSTPVCVLGLGLIGGSLLRALHDAGHEAFGYNRSATTVDAAIGDGYDASADLVATLERAASSDALLVLATPVTTIGPLVTAIAENAPGLLVTDVISVKQEVERLLADLHPGGRYVGGHPMAGTSSSGWAATDATLFDGAMWAVTTTDHTPADDWLTVAALAVTVGSRVVPVAPDAHDRAVAAISHLPHLTAAATAAVGAGESDLALRLAAGSFRDGTRVAGTAPALQRAMIEANGIAVLNVLSETIDRLTAVRDELRDHGTAEVLVDDGHRARKAYEQLHSGAAEVISGVTVGDDGWQQELRRQAHQGRVWVG
>NZ_CP049836.1|WP_082652894.1|5162473_5163028_-|putative-glycolipid-binding-domain-containing-protein
MLTWRGEDTDRLEQVRLVVSGARLKAYGRIIAAATADHEAFSASYELQTTDAGVVKRLTVHLVRTDGETQFGITRDDEGTWLIRRPDGETTRSDFDGAEDVDLALSPMFNALPIRRRALSASTPGAVEIPVAYMYLPSGDVKPATMSYTPGTDGFRVVSPLATTTITVDENNFVVDYPGLARRV
>NZ_CP049836.1|WP_068972623.1|5163188_5163974_-|hypothetical-protein
MGQPYGGPNPGAHDPRRRDGGGSQTGGSPRDLYGQPVAPQLYPPLGYAADGTPMFRPGQPTNTELTMAERAERAEAERVATAEREAESADGRPGSRIRKVPTATLILTLGVVVLLVVAFVGFLGLREEAPQDRFADSPTVTDTMPIPRTFEPPSLTPPDPGQRLPGQPGERIDPQNKPVTYEATIDGQATILYVDDNGLRSEFAPTNPWTVQFTGGVNPLRLLVIAGTGSSVSCSITVAGEVVVEDTVTPSSTRRTASCIA
>NZ_CP049836.1|WP_068972624.1|5164592_5166719_+|AAA-family-ATPase
MFALPDSLSPKNDPALVADDTRHFASITTNLRRTLAYADERLQHLRREAGGRGRRAVDRDMEIHQLGARIRSLRRFGLDLCLGRLVRDDGEILYIGRLGLTDAAGETLLVDWRTPLAAPFFAATRRDPMGLVSRRRYRWTHGRITDYWDEVFVDDPAVLTSHAALDEQSAFLADLGASRSPRMRDVLGTIATDQDAIIRADSHRTLVVDGGPGTGKTVVALHRAAYLVYADPRLAGHRGGLLVVGPHRPYLAYVADVLPSLGEESVQTCTLADLVVEGDSATTEADVDVARLKSSARMVEAVEPAVKFYEQPPTTPFVVETPWTETTLTAGDWADAFDAAERGTAHNEARDEVWEELVSIIASRHDDDVPQHALHRALAANDELAAAFSRAWPILDAAEIVGDLWSVPAFLRMCAPWLPPGEVRALQRSVPDAWTDADLPILDRAHRRIGDPAASARRRRQRTDLARERERIDQVVDDLIAAEVHDDGEGLMTMLRHENLRHNLGDGSVSETARSLSGPFAHIVVDEAQELTDAQWQMLIDRCPSKSFTVVGDRAQARRGFPESWAERLRRVGLRDVTSAGLTINYRTPEEIMDAAAPVIRAALPDANVPTSVRRAGIPVTYGDRADLDTVVDDWISTHRDGIACVIGEPGFAGTDRVRSLTPTLAKGLEFDLVVLVDPDAFGAGTEGAVDRYVSMTRATQQLVILRT
>NZ_CP049836.1|WP_065631212.1|5166914_5167301_-|hypothetical-protein
MAGQRNCDSGVTAGRLSKANEFFDAAELLVDEMPNAAGDLYVDAGIAAADAICCVRLGTHSNTGNHSEAVALLRRADSGSERHLNTLLNLKNKVAYTHQDLSSAELKKMNRAAEHLVEAAKQAVAARG
>NZ_CP049836.1|WP_065631213.1|5167300_5167939_-|nucleotidyltransferase-domain-containing-protein
MQLHKPFATVTPTLDGDVLDVLASADETFTITQVQRILTSASGEGIRKVLNRLTKQGVVLHDEVGRTHTYRLNTEHLAADAIMAVSRLNSTFLRRLEQHLSSWGSTLRYAAVFGSAATGRMALDSDIDLFLVRGPDSSDDGDDLWEQRVTELARLITAWTGNDGRIVEYAEQEFHAAASAGEAVFDDVSKQGLTVAGTRSWFNAQLRSVRRP
>NZ_CP049836.1|WP_165630743.1|5168377_5169445_+|histidinol-phosphate-transaminase
MSLRIRPDLDDLPVYVPGKTFPGAVKLASNEVTEGPLPSVVEAIGAAAAAVNRYPDNGMVELTAALAKSLGVTEDEVQVGCGSVILCQNLILVTSGPGDEVVFGWRSFETYPLATRVAGATPVQVPLTGDLTYDLRAMADAITDRTRLIFVCNPNNPTGTVVEAADLREFLQNVPSDVIVALDEAYFEYLRLPSSQAYDALELRREFRNLVVLRTFSKAYGLAGLRVGYAIADPEVITALGKVHVPFSVSSVAQAAALASLDAGDLLLARTDAVVAERARVTARLRDAGYRVPDSQANFVWLDLGAASMDFARACVDAGVVVRPFDGDGVRVTVTNAAEDDVFLQFAESWDGPRS
>NZ_CP049836.1|WP_068972625.1|5169463_5170441_-|esterase-family-protein
MSRRLIAGLVCLMVGILSTPAIADAAPKQVARIAKSEKLSALRTDIWVFSPAMNERIKLSVLTPVGGSTPRSTVYMLDGAGAEGEVSDWITKGRAGRFFADKNVNVVLPTGGKGTFYTDWQKKDAALGKPMWETFLTRELPPLIDERFDGNGRNAVIGLSMGGQAAFSLAIRHPEMYTGVASLSGCPPVSGPVNEAYVRTTVGRDGGDATNMWGPFGSAGWRAHDPSLHLDRLRGKNIFIAAGSGAIGPLDLQRQIEPDEGPRDVVTASSSALELGAYRCSLEFAITMRAAGVPYTDGFRLIGTHTWAYWERDLAALWPTIGRGL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP049836_4	4.1\|2861025\|50\|NZ_CP049836\|CRISPRCasFinder	2861025-2861074	50	NZ_CP049836.1	2861062-2861111	0	1.0
NZ_CP049836_1	1.1\|806074\|29\|NZ_CP049836\|CRISPRCasFinder	806074-806102	29	NZ_CP049836.1	2087634-2087662	1	0.966
NZ_CP049836_1	1.1\|806074\|29\|NZ_CP049836\|CRISPRCasFinder	806074-806102	29	NZ_CP049836.1	4102599-4102627	1	0.966
NZ_CP049836_1	1.1\|806074\|29\|NZ_CP049836\|CRISPRCasFinder	806074-806102	29	NZ_CP049836.1	4102642-4102670	1	0.966
NZ_CP049836_1	1.1\|806074\|29\|NZ_CP049836\|CRISPRCasFinder	806074-806102	29	NZ_CP049836.1	695406-695434	1	0.966
NZ_CP049836_1	1.1\|806074\|29\|NZ_CP049836\|CRISPRCasFinder	806074-806102	29	NZ_CP049836.1	1736187-1736215	1	0.966
NZ_CP049836_1	1.1\|806074\|29\|NZ_CP049836\|CRISPRCasFinder	806074-806102	29	NZ_CP049836.1	4350176-4350204	1	0.966
NZ_CP049836_1	1.1\|806074\|29\|NZ_CP049836\|CRISPRCasFinder	806074-806102	29	NZ_CP049836.1	4355598-4355626	1	0.966
NZ_CP049836_1	1.1\|806074\|29\|NZ_CP049836\|CRISPRCasFinder	806074-806102	29	NZ_CP049836.1	1458264-1458292	2	0.931
NZ_CP049836_1	1.1\|806074\|29\|NZ_CP049836\|CRISPRCasFinder	806074-806102	29	NZ_CP049836.1	1458332-1458360	2	0.931
NZ_CP049836_1	1.1\|806074\|29\|NZ_CP049836\|CRISPRCasFinder	806074-806102	29	NZ_CP049836.1	2087757-2087785	2	0.931
NZ_CP049836_1	1.1\|806074\|29\|NZ_CP049836\|CRISPRCasFinder	806074-806102	29	NZ_CP049836.1	1832-1860	2	0.931
NZ_CP049836_1	1.1\|806074\|29\|NZ_CP049836\|CRISPRCasFinder	806074-806102	29	NZ_CP049836.1	1310482-1310510	2	0.931

1. spacer 4.1|2861025|50|NZ_CP049836|CRISPRCasFinder matches to position: 2861062-2861111, mismatch: 0, identity: 1.0

tgatgccggcgccgggagcgaagcgagcgggccgaattgatgccggcgcc	CRISPR spacer
tgatgccggcgccgggagcgaagcgagcgggccgaattgatgccggcgcc	Protospacer
**************************************************

2. spacer 1.1|806074|29|NZ_CP049836|CRISPRCasFinder matches to position: 2087634-2087662, mismatch: 1, identity: 0.966

cccccgctggttgagccggccccgagcgg	CRISPR spacer
ccaccgctggttgagccggccccgagcgg	Protospacer
** **************************

3. spacer 1.1|806074|29|NZ_CP049836|CRISPRCasFinder matches to position: 4102599-4102627, mismatch: 1, identity: 0.966

cccccgctggttgagccggccccgagcgg	CRISPR spacer
cccccgctggttgagccggcaccgagcgg	Protospacer
******************** ********

4. spacer 1.1|806074|29|NZ_CP049836|CRISPRCasFinder matches to position: 4102642-4102670, mismatch: 1, identity: 0.966

cccccgctggttgagccggccccgagcgg	CRISPR spacer
cccccgctggttgagccggcaccgagcgg	Protospacer
******************** ********

5. spacer 1.1|806074|29|NZ_CP049836|CRISPRCasFinder matches to position: 695406-695434, mismatch: 1, identity: 0.966

cccccgctggttgagccggccccgagcgg	CRISPR spacer
cccccgctggttgagccggcaccgagcgg	Protospacer
******************** ********

6. spacer 1.1|806074|29|NZ_CP049836|CRISPRCasFinder matches to position: 1736187-1736215, mismatch: 1, identity: 0.966

cccccgctggttgagccggccccgagcgg	CRISPR spacer
cccccgctggttgagccggcaccgagcgg	Protospacer
******************** ********

7. spacer 1.1|806074|29|NZ_CP049836|CRISPRCasFinder matches to position: 4350176-4350204, mismatch: 1, identity: 0.966

cccccgctggttgagccggccccgagcgg	CRISPR spacer
cctccgctggttgagccggccccgagcgg	Protospacer
**.**************************

8. spacer 1.1|806074|29|NZ_CP049836|CRISPRCasFinder matches to position: 4355598-4355626, mismatch: 1, identity: 0.966

cccccgctggttgagccggccccgagcgg	CRISPR spacer
cccccgctggttgagccggcaccgagcgg	Protospacer
******************** ********

9. spacer 1.1|806074|29|NZ_CP049836|CRISPRCasFinder matches to position: 1458264-1458292, mismatch: 2, identity: 0.931

cccccgctggttgagccggccccgagcgg	CRISPR spacer
ccaccgctggttgagccggcaccgagcgg	Protospacer
** ***************** ********

10. spacer 1.1|806074|29|NZ_CP049836|CRISPRCasFinder matches to position: 1458332-1458360, mismatch: 2, identity: 0.931

cccccgctggttgagccggccccgagcgg	CRISPR spacer
ccaccgctggttgagccggcaccgagcgg	Protospacer
** ***************** ********

11. spacer 1.1|806074|29|NZ_CP049836|CRISPRCasFinder matches to position: 2087757-2087785, mismatch: 2, identity: 0.931

cccccgctggttgagccggccccgagcgg	CRISPR spacer
ccaccactggttgagccggccccgagcgg	Protospacer
** **.***********************

12. spacer 1.1|806074|29|NZ_CP049836|CRISPRCasFinder matches to position: 1832-1860, mismatch: 2, identity: 0.931

cccccgctggttgagccggccccgagcgg	CRISPR spacer
ccaccgctggttgagccggcaccgagcgg	Protospacer
** ***************** ********

13. spacer 1.1|806074|29|NZ_CP049836|CRISPRCasFinder matches to position: 1310482-1310510, mismatch: 2, identity: 0.931

cccccgctggttgagccggccccgagcgg	CRISPR spacer
cccgcgctggttgagccggcaccgagcgg	Protospacer
*** **************** ********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP049836_5	5.3\|3584593\|27\|NZ_CP049836\|CRISPRCasFinder	3584593-3584619	27	NC_017957	Tistrella mobilis KA081020-065 plasmid pTM1, complete sequence	587170-587196	4	0.852
NZ_CP049836_3	3.1\|2174005\|28\|NZ_CP049836\|CRISPRCasFinder	2174005-2174032	28	NZ_CP030128	Indioceanicola profundi strain SCSIO 08040 plasmid unnamed2, complete sequence	289545-289572	5	0.821
NZ_CP049836_5	5.3\|3584593\|27\|NZ_CP049836\|CRISPRCasFinder	3584593-3584619	27	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	133899-133925	5	0.815
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	NZ_LT703506	Mycobacterium chimaera strain Mycobacterium chimaera MC045 isolate Mycobacterium chimaera plasmid 2	40863-40893	5	0.839
NZ_CP049836_1	1.1\|806074\|29\|NZ_CP049836\|CRISPRCasFinder	806074-806102	29	NZ_CP054621	Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence	644339-644367	6	0.793
NZ_CP049836_5	5.3\|3584593\|27\|NZ_CP049836\|CRISPRCasFinder	3584593-3584619	27	NZ_CP049157	Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence	1227206-1227232	6	0.778
NZ_CP049836_5	5.3\|3584593\|27\|NZ_CP049836\|CRISPRCasFinder	3584593-3584619	27	NZ_CP049317	Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence	417211-417237	6	0.778
NZ_CP049836_5	5.3\|3584593\|27\|NZ_CP049836\|CRISPRCasFinder	3584593-3584619	27	NZ_CP045177	Streptomyces tsukubensis strain AT3 plasmid pST1, complete sequence	4783-4809	6	0.778
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	NZ_CP006989	Rhizobium sp. IE4771 plasmid pRetIE4771c, complete sequence	406224-406254	6	0.806
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	MT114163	Mycobacterium phage Settecandela, complete genome	132487-132517	6	0.806
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	MK937592	Mycobacterium phage Phrappuccino, complete genome	123640-123670	6	0.806
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	NZ_CP048284	Rhizobium leguminosarum bv. viciae 248 plasmid pRle248b, complete sequence	221966-221996	6	0.806
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	NC_031122	Gordonia phage Eyre, complete genome	32103-32133	6	0.806
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	NZ_CP045326	Mycobacterium sp. THAF192 plasmid pTHAF192_a, complete sequence	17141-17171	6	0.806
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	NC_020548	Azoarcus sp. KH32C plasmid pAZKH, complete sequence	282565-282595	6	0.806
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	LN997843	Streptomyces reticuli genome assembly TUE45, plasmid : II	766898-766928	6	0.806
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	NZ_CP022992	Paraburkholderia aromaticivorans strain BN5 plasmid pBN2, complete sequence	138672-138702	6	0.806
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	NZ_CP022992	Paraburkholderia aromaticivorans strain BN5 plasmid pBN2, complete sequence	176164-176194	6	0.806
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	NZ_CP022993	Paraburkholderia aromaticivorans strain BN5 plasmid pBN3, complete sequence	85309-85339	6	0.806
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	MK511040	Pseudomonas phage CF63, partial genome	49722-49752	6	0.806
NZ_CP049836_5	5.2\|3584539\|30\|NZ_CP049836\|CRISPRCasFinder	3584539-3584568	30	NZ_CP027299	Streptomyces sp. SGAir0924 plasmid unnamed_5	203817-203846	7	0.767
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	NZ_CP020897	Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5a, complete sequence	182118-182148	7	0.774
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	NZ_CP013553	Rhizobium phaseoli strain N931 plasmid pRphaN931a, complete sequence	270169-270199	7	0.774
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	NZ_CP013586	Rhizobium phaseoli strain N161 plasmid pRphaN161a, complete sequence	274992-275022	7	0.774
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	NZ_CP013559	Rhizobium phaseoli strain N841 plasmid pRphaN841b, complete sequence	271688-271718	7	0.774
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	NZ_CP013576	Rhizobium phaseoli strain N671 plasmid pRphaN671b, complete sequence	271441-271471	7	0.774
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	NZ_CP013548	Rhizobium phaseoli strain R611 plasmid pRetR611a, complete sequence	271439-271469	7	0.774
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	NZ_CP015231	Epibacterium mobile F1926 plasmid unnamed1, complete sequence	247924-247954	7	0.774
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	NZ_CP013528	Rhizobium phaseoli strain R723 plasmid pRphaR723a, complete sequence	269731-269761	7	0.774
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	NZ_CP013533	Rhizobium phaseoli strain R650 plasmid pRphaR650a, complete sequence	271439-271469	7	0.774
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	NZ_CP013538	Rhizobium phaseoli strain R630 plasmid pRphaR630a, complete sequence	264559-264589	7	0.774
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	NZ_CP013543	Rhizobium phaseoli strain R620 plasmid pRphaR620a, complete sequence	274851-274881	7	0.774
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	NZ_CP013564	Rhizobium phaseoli strain N831 plasmid pRphaN831a, complete sequence	270169-270199	7	0.774
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	NZ_CP013581	Rhizobium phaseoli strain N261 plasmid pRphaN261a, complete sequence	269734-269764	7	0.774
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	NZ_CP013570	Rhizobium phaseoli strain N771 plasmid pRphaN771b, complete sequence	271441-271471	7	0.774
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	NZ_CP054028	Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence	89903-89933	7	0.774
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	CP040467	Streptomyces albidoflavus strain UYFA156 plasmid unnamed, complete sequence	254144-254174	7	0.774
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	MK494124	Mycobacterium phage Kristoff, complete genome	24291-24321	7	0.774
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	MN586038	Mycobacterium phage WalterMcMickey, complete genome	24125-24155	7	0.774
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	KY676784	Streptomyces phage ToastyFinz, complete genome	26237-26267	7	0.774
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	JX411619	Mycobacterium virus Rebeuca, complete genome	24292-24322	7	0.774
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	NC_041982	Mycobacterium phage Twister, complete genome	24125-24155	7	0.774
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	NZ_LR594668	Variovorax sp. SRS16 plasmid 3	175722-175752	7	0.774
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	NZ_CP049159	Caballeronia sp. SBC1 plasmid pSBC1_3, complete sequence	189746-189776	7	0.774
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	NZ_CP030128	Indioceanicola profundi strain SCSIO 08040 plasmid unnamed2, complete sequence	92977-93007	7	0.774
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	NZ_CP049319	Caballeronia sp. SBC2 plasmid pSBC2-3, complete sequence	187222-187252	7	0.774
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	NC_016623	Azospirillum lipoferum 4B plasmid AZO_p3, complete sequence	598289-598319	7	0.774
NZ_CP049836_5	5.2\|3584539\|30\|NZ_CP049836\|CRISPRCasFinder	3584539-3584568	30	NZ_CP033971	Cupriavidus pauculus strain FDAARGOS_614 plasmid unnamed2, complete sequence	85417-85446	8	0.733
NZ_CP049836_5	5.2\|3584539\|30\|NZ_CP049836\|CRISPRCasFinder	3584539-3584568	30	NZ_CP048425	Rhizobium daejeonense strain KACC 13094 plasmid unnamed2, complete sequence	300784-300813	8	0.733
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	807742-807772	8	0.742
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	NZ_CP044989	Deinococcus sp. AJ005 plasmid p380k, complete sequence	138199-138229	8	0.742
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	NZ_CP021356	Rhodococcus sp. S2-17 plasmid pRB29, complete sequence	10219-10249	8	0.742
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	NZ_CP015881	Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence	1267688-1267718	8	0.742
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	NZ_CP046573	Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence	329526-329556	8	0.742
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	NZ_CP022220	Bradyrhizobium guangxiense strain CCBAU 53363 plasmid p53363, complete sequence	155772-155802	8	0.742
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	NC_012521	Rhodococcus opacus B4 plasmid pROB02, complete sequence	29423-29453	8	0.742
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	NZ_CP010801	Ralstonia mannitolilytica strain SN82F48 plasmid pRMAN01, complete sequence	49620-49650	8	0.742
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	NC_013857	Azospirillum sp. B510 plasmid pAB510c, complete sequence	50492-50522	8	0.742
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	NZ_CP030263	Ensifer adhaerens strain Corn53 plasmid AA, complete sequence	905550-905580	8	0.742
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	NZ_CP030052	Bradyrhizobium guangdongense strain CCBAU 51649 plasmid unnamed, complete sequence	747815-747845	8	0.742
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	NZ_CP030054	Bradyrhizobium guangzhouense strain CCBAU 51670 plasmid unnamed1, complete sequence	927409-927439	8	0.742
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	NC_010625	Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence	92369-92399	9	0.71
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	NC_015057	Granulicella tundricola MP5ACTX9 plasmid pACIX901, complete sequence	167487-167517	9	0.71
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	NZ_CP013600	Rhizobium sp. N741 plasmid pRspN741e, complete sequence	741659-741689	9	0.71
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	NZ_CP013504	Rhizobium esperanzae strain N561 plasmid pRspN561d, complete sequence	741689-741719	9	0.71
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	NZ_CP013510	Rhizobium sp. N1341 plasmid pRspN1341e, complete sequence	740100-740130	9	0.71
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	NZ_CP013521	Rhizobium sp. N113 plasmid pRspN113d, complete sequence	744347-744377	9	0.71
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	NZ_CP013494	Rhizobium sp. N6212 plasmid pRspN6212d, complete sequence	731248-731278	9	0.71
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	NZ_CP013594	Rhizobium sp. N871 plasmid pRspN871d, complete sequence	741689-741719	9	0.71
NZ_CP049836_7	7.1\|5159616\|31\|NZ_CP049836\|CRISPRCasFinder	5159616-5159646	31	NZ_CP017942	Phyllobacterium zundukense strain Tri-48 plasmid unnamed3, complete sequence	399436-399466	10	0.677

1. spacer 5.3|3584593|27|NZ_CP049836|CRISPRCasFinder matches to NC_017957 (Tistrella mobilis KA081020-065 plasmid pTM1, complete sequence) position: , mismatch: 4, identity: 0.852

gttctgcttgtcgcggttctggccccc	CRISPR spacer
gttcagcttgtcgcggttctgggcgtc	Protospacer
**** ***************** * .*

2. spacer 3.1|2174005|28|NZ_CP049836|CRISPRCasFinder matches to NZ_CP030128 (Indioceanicola profundi strain SCSIO 08040 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.821

gcgttggggacccgggtaggacggcgcg	CRISPR spacer
gcgttggcgaccagggtaggacgctgct	Protospacer
******* **** ********** .**

3. spacer 5.3|3584593|27|NZ_CP049836|CRISPRCasFinder matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 5, identity: 0.815

gttctgcttgtcgcggttctggccccc	CRISPR spacer
gcccagcttgtcgaggttctggccccg	Protospacer
*..* ******** ************

4. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to NZ_LT703506 (Mycobacterium chimaera strain Mycobacterium chimaera MC045 isolate Mycobacterium chimaera plasmid 2) position: , mismatch: 5, identity: 0.839

gtcgatcttgcccttgacggcgtcgg-cggcg	CRISPR spacer
aacgatcttgccgttgacgccgtcggacggc-	Protospacer
. ********** ****** ****** ****

5. spacer 1.1|806074|29|NZ_CP049836|CRISPRCasFinder matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 6, identity: 0.793

cccccgctggttgagccggccccgagcgg	CRISPR spacer
cgcgtgctggttgagccgggccagagcgt	Protospacer
* * .************** ** *****

6. spacer 5.3|3584593|27|NZ_CP049836|CRISPRCasFinder matches to NZ_CP049157 (Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence) position: , mismatch: 6, identity: 0.778

gttctgcttgtcgcggttctggccccc	CRISPR spacer
tcgctgcttgtcgcgattctggcctcg	Protospacer
 . ************.********.*

7. spacer 5.3|3584593|27|NZ_CP049836|CRISPRCasFinder matches to NZ_CP049317 (Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence) position: , mismatch: 6, identity: 0.778

gttctgcttgtcgcggttctggccccc	CRISPR spacer
tcgctgcttgtcgcgattctggcctcg	Protospacer
 . ************.********.*

8. spacer 5.3|3584593|27|NZ_CP049836|CRISPRCasFinder matches to NZ_CP045177 (Streptomyces tsukubensis strain AT3 plasmid pST1, complete sequence) position: , mismatch: 6, identity: 0.778

gttctgcttgtcgcggttctggccccc	CRISPR spacer
actctgcttgccgcggttctggcacat	Protospacer
..********.************ * .

9. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to NZ_CP006989 (Rhizobium sp. IE4771 plasmid pRetIE4771c, complete sequence) position: , mismatch: 6, identity: 0.806

gtcgatcttgcccttgacggcgtcg----gcggcg	CRISPR spacer
ttcgatcttgcccatgacggcgtcgaattgc----	Protospacer
 ************ ***********    **

10. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to MT114163 (Mycobacterium phage Settecandela, complete genome) position: , mismatch: 6, identity: 0.806

gtcgatcttgcccttgacggcgtcggcggcg	CRISPR spacer
ggcgatcttgccgttgacgacgtcggccttg	Protospacer
* ********** ******.*******  .*

11. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to MK937592 (Mycobacterium phage Phrappuccino, complete genome) position: , mismatch: 6, identity: 0.806

gtcgatcttgcccttgacggcgtcggcggcg	CRISPR spacer
ggcgatcttgccgttgacgacgtcggccttg	Protospacer
* ********** ******.*******  .*

12. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to NZ_CP048284 (Rhizobium leguminosarum bv. viciae 248 plasmid pRle248b, complete sequence) position: , mismatch: 6, identity: 0.806

gtcgatcttgcccttgacggcgtcggcggcg	CRISPR spacer
gatggtcttgcccttcacgtcgtcggcggtg	Protospacer
* .*.********** *** *********.*

13. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to NC_031122 (Gordonia phage Eyre, complete genome) position: , mismatch: 6, identity: 0.806

gtcgat-cttgcccttgacggcgtcggcggcg	CRISPR spacer
-tcactgcgtgcccttggcggcgtcggcggcc	Protospacer
 **. * * ********.*************

14. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to NZ_CP045326 (Mycobacterium sp. THAF192 plasmid pTHAF192_a, complete sequence) position: , mismatch: 6, identity: 0.806

gtcgatcttgcccttgacggcgtcggcggcg	CRISPR spacer
gtcagcgttgcccttgccggcatcggcggcg	Protospacer
***... ********* ****.*********

15. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to NC_020548 (Azoarcus sp. KH32C plasmid pAZKH, complete sequence) position: , mismatch: 6, identity: 0.806

gtcgatcttgcccttgacggcgtcggcggcg	CRISPR spacer
ggcgatcttgcccttgccggcgtcccacgcg	Protospacer
* ************** *******    ***

16. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to LN997843 (Streptomyces reticuli genome assembly TUE45, plasmid : II) position: , mismatch: 6, identity: 0.806

gtcgatcttgcccttgacggcgtcggcggcg	CRISPR spacer
gtcttccttgcccttgagggcgtcggcgacc	Protospacer
***  .*********** **********.*

17. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to NZ_CP022992 (Paraburkholderia aromaticivorans strain BN5 plasmid pBN2, complete sequence) position: , mismatch: 6, identity: 0.806

gtcgatcttgcccttgacggcgtcggcggcg-	CRISPR spacer
gtggatcttgcgcttgacggcgtt-gcggtac	Protospacer
** ******** ***********. ****..

18. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to NZ_CP022992 (Paraburkholderia aromaticivorans strain BN5 plasmid pBN2, complete sequence) position: , mismatch: 6, identity: 0.806

gtcgatcttgcccttgacggcgtcggcggcg-	CRISPR spacer
gtggatcttgcgcttgacggcgtt-gcggtac	Protospacer
** ******** ***********. ****..

19. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to NZ_CP022993 (Paraburkholderia aromaticivorans strain BN5 plasmid pBN3, complete sequence) position: , mismatch: 6, identity: 0.806

gtcgatcttgcccttgacggcgtcggcggcg-	CRISPR spacer
gtggatcttgcgcttgacggcgtt-gcggtac	Protospacer
** ******** ***********. ****..

20. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to MK511040 (Pseudomonas phage CF63, partial genome) position: , mismatch: 6, identity: 0.806

-gtcgatcttgcccttgacggcgtcggcggcg	CRISPR spacer
cgtc-ttcttgcccttgatggcgttggcgaag	Protospacer
 ***  ************.*****.****. *

21. spacer 5.2|3584539|30|NZ_CP049836|CRISPRCasFinder matches to NZ_CP027299 (Streptomyces sp. SGAir0924 plasmid unnamed_5) position: , mismatch: 7, identity: 0.767

gttctggcccccgtcacggttctgatttcc	CRISPR spacer
gttctggccaccgtcacggtgctgtcggcg	Protospacer
********* ********** *** .  *

22. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to NZ_CP020897 (Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5a, complete sequence) position: , mismatch: 7, identity: 0.774

gtcgatcttgcccttgacggcgtcggcggcg	CRISPR spacer
gatggtcttgcccttgacgtcctcggcggtc	Protospacer
* .*.************** * *******.

23. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to NZ_CP013553 (Rhizobium phaseoli strain N931 plasmid pRphaN931a, complete sequence) position: , mismatch: 7, identity: 0.774

gtcgatcttgcccttgacggcgtcggcggcg	CRISPR spacer
gatggtcttgcccttgacgtcctcggcggtc	Protospacer
* .*.************** * *******.

24. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to NZ_CP013586 (Rhizobium phaseoli strain N161 plasmid pRphaN161a, complete sequence) position: , mismatch: 7, identity: 0.774

gtcgatcttgcccttgacggcgtcggcggcg	CRISPR spacer
gatggtcttgcccttgacgtcctcggcggtc	Protospacer
* .*.************** * *******.

25. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to NZ_CP013559 (Rhizobium phaseoli strain N841 plasmid pRphaN841b, complete sequence) position: , mismatch: 7, identity: 0.774

gtcgatcttgcccttgacggcgtcggcggcg	CRISPR spacer
gatggtcttgcccttgacgtcctcggcggtc	Protospacer
* .*.************** * *******.

26. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to NZ_CP013576 (Rhizobium phaseoli strain N671 plasmid pRphaN671b, complete sequence) position: , mismatch: 7, identity: 0.774

gtcgatcttgcccttgacggcgtcggcggcg	CRISPR spacer
gatggtcttgcccttgacgtcctcggcggtc	Protospacer
* .*.************** * *******.

27. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to NZ_CP013548 (Rhizobium phaseoli strain R611 plasmid pRetR611a, complete sequence) position: , mismatch: 7, identity: 0.774

gtcgatcttgcccttgacggcgtcggcggcg	CRISPR spacer
gatggtcttgcccttgacgtcctcggcggtc	Protospacer
* .*.************** * *******.

28. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to NZ_CP015231 (Epibacterium mobile F1926 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.774

gtcgatcttgcccttgacggcgtcggcggcg	CRISPR spacer
tacgcccttgcccttgacggtgtcggcgatg	Protospacer
  ** .**************.*******..*

29. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to NZ_CP013528 (Rhizobium phaseoli strain R723 plasmid pRphaR723a, complete sequence) position: , mismatch: 7, identity: 0.774

gtcgatcttgcccttgacggcgtcggcggcg	CRISPR spacer
gatggtcttgcccttgacgtcctcggcggtc	Protospacer
* .*.************** * *******.

30. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to NZ_CP013533 (Rhizobium phaseoli strain R650 plasmid pRphaR650a, complete sequence) position: , mismatch: 7, identity: 0.774

gtcgatcttgcccttgacggcgtcggcggcg	CRISPR spacer
gatggtcttgcccttgacgtcctcggcggtc	Protospacer
* .*.************** * *******.

31. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to NZ_CP013538 (Rhizobium phaseoli strain R630 plasmid pRphaR630a, complete sequence) position: , mismatch: 7, identity: 0.774

gtcgatcttgcccttgacggcgtcggcggcg	CRISPR spacer
gatggtcttgcccttgacgtcctcggcggtc	Protospacer
* .*.************** * *******.

32. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to NZ_CP013543 (Rhizobium phaseoli strain R620 plasmid pRphaR620a, complete sequence) position: , mismatch: 7, identity: 0.774

gtcgatcttgcccttgacggcgtcggcggcg	CRISPR spacer
gatggtcttgcccttgacgtcctcggcggtc	Protospacer
* .*.************** * *******.

33. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to NZ_CP013564 (Rhizobium phaseoli strain N831 plasmid pRphaN831a, complete sequence) position: , mismatch: 7, identity: 0.774

gtcgatcttgcccttgacggcgtcggcggcg	CRISPR spacer
gatggtcttgcccttgacgtcctcggcggtc	Protospacer
* .*.************** * *******.

34. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to NZ_CP013581 (Rhizobium phaseoli strain N261 plasmid pRphaN261a, complete sequence) position: , mismatch: 7, identity: 0.774

gtcgatcttgcccttgacggcgtcggcggcg	CRISPR spacer
gatggtcttgcccttgacgtcctcggcggtc	Protospacer
* .*.************** * *******.

35. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to NZ_CP013570 (Rhizobium phaseoli strain N771 plasmid pRphaN771b, complete sequence) position: , mismatch: 7, identity: 0.774

gtcgatcttgcccttgacggcgtcggcggcg	CRISPR spacer
gatggtcttgcccttgacgtcctcggcggtc	Protospacer
* .*.************** * *******.

36. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to NZ_CP054028 (Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence) position: , mismatch: 7, identity: 0.774

gtcgatcttgcccttgacggcgtcggcggcg	CRISPR spacer
gcccccattgccgttgaccgcgtcggcggcg	Protospacer
*.*  . ***** ***** ************

37. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to CP040467 (Streptomyces albidoflavus strain UYFA156 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.774

gtcgatcttgcccttgacggcgtcggcggcg	CRISPR spacer
ggccaggcggccctcgacggcgtcggcggcg	Protospacer
* * *  . *****.****************

38. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to MK494124 (Mycobacterium phage Kristoff, complete genome) position: , mismatch: 7, identity: 0.774

gtcgatcttgcccttgacggcgtcggcggcg	CRISPR spacer
ctccatcgtgcccttgacggcgtcgatgcct	Protospacer
 ** *** *****************..* *

39. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to MN586038 (Mycobacterium phage WalterMcMickey, complete genome) position: , mismatch: 7, identity: 0.774

gtcgatcttgcccttgacggcgtcggcggcg	CRISPR spacer
ctccatcgtgcccttgacggcgtcgatgcct	Protospacer
 ** *** *****************..* *

40. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to KY676784 (Streptomyces phage ToastyFinz, complete genome) position: , mismatch: 7, identity: 0.774

gtcgatcttgcccttgacggcgtcggcggcg	CRISPR spacer
ggcgtgggcgcccttgacggcctcggcggcg	Protospacer
* **    .************ *********

41. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to JX411619 (Mycobacterium virus Rebeuca, complete genome) position: , mismatch: 7, identity: 0.774

gtcgatcttgcccttgacggcgtcggcggcg	CRISPR spacer
ctccatcgtgcccttgacggcgtcgatgcct	Protospacer
 ** *** *****************..* *

42. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to NC_041982 (Mycobacterium phage Twister, complete genome) position: , mismatch: 7, identity: 0.774

gtcgatcttgcccttgacggcgtcggcggcg	CRISPR spacer
ctccatcgtgcccttgacggcgtcgatgcct	Protospacer
 ** *** *****************..* *

43. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to NZ_LR594668 (Variovorax sp. SRS16 plasmid 3) position: , mismatch: 7, identity: 0.774

gtcgatcttgcccttgacggcgtcggcggcg	CRISPR spacer
gtcgatcttgcccgtgacggtgtagccctgg	Protospacer
************* ******.** * *   *

44. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to NZ_CP049159 (Caballeronia sp. SBC1 plasmid pSBC1_3, complete sequence) position: , mismatch: 7, identity: 0.774

gtcgatcttgcccttgacggcgtcggcggcg-	CRISPR spacer
gtggatcttgcgcttgacggcgtt-acggtac	Protospacer
** ******** ***********. .***..

45. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to NZ_CP030128 (Indioceanicola profundi strain SCSIO 08040 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.774

gtcgatct---tgcccttgacggcgtcggcggcg	CRISPR spacer
---gacccagatgccccggacggcgtcggcggcg	Protospacer
   **.*.   *****. ****************

46. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to NZ_CP049319 (Caballeronia sp. SBC2 plasmid pSBC2-3, complete sequence) position: , mismatch: 7, identity: 0.774

gtcgatcttgcccttgacggcgtcggcggcg-	CRISPR spacer
gtggatcttgcgcttgacggcgtt-acggtac	Protospacer
** ******** ***********. .***..

47. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to NC_016623 (Azospirillum lipoferum 4B plasmid AZO_p3, complete sequence) position: , mismatch: 7, identity: 0.774

gtcgatcttgcccttgacggcgtcggcggcg	CRISPR spacer
ggcgaccttgccctcgacggcgtcgagtccg	Protospacer
* ***.********.**********.   **

48. spacer 5.2|3584539|30|NZ_CP049836|CRISPRCasFinder matches to NZ_CP033971 (Cupriavidus pauculus strain FDAARGOS_614 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

gttctggcccccgtcacggttctgatttcc	CRISPR spacer
agactggcctccgtcacggttctgaaaagc	Protospacer
.  ******.***************    *

49. spacer 5.2|3584539|30|NZ_CP049836|CRISPRCasFinder matches to NZ_CP048425 (Rhizobium daejeonense strain KACC 13094 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

gttctggcccccgtcacggttctgatttcc	CRISPR spacer
gaggggatacccgtcaccgttctgatttcc	Protospacer
*    *.. ******** ************

50. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 8, identity: 0.742

gtcgatcttgcccttgacggcgtcggcggcg	CRISPR spacer
cccgaccttgcccttgacggtgtcgacctgg	Protospacer
 .***.**************.****.*   *

51. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to NZ_CP044989 (Deinococcus sp. AJ005 plasmid p380k, complete sequence) position: , mismatch: 8, identity: 0.742

gtcgatcttgcccttgacggcgtcggcggcg	CRISPR spacer
gtatgagctgcccttgacggtgtgggcggcg	Protospacer
**  .  .************.** *******

52. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to NZ_CP021356 (Rhodococcus sp. S2-17 plasmid pRB29, complete sequence) position: , mismatch: 8, identity: 0.742

gtcgatcttgcccttgacggcgtcggcggcg	CRISPR spacer
ggccgaggtggccttgacggcgtcggcgacg	Protospacer
* * .   ** *****************.**

53. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 8, identity: 0.742

gtcgatcttgcccttgacggcgtcggcggcg	CRISPR spacer
atctccggtgccgttgccggcgtcggcggcg	Protospacer
.**  .  **** *** **************

54. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to NZ_CP046573 (Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence) position: , mismatch: 8, identity: 0.742

gtcgatcttgcccttgacggcgtcggcggcg	CRISPR spacer
ggccgaggtggccttgacggcgtcggcgacg	Protospacer
* * .   ** *****************.**

55. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to NZ_CP022220 (Bradyrhizobium guangxiense strain CCBAU 53363 plasmid p53363, complete sequence) position: , mismatch: 8, identity: 0.742

gtcgatcttgcccttgacggcgtcggcggcg	CRISPR spacer
gacgaacttgcccttgagggcgtcgagttcc	Protospacer
* *** *********** *******.   *

56. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to NC_012521 (Rhodococcus opacus B4 plasmid pROB02, complete sequence) position: , mismatch: 8, identity: 0.742

gtcgatcttgcccttgacggcgtcggcggcg	CRISPR spacer
cagggccgtgtcctggacggcgtcggcggcg	Protospacer
   *..* **.*** ****************

57. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to NZ_CP010801 (Ralstonia mannitolilytica strain SN82F48 plasmid pRMAN01, complete sequence) position: , mismatch: 8, identity: 0.742

gtcgatcttgcccttgacggcgtcggcggcg	CRISPR spacer
ccggactctgcgcttgccggcgtcggcggcg	Protospacer
 . **...*** **** **************

58. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to NC_013857 (Azospirillum sp. B510 plasmid pAB510c, complete sequence) position: , mismatch: 8, identity: 0.742

gtcgatcttgcccttgacggcgtcggcggcg	CRISPR spacer
gtcgaactggcccttgacggcgttcatcgcc	Protospacer
***** ** **************. .. **

59. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to NZ_CP030263 (Ensifer adhaerens strain Corn53 plasmid AA, complete sequence) position: , mismatch: 8, identity: 0.742

gtcgatcttgcccttgacggcgtcggcggcg	CRISPR spacer
atctccggtgccgttgccggcgtcggcggcg	Protospacer
.**  .  **** *** **************

60. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to NZ_CP030052 (Bradyrhizobium guangdongense strain CCBAU 51649 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.742

gtcgatcttgcccttgacggcgtcggcggcg	CRISPR spacer
gacgaacttgcccttgagggcgtcgagttcc	Protospacer
* *** *********** *******.   *

61. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to NZ_CP030054 (Bradyrhizobium guangzhouense strain CCBAU 51670 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.742

gtcgatcttgcccttgacggcgtcggcggcg	CRISPR spacer
gacgaacttgcccttgagggcgtcgagttcc	Protospacer
* *** *********** *******.   *

62. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to NC_010625 (Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence) position: , mismatch: 9, identity: 0.71

gtcgatcttgcccttgacggcgtcggcggcg	CRISPR spacer
aggcgcgctggccttgacggcgtcggcggcg	Protospacer
.   .. .** ********************

63. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to NC_015057 (Granulicella tundricola MP5ACTX9 plasmid pACIX901, complete sequence) position: , mismatch: 9, identity: 0.71

gtcgatcttgcccttgacggcgtcggcggcg	CRISPR spacer
gctataggtgaccttgacggcgttggcggcg	Protospacer
*...    ** ************.*******

64. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to NZ_CP013600 (Rhizobium sp. N741 plasmid pRspN741e, complete sequence) position: , mismatch: 9, identity: 0.71

gtcgatcttgcccttgacggcgtcggcggcg	CRISPR spacer
catttccatggccttgacggcgtcggtggcg	Protospacer
  .  .* ** ***************.****

65. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to NZ_CP013504 (Rhizobium esperanzae strain N561 plasmid pRspN561d, complete sequence) position: , mismatch: 9, identity: 0.71

gtcgatcttgcccttgacggcgtcggcggcg	CRISPR spacer
catttccatggccttgacggcgtcggtggcg	Protospacer
  .  .* ** ***************.****

66. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to NZ_CP013510 (Rhizobium sp. N1341 plasmid pRspN1341e, complete sequence) position: , mismatch: 9, identity: 0.71

gtcgatcttgcccttgacggcgtcggcggcg	CRISPR spacer
catttccatggccttgacggcgtcggtggcg	Protospacer
  .  .* ** ***************.****

67. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to NZ_CP013521 (Rhizobium sp. N113 plasmid pRspN113d, complete sequence) position: , mismatch: 9, identity: 0.71

gtcgatcttgcccttgacggcgtcggcggcg	CRISPR spacer
catttccatggccttgacggcgtcggtggcg	Protospacer
  .  .* ** ***************.****

68. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to NZ_CP013494 (Rhizobium sp. N6212 plasmid pRspN6212d, complete sequence) position: , mismatch: 9, identity: 0.71

gtcgatcttgcccttgacggcgtcggcggcg	CRISPR spacer
catttccatggccttgacggcgtcggtggcg	Protospacer
  .  .* ** ***************.****

69. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to NZ_CP013594 (Rhizobium sp. N871 plasmid pRspN871d, complete sequence) position: , mismatch: 9, identity: 0.71

gtcgatcttgcccttgacggcgtcggcggcg	CRISPR spacer
catttccatggccttgacggcgtcggtggcg	Protospacer
  .  .* ** ***************.****

70. spacer 7.1|5159616|31|NZ_CP049836|CRISPRCasFinder matches to NZ_CP017942 (Phyllobacterium zundukense strain Tri-48 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.677

gtcgatcttgcccttgacggcgtcggcggcg	CRISPR spacer
tatcatcttgcccctgacggcgccggctctc	Protospacer
  . *********.********.****  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

250691 : 259151

Gordonia_phage(60.0%)

integrase,transposase

attL 250683:250742|attR 258749:260125

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
250683:250742	attL	NA	NA	NA	NA
WP_101819295.1\|250691_251891_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	3.8e-36	31.2
WP_157781276.1\|252060_252756_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_165629283.1\|252836_253148_-	hypothetical protein	NA	NA	NA	NA
WP_068970850.1\|253709_255008_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_004022072.1\|255004_256099_+	hypothetical protein	NA	NA	NA	NA
WP_004022138.1\|256369_256687_+\|transposase	transposase	A0A1B3AZF8	Gordonia_phage	1.4e-51	100.0
WP_014928955.1\|256689_257430_+\|transposase	IS3 family transposase	A0A1B3AZE5	Gordonia_phage	5.2e-113	100.0
WP_101819295.1\|257599_258799_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	3.8e-36	31.2
WP_040527186.1\|258896_259151_+\|transposase	IS3 family transposase	A0A1B3AZE5	Gordonia_phage	2.7e-45	100.0
258749:260125	attR	NA	NA	NA	NA

DBSCAN-SWA_2

270129 : 336392

Gordonia_phage(22.22%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_165629285.1\|270129_271428_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_068972656.1\|271434_272199_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	3.2e-49	43.1
WP_033206569.1\|273005_276047_-	MMPL family transporter	NA	NA	NA	NA
WP_004021759.1\|276133_276760_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_004021760.1\|277060_277813_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_004021761.1\|277898_278804_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_165629286.1\|278793_279864_-	ferredoxin--NADP reductase	Q58M74	Prochlorococcus_phage	1.8e-05	37.9
WP_165630755.1\|279860_280688_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_165629287.1\|280777_282298_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_004021765.1\|282459_283428_-	diiron oxygenase	NA	NA	NA	NA
WP_004021766.1\|283561_283900_+	DUF4873 domain-containing protein	NA	NA	NA	NA
WP_014928953.1\|283982_287015_+	RND family transporter	NA	NA	NA	NA
WP_004022138.1\|287254_287572_+\|transposase	transposase	A0A1B3AZF8	Gordonia_phage	1.4e-51	100.0
WP_014928955.1\|287574_288315_+\|transposase	IS3 family transposase	A0A1B3AZE5	Gordonia_phage	5.2e-113	100.0
WP_101819295.1\|288484_289684_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	3.8e-36	31.2
WP_014928958.1\|290098_291739_-	long-chain fatty acid--CoA ligase	A0A1V0SBX8	Catovirus	6.3e-18	24.3
WP_004023298.1\|291768_292458_-	hypothetical protein	NA	NA	NA	NA
WP_004023297.1\|292503_293460_-	MCE family protein	NA	NA	NA	NA
WP_004023296.1\|293456_294500_-	MCE family protein	NA	NA	NA	NA
WP_004023295.1\|294496_295558_-	MCE family protein	NA	NA	NA	NA
WP_004023294.1\|295551_296547_-	MCE family protein	NA	NA	NA	NA
WP_004023293.1\|296543_297557_-	MCE family protein	NA	NA	NA	NA
WP_004023292.1\|297553_298591_-	MCE family protein	NA	NA	NA	NA
WP_014928961.1\|298599_299463_-	ABC transporter permease	NA	NA	NA	NA
WP_033206584.1\|299473_300208_-	ABC transporter permease	NA	NA	NA	NA
WP_004023289.1\|300466_300943_+	PaaI family thioesterase	NA	NA	NA	NA
WP_068884350.1\|303163_304255_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_033204248.1\|304278_304617_+	hypothetical protein	NA	NA	NA	NA
WP_058253051.1\|305515_305965_-	hypothetical protein	NA	NA	NA	NA
WP_058253050.1\|305961_306675_-	TNT domain-containing protein	NA	NA	NA	NA
WP_058253049.1\|306795_307728_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_004020850.1\|307966_309178_+	cytochrome P450	NA	NA	NA	NA
WP_065632050.1\|309179_310223_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_068970400.1\|310264_311167_-	prolyl oligopeptidase family serine peptidase	NA	NA	NA	NA
WP_165629288.1\|311217_312786_-	hypothetical protein	NA	NA	NA	NA
WP_068970398.1\|313454_313709_-	hypothetical protein	NA	NA	NA	NA
WP_068970397.1\|313862_314612_-	DUF72 domain-containing protein	NA	NA	NA	NA
WP_058253059.1\|314744_315344_+	NAD(P)H:quinone oxidoreductase	NA	NA	NA	NA
WP_065630688.1\|315633_316128_+	FBP domain-containing protein	NA	NA	NA	NA
WP_065630635.1\|316577_317006_+	nitroreductase family deazaflavin-dependent oxidoreductase	NA	NA	NA	NA
WP_065630636.1\|317085_317634_+	dihydrofolate reductase	NA	NA	NA	NA
WP_065630637.1\|317640_318075_-	DUF309 domain-containing protein	NA	NA	NA	NA
WP_068970529.1\|318188_318620_+	hypothetical protein	NA	NA	NA	NA
WP_165630756.1\|318641_319037_-	response regulator transcription factor	NA	NA	NA	NA
WP_068970527.1\|321845_322226_+	SHOCT domain-containing protein	NA	NA	NA	NA
WP_068970526.1\|322278_323580_+	DUF1254 domain-containing protein	NA	NA	NA	NA
WP_165629289.1\|324008_325337_+	DUF3662 and FHA domain-containing protein	NA	NA	NA	NA
WP_058253019.1\|325559_326024_+	FHA domain-containing protein	NA	NA	NA	NA
WP_068971405.1\|326020_327535_+	serine/threonine-protein phosphatase	NA	NA	NA	NA
WP_065630650.1\|327531_328965_+	FtsW/RodA/SpoVE family cell cycle protein	NA	NA	NA	NA
WP_065630651.1\|328961_330461_+	penicillin-binding protein 2	NA	NA	NA	NA
WP_165629290.1\|330457_331825_+	serine/threonine protein kinase	T2AWK4	Cannes_8_virus	1.4e-15	29.4
WP_058253014.1\|331917_333864_+	Stk1 family PASTA domain-containing Ser/Thr kinase	A0A1B1IUU3	uncultured_Mediterranean_phage	6.1e-20	31.2
WP_078114064.1\|333946_334606_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	1.1e-42	45.7
WP_010843022.1\|334755_335046_+	cell division protein CrgA	NA	NA	NA	NA
WP_165629291.1\|335161_335665_+	PH domain-containing protein	NA	NA	NA	NA
WP_078114087.1\|335678_336392_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA

DBSCAN-SWA_3

1979772 : 1989391

Gordonia_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_055475908.1\|1979772_1980330_+	NAD(P)H-dependent oxidoreductase	A0A2P0ZL77	Lactobacillus_phage	1.6e-10	32.4
WP_055475909.1\|1980750_1980984_+	redoxin NrdH	V5UN81	Mycobacterium_phage	1.7e-22	66.2
WP_055475910.1\|1981174_1981639_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	G3MBF1	Bacillus_virus	4.3e-12	31.5
WP_068970713.1\|1981739_1983932_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	1.2e-210	51.7
WP_078112943.1\|1984121_1984397_+	DUF3892 domain-containing protein	NA	NA	NA	NA
WP_068970712.1\|1984528_1985533_+	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A160DHK0	Gordonia_phage	7.5e-155	85.9
WP_068970711.1\|1985582_1986392_-	hypothetical protein	NA	NA	NA	NA
WP_068970710.1\|1986388_1989391_-	DEAD/DEAH box helicase	A0A160DDV1	Gordonia_phage	2.5e-36	28.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP049836

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection