CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP049858	Dysgonomonas sp. HDW5B chromosome, complete genome	1 crisprs	WYL,DEDDh,cas3,PD-DExK	0	1	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP049858_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049858_1

1500450-1500568

Orphan

Consensus_repeat	Method
CAAAAGAGAGCGGAAGAAGCTCA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP049858_1

>merge|NZ_CP049858|1|1500450-1500568|CRISPRCasFinder
CAGAAAAGAAACGAGCAAGCTCAGAAAATAGCCATTGATGCCCAAAAGAGAGCGGAAGAAGCTCAAAAGAGGGCAGAGGAGAGAGCTAAAAATGGACAACAGAGAGCGGAAGAAGCTCA

>NZ_CP049858|1|1|1500450-1500568|CRISPRCasFinder
CAGAAAAGAAACGAGCAAGCTCA	GAAAATAGCCATTGATGCC
CAAAAGAGAGCGGAAGAAGCTCA	AAAGAGGGCAGAGGAGAGAGCTAAAAATGGA
CAACAGAGAGCGGAAGAAGCTCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049858.1\|WP_166199064.1\|1507367_1508978_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP049858.1\|WP_166199055.1\|1496538_1497765_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366737
NZ_CP049858.1\|WP_166199050.1\|1484333_1485551_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049858.1\|WP_166112525.1\|1493360_1494878_-\|glutamine-hydrolyzing-GMP-synthase	unknown	unknown	gnl\|CDD\|234614
NZ_CP049858.1\|WP_166199057.1\|1498568_1499072_+\|RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|224511
NZ_CP049858.1\|WP_166199062.1\|1503397_1504591_-\|alpha-1,6-mannanase	unknown	unknown	gnl\|CDD\|367601
NZ_CP049858.1\|WP_166199061.1\|1501848_1503321_-\|glycoside-hydrolase-family-125-protein	unknown	unknown	gnl\|CDD\|377716
NZ_CP049858.1\|WP_166199068.1\|1514151_1515666_+\|RagB/SusD-family-nutrient-uptake-outer-membrane-protein	unknown	unknown	gnl\|CDD\|380159
NZ_CP049858.1\|WP_166199051.1\|1485714_1486980_-\|DUF2851-family-protein	unknown	unknown	gnl\|CDD\|378539
NZ_CP049858.1\|WP_166199054.1\|1496026_1496533_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049858.1\|WP_166199065.1\|1509277_1509808_+\|DUF5004-domain-containing-protein	unknown	unknown	gnl\|CDD\|374516
NZ_CP049858.1\|WP_166199056.1\|1498070_1498538_+\|DUF4252-domain-containing-protein	unknown	unknown	gnl\|CDD\|379445
NZ_CP049858.1\|WP_166199069.1\|1515725_1516961_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|211416
NZ_CP049858.1\|WP_166199053.1\|1495527_1496025_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049858.1\|WP_166199067.1\|1511179_1514116_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|274948
NZ_CP049858.1\|WP_166199058.1\|1499061_1499580_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049858.1\|WP_166199066.1\|1509921_1511055_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049858.1\|WP_166199052.1\|1495046_1495526_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049858.1\|WP_166199060.1\|1500801_1501761_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|378820
NZ_CP049858.1\|WP_166199063.1\|1504965_1506948_-\|glycoside-hydrolase-family-97-protein	unknown	unknown	gnl\|CDD\|371140

Protein	Function_ID	Function_description	E-value
NZ_CP049858.1\|WP_166199064.1\|1507367_1508978_+\|hypothetical-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	2.05854e-05
NZ_CP049858.1\|WP_166199055.1\|1496538_1497765_-\|hypothetical-protein	gnl\|CDD\|366737	pfam01640, Peptidase_C10, Peptidase C10 family. This family represents just the active peptide part of these proteins. Residues 1-120 are not part of the model as they form the pro-peptide, which before cleavage blocks the active site from the substrate. The catalytic residues of histidine and cysteine are brought close together at the active site by the folding of the active peptide.	2.1578e-44
NZ_CP049858.1\|WP_166112525.1\|1493360_1494878_-\|glutamine-hydrolyzing-GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
NZ_CP049858.1\|WP_166199057.1\|1498568_1499072_+\|RNA-polymerase-sigma-factor	gnl\|CDD\|224511	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription].	8.80744e-32
NZ_CP049858.1\|WP_166199062.1\|1503397_1504591_-\|alpha-1,6-mannanase	gnl\|CDD\|367601	pfam03663, Glyco_hydro_76, Glycosyl hydrolase family 76. Family of alpha-1,6-mannanases.	1.67241e-30
NZ_CP049858.1\|WP_166199061.1\|1501848_1503321_-\|glycoside-hydrolase-family-125-protein	gnl\|CDD\|377716	pfam06824, Glyco_hydro_125, Metal-independent alpha-mannosidase (GH125). This family, which contains bacterial and fungal glycoside hydrolases, is also known as GH125. They function as metal-independent alpha-mannosidases, with specificity for alpha-1,6-linked non-reducing terminal mannose residues. Structurally this family is part of the 6 hairpin glycosidase superfamily.	0
NZ_CP049858.1\|WP_166199068.1\|1514151_1515666_+\|RagB/SusD-family-nutrient-uptake-outer-membrane-protein	gnl\|CDD\|380159	NF033071, SusD, starch-binding outer membrane lipoprotein SusD. SusD (Starch Uptake System D) is an outer membrane lipoprotein that binds starch and participates in a TonB-dependent nutrient uptake complex. Related proteins from similar TonB-dependent complexes that import other, usually multimeric nutrient substrates include RagB and NanU.	3.36837e-42
NZ_CP049858.1\|WP_166199051.1\|1485714_1486980_-\|DUF2851-family-protein	gnl\|CDD\|378539	pfam11013, DUF2851, Protein of unknown function (DUF2851). This bacterial family of proteins has no known function.	7.37376e-179
NZ_CP049858.1\|WP_166199065.1\|1509277_1509808_+\|DUF5004-domain-containing-protein	gnl\|CDD\|374516	pfam16395, DUF5004, Domain of unknown function (DUF5004). This small family of proteins is functionally uncharacterized. This family is found in bacteroides. Proteins in this family are typically around 150 amino acids in length.	5.52564e-30
NZ_CP049858.1\|WP_166199056.1\|1498070_1498538_+\|DUF4252-domain-containing-protein	gnl\|CDD\|379445	pfam14060, DUF4252, Domain of unknown function (DUF4252). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 154 and 182 amino acids in length.	1.92327e-21
NZ_CP049858.1\|WP_166199069.1\|1515725_1516961_+\|hypothetical-protein	gnl\|CDD\|211416	cd11575, GH99_GH71_like_3, Uncharacterized glycoside hydrolase family 99-like domain. This family of putative glycoside hydrolases resembles glycosyl hydrolase families 71 and 99 (following the CAZY nomenclature) and may share a similar catalytic site and mechanism.	4.04178e-146
NZ_CP049858.1\|WP_166199063.1\|1504965_1506948_-\|glycoside-hydrolase-family-97-protein	gnl\|CDD\|371140	pfam10566, Glyco_hydro_97, Glycoside hydrolase 97. This domain is the catalytic region of the bacterial glycosyl-hydrolase family 97. This central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, form two additional non-catalytic domains. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands.	1.22524e-125
NZ_CP049858.1\|WP_166199067.1\|1511179_1514116_+\|TonB-dependent-receptor	gnl\|CDD\|274948	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family. This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate].	0
NZ_CP049858.1\|WP_166199060.1\|1500801_1501761_+\|alpha/beta-hydrolase	gnl\|CDD\|378820	pfam12146, Hydrolase_4, Serine aminopeptidase, S33. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The majority of the members in this family carry the exopeptidase active-site residues of Ser-122, Asp-239 and His-269 as in UniProtKB:Q7ZWC2.	5.05377e-11

>NZ_CP049858.1|WP_166199058.1|1499061_1499580_+|hypothetical-protein
MDIKDINKLLHSFYEGETSQEEEKILYKFFSDENIPEDMISEKRIFLQLYSAQENDAPLHLEEKLNALINNLEKKENNTQAHRIILPIKQMNKTWRWAMSIAASVLIVLSAGIFAYFGNSGNRNQMLVDTFSNPEEAYIETQKTLLLVSGKLNKGIQQVEKVNDIIDKDVHL
>NZ_CP049858.1|WP_166199057.1|1498568_1499072_+|RNA-polymerase-sigma-factor
MDAITFKEKYIPYHQKLYRVAYRLLEDACDAEDVVQEAYIKLWNKRDELTQVENSEAYCVILLRNLCLDFLRAKKKHLFQSTEDTVISDNLVLSDEIETVDEIKHIETIIDLLPEQQRKIIKLRHFDDYSNEEIEEIMGLTSVNVRVLMSRARKKVKELFNSYNYGY
>NZ_CP049858.1|WP_166199056.1|1498070_1498538_+|DUF4252-domain-containing-protein
MKKAIIYLFLFTLSLSASSKTLDDIFSEFSKAPHAENINLRKFLFSALKIANWDGKDFNKKVNSMSVLDLESCSPDIKLQFAEQIENLEMDGYEVLMKVKDDDDNVLIMSKSKKDKIKELVIITVNDPAIIRLKGDFTPNDLSDITQQYGEKKKD
>NZ_CP049858.1|WP_166199055.1|1496538_1497765_-|hypothetical-protein
MKKLFLRVFFSMITVFLYASCQNEEVGIESQDPNFVSQQDVLQLVSQLQMPVESGLRGTTIYEQKHVNSIVPVSGLNNNTASCYVVNYENGGFMVMSADNRIAPVLAFSESGELPLGEELPDGLVEWLEETSLYVEKVKKSDLKQSGNVKDAWAPQAIQRAISIGDPNIDGIDKNGECTSTYKVVEPLLKTTWGQGVGYNDLVATNILTGQCSAYSNGKPPAGCVAVAMAQIMKYHQHPKSYNWSAMFDNTGSNETARLMADIGSKVKMKYGCEGSSAHDDDATSAFKNNFGYSSAICTDFEIDRVVAELNSKRPVFLSGLKEKQIIITFPNGGHAWVCDGYRRSENCEYDTNGNFTGTIYMYTTLHMNWGWGYSGFVKYDGWFAYNDWKVAGSEYNYNKKMIYNIKP
>NZ_CP049858.1|WP_166199054.1|1496026_1496533_-|hypothetical-protein
MRKLMIYIAVLSLSINLISCDENENATNLDYGFACCVLDQNGNDLLDPLTSRAIDTSQIKIYHIINGEPILYYNPMGDAPKGYGITEPLMYANIAGFVFHTAMDWRVDANNRSITIIKWNESESDTITVLIEKTENSAIGIKYWINGNEDIDWINQGLKVAKIVKTRE
>NZ_CP049858.1|WP_166199053.1|1495527_1496025_-|hypothetical-protein
MQKRILYLLVLSLLVSLSCCSKDGDETNIDLNIDLFVLDQKGNDLLNFNSDNAMDLSQIRVFYRERGSFVEFYQSNLDAQRGYFLIPPNMIYDKYSLRLFVSPSIEYEDKSVTIIKWNDYESDTIITQIHKGENSEVGIEYWINGKTPDWIDRGRKISKIVKIKE
>NZ_CP049858.1|WP_166199052.1|1495046_1495526_-|hypothetical-protein
MQNRILYLLVLPLLSSLFSCDKQHLDPYSDLGFRSYVVDQNGNDLLNPNHENSIEISRVRAFYKKEGKMIEYEVSGICFFREPDISEDKYSVSVALSLYTDNEGKSVTIIRWNDYESDTIEVKISKKEYSIIATDYTLNSSAPNWVNKELKIAQIIKNR
>NZ_CP049858.1|WP_166112525.1|1493360_1494878_-|glutamine-hydrolyzing-GMP-synthase
MLEKIIILDFGSQTTQLIGRRVRELNTYCEIVPYNKFPKDDTTVKGVILSGSPFSVNDKDAFKADLSEIRKKYPVLGICYGAQFLAHTSEGKVEKGDSREYGRAHLVSMEQDPLFDGIAKGSQVWMSHGDTITVLPSTFDIIASTEDVKAAAYKIQGEQTWGVQFHPEVFHTVDGTKLLNNFLNICGCKKDWTPASFIESTVAELKAQLGNDKVILALSGGVDSSVTAVLLNKAIGKNLTCVFVDHGLLRKNEFERVQKDYEHLGLNVIGVNAKERFYKALAGVADPEEKRKIIGKGFIDVFDEEAHKLKDIKWLGQGTIYPDIIESLSITGTVIKSHHNVGGLPEKMNLKLVEPLKLLFKDEVRRIGLELGMMEHLIKRHPFPGPGLGIRVLGDITAEKVEILQNADDIYIKMLNEYHLYDKVWQAGAILLPVKSVGVMGDERTYEFTIALRAVTSTDAMTADWAHLPYEFLAKVSNEIINKVKGVNRVVYDISSKPPATIEWE
>NZ_CP049858.1|WP_166199051.1|1485714_1486980_-|DUF2851-family-protein
MEQLLHYVWKHRLFQSDLKTTDGILIEILDVGLHNTDEGPDFFNAKVKVGERVWVGNIEIHRSSDDWYKHQHDKNSVYNSVILHVVEFASGTVHNEAKLPIPQCEIKYPRHIKDNIEFLLNSDVSLPCCNYLKDYPSIHLQGWLNALLLERLERKSADIQKLLDRFNNSWADVFYVLLSRSMGFGLNSDAFERLALSLPLHYILKQGDNPLQIEALLFGQSGMLDDIDLSDDYTKKLHQEYSFLKNKYSLTPLDKEIFRKLRIRPTSSPHIRIAQLAGLLQNIQGLFSKILECKDLGQIRLLFHVNASEYWQTHYHLGEESPRKNKYIGDASLDVMIINAVVPVVFSYGRRLNDEQYVDRALNSLELIKPESNSIIKQFALYGIRTRSAYDTQALIQLKREYCEKRKCLYCRIGYKLLSAR
>NZ_CP049858.1|WP_166199050.1|1484333_1485551_-|hypothetical-protein
MEYYDLFKHLKDIESYDANEIEIDDNTVLRNYNFESNYRFILPGGSGNSDDYEYILSGTEHEYEPDIIQEMLNKKDAEILENIKFRYHVIAPKSTSKAKGVLLMFHGFNEKHWAKYLPWAKYIVEKTGKAVILFPIAFHMNRAPAAWSDTREMYSISEQRKKRHPDVISSSLSNVAISTRLHNKPQRFIWSGLQTYYDVIDLIEDIKANNHPTIDAQATIDVFSYSIGSFLSEILMMTNKNGYFSKSKFLSFCGGAVFNRLSPVSKFILDSEANVSLYSYVVEHLESHMKRDEVLRHYLGGVHPEGVNFRSMLNYKTLTKYRESKFREMSDRIYAITLREDTVVPAYEVINTLQGINRDIPIRVDILDFPYKYKHEDPFPALESIKKDVTEQFKRTFDLFCDFLK
>NZ_CP049858.1|WP_166199060.1|1500801_1501761_+|alpha/beta-hydrolase
MIRKNCTTNYINSVDGLRGITIYRRCLLLLLLLVSLNQVKAQSPEVTIEDVRFESEGVTLAGTIYTPRHSHAAVVIVHGSGQAPRMGEFASLLAKNGISVLTYDKRGVGESGGIYAGPEVGSNNVDADNLNLLAEDVSKAVNILHQRDKDTPIGLIGFSQAGWVIPIAANKNQLVDFMVLFSGAVIPTLDQLIFQHFTNGKSDFWDSHTEAEIREYMPKAREAVRNEPGRYQLDKFLSTDPLDALSTLSIPGLWLFGEKDIQIPIGISIEVLNALKVQGKPYEYCLFSTLGHDLTPIGTTQPIAIAIHWIKARKALHEK
>NZ_CP049858.1|WP_166199061.1|1501848_1503321_-|glycoside-hydrolase-family-125-protein
MVVKKNLTKKVLGLCVLSAISVGTIHASDYVLKPETAIVSDNTQVYVTNRPNPSDRLFESSAVENEIIRINKLLKNRRLAWMFENCFPNTLDTTVHYRVQDGKDDTFVYTGDIHAMWLRDSGAQVFPYVQLANKDPKLKKMLAGVIHRQTKSILIDPYANAFNDGAVADGHWMSDMTDMKPELHERKWEIDSLCYPIRLAYYYWKVTGDTSVFDADWVKAIELVLQTFKEQQRKDGVGPYKFMRVTERQLDTMSNDGLGNPVKPVGLIASAFRPSDDATTFQFLVPSNFFAVTSLREAAEILQTVKKNTTLANECTALANEVETALQKYAIYNHPTYGKIYAFEVDGFGNQLLMDDANVPSLLALAYLDADKINDPIYQNTRKFVWSEDNPYFFKGTAGEGIGGPHIGYDMIWPMSIMMKAFTSQDDAEIKACIQMLMATDAGTGFMHESFHKDDPTNFTRAWFAWQNTLFGELILKLVNEGKVDMLNSL
>NZ_CP049858.1|WP_166199062.1|1503397_1504591_-|alpha-1,6-mannanase
MLKQTIKCLLLSSLVFASVSCKKEAAKPANLNLERAQVTLDSLYAHYLADSTNLLRETYPFNDKYSATYLASEEQANIPNAYSYLWPFSGTFSAVNVLLETSKDKKYKDLLDSKVLPALEKYFDTTRTPYAYSSYISDAPQSDRFYDDNVWLGIDFTDVYMLTKEEAYLNKAKLIWDFVISGCDDKLGGGIYWCEQKKESKNTCSNAPGAVFALKLFKATNDSTYFSHGKNLYKWTKENLQDSTDYLYFDNIALNGNIGKAKYAYNSGQMIQAAALLYNLTNDKQYLTDAQNTAQSAYNYFFEDFKDEKGEQFKLLKKGDVWFSAVMLRGFIELYEIDKNPLYLDAFKKSLDYSWAHARDDKGLFDKDLSGKTKDESKWLLTQAAMVEMYARLAAIN
>NZ_CP049858.1|WP_166199063.1|1504965_1506948_-|glycoside-hydrolase-family-97-protein
MKNLLFSKKTCLILFSLLVYNFLGTISLFAQNIEVKSPNGEIKLTVSIKDKIYYSVDYNTEVLLNDCYLQLVLDNEVLGNDPKLTGEKRSVINENINPVVPLKYSTVNNHCNVLLLNFKGDYSVEFRAFNDGVAYRFITNRKKESIVKGEDFVINFPSEYLAHLQQQGGFKTAYEEKYTHVPTTQFVSEEKNLAVLPVLLDTKKQYKILISESDLSDYPCMFLKGTGSNGMQSTFPKAPLEFGEDGDRSLKIVKEADYIAKTSGKRTYPWRYFVITKDDKQLLENTMTLKLSPKNQLQNTAWIKPGQASWEWWNDASPYGPDVNFVAGYNLDTYKYYIDFASKYDIPYIIMDEGWAMSTRDPYTPNPKVDVHEIIRYGKEKNVGVILWLTWLVVENNFDVFKTVKDWGVKGLKIDFMDRSDQWMVNYYERVAKEAAKNELLVDFHGSFKPAGLEYAYPNVISYEGVRGMEQMGGCYPDNSIYLPFMRNAVGPMDYTPGAMISMQPEAYSAERPNAASIGTRAYQMALFVVFESGLQMLADNPTLYYRNEDCTRFITQVPTTWDETKVLEAKVGEYVIVAKRKGDKWFIGGITNNNEKERSFEVSLDFLNPGKSYQMTSFEDGINAGRQAMDYRKNEYTITKDEKIKLKMVRNGGWAAVIE
>NZ_CP049858.1|WP_166199064.1|1507367_1508978_+|hypothetical-protein
MKKLALVFCFILSYTLLYASSQDGSSTDELDKLIEKRDLYIQQKEDRINSLKKELSKLSDNTEKLEYYNSLFNEYKSYKYDSAYVYAHKCLDIAYLLKDSCKIIDAKEHIAFCYLSSGLFKEASDIMNSVDINNACEDVKKNYYTLLARLYFDMADYNNVEPFKSQYISEGNRYCDSAIVYTPQNSPELWSIKGLKLMQLRDFNGAIDMFLPLAQSSKGVDDHTYAIAASSLGFIYEELGDKQKAIHYMIEASIGDIKSATKETVALRNLANLLYETGDVHKANKYIRLAMEDANLYNARHRKISISSILPIIEKERFEMVEKQRNILIGSVLIISLLFLLLLGTTIIIYKQVKKLRLARHTIQEQNKKLLSTNSKLMEANKIKDEYITQSIYGDSEYIDRIEHIYKIVNRKIVARQYEDIRSFLKESDLRKERENMYSSFDQTFLKLFPDFVEEYKKLFLADDILDMDISKGLTPEIRIFALIRLGIHDSERIAKFLNYSVNTINTYKTKVKNKSIIANELFEQKIMEIKTVQTN
>NZ_CP049858.1|WP_166199065.1|1509277_1509808_+|DUF5004-domain-containing-protein
MRTLKYLYVFLLMVAVLPFVSCNDTDDGSFVAPITIYEKINGNWAVTSLKQIDEVAKANAQTPTEMTLTDQFGFSTFTINLNVDTNNEPTNYLIGGTAPKFFPTEGYWALEYPFQNTDGSASIINLYSDAAKTTQVAQLSVTAMPSTNKVLELKFSRKAKGVTFVSYVYQLSPAQQ
>NZ_CP049858.1|WP_166199066.1|1509921_1511055_+|hypothetical-protein
MKYITIALLTFVAILIPRNSFATEDVGAPARVWTYPVVYALDQEVTWYFDMTGTGFSEKQDLFLWAWSPSEPDAGNFDNSSDFAKLEYVSGMVWKKALTPTKYFSKTVADIEASSGFWMRLKGKGNEKQSDVVQAPWSVGDIKTFKESGEAVQIFPQRFYLDEPLSILVNAEKLWVGGTQSGLAGEEIFFHSGLNNFAAGAIVEANMGNPDLVKKTKLTPIGNNIYKIDFIPREYYGVGEDFVMENIEFLFPTRDWAKVGTNEGGKNFVILAPGVPIPLDPIFSFFPQKFSQYDILTLIRKNNEKNSQGLVYTITAGTKTITGEFTGNKDEMRAYINLFQSLSTELSIDKINLLVKDKNGAEIIKTDIPLVPLSDLN
>NZ_CP049858.1|WP_166199067.1|1511179_1514116_+|TonB-dependent-receptor
MKLYYKKYRLHLSPFLFMLALFIMSQQAFAQDISVTGTVTDTNKEPLTGVSIKVAGTSLGTVSDLDGHFTLSCPAGSTLDVSYIGFMNQKLPAQKNMTIVLSEDAVALQEAVVVSIGYGTMRKSDLTGAIASVSQNDLRQGVITSAEQLLQGKVAGLSVSQGSGDPAVGATMRLRGGTSLSAANAPLVVIDGIPGVDMNTVQPSEILSIDVLKDASAAAIYGSRGANGVVIVTTSRAASGVEKHTIEYNGFVAVGTVAKNMNLLSANQWRGYVRDNNVTSAIDYGANTDWQKELQRTAISQSHNLFFTNVNKNSGFSASMLYLDSEGIIDNSGLERLAGSLAAHQYGFDKHLKLEMGMTGSVDKWNPIDTRIFERAANLNPTVPVKDQNGNYTSIGGTNTENPVELNNNRFADDSRYRFLGYGKIEVELMKGLKATANGSYEYNSAQRRFYLPTYAMMEGQAEKGRGERTLADYRNMQLETFVTYDTHINTNHDLNFLAGYSYLNNMYEGFGATRRGFDTDAFLYNNLAAGGDYRAGDVYSYKGESSLVSFYGRANYNYMGRYMATATLRNDGSSRFGKNHKWGLFPSMSLAWRVSDEAFMQGATGWLDNLKLRLGYGVTGNQDGIGEYKSLSLLGADGASYYDATTGTWKKSYAPVQNVNPDLKWESTTQYNIGVDFGLFRRINATVEVYYKQTNDLLWTYPVPQPPNLVGTMLANVGTLSNKGVELSLNGNIMQGKDFSWDANFNISYNKQNIDKLSNESFQESGLKSGSLHGLRGLSGVYSQIIKEGLPAGAFYGPRCLGLDEEGKYVLNTDADGKPIDEYLGSAQPKVNLGFAMSATYKDFDMSVATYGMFGQKVLNATYMSMYDPTRLPAQNVPDKFLTSGIKSDPVFSDYWVEDGSFFRLQTLTVGYTVKYFKKWGLSKVRVYATGENLFTITGYSGVDPEVNTSGLESPGIDRFNFYPRPRTFSFGLNVAF
>NZ_CP049858.1|WP_166199068.1|1514151_1515666_+|RagB/SusD-family-nutrient-uptake-outer-membrane-protein
MKTKILSILVLTAFFSTSCTDLDEKLYDKVTTDDYGKTAAEIQTIVGGAYATLRGFNDSDKGGTICYPTCEYVFFLEECASDEATIPTRGTDWYDGGRYQQIQYHTWNANNIMILSAWKYCYQGIANVNSIIYQVDKSNLTDDDKAIVKAELRGIRAYYYYQLLDQFGSVPIVISFEESELPAKSPRADVFKFVEDELKDILDKLPSTIRYGGFTQNVANSLLARLYLNAEVYTGTPRWQDCINASEKVTGYILESDYFASFKTKNETSREIIFAIPYDYKVGTVGNYLASMTFHYNQRFAFSTTGAYPWCGNGISAQPGLYSSFDENDVRRGSLLIGEQKNLATGATIMMDNGNPLIYTEEFTKYTNALQNEGARLFKYQIQADDQWERDNDWVLIRYAEILMMKAEANFRLGFTANALIYVNEIRNRAGLPSLTTLTLENLDTEWKHEFVFEGLRRTTNIRFGTFFQPWWEKGATPRYRGVYPIPQTVLDLNPNLKQNPDYN
>NZ_CP049858.1|WP_166199069.1|1515725_1516961_+|hypothetical-protein
MKKTLFITLCLIPLFIFSNCGRDDLPIIKENPVEEFSPVSVTKTNPMKLYVHYMPWFETKASNNGTWGQHWTMANKNPDNTDANGKREIASHYYPLIGPYASGDENVIEYHLLLMKYSGVDGILIDWNGTRNLYDYASIKNNTEAIVKVLDKVGLNFAIVYEDQSLREGLQDAEKITQAKADMKYLESTFFSKENYIKINNKPLLMVFGPQEIKKPADWSSIFSVLKTKPTFLTLYAHSAGTANEGNIKNAEGEYIWVDATPMETKYAGKDVLMGGAYPGFNDFYKEGGWGESVLADIDYANGATFKNLLAMAKDKKVDYLQLITWNDFGEGTMIEPTQEFKYSYLTELQGFAGVSYNVSVLENIYKLHSLRETYKNDAKKLRTLNQAFYYFVSLQNDKAKGLIEEVEAIK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP049858_1	1.2\|1500515\|31\|NZ_CP049858\|CRISPRCasFinder	1500515-1500545	31	MN582103	Podoviridae sp. cty5g4, complete genome	51824-51854	6	0.806

1. spacer 1.2|1500515|31|NZ_CP049858|CRISPRCasFinder matches to MN582103 (Podoviridae sp. cty5g4, complete genome) position: , mismatch: 6, identity: 0.806

aaagagggcagaggagagagctaaaaatgga	CRISPR spacer
aatagaggcagaggaggcagctaaaaatgga	Protospacer
** ...**********. *************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

65689 : 137928

unidentified_phage(80.0%)

integrase,transposase

attL 125124:125139|attR 140558:140573

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_166197603.1\|65689_65875_-\|integrase	tyrosine-type recombinase/integrase	H7BUI8	unidentified_phage	4.0e-06	50.0
WP_166197605.1\|66164_67394_+\|integrase	site-specific integrase	H7BUI8	unidentified_phage	4.9e-23	26.9
WP_166197607.1\|67520_68744_+\|integrase	site-specific integrase	H7BUI8	unidentified_phage	1.5e-16	28.2
WP_166197609.1\|69201_69435_+	hypothetical protein	NA	NA	NA	NA
WP_166197611.1\|69637_69805_+	hypothetical protein	NA	NA	NA	NA
WP_166202583.1\|69823_70060_-	hypothetical protein	NA	NA	NA	NA
WP_166197613.1\|70291_73423_-	AAA family ATPase	NA	NA	NA	NA
WP_166197615.1\|73412_73973_-	hypothetical protein	NA	NA	NA	NA
WP_166197617.1\|73959_75234_-	hypothetical protein	NA	NA	NA	NA
WP_166197619.1\|75243_76299_-	Zn-dependent hydrolase	NA	NA	NA	NA
WP_166197621.1\|76921_77107_-	hypothetical protein	NA	NA	NA	NA
WP_166197623.1\|77317_79135_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	8.0e-30	29.6
WP_166197533.1\|79127_79268_-	hypothetical protein	NA	NA	NA	NA
WP_166197625.1\|79876_80155_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_166197627.1\|80568_80922_-	hypothetical protein	NA	NA	NA	NA
WP_166197629.1\|81158_81662_-	DUF3408 domain-containing protein	NA	NA	NA	NA
WP_166197631.1\|81661_82438_-	ParA family protein	NA	NA	NA	NA
WP_166197633.1\|83084_83579_+	hypothetical protein	NA	NA	NA	NA
WP_166197634.1\|83586_83946_+	MobC family plasmid mobilization relaxosome protein	NA	NA	NA	NA
WP_166197636.1\|83935_85225_+	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
WP_166197638.1\|86065_86611_-	hypothetical protein	NA	NA	NA	NA
WP_166197640.1\|86607_90036_-	RHS repeat-associated core domain-containing protein	NA	NA	NA	NA
WP_166197642.1\|90155_95465_-	hypothetical protein	NA	NA	NA	NA
WP_166197644.1\|95474_96611_-	T9SS type A sorting domain-containing protein	NA	NA	NA	NA
WP_166197646.1\|97149_97467_+	hypothetical protein	NA	NA	NA	NA
WP_166197648.1\|97738_98131_-	hypothetical protein	NA	NA	NA	NA
WP_166197650.1\|98406_99288_+	HEPN domain-containing protein	NA	NA	NA	NA
WP_166197652.1\|99536_105407_-	DUF3320 domain-containing protein	NA	NA	NA	NA
WP_166197654.1\|105644_106712_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_166197655.1\|107354_107684_-	hypothetical protein	NA	NA	NA	NA
WP_166197657.1\|107815_107962_-	hypothetical protein	NA	NA	NA	NA
WP_166197659.1\|108209_108527_-	hypothetical protein	NA	NA	NA	NA
WP_166197661.1\|109066_110203_+	T9SS type A sorting domain-containing protein	NA	NA	NA	NA
WP_166197663.1\|110199_115827_+	hypothetical protein	NA	NA	NA	NA
WP_166197665.1\|115938_119244_+	DUF4329 domain-containing protein	NA	NA	NA	NA
WP_166197667.1\|119246_119588_+	hypothetical protein	NA	NA	NA	NA
WP_166197669.1\|119968_120310_+	hypothetical protein	NA	NA	NA	NA
WP_166197671.1\|120775_121141_+	hypothetical protein	NA	NA	NA	NA
WP_166197673.1\|121234_121936_+	hypothetical protein	NA	NA	NA	NA
WP_166197675.1\|121935_122493_+	hypothetical protein	NA	NA	NA	NA
WP_166197677.1\|123405_123549_-	hypothetical protein	NA	NA	NA	NA
WP_166197679.1\|123680_123857_+\|transposase	transposase	NA	NA	NA	NA
WP_166197681.1\|124271_124994_-	hypothetical protein	NA	NA	NA	NA
WP_166197683.1\|124995_128043_-	N-6 DNA methylase	NA	NA	NA	NA
125124:125139	attL	NA	NA	NA	NA
WP_166197685.1\|128425_128809_-	hypothetical protein	NA	NA	NA	NA
WP_166197686.1\|128978_129155_-	hypothetical protein	NA	NA	NA	NA
WP_166197688.1\|129166_129289_-	hypothetical protein	NA	NA	NA	NA
WP_166197690.1\|129242_129587_-	hypothetical protein	NA	NA	NA	NA
WP_166197692.1\|129617_130892_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_166197694.1\|130969_131176_-	hypothetical protein	NA	NA	NA	NA
WP_166197696.1\|131366_131669_-	hypothetical protein	NA	NA	NA	NA
WP_166197698.1\|132200_133601_-	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
WP_166197700.1\|133604_133913_-	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA
WP_166197702.1\|134262_135474_-	helicase	NA	NA	NA	NA
WP_166197704.1\|135506_135776_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_166197706.1\|135885_136710_-	hypothetical protein	NA	NA	NA	NA
WP_166197708.1\|136716_137928_-\|integrase	site-specific integrase	H7BUI8	unidentified_phage	1.4e-30	37.6
140558:140573	attR	NA	NA	NA	NA

DBSCAN-SWA_2

4186727 : 4194226

Catovirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_166202236.1\|4186727_4187714_-	glycosyltransferase family 2 protein	A0A0F7L2F7	uncultured_marine_virus	1.0e-07	32.1
WP_166202238.1\|4187713_4188616_-	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	2.8e-15	40.7
WP_166202240.1\|4188625_4189465_-	FkbM family methyltransferase	NA	NA	NA	NA
WP_166202242.1\|4189494_4191012_-	glycosyltransferase	A0A2P1ELT8	Moumouvirus	1.2e-07	26.7
WP_166202244.1\|4191254_4192145_-	glycosyltransferase	A0A1V0SAH6	Catovirus	1.8e-06	30.2
WP_166202246.1\|4192172_4192928_-	FkbM family methyltransferase	H2EDQ1	Moumouvirus	2.3e-07	27.1
WP_166202248.1\|4192927_4194226_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	3.1e-12	26.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage