CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP046948	Microbulbifer sp. SH-1 chromosome, complete genome	4 crisprs	PD-DExK,csa3,DEDDh,RT,cas3,DinG,WYL	0	1	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP046948_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046948_1

122991-123086

Orphan

Consensus_repeat	Method
TGTAGGAGCCTGCCTGCAGGCGAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP046948_1

>merge|NZ_CP046948|1|122991-123086|CRISPRCasFinder
TGTAGGAGCCTGCCTGCAGGCGAACCCCCACCGGATGCGGAGCTGGAGCTCCGCACTCCCGTCGAGCCCAATGTAGGAGCCTGCCTTGCAGGCGAA

>NZ_CP046948|1|1|122991-123086|CRISPRCasFinder
TGTAGGAGCCTGCCTGCAGGCGAAC	CCCCACCGGATGCGGAGCTGGAGCTCCGCACTCCCGTCGAGCCCAA
TGTAGGAGCCTGCCTTGCAGGCGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046948.1\|WP_166214772.1\|120176_121337_+\|outer-membrane-protein-assembly-factor-BamB	unknown	unknown	gnl\|CDD\|274511
NZ_CP046948.1\|WP_166214788.1\|129968_130262_-\|HigA-family-addiction-module-antidote-protein	unknown	unknown	gnl\|CDD\|274228
NZ_CP046948.1\|WP_166214762.1\|112411_112606_+\|Fe-S-cluster-assembly-protein-IscX	unknown	unknown	gnl\|CDD\|377339
NZ_CP046948.1\|WP_166214790.1\|130581_131466_-\|prepilin-peptidase	unknown	unknown	gnl\|CDD\|224900
NZ_CP046948.1\|WP_166214776.1\|123109_124567_+\|NAD-dependent-succinate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143421
NZ_CP046948.1\|WP_166214766.1\|115456_116509_+\|DUF4115-domain-containing-protein	unknown	unknown	gnl\|CDD\|236776
NZ_CP046948.1\|WP_166214784.1\|127787_128885_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046948.1\|WP_166214792.1\|131479_132694_-\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|224376
NZ_CP046948.1\|WP_166214774.1\|121508_122903_+\|ribosome-biogenesis-GTPase-Der	unknown	unknown	gnl\|CDD\|234628
NZ_CP046948.1\|WP_166220233.1\|129158_129782_-\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|234620
NZ_CP046948.1\|WP_138235854.1\|112866_113292_+\|nucleoside-diphosphate-kinase	unknown	unknown	gnl\|CDD\|179085
NZ_CP046948.1\|WP_166214778.1\|124916_125624_+\|tRNA-(N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase-TrmO	unknown	unknown	gnl\|CDD\|376698
NZ_CP046948.1\|WP_138235994.1\|114684_115470_+\|type-IV-pilus-biogenesis/stability-protein-PilW	unknown	unknown	gnl\|CDD\|131573
NZ_CP046948.1\|WP_138235857.1\|116716_117838_+\|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	unknown	unknown	gnl\|CDD\|234737
NZ_CP046948.1\|WP_166214786.1\|128922_129144_-\|DNA-gyrase-inhibitor-YacG	unknown	unknown	gnl\|CDD\|367713
NZ_CP046948.1\|WP_166214782.1\|126476_127763_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046948.1\|WP_166214780.1\|125620_126118_+\|protein-disulfide-oxidoreductase	unknown	unknown	gnl\|CDD\|239309
NZ_CP046948.1\|WP_166214768.1\|118108_119371_+\|histidine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234586
NZ_CP046948.1\|WP_166214770.1\|119418_120180_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|370767
NZ_CP046948.1\|WP_166214764.1\|113435_114617_+\|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN	unknown	unknown	gnl\|CDD\|183031

Protein	Function_ID	Function_description	E-value
NZ_CP046948.1\|WP_166214772.1\|120176_121337_+\|outer-membrane-protein-assembly-factor-BamB	gnl\|CDD\|274511	TIGR03300, assembly_YfgL, outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking].	3.75749e-139
NZ_CP046948.1\|WP_166214788.1\|129968_130262_-\|HigA-family-addiction-module-antidote-protein	gnl\|CDD\|274228	TIGR02607, Virulence-associated_protein_I, addiction module antidote protein, HigA family. Members of this family form a distinct clade within the larger family HTH_3 of helix-turn-helix proteins, described by pfam01381. Members of this clade are strictly bacterial and nearly always shorter than 110 amino acids. This family includes the characterized member HigA, without which the killer protein HigB cannot be cloned. The hig (host inhibition of growth) system is noted to be unusual in that killer protein is uncoded by the upstream member of the gene pair. [Regulatory functions, DNA interactions, Regulatory functions, Protein interactions, Mobile and extrachromosomal element functions, Other].	2.3657e-37
NZ_CP046948.1\|WP_166214762.1\|112411_112606_+\|Fe-S-cluster-assembly-protein-IscX	gnl\|CDD\|377339	pfam04384, Fe-S_assembly, Iron-sulphur cluster assembly. This family of proteins is likely to be involved in the assembly of iron-sulphur clusters. It may function as an adaptor protein. In Escherichia coli IscX forms part of the isc operon, which encodes genes involved in iron-sulphur cluster assembly. Its structure is entirely alpha helical, and it contains a modified wing-helix structure, usually found in DNA-binding proteins. It binds to Fe2+ and Fe3+ ions and to the cysteine desulfurase IscS, the same surface of the protein is involved in both binding to iron and to IscS.	5.60493e-34
NZ_CP046948.1\|WP_166214790.1\|130581_131466_-\|prepilin-peptidase	gnl\|CDD\|224900	COG1989, PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	5.7606e-50
NZ_CP046948.1\|WP_166214776.1\|123109_124567_+\|NAD-dependent-succinate-semialdehyde-dehydrogenase	gnl\|CDD\|143421	cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like. Succinate-semialdehyde dehydrogenase, mitochondrial (SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent oxidation of succinate semialdehyde (SSA) to succinate. This group includes the human aldehyde dehydrogenase family 5 member A1 (ALDH5A1) which is a mitochondrial homotetramer that converts SSA to succinate in the last step of 4-aminobutyric acid (GABA) catabolism. This CD also includes the Arabidopsis SSADH gene product ALDH5F1. Mutations in this gene result in the accumulation of H2O2, suggesting a role in plant defense against the environmental stress of elevated reactive oxygen species.	0
NZ_CP046948.1\|WP_166214766.1\|115456_116509_+\|DUF4115-domain-containing-protein	gnl\|CDD\|236776	PRK10856, PRK10856, cytoskeleton protein RodZ.	6.60893e-29
NZ_CP046948.1\|WP_166214792.1\|131479_132694_-\|type-II-secretion-system-F-family-protein	gnl\|CDD\|224376	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion].	6.62341e-147
NZ_CP046948.1\|WP_166214774.1\|121508_122903_+\|ribosome-biogenesis-GTPase-Der	gnl\|CDD\|234628	PRK00093, PRK00093, GTP-binding protein Der; Reviewed.	0
NZ_CP046948.1\|WP_166220233.1\|129158_129782_-\|dephospho-CoA-kinase	gnl\|CDD\|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	3.47395e-91
NZ_CP046948.1\|WP_138235854.1\|112866_113292_+\|nucleoside-diphosphate-kinase	gnl\|CDD\|179085	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated.	2.51807e-93
NZ_CP046948.1\|WP_166214778.1\|124916_125624_+\|tRNA-(N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase-TrmO	gnl\|CDD\|376698	pfam01980, UPF0066, Uncharacterized protein family UPF0066.	2.27767e-70
NZ_CP046948.1\|WP_138235994.1\|114684_115470_+\|type-IV-pilus-biogenesis/stability-protein-PilW	gnl\|CDD\|131573	TIGR02521, Uncharacterized_protein_HI_0366, type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.	3.96393e-55
NZ_CP046948.1\|WP_138235857.1\|116716_117838_+\|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	gnl\|CDD\|234737	PRK00366, ispG, flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase.	0
NZ_CP046948.1\|WP_166214786.1\|128922_129144_-\|DNA-gyrase-inhibitor-YacG	gnl\|CDD\|367713	pfam03884, YacG, DNA gyrase inhibitor YacG. YacG inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. It acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase. YacG has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins. The conserved four cysteine motif in this protein (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.	3.9423e-26
NZ_CP046948.1\|WP_166214780.1\|125620_126118_+\|protein-disulfide-oxidoreductase	gnl\|CDD\|239309	cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.	1.21407e-52
NZ_CP046948.1\|WP_166214768.1\|118108_119371_+\|histidine--tRNA-ligase	gnl\|CDD\|234586	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed.	0
NZ_CP046948.1\|WP_166214770.1\|119418_120180_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|370767	pfam09976, TPR_21, Tetratricopeptide repeat-like domain. This family resembles a single unit of a TPR repeat.	8.60191e-58
NZ_CP046948.1\|WP_166214764.1\|113435_114617_+\|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN	gnl\|CDD\|183031	PRK11194, PRK11194, ribosomal RNA large subunit methyltransferase N; Provisional.	0

>NZ_CP046948.1|WP_166214774.1|121508_122903_+|ribosome-biogenesis-GTPase-Der
MLPVIALVGRPNVGKSTLFNRLTKTRDALVANYAGLTRDRKYGEAEFEGRKMILVDTGGISGGEEGIDAAMAQQSMQAIEEADFVLFMVDCRAGLTPADEMIAERLRVRSKPTILVANKVDGVNPDIALSPFYELGIGELFPTTATHGRGVRALMERLIEGLPAPEEEEEKEEAKGIKIGIVGRPNVGKSTLVNRLLGEDRVVVFDQPGTTRDSVYINYTRDDKPYTIIDTAGIRRRKNVKESVEKFSIVKTLQAVEDSNVVVLVIDASEGLVDQDLHLMGSVIQAGRALVVALNKWDGLDPDHRDFIKTELERRLRFVDFADIHFISALHGTGVGNLYQSIEAAYQSATDKLSTNHLTRILQWAVSEHQPPLVNGNRIKLRYAHAGGKNPPIIVIHGNQTDEVPGHYVRYLEKTFRQALGLHGTPVKIEFRTGKNPYEGKKNKLSDRQKAKKRRLMKFVKKKK
>NZ_CP046948.1|WP_166214772.1|120176_121337_+|outer-membrane-protein-assembly-factor-BamB
MIGTHKALNRIIAVALAAVLGACASNEEKEDTDPVELTEIQESVRLREVWSNNIGDIDALRYAMLKPGIIDGKVIAANSEGDVYAFDRTSGKRVWRTNIEQSISGGVGVGLGMAVVADYRGRVVALDLNDGSQRWSTQLSGEVVSTPAVGAGMVVVQTVDGKLLGLDASTGEQRWRHNTVLPVLTLRGTASPVISAGVVFAGLDNGKLIALSASDGISRWEQRVAIPQGSAELERVVDIDGAPLVRGELVFAASYQGRVVALSREDGRGLWARDASTNHSVTVGAGQVFLSGADGSVHAYNVGNGQIQWSNNELLRRELSGPAYFGDVVVVGDLEGYLHALDPNTGRFVGRTRIDRDPVRIPLLADGDLLFALSDDGELVALRLER
>NZ_CP046948.1|WP_166214770.1|119418_120180_+|tetratricopeptide-repeat-protein
MADHLTEEEQIESLKRWWKENGTGIVTGVVLALAAYFGWQWWQGKQRAEAEAASNVYQGFVEAVSANEGQPDNKQLTTAQSLARELKDNFANRIYASQAALQLAALAVEKNDLEEATKQLQWALDNTSEDALKFVAKRRLAAVKAARGETGEALKLLEGDVPAAFAALFAETRGDILVQQGDNDAARTAYQQARAQLLPEQAAGSRLLDLKIESLGGAEEQTDETQEEPPVSESDSDSQSDNATEAATEKDAQ
>NZ_CP046948.1|WP_166214768.1|118108_119371_+|histidine--tRNA-ligase
MKELRAIRGMNDLQPTQSPVWQYVESTLSELFARYGYSEIRTPILEATQLFARAVGEGTDIVEKEMYTFDDKGGDSVTLRPEGTAGTVRAAIQNGLLNQPQRLWYFGPMFRYERPQKGRLRQFHQFGVEVFGIEGPDIDAEILMMTARLWKQLGVSEHVTLQLNSLGNSESRAAFRDALVEYLSARKDQLDEDSQRRLDKNPLRILDSKNPDTQALLEDAPCLLDYLDDESRTHFDQLRTFLDAAGVAYEVNPRLVRGLDYYGKTVFEWVTDSLGAQGTVCAGGRYDGLVEQMGGKSTPAVGFGLGVERLVLLLETLEVLPDTLDQQIDAYLVAVGDVQSAALAAAETLRTELPWLRLQTHCGGGSFKSQMKKADKSNAEYALIIGEDEAAAGQVTVKSLRADAEQQTVALADLPKILQA
>NZ_CP046948.1|WP_138235857.1|116716_117838_+|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase
MQFESPIVRRVSRQIMVGNVPVGGGAPISVQSMTNTETCDVAATVEQIQRLEKAGADIVRVSVPSMEAAEAFGEIKKQVNVPLVADIHFDYRIALRVADLGVDCLRINPGNIGREHRIRAVVDKARDLNIPIRIGVNAGSLEKDLQKKYGEPTPDALVESALRHVDILDSLDFQNFKVSVKASDIFMATAAYRKLAAQIDQPLHLGITEAGGLRAGTVKSAIGLGALLLDGIGDTLRVSLAADPVEEVKVGWDLLKSLRLRTKGINFIACPSCSRQNFDVVKTMNELETRLEDITTPLDVAVIGCIVNGPGEAKEADIGLAGGTPSHAIYVDGQPDRKFKNDNLVDDLEKLIREKAAAKAAQEASIIARETTE
>NZ_CP046948.1|WP_166214766.1|115456_116509_+|DUF4115-domain-containing-protein
MSSSNQISDPQETTSTDTPAITVGIMLREARDKAGFTRDELARRLCMTPDKLEALEQDAFERFAGTTYVRGYIRNLCKELGLDATVVMEAFARQMPVEVAAEPARAPVGAVLSSRRERRRGSLSAPLILVLALAAGGGFWWFDQQAGDGSQLVRVDGAQDRDDSELLATASRYSAEVDISEEAAEVAFPTVQSVETSEALTDINEERAAAPEVDDGAPETDAELADVVPPDVENSAAEALHPVAERSAEVPSGVAPVAAAETVEAPSEAGTAPRLVISFQGESWLEVTDATGYKMIAKLQPAGSTVELNGRAPFSVMLGNAAAATITFDGQVVDSAPIGNRRTRKLSVGG
>NZ_CP046948.1|WP_138235994.1|114684_115470_+|type-IV-pilus-biogenesis/stability-protein-PilW
MFARISSPAVLAGLLLSLLLGGCVSSGPGKSVDLDKARETHIQLGLRYLQSGSENRELARHHFQKALELGRKDPQAHHGLALLYQADKENAVAESHFKKALRYDSKFSMARVNYGAFLYQQERYRDAKAQFQVASEDLTYNRRSYALANLGRAELRLGESDAAEAAFMKALSLSPNMSLAQLELAELKFAKGDYAQAKQYLDRYSDKNRQVPQSLWLGIRIEKIFGNRDKERSYALALKNLFPYSAETLKYQQMMAENEQQ
>NZ_CP046948.1|WP_166214764.1|113435_114617_+|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN
MSDVQTVQASTESAEQTEKVNLLGLSVDKLAAFFDGLGEKRFRAVQVLKWIHQNGADDFEQMTNVSKALRAKLAEVAEIRAPKVLKQMDSADGTRKWLIEVTGGNVIETVFIPDGERGTLCVSSQVGCSLDCSFCATGKQGFNRDLTAAEIIGQVWIACKSFGQLQPPVKKQERPRKVTNVVMMGMGEPLLNFDNVVDAMNLMMEDNAYGISKRRVTLSTSGVVPALDRLAEVTDVSLAISLHAPNDELRNELVPINKKYPIAMLLDSAKRYIESMPDNHRKMTIEYTMIRDVNDRPEHAEQLGELLRDVPVKINLIPFNPFELSDYQRVSNNALRRFQQILLDKGYTVTVRTTRGDDIAAACGQLAGQVNDRTRRSERYRNAERPVRIVGQA
>NZ_CP046948.1|WP_138235854.1|112866_113292_+|nucleoside-diphosphate-kinase
MALERTLSIIKPDAVAKNVIGEIESRFEKAGLRIVAMKMVQLSREKAEGFYAEHKERPFFKDLVDFMTSGPVVVQVLEGENAVKANRDLMGATNPKEAEAGTIRADFAESIDANAVHGSDSTTSAEREVSYFFSAEEICAR
>NZ_CP046948.1|WP_166214762.1|112411_112606_+|Fe-S-cluster-assembly-protein-IscX
MKWTDIHDIAIELADNYPDVDPLAANFVDLRKWVMELPDFDDDPNRCGEKILEAIQAAWIEENE
>NZ_CP046948.1|WP_166214776.1|123109_124567_+|NAD-dependent-succinate-semialdehyde-dehydrogenase
MLNLNNPNLLRKQSYINGEWRDADSGNTLDVINPATGEIVATIASCGADDTRRAIEAADKAWPAWRNRTVKERAKILRDWYNLIVDNVDDLAKILTAEQGKPLSEARTEIIYGANYLEWFAEEAKRAYGDVIAPPSKDKRIVVIKQPVGVTASITPWNFPSAMIARKLAPALAAGCTFVAKPASETPLSALALAVLAEQAGVPKGVFNVVVGKSSREIGKEMTSNPLVRKFTFTGSTAVGKQLQAQCAETMKKTSMELGGNAPFIVFDDADIDEAVKGAIICKYRNAGQTCVCANRILVQAGVYEVFAKKFTAAVQALNVGNGFDEGTDVGPMINPGAVKDVKELVEDALSKGAKALSEGGPSDLGECFFTPTVLADANDTMRLFKEEIFGPVAPLFKFDSEEEAIRMANDTEFGLASYFYARDIGRIWRVAEGLEYGMVGINEGIISNEMAPFGGIKESGSGREGSKYGIDDYLEIKYLCMGGI
>NZ_CP046948.1|WP_166214778.1|124916_125624_+|tRNA-(N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase-TrmO
MTIIPIATTHSCFKEKFGIPRQPLLADASRASIELLPPFDDPEAVSGLEQHSHLWLTWHFHDVAGQWSPKVRPPRLGGNKKLGVFATRSPFRPNNIGLSVVRLIEVRTTPNVELIVAGADLLDGTPILDIKPYIPYADAVTDAHSELAEAAPASIAVNIPEAVLAVARDYRDDWGTDLSELIRQVLAQDPKPAYQQPDPERIYGMALCGFNLQWRYVNGGIEVLGLNTLNPETQP
>NZ_CP046948.1|WP_166214780.1|125620_126118_+|protein-disulfide-oxidoreductase
MKWRRGLWSLVKFVLFAAAIVSVVSWYHSRNMPKGTAPALVAPDINGLPINLQAMTSKGPVLVYFWATWCGYCRVVSPAVSELAEDHQVITIALQSGTPEEVATYQQQHNLNFRTINDPQGALSASWGLQVTPTVAIIDREGRVSAVTSGMSSKWGLKARLWLAD
>NZ_CP046948.1|WP_166214782.1|126476_127763_+|hypothetical-protein
MGQLPAAQTSNTLQAWGKRDSGRAIFANGSQRQILDNFRQLSTQQSSAGYHAQALIKAVDSLRGAASPVNSMLKPNHPTRRLLVAGGFEIEYELNSYYGDCQTDVEIVAIRMVVGDAKGRNRTALWQIAPNEQGPFTFPTKPSPQLKPTATQSGSASAPIKVGINGHIGEAEKSVAILAEHIGRGDKAKLTALRKSGFQFLYIPPESNAWISGWRTLKSLGNQGSEQQQKAARILAQHMLEAHQQGLHVEWTSQGEGAWVLIEAMELLGPRQIDLQQRQKIFLSDHTRNRFTADRARRKLNMDTQDDKWHNAAPGLKQTIGGEQLGLAPLLSVGSDLLYHTPREERLGKSVSLAWQTGDYLIKKWGMTGMAAGLAASTGGSAALAAAVVKALHKLTPTVVASLPGACNHYFKSTGDQLQQLINKSNKP
>NZ_CP046948.1|WP_166214784.1|127787_128885_+|hypothetical-protein
MWLGNEQNPKGPSWRRARSVRKNVSGTQIRLQAPPVRPNKSTLRAWYLETEPDHFDLASTDTLEPIDYQSVKPAGSERADRRVTIWSSGWSFSGRPLLDGGSLGELRVNLVVEEVGDLPVNCSLFRREDLLRYARGYFSEGWLGSYHEGYGEEQDTFDITEYHWPCFLAPLNAQWLERNDQYWLYFEAQPLRIGPDEFYWLYPIGHRRCLRVSFAVSRWLSNAGNPYRKQRSPLTNYLRLMENIMSTIVVELSESAAREKASIHNSGDHFPLFHCSEAQVNDAKHTLYMWSGAEYRDKSQPKEGGDHRAPKEDVAAFIDERIKPRPLPGCLAIGPAFIENDNFGELGSEAAVEIATPLARAGNQH
>NZ_CP046948.1|WP_166214786.1|128922_129144_-|DNA-gyrase-inhibitor-YacG
MSDHSSSDTPTLACPTCKKPIEWSEKFPHRPFCSERCKLIDLGEWASEGHKIPGQPVYDDVLSDDLDPTKTRH
>NZ_CP046948.1|WP_166220233.1|129158_129782_-|dephospho-CoA-kinase
MSTPRFTVGLTGGIGSGKSAAAARFRHHGVNVVDADWAARVVVEPGRPALVAIAEHFGPSVIQADGSLDRAALRKLVFDNPAERRWLEQLTHPLIREEIVTSLAASAQTHSAPYAILESPLLIESGQSELVQRICVVDLPEAMQLARASARDANTLEQIRKIMAAQLSREARCAMADDILDNSGSLESLNAQVDALHAKYVQLASQS
>NZ_CP046948.1|WP_166214788.1|129968_130262_-|HigA-family-addiction-module-antidote-protein
MTMHNPPHPGEFIQFTYMEPFGISCRFLAVKLDVAASTLNRVLKGQSGVSPEMALRLSKALGRSPESWLAMQDAYDLWQARKHVQLNKVQRLELDAA
>NZ_CP046948.1|WP_166214790.1|130581_131466_-|prepilin-peptidase
MFEYFSSHPALLISSAFVLGLLIGSFLNVVIHRLPIMMEREYQRDFYSYFEKTPSAEEQKQLSETYNLVLPHSHCPKCNTVIKPWENIPIVSYLWLRGKCGHCGTAISKRYPLVELVTGILTAIVVWQLGFTWQALAGVFFTWALVALTGIDFDKQLLPDNITLPLLWAGLLINIWGVFVPLQDAVIGAIVGYLSLWAVFHLFKLVTGKEGMGAGDFKILAAIGAWFGWQSVLLVIPLSAAVGALVGITWTLVSGRDKNLPIAFGPYLAGAAWIAMLWGEQIVGWYFRISGLSG
>NZ_CP046948.1|WP_166214792.1|131479_132694_-|type-II-secretion-system-F-family-protein
MAKAAVAVAYIYKGVDAKGNKVEGEINSTNPALIKAQLRRQGIIANKVQKKATPLFGGNKKIKPGDIAIFTRQMATMMKAGVPLVQSFEIVADGLENAGMKELIFKIRDDVASGTAFADSLRRHSLYFDDLFCNLVASGEQSGALETMLDRIATYKEKTESLKKKIKKAMTYPIAVVVVAVVVTAILLVKVVPQFAETFSSFGADLPAFTLFVLGISEWMQANWFYAFLGVVVGIGGTIEVKKRNKNVANFFDKLMLKLPILGQITYNSIAARFARTLSTTFAAGVPLIDALKSVAGATGNVVYEEATLKIRDSVATGIPLNGAMRVSGLYPSMLVQMAAIGEESGALDEMLAKAADFYEEAVDNLVDNLTTLMEPMIMAVLGILVGGLMIAMYLPIFQLGQVV

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Crispr_ID: NZ_CP046948_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046948_2

126187-126274

Orphan

Consensus_repeat	Method
CTCCGCTCTCCGTCATACCGGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP046948_2

>merge|NZ_CP046948|2|126187-126274|CRISPRCasFinder
CTCCGCTCTCCGTCATACCGGCGCACACGTCATGCCGGACTTGATCCGGTACGGTATCCAGCCCCCTCCGCTCTCCGTCATACCGGCG

>NZ_CP046948|2|2|126187-126274|CRISPRCasFinder
CTCCGCTCTCCGTCATACCGGCG	CACACGTCATGCCGGACTTGATCCGGTACGGTATCCAGCCCC
CTCCGCTCTCCGTCATACCGGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046948.1\|WP_166214772.1\|120176_121337_+\|outer-membrane-protein-assembly-factor-BamB	unknown	unknown	gnl\|CDD\|274511
NZ_CP046948.1\|WP_166214788.1\|129968_130262_-\|HigA-family-addiction-module-antidote-protein	unknown	unknown	gnl\|CDD\|274228
NZ_CP046948.1\|WP_166214782.1\|126476_127763_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046948.1\|WP_166214790.1\|130581_131466_-\|prepilin-peptidase	unknown	unknown	gnl\|CDD\|224900
NZ_CP046948.1\|WP_138235857.1\|116716_117838_+\|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	unknown	unknown	gnl\|CDD\|234737
NZ_CP046948.1\|WP_166214766.1\|115456_116509_+\|DUF4115-domain-containing-protein	unknown	unknown	gnl\|CDD\|236776
NZ_CP046948.1\|WP_166214792.1\|131479_132694_-\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|224376
NZ_CP046948.1\|WP_166214774.1\|121508_122903_+\|ribosome-biogenesis-GTPase-Der	unknown	unknown	gnl\|CDD\|234628
NZ_CP046948.1\|WP_166220233.1\|129158_129782_-\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|234620
NZ_CP046948.1\|WP_166214778.1\|124916_125624_+\|tRNA-(N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase-TrmO	unknown	unknown	gnl\|CDD\|376698
NZ_CP046948.1\|WP_138235994.1\|114684_115470_+\|type-IV-pilus-biogenesis/stability-protein-PilW	unknown	unknown	gnl\|CDD\|131573
NZ_CP046948.1\|WP_166214776.1\|123109_124567_+\|NAD-dependent-succinate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143421
NZ_CP046948.1\|WP_166214786.1\|128922_129144_-\|DNA-gyrase-inhibitor-YacG	unknown	unknown	gnl\|CDD\|367713
NZ_CP046948.1\|WP_166214780.1\|125620_126118_+\|protein-disulfide-oxidoreductase	unknown	unknown	gnl\|CDD\|239309
NZ_CP046948.1\|WP_166214794.1\|132745_134455_-\|type-IV-A-pilus-assembly-ATPase-PilB	unknown	unknown	gnl\|CDD\|274186
NZ_CP046948.1\|WP_166214768.1\|118108_119371_+\|histidine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234586
NZ_CP046948.1\|WP_166214798.1\|135437_137186_+\|DUF393-domain-containing-protein	unknown	unknown	gnl\|CDD\|367833
NZ_CP046948.1\|WP_166214784.1\|127787_128885_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046948.1\|WP_166214796.1\|134931_135387_+\|pilin	unknown	unknown	gnl\|CDD\|227304
NZ_CP046948.1\|WP_166214770.1\|119418_120180_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|370767

Protein	Function_ID	Function_description	E-value
NZ_CP046948.1\|WP_166214772.1\|120176_121337_+\|outer-membrane-protein-assembly-factor-BamB	gnl\|CDD\|274511	TIGR03300, assembly_YfgL, outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking].	3.75749e-139
NZ_CP046948.1\|WP_166214788.1\|129968_130262_-\|HigA-family-addiction-module-antidote-protein	gnl\|CDD\|274228	TIGR02607, Virulence-associated_protein_I, addiction module antidote protein, HigA family. Members of this family form a distinct clade within the larger family HTH_3 of helix-turn-helix proteins, described by pfam01381. Members of this clade are strictly bacterial and nearly always shorter than 110 amino acids. This family includes the characterized member HigA, without which the killer protein HigB cannot be cloned. The hig (host inhibition of growth) system is noted to be unusual in that killer protein is uncoded by the upstream member of the gene pair. [Regulatory functions, DNA interactions, Regulatory functions, Protein interactions, Mobile and extrachromosomal element functions, Other].	2.3657e-37
NZ_CP046948.1\|WP_166214790.1\|130581_131466_-\|prepilin-peptidase	gnl\|CDD\|224900	COG1989, PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	5.7606e-50
NZ_CP046948.1\|WP_138235857.1\|116716_117838_+\|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	gnl\|CDD\|234737	PRK00366, ispG, flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase.	0
NZ_CP046948.1\|WP_166214766.1\|115456_116509_+\|DUF4115-domain-containing-protein	gnl\|CDD\|236776	PRK10856, PRK10856, cytoskeleton protein RodZ.	6.60893e-29
NZ_CP046948.1\|WP_166214792.1\|131479_132694_-\|type-II-secretion-system-F-family-protein	gnl\|CDD\|224376	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion].	6.62341e-147
NZ_CP046948.1\|WP_166214774.1\|121508_122903_+\|ribosome-biogenesis-GTPase-Der	gnl\|CDD\|234628	PRK00093, PRK00093, GTP-binding protein Der; Reviewed.	0
NZ_CP046948.1\|WP_166220233.1\|129158_129782_-\|dephospho-CoA-kinase	gnl\|CDD\|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	3.47395e-91
NZ_CP046948.1\|WP_166214778.1\|124916_125624_+\|tRNA-(N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase-TrmO	gnl\|CDD\|376698	pfam01980, UPF0066, Uncharacterized protein family UPF0066.	2.27767e-70
NZ_CP046948.1\|WP_138235994.1\|114684_115470_+\|type-IV-pilus-biogenesis/stability-protein-PilW	gnl\|CDD\|131573	TIGR02521, Uncharacterized_protein_HI_0366, type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.	3.96393e-55
NZ_CP046948.1\|WP_166214776.1\|123109_124567_+\|NAD-dependent-succinate-semialdehyde-dehydrogenase	gnl\|CDD\|143421	cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like. Succinate-semialdehyde dehydrogenase, mitochondrial (SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent oxidation of succinate semialdehyde (SSA) to succinate. This group includes the human aldehyde dehydrogenase family 5 member A1 (ALDH5A1) which is a mitochondrial homotetramer that converts SSA to succinate in the last step of 4-aminobutyric acid (GABA) catabolism. This CD also includes the Arabidopsis SSADH gene product ALDH5F1. Mutations in this gene result in the accumulation of H2O2, suggesting a role in plant defense against the environmental stress of elevated reactive oxygen species.	0
NZ_CP046948.1\|WP_166214786.1\|128922_129144_-\|DNA-gyrase-inhibitor-YacG	gnl\|CDD\|367713	pfam03884, YacG, DNA gyrase inhibitor YacG. YacG inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. It acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase. YacG has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins. The conserved four cysteine motif in this protein (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.	3.9423e-26
NZ_CP046948.1\|WP_166214780.1\|125620_126118_+\|protein-disulfide-oxidoreductase	gnl\|CDD\|239309	cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.	1.21407e-52
NZ_CP046948.1\|WP_166214768.1\|118108_119371_+\|histidine--tRNA-ligase	gnl\|CDD\|234586	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed.	0
NZ_CP046948.1\|WP_166214798.1\|135437_137186_+\|DUF393-domain-containing-protein	gnl\|CDD\|367833	pfam04134, DUF393, Protein of unknown function, DUF393. Members of this family have two highly conserved cysteine residues near their N-terminus. The function of these proteins is unknown.	4.37495e-08
NZ_CP046948.1\|WP_166214794.1\|132745_134455_-\|type-IV-A-pilus-assembly-ATPase-PilB	gnl\|CDD\|274186	TIGR02538, Type_IV_pilus_assembly_protein_PilF, type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems. [Cell envelope, Surface structures, Protein fate, Protein and peptide secretion and trafficking].	0
NZ_CP046948.1\|WP_166214796.1\|134931_135387_+\|pilin	gnl\|CDD\|227304	COG4969, PilA, Tfp pilus assembly protein, major pilin PilA [Cell motility and secretion / Intracellular trafficking and secretion].	1.07909e-20
NZ_CP046948.1\|WP_166214770.1\|119418_120180_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|370767	pfam09976, TPR_21, Tetratricopeptide repeat-like domain. This family resembles a single unit of a TPR repeat.	8.60191e-58

>NZ_CP046948.1|WP_166214780.1|125620_126118_+|protein-disulfide-oxidoreductase
MKWRRGLWSLVKFVLFAAAIVSVVSWYHSRNMPKGTAPALVAPDINGLPINLQAMTSKGPVLVYFWATWCGYCRVVSPAVSELAEDHQVITIALQSGTPEEVATYQQQHNLNFRTINDPQGALSASWGLQVTPTVAIIDREGRVSAVTSGMSSKWGLKARLWLAD
>NZ_CP046948.1|WP_166214778.1|124916_125624_+|tRNA-(N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase-TrmO
MTIIPIATTHSCFKEKFGIPRQPLLADASRASIELLPPFDDPEAVSGLEQHSHLWLTWHFHDVAGQWSPKVRPPRLGGNKKLGVFATRSPFRPNNIGLSVVRLIEVRTTPNVELIVAGADLLDGTPILDIKPYIPYADAVTDAHSELAEAAPASIAVNIPEAVLAVARDYRDDWGTDLSELIRQVLAQDPKPAYQQPDPERIYGMALCGFNLQWRYVNGGIEVLGLNTLNPETQP
>NZ_CP046948.1|WP_166214776.1|123109_124567_+|NAD-dependent-succinate-semialdehyde-dehydrogenase
MLNLNNPNLLRKQSYINGEWRDADSGNTLDVINPATGEIVATIASCGADDTRRAIEAADKAWPAWRNRTVKERAKILRDWYNLIVDNVDDLAKILTAEQGKPLSEARTEIIYGANYLEWFAEEAKRAYGDVIAPPSKDKRIVVIKQPVGVTASITPWNFPSAMIARKLAPALAAGCTFVAKPASETPLSALALAVLAEQAGVPKGVFNVVVGKSSREIGKEMTSNPLVRKFTFTGSTAVGKQLQAQCAETMKKTSMELGGNAPFIVFDDADIDEAVKGAIICKYRNAGQTCVCANRILVQAGVYEVFAKKFTAAVQALNVGNGFDEGTDVGPMINPGAVKDVKELVEDALSKGAKALSEGGPSDLGECFFTPTVLADANDTMRLFKEEIFGPVAPLFKFDSEEEAIRMANDTEFGLASYFYARDIGRIWRVAEGLEYGMVGINEGIISNEMAPFGGIKESGSGREGSKYGIDDYLEIKYLCMGGI
>NZ_CP046948.1|WP_166214774.1|121508_122903_+|ribosome-biogenesis-GTPase-Der
MLPVIALVGRPNVGKSTLFNRLTKTRDALVANYAGLTRDRKYGEAEFEGRKMILVDTGGISGGEEGIDAAMAQQSMQAIEEADFVLFMVDCRAGLTPADEMIAERLRVRSKPTILVANKVDGVNPDIALSPFYELGIGELFPTTATHGRGVRALMERLIEGLPAPEEEEEKEEAKGIKIGIVGRPNVGKSTLVNRLLGEDRVVVFDQPGTTRDSVYINYTRDDKPYTIIDTAGIRRRKNVKESVEKFSIVKTLQAVEDSNVVVLVIDASEGLVDQDLHLMGSVIQAGRALVVALNKWDGLDPDHRDFIKTELERRLRFVDFADIHFISALHGTGVGNLYQSIEAAYQSATDKLSTNHLTRILQWAVSEHQPPLVNGNRIKLRYAHAGGKNPPIIVIHGNQTDEVPGHYVRYLEKTFRQALGLHGTPVKIEFRTGKNPYEGKKNKLSDRQKAKKRRLMKFVKKKK
>NZ_CP046948.1|WP_166214772.1|120176_121337_+|outer-membrane-protein-assembly-factor-BamB
MIGTHKALNRIIAVALAAVLGACASNEEKEDTDPVELTEIQESVRLREVWSNNIGDIDALRYAMLKPGIIDGKVIAANSEGDVYAFDRTSGKRVWRTNIEQSISGGVGVGLGMAVVADYRGRVVALDLNDGSQRWSTQLSGEVVSTPAVGAGMVVVQTVDGKLLGLDASTGEQRWRHNTVLPVLTLRGTASPVISAGVVFAGLDNGKLIALSASDGISRWEQRVAIPQGSAELERVVDIDGAPLVRGELVFAASYQGRVVALSREDGRGLWARDASTNHSVTVGAGQVFLSGADGSVHAYNVGNGQIQWSNNELLRRELSGPAYFGDVVVVGDLEGYLHALDPNTGRFVGRTRIDRDPVRIPLLADGDLLFALSDDGELVALRLER
>NZ_CP046948.1|WP_166214770.1|119418_120180_+|tetratricopeptide-repeat-protein
MADHLTEEEQIESLKRWWKENGTGIVTGVVLALAAYFGWQWWQGKQRAEAEAASNVYQGFVEAVSANEGQPDNKQLTTAQSLARELKDNFANRIYASQAALQLAALAVEKNDLEEATKQLQWALDNTSEDALKFVAKRRLAAVKAARGETGEALKLLEGDVPAAFAALFAETRGDILVQQGDNDAARTAYQQARAQLLPEQAAGSRLLDLKIESLGGAEEQTDETQEEPPVSESDSDSQSDNATEAATEKDAQ
>NZ_CP046948.1|WP_166214768.1|118108_119371_+|histidine--tRNA-ligase
MKELRAIRGMNDLQPTQSPVWQYVESTLSELFARYGYSEIRTPILEATQLFARAVGEGTDIVEKEMYTFDDKGGDSVTLRPEGTAGTVRAAIQNGLLNQPQRLWYFGPMFRYERPQKGRLRQFHQFGVEVFGIEGPDIDAEILMMTARLWKQLGVSEHVTLQLNSLGNSESRAAFRDALVEYLSARKDQLDEDSQRRLDKNPLRILDSKNPDTQALLEDAPCLLDYLDDESRTHFDQLRTFLDAAGVAYEVNPRLVRGLDYYGKTVFEWVTDSLGAQGTVCAGGRYDGLVEQMGGKSTPAVGFGLGVERLVLLLETLEVLPDTLDQQIDAYLVAVGDVQSAALAAAETLRTELPWLRLQTHCGGGSFKSQMKKADKSNAEYALIIGEDEAAAGQVTVKSLRADAEQQTVALADLPKILQA
>NZ_CP046948.1|WP_138235857.1|116716_117838_+|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase
MQFESPIVRRVSRQIMVGNVPVGGGAPISVQSMTNTETCDVAATVEQIQRLEKAGADIVRVSVPSMEAAEAFGEIKKQVNVPLVADIHFDYRIALRVADLGVDCLRINPGNIGREHRIRAVVDKARDLNIPIRIGVNAGSLEKDLQKKYGEPTPDALVESALRHVDILDSLDFQNFKVSVKASDIFMATAAYRKLAAQIDQPLHLGITEAGGLRAGTVKSAIGLGALLLDGIGDTLRVSLAADPVEEVKVGWDLLKSLRLRTKGINFIACPSCSRQNFDVVKTMNELETRLEDITTPLDVAVIGCIVNGPGEAKEADIGLAGGTPSHAIYVDGQPDRKFKNDNLVDDLEKLIREKAAAKAAQEASIIARETTE
>NZ_CP046948.1|WP_166214766.1|115456_116509_+|DUF4115-domain-containing-protein
MSSSNQISDPQETTSTDTPAITVGIMLREARDKAGFTRDELARRLCMTPDKLEALEQDAFERFAGTTYVRGYIRNLCKELGLDATVVMEAFARQMPVEVAAEPARAPVGAVLSSRRERRRGSLSAPLILVLALAAGGGFWWFDQQAGDGSQLVRVDGAQDRDDSELLATASRYSAEVDISEEAAEVAFPTVQSVETSEALTDINEERAAAPEVDDGAPETDAELADVVPPDVENSAAEALHPVAERSAEVPSGVAPVAAAETVEAPSEAGTAPRLVISFQGESWLEVTDATGYKMIAKLQPAGSTVELNGRAPFSVMLGNAAAATITFDGQVVDSAPIGNRRTRKLSVGG
>NZ_CP046948.1|WP_138235994.1|114684_115470_+|type-IV-pilus-biogenesis/stability-protein-PilW
MFARISSPAVLAGLLLSLLLGGCVSSGPGKSVDLDKARETHIQLGLRYLQSGSENRELARHHFQKALELGRKDPQAHHGLALLYQADKENAVAESHFKKALRYDSKFSMARVNYGAFLYQQERYRDAKAQFQVASEDLTYNRRSYALANLGRAELRLGESDAAEAAFMKALSLSPNMSLAQLELAELKFAKGDYAQAKQYLDRYSDKNRQVPQSLWLGIRIEKIFGNRDKERSYALALKNLFPYSAETLKYQQMMAENEQQ
>NZ_CP046948.1|WP_166214782.1|126476_127763_+|hypothetical-protein
MGQLPAAQTSNTLQAWGKRDSGRAIFANGSQRQILDNFRQLSTQQSSAGYHAQALIKAVDSLRGAASPVNSMLKPNHPTRRLLVAGGFEIEYELNSYYGDCQTDVEIVAIRMVVGDAKGRNRTALWQIAPNEQGPFTFPTKPSPQLKPTATQSGSASAPIKVGINGHIGEAEKSVAILAEHIGRGDKAKLTALRKSGFQFLYIPPESNAWISGWRTLKSLGNQGSEQQQKAARILAQHMLEAHQQGLHVEWTSQGEGAWVLIEAMELLGPRQIDLQQRQKIFLSDHTRNRFTADRARRKLNMDTQDDKWHNAAPGLKQTIGGEQLGLAPLLSVGSDLLYHTPREERLGKSVSLAWQTGDYLIKKWGMTGMAAGLAASTGGSAALAAAVVKALHKLTPTVVASLPGACNHYFKSTGDQLQQLINKSNKP
>NZ_CP046948.1|WP_166214784.1|127787_128885_+|hypothetical-protein
MWLGNEQNPKGPSWRRARSVRKNVSGTQIRLQAPPVRPNKSTLRAWYLETEPDHFDLASTDTLEPIDYQSVKPAGSERADRRVTIWSSGWSFSGRPLLDGGSLGELRVNLVVEEVGDLPVNCSLFRREDLLRYARGYFSEGWLGSYHEGYGEEQDTFDITEYHWPCFLAPLNAQWLERNDQYWLYFEAQPLRIGPDEFYWLYPIGHRRCLRVSFAVSRWLSNAGNPYRKQRSPLTNYLRLMENIMSTIVVELSESAAREKASIHNSGDHFPLFHCSEAQVNDAKHTLYMWSGAEYRDKSQPKEGGDHRAPKEDVAAFIDERIKPRPLPGCLAIGPAFIENDNFGELGSEAAVEIATPLARAGNQH
>NZ_CP046948.1|WP_166214786.1|128922_129144_-|DNA-gyrase-inhibitor-YacG
MSDHSSSDTPTLACPTCKKPIEWSEKFPHRPFCSERCKLIDLGEWASEGHKIPGQPVYDDVLSDDLDPTKTRH
>NZ_CP046948.1|WP_166220233.1|129158_129782_-|dephospho-CoA-kinase
MSTPRFTVGLTGGIGSGKSAAAARFRHHGVNVVDADWAARVVVEPGRPALVAIAEHFGPSVIQADGSLDRAALRKLVFDNPAERRWLEQLTHPLIREEIVTSLAASAQTHSAPYAILESPLLIESGQSELVQRICVVDLPEAMQLARASARDANTLEQIRKIMAAQLSREARCAMADDILDNSGSLESLNAQVDALHAKYVQLASQS
>NZ_CP046948.1|WP_166214788.1|129968_130262_-|HigA-family-addiction-module-antidote-protein
MTMHNPPHPGEFIQFTYMEPFGISCRFLAVKLDVAASTLNRVLKGQSGVSPEMALRLSKALGRSPESWLAMQDAYDLWQARKHVQLNKVQRLELDAA
>NZ_CP046948.1|WP_166214790.1|130581_131466_-|prepilin-peptidase
MFEYFSSHPALLISSAFVLGLLIGSFLNVVIHRLPIMMEREYQRDFYSYFEKTPSAEEQKQLSETYNLVLPHSHCPKCNTVIKPWENIPIVSYLWLRGKCGHCGTAISKRYPLVELVTGILTAIVVWQLGFTWQALAGVFFTWALVALTGIDFDKQLLPDNITLPLLWAGLLINIWGVFVPLQDAVIGAIVGYLSLWAVFHLFKLVTGKEGMGAGDFKILAAIGAWFGWQSVLLVIPLSAAVGALVGITWTLVSGRDKNLPIAFGPYLAGAAWIAMLWGEQIVGWYFRISGLSG
>NZ_CP046948.1|WP_166214792.1|131479_132694_-|type-II-secretion-system-F-family-protein
MAKAAVAVAYIYKGVDAKGNKVEGEINSTNPALIKAQLRRQGIIANKVQKKATPLFGGNKKIKPGDIAIFTRQMATMMKAGVPLVQSFEIVADGLENAGMKELIFKIRDDVASGTAFADSLRRHSLYFDDLFCNLVASGEQSGALETMLDRIATYKEKTESLKKKIKKAMTYPIAVVVVAVVVTAILLVKVVPQFAETFSSFGADLPAFTLFVLGISEWMQANWFYAFLGVVVGIGGTIEVKKRNKNVANFFDKLMLKLPILGQITYNSIAARFARTLSTTFAAGVPLIDALKSVAGATGNVVYEEATLKIRDSVATGIPLNGAMRVSGLYPSMLVQMAAIGEESGALDEMLAKAADFYEEAVDNLVDNLTTLMEPMIMAVLGILVGGLMIAMYLPIFQLGQVV
>NZ_CP046948.1|WP_166214794.1|132745_134455_-|type-IV-A-pilus-assembly-ATPase-PilB
MSSTPLSGLAKRLVIDNAIDEATAQSAVQAAKRERQSFAQHAVESKLIKSRELATIASTAFGSPLFDLSSYNFDLLPKDIVDEKLISKHFALPLYKRGNRLFVAVADPTNLAGLDEINFNTGLNTDAVLVEADKLSKAIENYLNNSDVGGGLEGLDDESLDGLDVESGETRREDESDPGGDEAPVVRFVNKVLLDAIRTGASDIHFEPYEKLYRVRLRTDGILHEVARPPIQLATRISARLKVMSKMDISERRVPQDGRIKMKLSKTKAIDFRVNSLPTLWGEKIVLRILDPSSAKLGIDALGYEEFQKKIYMDALAQPQGMILVTGPTGSGKTVSLYTGLNILNTPERNISTAEDPVEINLEGINQVNVSNKVGLNFAEALRSFLRQDPDIVMVGEIRDLETAEIAIKAAQTGHLVLSTLHTNSAPETLTRLMNMGVPTFNIATSVSVIIAQRLARRLCGECKKPAELPEEVLKEEGFDTVTIPKSDWKIYQPVGCEHCSKGYKGRVGVYEVVRITDGISRIIMEGGNSIQIADQAKKEGFNNLRISALRKVVMGVTSLEEANRVTKD
>NZ_CP046948.1|WP_166214796.1|134931_135387_+|pilin
METVTMKKQQGFTLIELMIVVAIIGILAAVALPAYQDYTIRARVSEGLSLASGAKATVAENIANNGGTIAAGACQGVNVFTTAVGSVASLGCTDTTGVIRVTMGANAANVALDLTPGSTQGGSGVTWGCAVTSAANNKYVPSECRAAAAGN
>NZ_CP046948.1|WP_166214798.1|135437_137186_+|DUF393-domain-containing-protein
MPFFNVCMQVFYDGECPLCSQYTIKLGLEKAVGLVELINLRERPEMLAWLKSKGVDPDLGMVVFHANRLYHGADAMRLLARLSSAPNVIVYFFNMLLSNSVISAVLYPFLRIGRNLLLLLLGHTSLSRSEVASLSGDRVLFFIFGFFAFLHLLVYEFQFGAKIYWSTYLIAILGLALFWGIKARFSFMLLVAVMAFDSIAQMPSLSNHTILKNFFLSAIVISGVARALRGHTWNQFWSDILPVGRTLLVIMYFFGVFHKINQDFLNPQVSCALALWDMMPGILPSFRGEYLDYVYIYGTFTVEGALLVLLFVPQLRHIGISLGMAFHMLLALSAYAMYAPFSVLSIFLHACFLSPDASRNIVRSIEWKYVEDFLKSPLGIFAMVLTLLLLYLSAWLGRYSDVAIVSFLIVFPVCYLIIRYGRDDRSSGLDYFLPKNRWLTLIGILFFFNCITPYLGLKTAQSMNMFANLRLEKGSNHLLLGRVSPFEYLNDVVLPIKSTGSRKFEYIQTQGVALTYYSLLDELERNRNATVSFWRGGRLFEGARYDSLKQDAEAILHPRWFRAWFHFSPVDLKSPKICALDR

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Crispr_ID: NZ_CP046948_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046948_3

513027-513115

Orphan

Consensus_repeat	Method
GCTCAGGGCTGTTTGTCTCGCTCAGGGCTGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP046948_3

>merge|NZ_CP046948|3|513027-513115|CRISPRCasFinder
GCTCAGGGCTGTTTGTCTCGCTCAGGGCTGTATTTTCCCGCTCAGGGCTGTTTGTCTCGCTCAGGGCTGTTTGTCTCGCTCAGGGCTGT

>NZ_CP046948|3|3|513027-513115|CRISPRCasFinder
GCTCAGGGCTGTTTGTCTCGCTCAGGGCTGT	ATTTTCCCGCTCAGGGCTGTTTGTCTC
GCTCAGGGCTGTTTGTCTCGCTCAGGGCTGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046948.1\|WP_166215193.1\|516328_516823_+\|Spy/CpxP-family-protein-refolding-chaperone	unknown	unknown	gnl\|CDD\|197366
NZ_CP046948.1\|WP_166215200.1\|520760_521105_-\|ArsC-family-reductase	unknown	unknown	gnl\|CDD\|239333
NZ_CP046948.1\|WP_166215198.1\|519674_520706_-\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	unknown	unknown	gnl\|CDD\|211834
NZ_CP046948.1\|WP_166215175.1\|504833_505457_-\|peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|238901
NZ_CP046948.1\|WP_138236521.1\|521137_521806_-\|endonuclease-III	unknown	unknown	gnl\|CDD\|223255
NZ_CP046948.1\|WP_166220298.1\|509726_510758_+\|segregation/condensation-protein-A	unknown	unknown	gnl\|CDD\|224273
NZ_CP046948.1\|WP_166215177.1\|506347_506647_-\|YciI-family-protein	unknown	unknown	gnl\|CDD\|183103
NZ_CP046948.1\|WP_166215197.1\|518103_519246_-\|succinyl-diaminopimelate-desuccinylase	unknown	unknown	gnl\|CDD\|237265
NZ_CP046948.1\|WP_166220296.1\|506718_507414_-\|MFS-transporter	unknown	unknown	unknown
NZ_CP046948.1\|WP_166215173.1\|504081_504837_-\|pyridoxine-5'-phosphate-synthase	unknown	unknown	gnl\|CDD\|237977
NZ_CP046948.1\|WP_166215195.1\|517660_518038_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046948.1\|WP_166215183.1\|510778_511738_+\|SMC-Scp-complex-subunit-ScpB	unknown	unknown	gnl\|CDD\|377219
NZ_CP046948.1\|WP_138236506.1\|505583_506267_-\|TIGR04211-family-SH3-domain-containing-protein	unknown	unknown	gnl\|CDD\|275056
NZ_CP046948.1\|WP_166215185.1\|511734_512763_+\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|182659
NZ_CP046948.1\|WP_166215191.1\|515378_516083_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP046948.1\|WP_166215181.1\|508847_509471_+\|threonylcarbamoyl-AMP-synthase	unknown	unknown	gnl\|CDD\|183245
NZ_CP046948.1\|WP_166215189.1\|513997_515368_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|236532
NZ_CP046948.1\|WP_166215179.1\|507795_508689_+\|PHP-domain-containing-protein	unknown	unknown	gnl\|CDD\|223686
NZ_CP046948.1\|WP_138236516.1\|517101_517653_+\|flavodoxin	unknown	unknown	gnl\|CDD\|236439
NZ_CP046948.1\|WP_166215187.1\|513124_513880_-\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|176860

Protein	Function_ID	Function_description	E-value
NZ_CP046948.1\|WP_166215193.1\|516328_516823_+\|Spy/CpxP-family-protein-refolding-chaperone	gnl\|CDD\|197366	cd09916, CpxP_like, CpxP component of the bacterial Cpx-two-component system and related proteins. This family summarizes bacterial proteins related to CpxP, a periplasmic protein that forms part of a two-component system which acts as a global modulator of cell-envelope stress in gram-negative bacteria. CpxP aids in combating extracytoplasmic protein-mediated toxicity, and may also be involved in the response to alkaline pH. Functioning as a dimer, it inhibits activation of the kinase CpxA, but also plays a vital role in the quality control system of P pili. It has been suggested that CpxP directly interacts with CpxA via its concave polar surface. Another member of this family, Spy, is also a periplasmic protein that may be involved in the response to stress. The homology between CpxP and Spy suggests similar functions. A characteristic 5-residue sequence motif LTXXQ is found repeated twice in many members of this family.	1.51062e-12
NZ_CP046948.1\|WP_166215200.1\|520760_521105_-\|ArsC-family-reductase	gnl\|CDD\|239333	cd03035, ArsC_Yffb, Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.	2.04844e-55
NZ_CP046948.1\|WP_166215198.1\|519674_520706_-\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	gnl\|CDD\|211834	TIGR03536, DapD_gpp, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.	0
NZ_CP046948.1\|WP_166215175.1\|504833_505457_-\|peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|238901	cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.	1.05075e-73
NZ_CP046948.1\|WP_166220298.1\|509726_510758_+\|segregation/condensation-protein-A	gnl\|CDD\|224273	COG1354, scpA, Rec8/ScpA/Scc1-like protein (kleisin family) [Replication, recombination, and repair].	1.07303e-68
NZ_CP046948.1\|WP_166215177.1\|506347_506647_-\|YciI-family-protein	gnl\|CDD\|183103	PRK11370, PRK11370, YciI family protein.	1.42092e-62
NZ_CP046948.1\|WP_166215197.1\|518103_519246_-\|succinyl-diaminopimelate-desuccinylase	gnl\|CDD\|237265	PRK13009, PRK13009, succinyl-diaminopimelate desuccinylase; Reviewed.	0
NZ_CP046948.1\|WP_138236521.1\|521137_521806_-\|endonuclease-III	gnl\|CDD\|223255	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair].	5.48353e-88
NZ_CP046948.1\|WP_166215173.1\|504081_504837_-\|pyridoxine-5'-phosphate-synthase	gnl\|CDD\|237977	cd00003, PNPsynthase, Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed, solvent-shielded active site.	2.18407e-118
NZ_CP046948.1\|WP_166215183.1\|510778_511738_+\|SMC-Scp-complex-subunit-ScpB	gnl\|CDD\|377219	pfam04079, SMC_ScpB, Segregation and condensation complex subunit ScpB. This is a family of prokaryotic proteins that form one of the subunits, ScpB, of the segregation and condensation complex, condensin, that plays a key role in the maintenance of the chromosome. In prokaryotes the complex consists of three proteins, SMC, ScpA (kleisin) and ScpB. ScpB dimerizes and binds to ScpA. As originally predicted, ScpB is structurally a winged-helix at both its N- and C-terminal halves. IN Bacillus subtilis,one Smc dimer is bridged by a single ScpAB to generate asymmetric tripartite rings analogous to eukaryotic SMC complex ring-shaped assemblies.	1.14261e-63
NZ_CP046948.1\|WP_138236506.1\|505583_506267_-\|TIGR04211-family-SH3-domain-containing-protein	gnl\|CDD\|275056	TIGR04211, hypothetical_protein, SH3 domain protein. Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region.	5.57044e-56
NZ_CP046948.1\|WP_166215185.1\|511734_512763_+\|pseudouridine-synthase	gnl\|CDD\|182659	PRK10700, PRK10700, 23S rRNA pseudouridine(2605) synthase RluB.	2.13697e-95
NZ_CP046948.1\|WP_166215191.1\|515378_516083_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	6.09136e-76
NZ_CP046948.1\|WP_166215181.1\|508847_509471_+\|threonylcarbamoyl-AMP-synthase	gnl\|CDD\|183245	PRK11630, PRK11630, threonylcarbamoyl-AMP synthase.	6.45441e-103
NZ_CP046948.1\|WP_166215189.1\|513997_515368_-\|HAMP-domain-containing-protein	gnl\|CDD\|236532	PRK09470, cpxA, envelope stress sensor histidine kinase CpxA.	9.65295e-73
NZ_CP046948.1\|WP_166215179.1\|507795_508689_+\|PHP-domain-containing-protein	gnl\|CDD\|223686	COG0613, COG0613, Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only].	2.33676e-63
NZ_CP046948.1\|WP_138236516.1\|517101_517653_+\|flavodoxin	gnl\|CDD\|236439	PRK09267, PRK09267, flavodoxin FldA; Validated.	4.83094e-87
NZ_CP046948.1\|WP_166215187.1\|513124_513880_-\|SRPBCC-family-protein	gnl\|CDD\|176860	cd07818, SRPBCC_1, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.	1.97425e-52

>NZ_CP046948.1|WP_166215185.1|511734_512763_+|pseudouridine-synthase
MSEDAAPAGEKLQKVLARAGLGSRREMERAIEAGRVTVNGEVAGLGERVTDDDRVEFDGKRVADGDENRLRVILYNKPIGEICSRHDPEGRPTVYDRLPRLGSGRWISVGRLDFNTSGLLLFTNSGELANKLMHPSSVIDREYLVRIQGQVDDEMKKRLVKGVQLEDGEARFTDIVESGGEGSNRWFYCVVMEGRNREVRRLWESQGVRVSRLKRVRYGSVFIPSHVRVGQWIEMEPKEIDDLCITAGLPKLGQRPLTQAEKENLQRQRRKLRKAPTSAPVRAPLKPTAGSSVVGKTATPAKGAAVKKSPGRSGPNKGGASGKSGGVRNTNGRSRPGPGSRK
>NZ_CP046948.1|WP_166215183.1|510778_511738_+|SMC-Scp-complex-subunit-ScpB
MSITPELLSRILEGALLAAAQPMSEDRLLALFEEGEQPERGQLREALEQIAQRCEGRGFELRQVASGWRFQVPEDLAPWVNKLWEEKPQRYSRATLETLAIIAYRQPITRGDIEEIRGVAVSSQIVRSLADRGWIKVVGQRDVPGKPSLYATTREFLDYFNLKSLDDLPTLAEIRDIDSLNAVLDLGVDATGADDDEPEADAAGEAPQAGADTRSSESEDEQLEEGLQEAGSDQQTLETAPEETELADETGAAVELASESYAEEALTPETEAGNDDAEPQSNADEADHETGADEPVTPDHPTAEALDEDDNKSPENLNS
>NZ_CP046948.1|WP_166220298.1|509726_510758_+|segregation/condensation-protein-A
MPFAMVAGKAFTDLPSDLYIPPDALEVILEAFEGPLDLLLYLIRRQNLDILEINVADITRQYMSYVEMMTAMRFELAAEYLVMAAMLAEIKSRMLLPRPPEAEEEEGEDPRAALIRRLQEYERFKTAAEDMDELPRMGRDIHQASAAGPDRKLTRPEPEVDLKEVLLALSEVLRRADMFESHQVEREKLSTRERMTQVLDKIRHRQFVPFVALFRAEEGRLGVVVTFLAVMELVKESLVELVQNEAFGAIHVRSRGEVQRSPDEGDFDRDFDDDDAGDLLAADDEFSGDDHGASPALSDPHDDAPEVAQVGNLDHDGETVDQEKAGQETEQETGAATTPSLFS
>NZ_CP046948.1|WP_166215181.1|508847_509471_+|threonylcarbamoyl-AMP-synthase
MAQFFQIHPDNPQARLISQAAEIVSSGGVIVFPTDSAYAIGCRLGEKVAVERIRALRQLDKDHNFTLMCRDLSELASYAKVDNQMFRLLKNHTPGPYTFIMPATSEVPRRLAHAKRKTIGLRVPDNAIVQALISALGEPLMSCSLIMPGDDQPLTDPYDIRDTLEHQVELVIDGGFCGLEATTVVDLTGDEPVLVRQGCGAIDEILG
>NZ_CP046948.1|WP_166215179.1|507795_508689_+|PHP-domain-containing-protein
MPLSQRLLTAEAVAGQVDLHCHSSASDGILSPEALVSRAKLAGVTLLALTDHDTVAGFAAAQAAADQENIVLLPGIELTARWGRQVVHIVGLNIDPASAAMGVAIDTRDQLRDQRAREIAARLEKRGFVGALEGARRLAGAGVIGRPHFARWLVEAGHLPDEGKAFKRYLGSGKAGDVAVAWPDMADTIGSIHAAGGAAVLAHPLKYGLTRMRLQSLLGEFHGAGGDAVEVVCGQQNPVQTREILALLERVGAVREKGKPLLASLGSDFHQPDQPWRELGSVRLPEGVEPVWALWRT
>NZ_CP046948.1|WP_166220296.1|506718_507414_-|MFS-transporter
MAETKPQKESLLANLLLNIVIPTVILSKLSGDSWLGTKWAIVVALAFPLLYGLRDLQRSGKVNFFSALGIISILLTGGMSLLEFEARYIAIKEAAIPGLLGIATIASLYTRWPLVRTLIYNDRILDTGKVARRLTARGTESAFDRTLQQASWMIAGSFFLSSALNYILAEVLLKSPPGTEAFNEELGKMTALSFPVIALPATVILMLVLVFLFRRIGKLTGLTLEEILVQQ
>NZ_CP046948.1|WP_166215177.1|506347_506647_-|YciI-family-protein
MWYVIISQDVDHSLPLRQSARPQHIARLNDLKEQGRLLIAGPHPAIDSEDPGEAGFTGSLVVADFPSLEDARAWADADPYVAAGVYAAVTVKPYKLVLP
>NZ_CP046948.1|WP_138236506.1|505583_506267_-|TIGR04211-family-SH3-domain-containing-protein
MNRLRNIFAATLIALGASHTQAISSDRYITDELHVPMRSGQGNEFRILHRGLPSGTKLTLLEDAPDTGWAKVRTPGGEEGWVRRQYLEDEPVAKIKLAQAEARLSHVESMQGDLGGEVRRLEASNSKLSSELHAALERADALERELKELKSLSSDAVALNQRHQKLLNQHELLKQQQTMDKAEIQRLASSETRKWYMYGALSVFLGAFLAMIAPHFRPRKRHSEWAN
>NZ_CP046948.1|WP_166215175.1|504833_505457_-|peptidyl-prolyl-cis-trans-isomerase
MTRLSLLKSLAATLLACLSCFASALSENPRVVLETDLGDVELVLYADKAPKTVENFLAYIDSGFYNGTIFHRVIPGFMAQGGGYTFDFQEKPTRDAIANESANGLSNARGTIAMARTNDPDSATSQFFINLVDNSRLDGSANKAGYTVFGKVLLGMAVVQQIAAEPRGQYASFPDAPNTPVRILKARRADSASDANPTTDSIGGNSQ
>NZ_CP046948.1|WP_166215173.1|504081_504837_-|pyridoxine-5'-phosphate-synthase
MIALSVNLNKIALIRNSREGNYPDVVAHGRTCLDAGAHGITVHPRPDQRHIRPQDVRDLSALCASRQVEFNVEGNPFAGAVGSYPGLLPLVLETHPQQCTLVPDSDDQLTSDHGFDLNKDGARLEPIIRELRDAGIRVSLFMDPDKAQISLAREVGADRIELYTGPYAEAVSNQSPALEKIFAAHCAAAEHALHMGLGVNAGHDLNLINLPRYRTLPGLQEVSIGHALTVDAISMGMANAVAAYVNCLAGK
>NZ_CP046948.1|WP_166215187.1|513124_513880_-|SRPBCC-family-protein
MPQFAGKQTDNHGVNLWGTSTMRWILYILVFLALLVLAGFLFPRVATTERSVYITEPPEVVFPYLNNFRNFNQWSPWYQIDPDTEYSYEGFPEGTGAVMKWQSDNPSVGTGSQTITASEPYSHVAMDLDFGTQGKAKSEFQLQSQGSGTNVTWSFSAEMGGSPIARWMGLMVSKMVGKSYEEGLQKLKTVVESAGSPGSPSGADDAVPAGPGTVEPEAIDPGMENEIIDEDEIEEPDTDGDALEEFEREQP
>NZ_CP046948.1|WP_166215189.1|513997_515368_-|HAMP-domain-containing-protein
MSLFGRVFIGAWLTAVIMVLVAVYITHFREFGDPRQKDRWEGPELFREVTHNLRMARRHDPDHFRHWLEDQPAKTQRRIFAVDRRGEEILNRPVPPSMAPLLESLSFRNRESHALVDKKPSVGFFVPQRDGESLRVVFIAGKSKEELLLRFILRNFWPILVLATLASGLACYLLARYLSKPLDNLRTATRRVAAGDLSYRVSPILRGHSRELGELAADFDSMTAQLQESMAEQRRLIKDVSHELRSPLARLQVALGIARQKNVQALDPELDKIGKAADYLEDIIGDILSLPVSGGDERALDDVVEINSLLTALTDDLKEEAAAKQAHFAVRTDDRELLVATRGSSLTAALENILRNAIKYSPVGGHIDVVIRHQGERCQIQVTDSGDGVPEAELEAIFRPFYRTDEARSRESGGFGLGLAIAQRTVAQHNGSIQAFNAPIAGLAVCVTLPLLETSF
>NZ_CP046948.1|WP_166215191.1|515378_516083_-|response-regulator-transcription-factor
MSHILLVDDDTELTELLEEFLRGEGFEVTVANDGGRGLELARSRSFDALVLDVMLPIHNGFDVLRKLREDAASPGHSLPVVMLTAKGDTVDRIVGLEMGADDYLPKPCNPRELAARLRAILRRGRSETSSSDDKLSSGALHLLPREHLCLWLEQPVNLTGAEFSVLKVLVEHTGEVVSKEVLTEQALGRKLMPYDRSIDVHVSNIRKKLAERGAGRELIINIRGAGYMLTSPQG
>NZ_CP046948.1|WP_166215193.1|516328_516823_+|Spy/CpxP-family-protein-refolding-chaperone
MNKWKALAGSLIIGGALTTSGLVMAFPDGDHGPRGHHKGGFHREHMFDRLADELDLTEGQIAQLEANREAGKENRKADRKAMREVHKQLREAIESGADQAALDTLAVKLGQLEVKKFQRIHEQRAQFESILTPEQKTRLGELKAKREARHEKRMQRWKDSQNDE
>NZ_CP046948.1|WP_138236516.1|517101_517653_+|flavodoxin
MSKIGLFYGSDEGNTESVAHRIVARLGEERVDLHDIADVTQLEIESYEQLIFGIPTWDFGQIQSDWEDFWEDVKEIDFSGKTVALFGLGDQFGYGDYFLDAMGMLHDVIVANGAAIVGHWPTAGYEFEASKAQVPGQDIFVGLAIDEDQQEELTCARLNDWCEQIAEEFGLEGGADSIALLED
>NZ_CP046948.1|WP_166215195.1|517660_518038_+|hypothetical-protein
MTHPDTLSLQDFWPWLADHCNCILRAGTPDSILYDDDDFFWRFTHENPNTLLVQVVKGKRLVGEVFIEPDLVSSVRITPGEKEEVIFDLMADADGEEQVLYYFVMAHGYDVHEPPAAVTRHGRLH
>NZ_CP046948.1|WP_166215197.1|518103_519246_-|succinyl-diaminopimelate-desuccinylase
MTPTVQLTCDLIRRQSVTPEDAGCMELMLERLENIGFKTEHLRFGDTDNIWSVRGEEGPIFAFAGHTDVVPTGPEANWQNPPFEPKIIDGMLYGRGAADMKGSLAAMVVACEEFVAAHPDHKGRIAFLITSDEEGPAKHGTVKVVEWLEARNEKITWCLVGEPSSTTLAGDVIKNGRRGSLGLELTVFGIQGHVAYPHLAENPVHKLAPALAELAAEEWDQGNDFFPATSFQVSNINGGTGATNVIPGDVKVICNWRFSTETTAEDLERRARAIFDKHGLKYEANFNLSGHPFLTAEGPLVESAQAAIRKVTGRETELSTAGGTSDGRFIAPTGAQVVELGPVNATIHKVDECIKADDLDLIKDMYREILVGLLVDSPVE
>NZ_CP046948.1|WP_166215198.1|519674_520706_-|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase
MSKVFSIGFGVGTCNEKGEWLEVYFPQPMLYPSEGVAKAVTSVLDISGGNVAVALDEAQLEPLANQLESAGSTAQAAILRQFANRQRPLVAVVLHSDDAPQSVPESYLKLHLLSHRLVKPHEIRLDGIFGQLPNVAWTNKGAIDLTELPARQLEARLNGEVLEVSCVDKFPKMTNYVVPKGVRIAHTARVRLGAYLGEGTTIMHEGFVNFNAGTEGPGMIEGRISAGVFVGAGSDLGGGSSTMGTLSGGGNIVISLGEGCLLGANAGTGIPLGDRCTVESGLYITAGTKVAVLDDKGAVVESVKARDLAGKSDLLFRRNSSTGAVECLTNKSAVELNAELHSN
>NZ_CP046948.1|WP_166215200.1|520760_521105_-|ArsC-family-reductase
MITLYGIKNCDTVKKARQWLEQNNVDYTFHDFREDGMNGVPLADWLGEFGWEQVLNRRSTSWRELSDAQKNALDNASAQVLANDMPTLIKRPVMTRGNDTLFGFKADSYAAFTK
>NZ_CP046948.1|WP_138236521.1|521137_521806_-|endonuclease-III
MTAKNLLKQERVDYIQNRLEELYPETPVPLDHFDAYSLLVAVLLSAQCTDERVNQITPALWKLADNPHDMAQVPVEKIREVIRPCGLSPQKSKAIQKLSEILVNQYHGKVPENMAALETLPGVGHKTASVVMAQAFGHPAFPVDTHIHRLAQRWGLTSGKNVVQTEKDLKRLFPKDKWNKLHLQIIFYGREYCSARGCDGTVCEICTTCYPARKNPKKVKKA

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Crispr_ID: NZ_CP046948_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046948_4

2114012-2114096

Orphan

Consensus_repeat	Method
CGTCACCCCCGCGCAGGCGGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP046948_4

>merge|NZ_CP046948|4|2114012-2114096|CRISPRCasFinder
CGTCACCCCCGCGCAGGCGGGGGGTCCGATGCCTGCACCTCGGTCGGCGTCGCGTCGTTGTACGTCACCCCCGCGCAGGCGGGGG

>NZ_CP046948|4|4|2114012-2114096|CRISPRCasFinder
CGTCACCCCCGCGCAGGCGGGGG	GTCCGATGCCTGCACCTCGGTCGGCGTCGCGTCGTTGTA
CGTCACCCCCGCGCAGGCGGGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046948.1\|WP_166217276.1\|2121245_2122985_+\|flagellar-basal-body-M-ring-protein-FliF	unknown	unknown	gnl\|CDD\|235668
NZ_CP046948.1\|WP_166217267.1\|2116011_2116965_-\|flagellar-hook-length-control-protein-FliK	unknown	unknown	gnl\|CDD\|376734
NZ_CP046948.1\|WP_138233869.1\|2117344_2117761_-\|flagellar-export-chaperone-FliS	unknown	unknown	gnl\|CDD\|376819
NZ_CP046948.1\|WP_166217255.1\|2111556_2112660_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046948.1\|WP_166220505.1\|2109452_2111570_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|374909
NZ_CP046948.1\|WP_166217261.1\|2114293_2114860_-\|flagellar-transcriptional-regulator-FlhC	unknown	unknown	gnl\|CDD\|237181
NZ_CP046948.1\|WP_166217240.1\|2102126_2103341_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|130083
NZ_CP046948.1\|WP_138233875.1\|2113430_2113709_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046948.1\|WP_166217258.1\|2112666_2113365_-\|fimbria/pilus-periplasmic-chaperone	unknown	unknown	gnl\|CDD\|237939
NZ_CP046948.1\|WP_166217264.1\|2115706_2116015_-\|flagellar-protein-FhlB	unknown	unknown	gnl\|CDD\|225166
NZ_CP046948.1\|WP_166217252.1\|2106678_2108154_-\|glutamate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234953
NZ_CP046948.1\|WP_166217270.1\|2116961_2117348_-\|flagellar-protein-FliT	unknown	unknown	gnl\|CDD\|377507
NZ_CP046948.1\|WP_138233866.1\|2120651_2120981_-\|flagellar-hook-basal-body-complex-protein-FliE	unknown	unknown	gnl\|CDD\|178948
NZ_CP046948.1\|WP_138233873.1\|2114871_2115174_-\|flagellar-transcriptional-regulator-FlhD	unknown	unknown	gnl\|CDD\|368356
NZ_CP046948.1\|WP_138233867.1\|2119398_2120511_+\|FliC/FljB-family-flagellin	unknown	unknown	gnl\|CDD\|235867
NZ_CP046948.1\|WP_166217273.1\|2117783_2119136_-\|flagellar-filament-capping-protein-FliD	unknown	unknown	gnl\|CDD\|236141
NZ_CP046948.1\|WP_166217249.1\|2105407_2106319_-\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	unknown	unknown	gnl\|CDD\|224131
NZ_CP046948.1\|WP_166217246.1\|2104063_2104855_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224596
NZ_CP046948.1\|WP_138233878.1\|2108464_2109022_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046948.1\|WP_166217243.1\|2103362_2104067_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213187

Protein	Function_ID	Function_description	E-value
NZ_CP046948.1\|WP_166217276.1\|2121245_2122985_+\|flagellar-basal-body-M-ring-protein-FliF	gnl\|CDD\|235668	PRK06007, fliF, flagellar basal body M-ring protein FliF.	0
NZ_CP046948.1\|WP_138233866.1\|2120651_2120981_-\|flagellar-hook-basal-body-complex-protein-FliE	gnl\|CDD\|178948	PRK00253, fliE, flagellar hook-basal body protein FliE; Reviewed.	9.65875e-30
NZ_CP046948.1\|WP_138233869.1\|2117344_2117761_-\|flagellar-export-chaperone-FliS	gnl\|CDD\|376819	pfam02561, FliS, Flagellar protein FliS. FliS is coded for by the FliD operon and is transcribed in conjunction with FliD and FliT, however this protein has no known function.	1.13798e-38
NZ_CP046948.1\|WP_166220505.1\|2109452_2111570_+\|hypothetical-protein	gnl\|CDD\|374909	pfam16967, TcfC, E-set like domain. TcfC is a family of bacterial fimbrial proteins. These sit in the outer bacterial membrane surrounding the RcpA proteins of the fimbrial shaft. This family is from Gamma-proteobacteria. This domain represents an immunoglobulin like E-set domain.	6.73424e-15
NZ_CP046948.1\|WP_166217258.1\|2112666_2113365_-\|fimbria/pilus-periplasmic-chaperone	gnl\|CDD\|237939	PRK15308, PRK15308, fimbrial protein TcfA.	2.94525e-14
NZ_CP046948.1\|WP_166217261.1\|2114293_2114860_-\|flagellar-transcriptional-regulator-FlhC	gnl\|CDD\|237181	PRK12722, PRK12722, flagellar transcriptional regulator FlhC.	8.86471e-118
NZ_CP046948.1\|WP_166217240.1\|2102126_2103341_-\|hypothetical-protein	gnl\|CDD\|130083	TIGR01010, BexC_CtrB_KpsE, polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	3.21499e-81
NZ_CP046948.1\|WP_166217267.1\|2116011_2116965_-\|flagellar-hook-length-control-protein-FliK	gnl\|CDD\|376734	pfam02120, Flg_hook, Flagellar hook-length control protein FliK. This is the C terminal domain of FliK. FliK controls the length of the flagellar hook by directly measuring the hook length as a molecular ruler. This family also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems.	0.000292768
NZ_CP046948.1\|WP_166217264.1\|2115706_2116015_-\|flagellar-protein-FhlB	gnl\|CDD\|225166	COG2257, COG2257, Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown].	9.44579e-18
NZ_CP046948.1\|WP_166217252.1\|2106678_2108154_-\|glutamate--tRNA-ligase	gnl\|CDD\|234953	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.	0
NZ_CP046948.1\|WP_166217270.1\|2116961_2117348_-\|flagellar-protein-FliT	gnl\|CDD\|377507	pfam05400, FliT, Flagellar protein FliT. This family contains several bacterial flagellar FliT proteins. The flagellar proteins FlgN and FliT have been proposed to act as substrate specific export chaperones, facilitating incorporation of the enterobacterial hook-associated axial proteins (HAPs) FlgK/FlgL and FliD into the growing flagellum. In Salmonella typhimurium flgN and fliT mutants, the export of target HAPs is reduced, concomitant with loss of unincorporated flagellin into the surrounding medium.	4.13627e-10
NZ_CP046948.1\|WP_138233873.1\|2114871_2115174_-\|flagellar-transcriptional-regulator-FlhD	gnl\|CDD\|368356	pfam05247, FlhD, Flagellar transcriptional activator (FlhD). This family consists of several bacterial flagellar transcriptional activator (FlhD) proteins. FlhD combines with FlhC to form a regulatory complex in E. coli, this complex has been shown to be a global regulator involved in many cellular processes as well as a flagellar transcriptional activator.	3.86505e-32
NZ_CP046948.1\|WP_138233867.1\|2119398_2120511_+\|FliC/FljB-family-flagellin	gnl\|CDD\|235867	PRK06819, PRK06819, FliC/FljB family flagellin.	6.75721e-142
NZ_CP046948.1\|WP_166217249.1\|2105407_2106319_-\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	gnl\|CDD\|224131	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane].	3.37399e-154
NZ_CP046948.1\|WP_166217273.1\|2117783_2119136_-\|flagellar-filament-capping-protein-FliD	gnl\|CDD\|236141	PRK08032, fliD, flagellar capping protein; Reviewed.	2.34321e-109
NZ_CP046948.1\|WP_166217246.1\|2104063_2104855_-\|ABC-transporter-permease	gnl\|CDD\|224596	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	8.43684e-42
NZ_CP046948.1\|WP_166217243.1\|2103362_2104067_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213187	cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system. The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.	2.11229e-89

>NZ_CP046948.1|WP_138233875.1|2113430_2113709_-|hypothetical-protein
MSPYNWSESSLSASASMRISLQVPTQVSLRQTEDPAFDVLCMKRMPAAYYHIYVRDMEAPVSADSIFISKHQSACFPVSASKAGKLVFIVAE
>NZ_CP046948.1|WP_166217258.1|2112666_2113365_-|fimbria/pilus-periplasmic-chaperone
MKKLLIVLLLLVQPAEAAMTLDKIIVYLTDAPNSRDDILISNPDEAPLYLATEIYRVDNPGLENEARVRVTDPKEFRILVNPAKAVLAPGTRKRFRIMSLDTELDRERVYRVTFKPVVGEIKSDKPAVKILVAYQALVFVQPENGNYAFRLERRDNALQLTNTGNVNAQASNMEVCASEMSCTPLEFSERVYPGETVSISLPENAAGIRDGFLRFTAVNNKQSSTVNLPLAP
>NZ_CP046948.1|WP_166217255.1|2111556_2112660_+|hypothetical-protein
MLRTDRHYAGGKNHSLVLIALLLLLSRCTDQTYAQQSYSSSNRFPCTNGAEVTEPENSPNGDKAIGVCGLNQFIEPADGASEIVEDFSIRSCWAWWGGNQWEVEPCEEPRNFTVALAGDTDPSGKNFVINGPSGPVPVDIWFRYKPSGAEFQFLPNAQSQAFPGAANGQQIPVEIRITPQSGQFAAGEYSGNFYFSLYQCEGSWQEPDCQSADSGGKANLEPALPFGVIVSQPTQIRISGLEDMHLLSVGEDIQASQTFCVFTTDAADFRLKADSLHGNASFQLKGISGDQTVEYDLRAWALIGPRRRTNLHEGSYTTTTWRGHAQQECNSGSEENMLLELTIPASRLQNLQAHSYQDTLTLTVEAE
>NZ_CP046948.1|WP_166220505.1|2109452_2111570_+|hypothetical-protein
MIYDESRFRVDVFFSPALLPQQAAIKDPYLPDARAGFSLLQNLSGAWSGVEGNNSAHTAALYGQTIVSFGESGLHGHWTLNNAGSTQLYRLHWTRDYRGRAYSIGLLQPYSGFGAFVSAPYLYGVEYRSSDNSRVDREYRLGSPVEVNMPIRGRLEILRDGSLIYSALLEAGNQLIDTTTFPDGAYEIEVRTYDEGGRVINEYREFFTKDTQLPALGEWQWSLQAGTPAEINPSSTLPDRHDEYFVQAGTARRLSNNFGMFTNLAATGEESAVELGGRWILPWLEVSPSLLHAEGRNGHRLYGSLKTPYFTLGVSETRLGDSPNPARRDFSLLNNGYSNRSANISTPLLGGQLSLRYTERSRALSVNDSDFVLDSELAGANRLQTLEFRRGIFSNRFWQGNIFLSHSDADGIAFTRATVEFRRRGENWYHSARSRVEKSHSGTTPFLGLSSTWNDRDRWSMVVDQQFSAELSEDQQYLRSVSRAAGLRGQASATFDWNNDARNDLRSLNYLGTFSTNLMSDGDAFAWGGESALDSAILVDIKGSEDQDFEVLVDGIRRGYARGDEISAINLPAFNTYDVTLRPLGDGFYDFEEHSEEITLYPGNVTRSDYEVESVVLVLGRILKQGHPAAGVSISIGDRRAVTDEFGIFQMQLRLPPNARTSPPLQWGDCQIAIGQQVHSEHWINLGDIELNRGYCLSEVAHASH
>NZ_CP046948.1|WP_138233878.1|2108464_2109022_+|hypothetical-protein
MKKGISALIALLASTGALAATQGNVGDSTSTGTVGITLDVNTSIVAKNFNDMSLSLENTAPGSDIVGSESFCVGGLGFNEYTIAFSSLNGSTGSGTATDAPFELESGADQIAYQVGFADSVGATTPAASADSNGDVSSQYAKNGDLGCGTDNAKLFVTIPSSEWEAATQAADYSDTLTVTVTVDN
>NZ_CP046948.1|WP_166217252.1|2106678_2108154_-|glutamate--tRNA-ligase
MTVRTRIAPSPTGDPHVGTAYIALFNQCFAQAQGGQFILRIEDTDQVRSTPESEQAILDSLRWLGLDWAEGPDVGGPHGPYRQSERGDIYKKHCNDLVAKGHAFHCYRTADELEQLRAQLQEAGRVTLKPSDLALPAEEVERRKAAGEPYVVRMNVPESGTCVIEDLLRGTIEIDWAQVDAQVLLKSDGMPTYHLANVVDDHLMEITHVLRGEEWINSAPKHKLLYEYFGWDMPVLCHLPLLRNPDKTKLSKRKNPTSILYYQRAGYMPEALLNYLGRMGWSMPDEREKFTLDEMRAHFDIKRVSLGGPVFDVEKLSWLNGLWIRELEDTQLADRLQNWLLNRDNLMKVLPHAKGRMETFGDFAPLVSFLAAGKLDLSETSFANGSKLELEEQKRLLQFALWRLEALRSWSKDNIFAAMKELSAQMEIKLKDFNAPLFVAISGTTASFSVMDAMDLLGPDLSRARLRQAIEVLGGAGKKVLKRWEKEYASL
>NZ_CP046948.1|WP_166217249.1|2105407_2106319_-|UTP--glucose-1-phosphate-uridylyltransferase-GalU
MTTVKKAVIPVAGLGTRMLPATKAIPKEMLPIVDKPLIQYVVNEAVKAGIKEIVLVTHASKNAITNHFDTSFELEAQLENRLKRQLLDEVRAIIPKDVTIISVRQAEAKGLGHAIACARPVVGDNPFAVLLPDVLVDEYAADLTSTNLAAMVRNFEATRAGQIMVEPVEWAEVSKYGVVDCLGAELSVGGVAKIDGMVEKPAVDVAPSNMAVVGRYVLPAEIWGLLEKTAPGAGGEIQLTDAIDELLKQQAVEAYRIVGRSHDCGNKVGYMMAQLEYGLQHAEIGRELKKFLSTRASKETVSA
>NZ_CP046948.1|WP_166217246.1|2104063_2104855_-|ABC-transporter-permease
MYPGIQRSPWQIQRDVIRALLIREMKTRFGKWRLGYAWVLLEPAMHIMVLAAIFSFMGREFYPGIPTMLFMLGGIAPFIFFSNCFNKGVAAVESNRGLFNYRQLRPFDAVLSRVLLEFAIYLFSLVVLLGILAWFGITARFNDFLLLVVINLLFFGFCLGISLTMCVVGTKYPEVSRFAPMIVRPLYFISGVFFSLEQVPQEYHGYLSWNPLLHMIELTREGLFASYHGMFANLPYLATSSLVMLAFGLLVYRSQWRDLVRSQ
>NZ_CP046948.1|WP_166217243.1|2103362_2104067_-|ABC-transporter-ATP-binding-protein
MIELRNLTKSFRTPAGRKVLFRDVNAFFPEGKNIGILGRNGAGKTTLLRIMGGIDYPDSGRVITDQRISWPMGLSGGFQGSMTGRENAAFVCGLHGIWGSAKRKVLDRVQDFAEIGDYFDAPVKSYSSGMRSRLAFGLSIAVDFDYYLVDEVMSVGDAHFKHKCEQVIEEKRKSANFIIVAHSMPLLKKNCDVGLFLGPSGLQIFDTVDEAIRLYQQGLPKPAQNSPAQPLAGA
>NZ_CP046948.1|WP_166217240.1|2102126_2103341_-|hypothetical-protein
MEAVEKTTTEVEQAGQKKAARTARAILRKLTAAGDGRKPAWIKRLSGATVFVLLPLLAVSAYYLFWVSDRYVSTTQLIVKDNSSNQGMSSSLGFLVPGMGSDNQDAFLVVNYIQSLDMALYLDETLKLAEYYKSDQYDVFSRLAADASQEDYLEYYRSHIAIGHDETKGIITIEMQAFEPEFARQLVDTVVRKSEDFVNAISNQLADKQVSFVRSEMELAQAKLRTSKQNILDFQNRNNVVSPEELTKGISAIIQGLEATLAEQRAKLTAAKTYLHSDSSQVVSLQAEINSIEQQIEAEKVRLVGVSKEGGEERLNSLNAHFQNLQLDLQFAMDAYQASLTALETARMEASGRLKHLMVISQPSVAEEAEYPHKLYNLASLAVILLLLYGIGRMLVASIRDHRV
>NZ_CP046948.1|WP_166217261.1|2114293_2114860_-|flagellar-transcriptional-regulator-FlhC
MSEKSLLDEMQQVQLAIELIELNARLQVLESETDLSRGRLIRLYKEVRGISPPKGMLPFSTDWFITWMPNIHASLFYGIYLHLTRNQGCERMAGFIKAYRLYLELAASEDEAEPVLGLTRAWTLVRFFESGLFDLSTCTSCKGRFVNHAHTPSHDYVCGICQPPSRAGKTRKRANGPAAIPDEKTEVA
>NZ_CP046948.1|WP_138233873.1|2114871_2115174_-|flagellar-transcriptional-regulator-FlhD
MFDNAINEIQDINLSYLLLAQRLLKEDYATALFRFKLDESVASVLASLTARQLTRLARSNQLVFKMNFEDAAQLEQLTSTKRAEGLEHIHAALLMSSSVN
>NZ_CP046948.1|WP_166217264.1|2115706_2116015_-|flagellar-protein-FhlB
MTKRSGNQGPNQPRRRAVAIGQNGHDDVAKILAAGYGEVAERIIESAREHEIFVHDAPALVSLLMQLNLDQKIPPKLYAVIAEILIWSRNFETEKLKKEPIE
>NZ_CP046948.1|WP_166217267.1|2116011_2116965_-|flagellar-hook-length-control-protein-FliK
MSGITFLLDTLLHQVLGKRVDTATPERQPAPVKPLTPADAVQQLRSDSRLDPRRDATLFGGNENISGKNASETISNSGLQDISRPKIQHAGVQLSTVARTLSELLRDTQETAPVIRPVRPLADSDQPRAMELAATLKSSVENSGLFYESHLLRWYRGERERLLLESEPQMQTGAGGAPGSGMPAKEESLQVLLRQQLELLATPQLRWEGEVWPGHYLELCIRMREDDGQNAGLAHYSSGSETGDASETFWEVDLKLVLPVVGEISLHLTMSDDSLKIVAQPETPVVENLVANKMPDLHRQLDALGFVRLQLDIGSVQ
>NZ_CP046948.1|WP_166217270.1|2116961_2117348_-|flagellar-protein-FliT
MKNHHIVDDSPLTTPSRLLAAYANLLARSTRMLTWVKEHDWFNLVEEQTCYAIEVESIAAAEVNITLSDDERRRKLLLLEQIVEQDLEIRRRLRERQGELRQLIGTHQSKRNLSRSYGAVIPLETDFR
>NZ_CP046948.1|WP_138233869.1|2117344_2117761_-|flagellar-export-chaperone-FliS
MYSKRSPGRAQGAASYAKVGLESDVLSASPHRLILLLFQGADTAIGAALVYMQDGNAAEKGRAISRALDIVNNGLAAALDLEQGGQLAVQMASLYDYIARQLLNANLKNDSTPLLEARKLLEDLASAWREVDPGRQHS
>NZ_CP046948.1|WP_166217273.1|2117783_2119136_-|flagellar-filament-capping-protein-FliD
MASISSLGIGSGLDLSGLLDQLESAERQKLTPIARQQQSYQTKISAFGLLESALDKVKDAAAALSDAEDFADVETSLSGEALTISAGEGAIVGNYEIDVTQRARSYSIATMGVADKEAQLGGGSIEFTLGNGETLSVAIDEADSSLEDVRNAINSADAGVVASIVNDGSGTPYRLVLSSADSGTEAAIANIDFTGDLGASLALDAATEVEAKNAQLTVNGIAIQSQNNRVEGAIEGITLDLEKTGTATLEVTRDTDGIEKKLTSFVDAYNDLQERLSDLTKFNTESGVGGVLQGNATVRSIESQMRNLLGGSLESDTFSSLADLGITLEIDGTLTLDEEKVDDLVSNRLGELSRFFAGTSDDSDGFADRIESVLGAMTEEDGLLETATSGLEASIASTEDRYARVEAQIASTIERYRTQFSQLDSLIAQMNSTSTYLTQQFEALAAQTQK
>NZ_CP046948.1|WP_138233867.1|2119398_2120511_+|FliC/FljB-family-flagellin
MSVINTNITAMIGQQNLSKSQSALQTSMERLSSGLRINSAADDAAGQAIANRMSSQITGLSQAQRNANDGISVAQTAEGALNQVNDNLQRIRELTVQAQNDTNSQSDRDSIQAEINQRLSEIDRISSETNFNGVKVLSEDRGFTIQVGANDGEQITIDLKEINSQTLGLSGFNVGSLSSSLTEITTDDGAGNTTTNQIDLSGIANGPAGNVTLHGYGAYDSATGKYAEYAIKDEDGNMYKIAAGDVAANGAVTHDFTDAAGLQAAKDAYDADAEAGLTATANPLATLDSALSSVDSLRSDLGAIQNRFESAISNLSTTETNLSAARSRIEDADYATEVSNMTRAQILQQAGTSVLAQANQLPQNVLSLLG
>NZ_CP046948.1|WP_138233866.1|2120651_2120981_-|flagellar-hook-basal-body-complex-protein-FliE
MTTPVTSLPMQKLLGQMQEMSDAAAGKKTPVDLQVSGSFGAALRESLQRINSLQNASTATAQAFQSGDPGVELHEVMIAGQKASIAFEMGVQVRNRLLNAYKDIMNMQV
>NZ_CP046948.1|WP_166217276.1|2121245_2122985_+|flagellar-basal-body-M-ring-protein-FliF
MSSAAQSAASPVQSLGQLSSRLLANPLIPLLVAGAAAIAIVAAVLLWSQAPQYRVLFSNLSEQDGGRIISELESRAIPYEFSQGGRTLLVPEDQVYRLRLQLAEQGLPSGGNAGFEIMDRQAFGISQFAERVNFQRSLQGELASSIESLGPVTRARVHLSMAKPSVFIREREPAKASVVLTLAPGRVLGEGQAAAIVHLVSSSVPDLSAENVTLVDQTGRLLSRPGTDENSLDGTQLDYVHSIESSYQQRIERILEPMLGRHNVRAQVTAQVDFDQREETSERFAPNQDGAPATVRSRQFNSDYNGDAANPGGIPGALTNTPPGSAPSPIEATAQNNEEEASRQRSHLRQEQLVNYEIDRDITHIQRQRGRVQRLSAAVVVNYREVTDEQGAVSLQPLGEEELQHIEQLVRQAMGYSEERGDGLEVVNSRFSSQEQSAPPAIAWHEDPFWRQLMLSLGRYLLVGLALLLAFRWLVRPMVERHNQLRTQTPATTTATPNLPHAPGTAPNAVPATADAEGYLYDTGEYSADMDEPPQEQPRPRKRRRSSVYEQNLMDLQGMAKDDPAMVAMIVRSWMNQDD

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP046948_3	3.1\|513058\|27\|NZ_CP046948\|CRISPRCasFinder	513058-513084	27	NZ_CP045356	Vibrio sp. THAF64 plasmid pTHAF64_a, complete sequence	804799-804825	6	0.778
NZ_CP046948_3	3.1\|513058\|27\|NZ_CP046948\|CRISPRCasFinder	513058-513084	27	NZ_CP046163	Vibrio sp. THAF191c plasmid pTHAF191c_b, complete sequence	771723-771749	6	0.778
NZ_CP046948_3	3.1\|513058\|27\|NZ_CP046948\|CRISPRCasFinder	513058-513084	27	NZ_CP046066	Vibrio sp. THAF191d plasmid pTHAF191d_b, complete sequence	955109-955135	6	0.778

1. spacer 3.1|513058|27|NZ_CP046948|CRISPRCasFinder matches to NZ_CP045356 (Vibrio sp. THAF64 plasmid pTHAF64_a, complete sequence) position: , mismatch: 6, identity: 0.778

attttcccgctcagggctgtttgtctc	CRISPR spacer
ttttgcccgctcaggactgtttgttcg	Protospacer
 *** **********.********..

2. spacer 3.1|513058|27|NZ_CP046948|CRISPRCasFinder matches to NZ_CP046163 (Vibrio sp. THAF191c plasmid pTHAF191c_b, complete sequence) position: , mismatch: 6, identity: 0.778

attttcccgctcagggctgtttgtctc	CRISPR spacer
ttttgcccgctcaggactgtttgttcg	Protospacer
 *** **********.********..

3. spacer 3.1|513058|27|NZ_CP046948|CRISPRCasFinder matches to NZ_CP046066 (Vibrio sp. THAF191d plasmid pTHAF191d_b, complete sequence) position: , mismatch: 6, identity: 0.778

attttcccgctcagggctgtttgtctc	CRISPR spacer
ttttgcccgctcaggactgtttgttcg	Protospacer
 *** **********.********..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1672574 : 1717848

Tetraselmis_virus(28.57%)

integrase,protease,tRNA,transposase

attL 1714283:1714303|attR 1719855:1719875

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_166216584.1\|1672574_1673564_-\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_138234923.1\|1673560_1674055_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_166216587.1\|1674051_1674795_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_138234925.1\|1674791_1675103_-	cell division protein FtsB	NA	NA	NA	NA
WP_166216590.1\|1675328_1676615_-	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	1.7e-135	60.4
WP_166216593.1\|1676733_1677579_-	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	5.0e-51	44.2
WP_138234928.1\|1677667_1679299_-	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	1.2e-149	50.5
WP_166216596.1\|1679424_1680732_-\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_166220445.1\|1681063_1682584_+	xylanase	NA	NA	NA	NA
WP_138234930.1\|1682898_1684353_+	sugar porter family MFS transporter	NA	NA	NA	NA
WP_166220447.1\|1684793_1687361_+	glycoside hydrolase family 3 protein	NA	NA	NA	NA
WP_166216600.1\|1687364_1688285_+	DUF4380 domain-containing protein	NA	NA	NA	NA
WP_166216603.1\|1688464_1689355_+	DegV family EDD domain-containing protein	NA	NA	NA	NA
WP_166216607.1\|1689521_1690325_+	transporter	NA	NA	NA	NA
WP_166216610.1\|1690385_1691684_+	hypothetical protein	NA	NA	NA	NA
WP_166216613.1\|1691738_1693727_+	MBL fold metallo-hydrolase	A0A2P0VMX1	Tetraselmis_virus	9.0e-160	45.8
WP_166220449.1\|1693796_1695164_-	phospholipase D family protein	NA	NA	NA	NA
WP_166216616.1\|1695305_1697684_-	hypothetical protein	NA	NA	NA	NA
WP_166220451.1\|1697857_1699543_-	arylsulfatase	A0A2P0VMN7	Tetraselmis_virus	1.6e-53	32.7
WP_166216619.1\|1700061_1701054_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA
WP_166216622.1\|1701057_1702197_-	sterol desaturase family protein	NA	NA	NA	NA
WP_166216625.1\|1702322_1703924_+	hypothetical protein	NA	NA	NA	NA
WP_166216628.1\|1704096_1704447_-	glyoxalase	NA	NA	NA	NA
WP_166216631.1\|1704557_1705196_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_138234942.1\|1705386_1705710_-	TfoX/Sxy family protein	NA	NA	NA	NA
WP_138234945.1\|1707766_1708135_-	hypothetical protein	NA	NA	NA	NA
WP_166216633.1\|1708292_1708586_-	hypothetical protein	NA	NA	NA	NA
WP_166216636.1\|1709053_1709593_-\|protease	trypsin-like serine protease	NA	NA	NA	NA
WP_166216639.1\|1709654_1710623_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	3.5e-40	34.1
WP_166216643.1\|1710637_1710985_-\|protease	trypsin-like serine protease	NA	NA	NA	NA
WP_166220453.1\|1711275_1711971_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_166216647.1\|1712045_1712288_+	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA
WP_166216651.1\|1712284_1712587_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_166216654.1\|1712724_1713057_-	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA
WP_166216657.1\|1713148_1713493_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_166216660.1\|1713620_1714082_-	hypothetical protein	NA	NA	NA	NA
1714283:1714303	attL	NA	NA	NA	NA
WP_138237304.1\|1715171_1715672_-	hypothetical protein	NA	NA	NA	NA
WP_166214670.1\|1715900_1716800_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4JCB7	uncultured_Caudovirales_phage	1.1e-08	25.1
WP_166214667.1\|1716801_1717848_+\|transposase	transposase	NA	NA	NA	NA
1719855:1719875	attR	NA	NA	NA	NA

DBSCAN-SWA_2

2924408 : 3011735

Acinetobacter_phage(16.67%)

plate,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_166218388.1\|2924408_2925815_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_166218391.1\|2925953_2928251_-	mechanosensitive ion channel	NA	NA	NA	NA
WP_166218394.1\|2928373_2929186_-	hypothetical protein	NA	NA	NA	NA
WP_166218396.1\|2929583_2930897_-	aspartate aminotransferase family protein	NA	NA	NA	NA
WP_166218398.1\|2931164_2932610_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_166218400.1\|2932783_2933722_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_166220600.1\|2933809_2934055_+	DUF2164 domain-containing protein	NA	NA	NA	NA
WP_166218402.1\|2934094_2934682_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA
WP_166218404.1\|2934776_2935751_+	hypothetical protein	NA	NA	NA	NA
WP_138235114.1\|2935770_2936334_+	sugar O-acetyltransferase	NA	NA	NA	NA
WP_166218406.1\|2936397_2937006_+	DJ-1/PfpI family protein	NA	NA	NA	NA
WP_166220602.1\|2937008_2937392_+	VOC family protein	NA	NA	NA	NA
WP_166220603.1\|2937487_2939080_-	hypothetical protein	NA	NA	NA	NA
WP_166218408.1\|2939447_2941007_+	acyl esterase	NA	NA	NA	NA
WP_166220605.1\|2941320_2944089_+	M1 family peptidase	A0A0P0IY26	Acinetobacter_phage	4.8e-135	32.5
WP_138235117.1\|2944158_2944749_-	HdeD family acid-resistance protein	NA	NA	NA	NA
WP_166218410.1\|2944815_2945628_-	response regulator	NA	NA	NA	NA
WP_166218412.1\|2945695_2946784_-	histidine kinase	NA	NA	NA	NA
WP_166218414.1\|2946932_2947397_+	EVE domain-containing protein	NA	NA	NA	NA
WP_138235121.1\|2947429_2947633_-	DUF3094 family protein	NA	NA	NA	NA
WP_166218416.1\|2947809_2949585_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_138235123.1\|2949751_2950453_-	dethiobiotin synthase	NA	NA	NA	NA
WP_138235124.1\|2950828_2951320_+	L,D-transpeptidase family protein	NA	NA	NA	NA
WP_138235125.1\|2951512_2952955_-	replicative DNA helicase	O80281	Escherichia_phage	5.8e-124	52.2
WP_138235126.1\|2953119_2953566_-	50S ribosomal protein L9	NA	NA	NA	NA
WP_166218418.1\|2953600_2954449_-	hypothetical protein	NA	NA	NA	NA
WP_138235128.1\|2954500_2954731_-	30S ribosomal protein S18	NA	NA	NA	NA
WP_166218420.1\|2954743_2955196_-	30S ribosomal protein S6	NA	NA	NA	NA
WP_166218422.1\|2955494_2956346_+	hypothetical protein	NA	NA	NA	NA
WP_166218424.1\|2956453_2957164_+	2OG-Fe(II) oxygenase	R9TLF0	Synechococcus_phage	2.9e-20	49.5
WP_166218426.1\|2957394_2958714_-	hypothetical protein	NA	NA	NA	NA
WP_166218428.1\|2958800_2959451_-	hypothetical protein	NA	NA	NA	NA
WP_166218430.1\|2959481_2960153_-	hypothetical protein	NA	NA	NA	NA
WP_166218432.1\|2960177_2960741_-	RNA polymerase sigma factor	NA	NA	NA	NA
WP_166218434.1\|2961052_2961808_-	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA
WP_138235138.1\|2965261_2967919_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA
WP_166218436.1\|2968386_2979234_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	NA	NA	NA
WP_166218438.1\|2979301_2981299_-	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
WP_166218440.1\|2981382_2983959_-	protein kinase	Q5XXQ3	Spodoptera_litura_multicapsid_nucleopolyhedrovirus	7.1e-08	28.4
WP_105102826.1\|2984609_2985098_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_166218442.1\|2985244_2987122_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	3.5e-20	23.5
WP_166218444.1\|2987134_2987743_+	hypothetical protein	NA	NA	NA	NA
WP_138235156.1\|2987745_2988039_+	type VI secretion protein	NA	NA	NA	NA
WP_166218446.1\|2988085_2990746_-	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	3.1e-83	30.6
WP_166218448.1\|2990802_2992026_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_166218450.1\|2991989_2993819_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_138235160.1\|2993818_2994295_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_166220607.1\|2994294_2995767_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_138235161.1\|2995888_2997376_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_166218452.1\|2997375_2997894_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_166218454.1\|2997941_2999222_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_166218456.1\|2999281_3000094_-	hypothetical protein	NA	NA	NA	NA
WP_138235165.1\|3000440_3001106_-	type VI secretion system-associated protein TagF	NA	NA	NA	NA
WP_166218458.1\|3001113_3004653_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_166218460.1\|3004705_3005560_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_138235168.1\|3005562_3006900_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_138235169.1\|3006982_3007564_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_166218462.1\|3007684_3009412_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_138235171.1\|3009417_3010944_-	hypothetical protein	NA	NA	NA	NA
WP_166218464.1\|3010940_3011735_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_3

3032307 : 3100906

Vibrio_phage(22.22%)

integrase,protease,tRNA,transposase

attL 3038506:3038521|attR 3100517:3100532

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_166218482.1\|3032307_3033183_-\|protease	protease modulator HflC	NA	NA	NA	NA
WP_138235182.1\|3033195_3034347_-\|protease	FtsH protease activity modulator HflK	NA	NA	NA	NA
WP_138235183.1\|3034442_3035780_-	GTPase HflX	NA	NA	NA	NA
WP_138235184.1\|3035962_3036241_-	RNA chaperone Hfq	NA	NA	NA	NA
WP_166218484.1\|3036420_3037383_-\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_166218486.1\|3037440_3039342_-	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	1.5e-87	32.2
3038506:3038521	attL	NA	NA	NA	NA
WP_166218488.1\|3039745_3041068_-	AMIN domain-containing protein	A0A067ZJB6	Vibrio_phage	2.5e-17	27.6
WP_166218490.1\|3041118_3041616_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
WP_166218492.1\|3041620_3043135_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA
WP_166218494.1\|3043137_3043332_+	hypothetical protein	NA	NA	NA	NA
WP_166218496.1\|3043328_3044447_+\|tRNA	tRNA epoxyqueuosine(34) reductase QueG	NA	NA	NA	NA
WP_166220610.1\|3044859_3045405_-	oligoribonuclease	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	2.5e-27	40.1
WP_166218498.1\|3045568_3046600_+	small ribosomal subunit biogenesis GTPase RsgA	NA	NA	NA	NA
WP_166218500.1\|3046627_3047434_+	sulfurtransferase	NA	NA	NA	NA
WP_138235194.1\|3047606_3048458_+	phosphatidylserine decarboxylase	NA	NA	NA	NA
WP_166218502.1\|3048544_3049927_-	DUF3391 domain-containing protein	NA	NA	NA	NA
WP_138235196.1\|3050142_3051222_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA
WP_166218504.1\|3051532_3052894_+	sodium:proton antiporter	NA	NA	NA	NA
WP_138235198.1\|3052972_3054391_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_166218506.1\|3054406_3058858_-	glutamate synthase large subunit	NA	NA	NA	NA
WP_166218508.1\|3059269_3060355_-	3-dehydroquinate synthase	NA	NA	NA	NA
WP_166218510.1\|3060460_3060985_-	shikimate kinase AroK	NA	NA	NA	NA
WP_166218512.1\|3060981_3063207_-	type IV pilus secretin PilQ	R9TEZ5	Vibrio_phage	2.9e-13	25.9
WP_138235203.1\|3063209_3063737_-	pilus assembly protein PilP	NA	NA	NA	NA
WP_138235204.1\|3063733_3064354_-	type 4a pilus biogenesis protein PilO	NA	NA	NA	NA
WP_138235205.1\|3064356_3064935_-	PilN domain-containing protein	NA	NA	NA	NA
WP_166218514.1\|3064938_3066015_-	pilus assembly protein PilM	NA	NA	NA	NA
WP_166218516.1\|3066170_3068867_+	penicillin-binding protein 1A	NA	NA	NA	NA
WP_138235208.1\|3068964_3069450_-	hypothetical protein	NA	NA	NA	NA
WP_166218518.1\|3069511_3075955_-	response regulator	W8CYM9	Bacillus_phage	1.1e-12	37.9
WP_138235210.1\|3076092_3078252_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	2.2e-10	51.9
WP_138235211.1\|3078508_3079051_-	purine-binding chemotaxis protein CheW	NA	NA	NA	NA
WP_138235212.1\|3079069_3079432_-	response regulator	NA	NA	NA	NA
WP_105102769.1\|3079663_3080059_-	response regulator	A0A220YL79	Alteromonas_virus	2.2e-09	31.9
WP_138235213.1\|3080458_3081415_+	glutathione synthase	NA	NA	NA	NA
WP_166218520.1\|3081491_3082421_+	energy transducer TonB	NA	NA	NA	NA
WP_138235215.1\|3082481_3083075_+	YqgE/AlgH family protein	NA	NA	NA	NA
WP_138235216.1\|3083129_3083558_+	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_166218522.1\|3083615_3084557_+	hydroxymethylbilane synthase	NA	NA	NA	NA
WP_166218524.1\|3084567_3085368_+	uroporphyrinogen-III synthase	NA	NA	NA	NA
WP_166218526.1\|3085569_3087006_+	hypothetical protein	NA	NA	NA	NA
WP_166218528.1\|3087002_3088256_+	metal-dependent phosphohydrolase	NA	NA	NA	NA
WP_166220612.1\|3088294_3089347_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_138237388.1\|3089442_3090217_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_166218530.1\|3090841_3091102_-	hypothetical protein	NA	NA	NA	NA
WP_166218532.1\|3091222_3091477_-	hypothetical protein	NA	NA	NA	NA
WP_166218535.1\|3092517_3092808_-	hypothetical protein	NA	NA	NA	NA
WP_166220614.1\|3093133_3093906_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_166215615.1\|3095685_3096978_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	4.7e-16	26.3
WP_166218537.1\|3097625_3098003_-	hypothetical protein	NA	NA	NA	NA
WP_166218539.1\|3098958_3099858_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4JCB7	uncultured_Caudovirales_phage	1.1e-08	25.1
WP_166215286.1\|3099859_3100906_+\|transposase	transposase	NA	NA	NA	NA
3100517:3100532	attR	NA	NA	NA	NA

DBSCAN-SWA_4

4230825 : 4237645

Staphylococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_166219784.1\|4230825_4231608_+	heme ABC transporter ATP-binding protein	A0A2R8FFL6	Cedratvirus	2.6e-09	25.9
WP_138235561.1\|4232000_4233263_+	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	3.9e-100	52.7
WP_138235560.1\|4233408_4233885_+	transcriptional regulator NrdR	NA	NA	NA	NA
WP_166220745.1\|4233899_4235009_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	3.4e-39	32.8
WP_166219785.1\|4235163_4235826_+	riboflavin synthase	A0A2I2L4R9	Orpheovirus	2.0e-18	37.2
WP_138235558.1\|4235949_4237065_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	6.6e-51	35.2
WP_138235557.1\|4237174_4237645_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	3.0e-29	43.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP046948

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection