CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP049956	Stenotrophomonas maltophilia strain NCTC10498 chromosome, complete genome	12 crisprs	csa3,DEDDh,WYL,PD-DExK,cas3,Cas9_archaeal,DinG	0	2	8	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP049956_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049956_1

1809167-1809273

Orphan

Consensus_repeat	Method
ATCCACGCATGGCGTGGATCTACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP049956_1

>merge|NZ_CP049956|1|1809167-1809273|CRISPRCasFinder
ATCCACGCATGGCGTGGATCTACCGCAACCCGCTTTGGTGGGGGCCGACCGTTGGTCGGCACGGATGCCTGTGCCTCTCGATCATCCACGCATGGCGTGGATCTACC

>NZ_CP049956|1|1|1809167-1809273|CRISPRCasFinder
ATCCACGCATGGCGTGGATCTACC	GCAACCCGCTTTGGTGGGGGCCGACCGTTGGTCGGCACGGATGCCTGTGCCTCTCGATC
ATCCACGCATGGCGTGGATCTACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049956.1\|WP_032966708.1\|1809912_1810128_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049956.1\|WP_005409591.1\|1813849_1814320_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049956.1\|WP_005409576.1\|1797295_1797691_-\|flagellar-basal-body-rod-protein-FlgB	unknown	unknown	gnl\|CDD\|183628
NZ_CP049956.1\|WP_005413275.1\|1799055_1799712_+\|flagellar-basal-body-P-ring-formation-protein-FlgA	unknown	unknown	gnl\|CDD\|183625
NZ_CP049956.1\|WP_005409587.1\|1810226_1811417_-\|chemotaxis-protein	unknown	unknown	gnl\|CDD\|206779
NZ_CP049956.1\|WP_005409580.1\|1800089_1800428_+\|flagellar-protein-FlgN	unknown	unknown	unknown
NZ_CP049956.1\|WP_005409579.1\|1799787_1800093_+\|flagellar-biosynthesis-anti-sigma-factor-FlgM	unknown	unknown	gnl\|CDD\|274802
NZ_CP049956.1\|WP_005409592.1\|1814432_1814759_+\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NZ_CP049956.1\|WP_164170759.1\|1812247_1813390_-\|tRNA-2-thiouridine(34)-synthase-MnmA	unknown	unknown	gnl\|CDD\|234664
NZ_CP049956.1\|WP_005409582.1\|1802355_1804128_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NZ_CP049956.1\|WP_005409575.1\|1796884_1797292_-\|flagellar-basal-body-rod-protein-FlgC	unknown	unknown	gnl\|CDD\|183634
NZ_CP049956.1\|WP_165710444.1\|1814893_1815706_-\|APH(6)-family-putative-aminoglycoside-O-phosphotransferase	unknown	unknown	gnl\|CDD\|226100
NZ_CP049956.1\|WP_005409581.1\|1800519_1801737_+\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|340419
NZ_CP049956.1\|WP_088428725.1\|1804132_1806235_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|226951
NZ_CP049956.1\|WP_165710443.1\|1811636_1812251_-\|high-frequency-lysogenization-protein-HflD	unknown	unknown	gnl\|CDD\|234690
NZ_CP049956.1\|WP_032966709.1\|1818208_1818592_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049956.1\|WP_005409594.1\|1815844_1818130_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
NZ_CP049956.1\|WP_005413281.1\|1813386_1813848_-\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239647
NZ_CP049956.1\|WP_100438510.1\|1806366_1809126_+\|phosphodiesterase	unknown	unknown	gnl\|CDD\|236645
NZ_CP049956.1\|WP_005409577.1\|1797828_1798773_-\|chemotaxis-protein-CheV	unknown	unknown	gnl\|CDD\|381151

Protein	Function_ID	Function_description	E-value
NZ_CP049956.1\|WP_005409576.1\|1797295_1797691_-\|flagellar-basal-body-rod-protein-FlgB	gnl\|CDD\|183628	PRK12620, flgB, flagellar basal body rod protein FlgB; Provisional.	8.61259e-79
NZ_CP049956.1\|WP_005413275.1\|1799055_1799712_+\|flagellar-basal-body-P-ring-formation-protein-FlgA	gnl\|CDD\|183625	PRK12617, flgA, flagellar basal body P-ring formation protein FlgA.	2.43507e-107
NZ_CP049956.1\|WP_165710443.1\|1811636_1812251_-\|high-frequency-lysogenization-protein-HflD	gnl\|CDD\|234690	PRK00218, PRK00218, lysogenization regulator HflD.	1.08347e-85
NZ_CP049956.1\|WP_088428725.1\|1804132_1806235_-\|PAS-domain-S-box-protein	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	5.59366e-43
NZ_CP049956.1\|WP_005409587.1\|1810226_1811417_-\|chemotaxis-protein	gnl\|CDD\|206779	cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP), signaling domain. Methyl-accepting chemotaxis proteins (MCPs or chemotaxis receptors) are an integral part of the transmembrane protein complex that controls bacterial chemotaxis, together with the histidine kinase CheA, the receptor-coupling protein CheW, receptor-modification enzymes, and localized phosphatases. MCPs contain a four helix trans membrane region, an N-terminal periplasmic ligand binding domain, and a C-terminal HAMP domain followed by a cytoplasmic signaling domain. This C-terminal signaling domain dimerizes into a four-helix bundle and interacts with CheA through the adaptor protein CheW.	7.72638e-31
NZ_CP049956.1\|WP_005409592.1\|1814432_1814759_+\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	4.26539e-44
NZ_CP049956.1\|WP_164170759.1\|1812247_1813390_-\|tRNA-2-thiouridine(34)-synthase-MnmA	gnl\|CDD\|234664	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed.	0
NZ_CP049956.1\|WP_005409582.1\|1802355_1804128_-\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	5.55568e-97
NZ_CP049956.1\|WP_005409575.1\|1796884_1797292_-\|flagellar-basal-body-rod-protein-FlgC	gnl\|CDD\|183634	PRK12629, flgC, flagellar basal body rod protein FlgC; Provisional.	1.2905e-80
NZ_CP049956.1\|WP_005409594.1\|1815844_1818130_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
NZ_CP049956.1\|WP_005409581.1\|1800519_1801737_+\|two-component-sensor-histidine-kinase	gnl\|CDD\|340419	cd16943, HATPase_AtoS-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli K-12 AtoS. This family includes the histidine kinase-like ATPase (HATPase) domains of various histidine kinases (HKs) of two-component signal transduction systems (TCSs) such as Escherichia coli AtoS, an HK of the AtoS-AtoC TCS. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA); some have accessory domains such as HAMP or PAS sensor domains or CBS-pair domains.	1.6216e-52
NZ_CP049956.1\|WP_005409579.1\|1799787_1800093_+\|flagellar-biosynthesis-anti-sigma-factor-FlgM	gnl\|CDD\|274802	TIGR03824, FlgM_jcvi, flagellar biosynthesis anti-sigma factor FlgM. FlgM interacts with and inhibits the alternative sigma factor sigma(28) FliA. The C-terminus of FlgM contains the sigma(28)-binding domain.	1.67856e-14
NZ_CP049956.1\|WP_165710444.1\|1814893_1815706_-\|APH(6)-family-putative-aminoglycoside-O-phosphotransferase	gnl\|CDD\|226100	COG3570, StrB, Streptomycin 6-kinase [Defense mechanisms].	3.65743e-74
NZ_CP049956.1\|WP_005413281.1\|1813386_1813848_-\|NUDIX-hydrolase	gnl\|CDD\|239647	cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	2.42301e-69
NZ_CP049956.1\|WP_100438510.1\|1806366_1809126_+\|phosphodiesterase	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	1.00014e-104
NZ_CP049956.1\|WP_005409577.1\|1797828_1798773_-\|chemotaxis-protein-CheV	gnl\|CDD\|381151	cd19924, REC_CheV-like, phosphoacceptor receiver (REC) domain of chemotaxis protein CheV and similar proteins. This subfamily includes the REC domains of Bacillus subtilis chemotaxis protein CheV, Myxococcus xanthus gliding motility regulatory protein FrzE, and similar proteins. CheV is a hybrid protein with an N-terminal CheW-like domain and a C-terminal CheY-like REC domain. The CheV pathway is one of three systems employed by B. subtilis for sensory adaptation that contribute to chemotaxis. It is involved in the transmission of sensory signals from chemoreceptors to flagellar motors. Together with CheW, it is involved in the coupling of methyl-accepting chemoreceptors to the central two-component histidine kinase CheA. FrzE is a hybrid sensor histidine kinase/response regulator that is part of the Frz pathway that controls cell reversal frequency to support directional motility during swarming and fruiting body formation. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.16931e-37

>NZ_CP049956.1|WP_100438510.1|1806366_1809126_+|phosphodiesterase
MDQGIIASLLQHPLASALVIVDRTGRPLAANPAAREHGLPATVAAYAPMLEDLRLMAADGGIVACTLPGGPHGHYDGHLRAVHDGAGNLLAFTLSIPEPVPLGGGGRWELALDSAGHSLWDWDIPSDRVVRTPAVGDETATEMLARVHGEDIAQVRAALEEHLRGLSEQYSAQFRFRQADGQWRWVLDRGRVVARTADGQPLRMVGTHTDIEQQKQLEGLLQEQQLHLSEAQRIASMGSWSFDPNSGHFWWSPELRSMLALEQGAVPGQRRWLKQLHPRSRGALRAAWRRLWRDGRAANLELELTRGNEPSQHLRLWMQPLLDMDGQPKRLLGQVQNITEQHQTDALIRWRTELLNRVSALGRIGGCEIEVKTRHMQWTEECYRIHGLRKEPITLDQALALYTEDSRNAFEAALARIANGGLPEQLDLCFYRQSGLRVWVQVLIELDRRDGLPPRFVVLFRDITREREANERIELLAHYDLLTGLPNRVLLGEQTAEAIEEARDRGTSLAMLFIDLDGFKTINDSFGHATGDALLKAAATRLHQNLRNNDLFGRFSGDEFIVVLRDLAEPEDAGHVARKLIASLAEPLRRGETTLKVGASVGIAMLGDAQTDFGSLLRAADAAMYAAKEAGRNTYQYYSQDALARIQRKLELEHALHGAIEREEFSLAYQPLLHAHHGEPPAIEALLRWHRPGIGYCSPAEFIPIAEKCGEIVRIGDWVLNEACRQATAWDRAGLRFDRIAVNVSAVQLRDRGFAERVIEICHAHGWPPQRLELELTESALIRDTDILRHCFDVLERHGVPLAVDDFGTGFSNLNYLNRFPVGRLKIDRSFVQGMLHDSGTAEVTQAIVHLGHALGMKVVAEGVETHQEEDMLRRQGCDEIQGYLYSRPLSPRDLAQWLRQPQPVSLRTDASGEVMLVR
>NZ_CP049956.1|WP_088428725.1|1804132_1806235_-|PAS-domain-S-box-protein
MPAEPTGTALVPDPRMAQALSRDRRRVVLSYLVMALAWMIASDSAVQALVPDPQQAAMWQSVKGSFFALASAGLLYLLLRPLAEHVLHTHARQQASELRLRQMFEGNPGPILVYDLDTLAILDANPAACIAFGWERDELLEQTIDALWPPGQDQALQTKLEAIREAPEELCILRTQLQLRDGSLRQMELRSNAISYDGHNARLLIAIDRTAEDLAQLRRDQALARVEEAHELARIGAWELDPSTGMGRYSNQVYRLLGRRPPEARRWHRFDELLVPADPATATQTEQLLADLCSGDPVQVDVLLPLLSMDGRALMVHLRAASGVDESGRSRVLGTLQDVTEREQSRRLLREREEQFRELVRVLPDGVVILSDEHVLYTNAWAASLFGYGSHTLLGEPLSALVAAGDLARVRGQLRAGQPHLGPGHSSVVAMQRADGRSFHAGLAVGEVRYGGRDCKLLIVRDLSDSERTRSALETSNRELQAMAGRLFSLQEDERRAISRDLHDDIGQAITAIKLSAHAAQDEHDPQRRAEDLAQIVSLADTTVAKLRDISTLLRPPQLDALGLEAALSWQARVLFRSSQVELLAEIEPLPHRPDNSIEQACFRIAQESLTNVLRHARASQVHLQLRDIGKRSLHLQIRDDGEGFDPDGPRGLGLIVMRERAQSVGGHVRIESAHGEGTLIDVHLPYQAASMAAVESPEY
>NZ_CP049956.1|WP_005409582.1|1802355_1804128_-|EAL-domain-containing-protein
MWNPNQPPVSIDDAPDRLGAGNPELQAMVAEAASGGTALMLMHVDIDHFASVNENMSAEVGDQALVLVAQRLQSYLRGRGKLWRHGSDEFLIAVPRNADVPLPEDFAEEIRQQMELPLSVLPYTLFMTGKLGVSLCPEHASNASRLLDHAEDALYQAAREGGNAVRIHAVDTPPSAHSESIIARQIVDAIPNGELKLRYQPLVSARDGHVVGMEALLRWQSPTLGMLVPERFMRTAERLGIIVQIGTWVLEGALKQARLWRDQGFDDFTIAVNVSTLQLLRPNFFAEVMGLIQAAGVPAQMLTLEINESALTNNVNFVHETLANLRNEGISLSLDNFGTGDSSLSALVRYPVDKLKIDRSFIKSAPAGNREAAIARAIIAMGHQLGMTVIANGVESQAQLGFLRRNDCDVFQGYLFGEPMSADAAGMTLRRRYLRPEAFAETRPDRTLLLLDDEENVLRSLVRLFRRDGYRILAAGNVRDAFDLLAINDVQVILSDQRMSDMSGTEFLGRVKMLYPDTIRLVLSGYTDLNTVTDAINRGAIYRFLTKPWNDDELRKHIHQAFRTYEEQRRSNAGPAPAESGDGGEDRPLR
>NZ_CP049956.1|WP_005409581.1|1800519_1801737_+|two-component-sensor-histidine-kinase
MSAANALVTAPLPPQPVLQALLERLREGLLLFTEDGQVALANPAAQNLLAGGEDGALPPQRLRELLPPDALEQARQHGHWNGSLPLGEGVVIAHLYHHGPVGQGHFLALFRHIEGQEDYERELQQRHAELRQAYLRLNGTQEKLLQSEKMASIGQLAAGVAHEINNPIGYVHSNLGSLQEYLRSLFTVIEAYERALRAPDPKALIPEIDDIRDRLDIDFISRDLPQLMAESREGIERVTRIVRDLKDFSYSGRDESWKLVDLHAGLESTINIIWNELKYKVTLVREFGQLPLVECLPSELNQVYMNLLLNAGHAIAERGTITVRTGVDGDQVWVEFEDTGGGISPELRQRIFDPFFTTKPVGSGTGLGLSISYSIINKHHGRIDLDSTPGVGSRFRVVLPVKQPR
>NZ_CP049956.1|WP_005409580.1|1800089_1800428_+|flagellar-protein-FlgN
MTAAMSEPLQRLAQALDVERQALVEHDVHALIRATGAKLEALRALEGAPPVGQGEQLQELAERNRANGVLLSRRRREVNWALRQLGRTEDASAYDAKGQSHTVTARRPLAVA
>NZ_CP049956.1|WP_005409579.1|1799787_1800093_+|flagellar-biosynthesis-anti-sigma-factor-FlgM
MSQKIDGNLQVPQALRSVTTPANKPGVSTDAAARPVEAADSLRLTGEATNLQAIERELTTAPAIDAQRVAAVRESLQNGTYKINPDAIASRMLDLDQQLHG
>NZ_CP049956.1|WP_005413275.1|1799055_1799712_+|flagellar-basal-body-P-ring-formation-protein-FlgA
MRRVTSLLAIALAVASPWATAADWQPVASIRAAALTTLPAGSEGEAQVADALRLPKCGGALQVQPTANTTVEVSCPDAGGWRLFVPVKVRRNQTVLVLNRGIGTGETLTAADITTAQRDAARIAGAVLADPNAAIGRIARRPLQAGALLSNNDLVVQRLIKRGDNVALVSRRGSVEVRIAGRAMGDAGENERVSVENLSSRRIVQGTVDAAGDVIVAR
>NZ_CP049956.1|WP_005409577.1|1797828_1798773_-|chemotaxis-protein-CheV
MSHDLLNRIDQRTRLAGHNRLALLLFRLGGRQLFGVNVFKVQEVLRRPELFQVPGLPSQFSGVADVRGRSVPVLDLGLAIGHPEREPEADTSPGYLVVTEFNRSIQGFLVSGVERIVNIAVEDIHPPPELGAESSYLTAVTRFQGELIQVIDVESVLADIAQVRGEAVLDPAMAMPSDGPQLQVLVVDDSRVARQQIRSVLDQLGVGATLLSDGKQALDHLLQIHASGENPAERYAMVISDIEMPAMDGYTLTTEIRRHPGLAGLYVLLHTSLSGVFNNAMVERVGANAFVAKYSPHELADFVLDRLRKVALAA
>NZ_CP049956.1|WP_005409576.1|1797295_1797691_-|flagellar-basal-body-rod-protein-FlgB
MRNLITDYLGVHAQAMPLREQRMKLIASNLGNADTPGYKAQDLDFDAALRHAQGQDANGLMATTHEQHYEISSGLNPFQIAREGVQPSLDGNTVDPDAERAAYGRAALEYRASLSFVESKVRSMLTAITGQ
>NZ_CP049956.1|WP_005409575.1|1796884_1797292_-|flagellar-basal-body-rod-protein-FlgC
MSNLPIFDIAGSALQAQSVRMSTIASNLSNADTVAGSADAVYKPLEPIFQAVTSKNDPNITSVKVKEITQSDAAPIKRYEPGHPLADGDGYIYQPDVDPVAQMVNLISTSRNYQAGVEMLTTAKELALATLTMGR
>NZ_CP049956.1|WP_032966708.1|1809912_1810128_-|hypothetical-protein
MTLIRALPSLTDTERPRNASVREQLQQLEDVAREEIRELQQLADARPAPSRADEALLGLAWDLGLDGEALK
>NZ_CP049956.1|WP_005409587.1|1810226_1811417_-|chemotaxis-protein
MYSRIFIRLAAPLALTLLLPFAIGFEWPAALRWAILTTMTLSWLGFAWWTTRAQAHRSPEHARVLREQDQLLTELRNFVGNEIEGSRGEVERARDLIRQAVSSLGGSFDAMNRKSRQQSQALSRIVDRAGDEGNAGLDVARFAQHASHRMEQLVEALEQVSGQSSTTVQHIDQMAQHLDGIFALLEDVKSIADQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLSERSTTFNEQIRKLAHSSKDAIAKVRETVSHMASRDMDRSREARQEAAAMLDNVAQINASLGDGMREVSECARSIDGSVAEAVRALQFEDIATQALGGVHTHLDRLTAINREAVALQELLHRNGGVFDEEIATALQRTGSRLRELRSEWERPPHKPVAQQSMGAGTVELF
>NZ_CP049956.1|WP_165710443.1|1811636_1812251_-|high-frequency-lysogenization-protein-HflD
MSFTVDDRVLALAGIAQALQQVRRIADTGHSDAAAVRTAVDSVFRVDASSPQEVFGDRHALKSGLRLLHNYFRSQGQDPILPKLALSVLQLERRFVQDSATVNKVASGIERAQRQATELGDSGHPDVLANLGGLYADTISHLKPRVMVQGNPHYLGQAGVVAEIRALLLAAVRAAVLWRQLGGSYWDFLFGRKAMIEAVDRQLA
>NZ_CP049956.1|WP_164170759.1|1812247_1813390_-|tRNA-2-thiouridine(34)-synthase-MnmA
MSTPRVMVGVSGGVDSSVAAWRLVQQGEAVAGLFMQNWADDGSGDCRAEDDRRDAVAVCGLLGIPFHFRDFSSEYWQGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAARELGAERIATGHYARVTQRGHQWLLLRGADRSKDQSYFLHQLGQEQLSATLFPIGDLEKTDLRRIARDVSLPTHAKKDSTGICFIGERDFREFLGRYLPAKPGQILDPADGSVIAEHPGVFYFTLGQREGLNIGGVRGRPAAPWYVVGKDVASNVLYVDQDRDSKWMLSDRLRSETAHWIAGSPPARRFECTAQTRYRQPDEPCTVEVLDDGSVLVTFARPQRAVTPGQSLVLYDGDVCLGGAVIAATDAPLEQRLRTTPSPFEVIAA
>NZ_CP049956.1|WP_005413281.1|1813386_1813848_-|NUDIX-hydrolase
MNATPDPRWAPHATVATVVVDGGRVLLVEETIDGRQVLNQPAGHLEPGESLAEAALRETREETGWTVQLIHFIGCYQWTAGDGTAFLRFCYAARPVSHDPAQPLDTGIDRALWLTPAELQAAGERQRSPLVWQVVADYLGGQRHPLSLVREVA
>NZ_CP049956.1|WP_005409591.1|1813849_1814320_-|hypothetical-protein
MKRTLLPALLIALAATGSAAAADADKAVARHLDKLGYTYEVDEDGDYRMVFDVEGDRTQMVYVRSSVEDFGTHNIREIWSPAYNAKTKQFPVAVANRLLEDSQDAKMGGWVKQDTTAMFVVKIDADATADQLSDAIDAAIRTADAMELELTKKDEF
>NZ_CP049956.1|WP_005409592.1|1814432_1814759_+|ATP-dependent-Clp-protease-adapter-ClpS
MPHESSPDSQHEHGVAVEAARPEVAPPPFYQVMLLNDDYTPMDFVVDVLQQFFSMDLDKATQVMLHVHTRGRGVCGVFTREVAETKVAQVNEYSRMNQHPLLCTMEKA
>NZ_CP049956.1|WP_165710444.1|1814893_1815706_-|APH(6)-family-putative-aminoglycoside-O-phosphotransferase
MSEPYLSRWRLRRDGPALRTPHARLWPVLTAADEPAMLKISSETEEQNSHRLLRWWNGDGAARLLAHEGPAILIERARGDSLRQRSIEGDDDACTAILCQVLQRLHRPRSAPPAELVCLRTWFADLLQPRAVLPPLLEQCRSLAEGLLRDEQEIRPLHGDLHHDNVLDFGPRGWLAIDPKRLLGDRAFDYTTMFSNPDLCGPGIHVATRPERFAIRLEQVCALAELERTRLLRWIAASTALSAVWFRDDGDPADIDETVARMALEALAER
>NZ_CP049956.1|WP_005409594.1|1815844_1818130_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MFSKDLEHTIGQCYKRAREARHEFMTVEHLLLALLDNPSAQAVLKACGADADRLRQELEQAIEASVSRLAEDDGRDTQPTLGFQRVLQRAVYHVQSSGKKEVTGANVLVAIFGEKDSHAVYYLNQQDVTRLDVVNYLSHGIAKLGDEGEQSSSSPEGESRMEGGEGEPKGDALTEFASNLNDQARAGRIDPLVGRADEIERTIQVLCRRRKNNPLYVGEAGVGKTAIAEGLARRIIEGSVPDVLADAVIYSLDLGALVAGTKYRGDFEKRLKSVLTALKKVPNAVLFIDEIHTIIGAGSASGGTMDASNLIKPALASGELRCIGSTTFQEYRGIFEKDRALARRFQKIDIVEPTVGETYEILQGLKSKYELHHGVTYSDEALQAAVDLSVKHIGDRLLPDKAIDVIDEAGARQRLLPEEQRKELIDVEEVEAIVAKMARIPAKQVSATDKDVLQHLERNLKMVIFGQDPAIETLSSAIKLARSGLGNPEKPIGNFLFAGPTGVGKTEVTKQLALQLGIELVRFDMSEYMEPHSISRLIGAPPGYVGFDQGGLLTEKIVKTPHCVLLLDEIEKAHPDIFNILLQVMDRGVLTDTNGREANFKNVVLVMTTNAGAAQASRRSIGFTKQDHATDAMETIRRSFTPEFRNRLDAVVQFQALGFEHILRVVDKFLIELEMLLQDKHVSLSATPTARDWLAHHGFDPLMGARPMARVIQDKIKRPLADELLFGKLVNGGKVSIDVRDDELVVETQAEPERLLPVTVE
>NZ_CP049956.1|WP_032966709.1|1818208_1818592_-|hypothetical-protein
MNALLPHVLLPAVLLVSLPLAAFAAEPSKPSNASECIALGANRDIRPSSTEREVLLRDGDNHYRVHLQKRCLGAAASASYVFFTPSTPERICGDARSTLKTDSNHCTVTRIEPIDAATFRRLAQQGR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP049956_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049956_2

1814803-1814885

Orphan

Consensus_repeat	Method
GTGCCCACCAAGGTGGGCACCTACCAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP049956_2

>merge|NZ_CP049956|2|1814803-1814885|CRISPRCasFinder
GTGCCCACCAAGGTGGGCACCTACCAAGGCAGAAGCCCGTATCGACCGTGGATGGGTGCCCTCCAAGGTGGGCACCTACCAAG

>NZ_CP049956|2|2|1814803-1814885|CRISPRCasFinder
GTGCCCACCAAGGTGGGCACCTACCAAG	GCAGAAGCCCGTATCGACCGTGGATGG
GTGCCCTCCAAGGTGGGCACCTACCAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049956.1\|WP_032966708.1\|1809912_1810128_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049956.1\|WP_062606993.1\|1822513_1823485_-\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|182343
NZ_CP049956.1\|WP_165710444.1\|1814893_1815706_-\|APH(6)-family-putative-aminoglycoside-O-phosphotransferase	unknown	unknown	gnl\|CDD\|226100
NZ_CP049956.1\|WP_165710446.1\|1821286_1822411_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|377314
NZ_CP049956.1\|WP_005409591.1\|1813849_1814320_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049956.1\|WP_088428725.1\|1804132_1806235_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|226951
NZ_CP049956.1\|WP_165710443.1\|1811636_1812251_-\|high-frequency-lysogenization-protein-HflD	unknown	unknown	gnl\|CDD\|234690
NZ_CP049956.1\|WP_005409592.1\|1814432_1814759_+\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NZ_CP049956.1\|WP_100438510.1\|1806366_1809126_+\|phosphodiesterase	unknown	unknown	gnl\|CDD\|236645
NZ_CP049956.1\|WP_005409602.1\|1826118_1828062_+\|DUF3857-domain-containing-protein	unknown	unknown	gnl\|CDD\|379003
NZ_CP049956.1\|WP_005413277.1\|1809268_1809775_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049956.1\|WP_164170759.1\|1812247_1813390_-\|tRNA-2-thiouridine(34)-synthase-MnmA	unknown	unknown	gnl\|CDD\|234664
NZ_CP049956.1\|WP_005409594.1\|1815844_1818130_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
NZ_CP049956.1\|WP_005413281.1\|1813386_1813848_-\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239647
NZ_CP049956.1\|WP_032966047.1\|1819097_1819838_-\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
NZ_CP049956.1\|WP_005409596.1\|1818792_1819011_-\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
NZ_CP049956.1\|WP_005413288.1\|1823718_1826079_+\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|236669
NZ_CP049956.1\|WP_005409587.1\|1810226_1811417_-\|chemotaxis-protein	unknown	unknown	gnl\|CDD\|206779
NZ_CP049956.1\|WP_165710445.1\|1819910_1821179_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049956.1\|WP_032966709.1\|1818208_1818592_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP049956.1\|WP_062606993.1\|1822513_1823485_-\|thioredoxin-disulfide-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	1.96453e-154
NZ_CP049956.1\|WP_165710444.1\|1814893_1815706_-\|APH(6)-family-putative-aminoglycoside-O-phosphotransferase	gnl\|CDD\|226100	COG3570, StrB, Streptomycin 6-kinase [Defense mechanisms].	3.65743e-74
NZ_CP049956.1\|WP_165710446.1\|1821286_1822411_-\|N-acetyltransferase	gnl\|CDD\|377314	pfam04339, FemAB_like, Peptidogalycan biosysnthesis/recognition. FemAB_like is a family of both baterial and Viridiplantae proteins with responsibility for building interpeptide bridges in peptidoglycan. Such a function is feasible for bacteria but less likely for the plant members of this family. Perhaps the plant-members are using homologous proteins to recognize bacterial peptidoglcans as part of their innate immune system.	0
NZ_CP049956.1\|WP_165710443.1\|1811636_1812251_-\|high-frequency-lysogenization-protein-HflD	gnl\|CDD\|234690	PRK00218, PRK00218, lysogenization regulator HflD.	1.08347e-85
NZ_CP049956.1\|WP_088428725.1\|1804132_1806235_-\|PAS-domain-S-box-protein	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	5.59366e-43
NZ_CP049956.1\|WP_005409587.1\|1810226_1811417_-\|chemotaxis-protein	gnl\|CDD\|206779	cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP), signaling domain. Methyl-accepting chemotaxis proteins (MCPs or chemotaxis receptors) are an integral part of the transmembrane protein complex that controls bacterial chemotaxis, together with the histidine kinase CheA, the receptor-coupling protein CheW, receptor-modification enzymes, and localized phosphatases. MCPs contain a four helix trans membrane region, an N-terminal periplasmic ligand binding domain, and a C-terminal HAMP domain followed by a cytoplasmic signaling domain. This C-terminal signaling domain dimerizes into a four-helix bundle and interacts with CheA through the adaptor protein CheW.	7.72638e-31
NZ_CP049956.1\|WP_005409592.1\|1814432_1814759_+\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	4.26539e-44
NZ_CP049956.1\|WP_005409602.1\|1826118_1828062_+\|DUF3857-domain-containing-protein	gnl\|CDD\|379003	pfam12969, DUF3857, Domain of Unknown Function with PDB structure (DUF3857). This family is based on the first domain of the PDB structure Structure 3KD4(residues 1-228). It is structurally similar to domains in other hydrolases, eg. M1 family aminopeptidase (3ebi, Z=10, rmsd 3.6A for 152 CA, seq id 12%), despite lack of any significant sequence similarity.	7.64983e-28
NZ_CP049956.1\|WP_164170759.1\|1812247_1813390_-\|tRNA-2-thiouridine(34)-synthase-MnmA	gnl\|CDD\|234664	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed.	0
NZ_CP049956.1\|WP_005409594.1\|1815844_1818130_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
NZ_CP049956.1\|WP_005413281.1\|1813386_1813848_-\|NUDIX-hydrolase	gnl\|CDD\|239647	cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	2.42301e-69
NZ_CP049956.1\|WP_032966047.1\|1819097_1819838_-\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	2.09039e-129
NZ_CP049956.1\|WP_005409596.1\|1818792_1819011_-\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	7.64978e-48
NZ_CP049956.1\|WP_005413288.1\|1823718_1826079_+\|DNA-translocase-FtsK	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0
NZ_CP049956.1\|WP_100438510.1\|1806366_1809126_+\|phosphodiesterase	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	1.00014e-104

>NZ_CP049956.1|WP_005409592.1|1814432_1814759_+|ATP-dependent-Clp-protease-adapter-ClpS
MPHESSPDSQHEHGVAVEAARPEVAPPPFYQVMLLNDDYTPMDFVVDVLQQFFSMDLDKATQVMLHVHTRGRGVCGVFTREVAETKVAQVNEYSRMNQHPLLCTMEKA
>NZ_CP049956.1|WP_005409591.1|1813849_1814320_-|hypothetical-protein
MKRTLLPALLIALAATGSAAAADADKAVARHLDKLGYTYEVDEDGDYRMVFDVEGDRTQMVYVRSSVEDFGTHNIREIWSPAYNAKTKQFPVAVANRLLEDSQDAKMGGWVKQDTTAMFVVKIDADATADQLSDAIDAAIRTADAMELELTKKDEF
>NZ_CP049956.1|WP_005413281.1|1813386_1813848_-|NUDIX-hydrolase
MNATPDPRWAPHATVATVVVDGGRVLLVEETIDGRQVLNQPAGHLEPGESLAEAALRETREETGWTVQLIHFIGCYQWTAGDGTAFLRFCYAARPVSHDPAQPLDTGIDRALWLTPAELQAAGERQRSPLVWQVVADYLGGQRHPLSLVREVA
>NZ_CP049956.1|WP_164170759.1|1812247_1813390_-|tRNA-2-thiouridine(34)-synthase-MnmA
MSTPRVMVGVSGGVDSSVAAWRLVQQGEAVAGLFMQNWADDGSGDCRAEDDRRDAVAVCGLLGIPFHFRDFSSEYWQGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAARELGAERIATGHYARVTQRGHQWLLLRGADRSKDQSYFLHQLGQEQLSATLFPIGDLEKTDLRRIARDVSLPTHAKKDSTGICFIGERDFREFLGRYLPAKPGQILDPADGSVIAEHPGVFYFTLGQREGLNIGGVRGRPAAPWYVVGKDVASNVLYVDQDRDSKWMLSDRLRSETAHWIAGSPPARRFECTAQTRYRQPDEPCTVEVLDDGSVLVTFARPQRAVTPGQSLVLYDGDVCLGGAVIAATDAPLEQRLRTTPSPFEVIAA
>NZ_CP049956.1|WP_165710443.1|1811636_1812251_-|high-frequency-lysogenization-protein-HflD
MSFTVDDRVLALAGIAQALQQVRRIADTGHSDAAAVRTAVDSVFRVDASSPQEVFGDRHALKSGLRLLHNYFRSQGQDPILPKLALSVLQLERRFVQDSATVNKVASGIERAQRQATELGDSGHPDVLANLGGLYADTISHLKPRVMVQGNPHYLGQAGVVAEIRALLLAAVRAAVLWRQLGGSYWDFLFGRKAMIEAVDRQLA
>NZ_CP049956.1|WP_005409587.1|1810226_1811417_-|chemotaxis-protein
MYSRIFIRLAAPLALTLLLPFAIGFEWPAALRWAILTTMTLSWLGFAWWTTRAQAHRSPEHARVLREQDQLLTELRNFVGNEIEGSRGEVERARDLIRQAVSSLGGSFDAMNRKSRQQSQALSRIVDRAGDEGNAGLDVARFAQHASHRMEQLVEALEQVSGQSSTTVQHIDQMAQHLDGIFALLEDVKSIADQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLSERSTTFNEQIRKLAHSSKDAIAKVRETVSHMASRDMDRSREARQEAAAMLDNVAQINASLGDGMREVSECARSIDGSVAEAVRALQFEDIATQALGGVHTHLDRLTAINREAVALQELLHRNGGVFDEEIATALQRTGSRLRELRSEWERPPHKPVAQQSMGAGTVELF
>NZ_CP049956.1|WP_032966708.1|1809912_1810128_-|hypothetical-protein
MTLIRALPSLTDTERPRNASVREQLQQLEDVAREEIRELQQLADARPAPSRADEALLGLAWDLGLDGEALK
>NZ_CP049956.1|WP_005413277.1|1809268_1809775_-|hypothetical-protein
MAITLIALLLIETVLLMAWVAGYFSWGITLFNERIAASPAMQARLSLGSLERDLPQDRWLQLAFHALPDGSMAFRESFAPSFGLRYFPVMRGRIVLNARRHEVRVIGLCSWFVAILSLLLLPLVAMRPVVAPMLLVLPLFLASYLVQKRRYAAIVEALRVQLRADFPR
>NZ_CP049956.1|WP_100438510.1|1806366_1809126_+|phosphodiesterase
MDQGIIASLLQHPLASALVIVDRTGRPLAANPAAREHGLPATVAAYAPMLEDLRLMAADGGIVACTLPGGPHGHYDGHLRAVHDGAGNLLAFTLSIPEPVPLGGGGRWELALDSAGHSLWDWDIPSDRVVRTPAVGDETATEMLARVHGEDIAQVRAALEEHLRGLSEQYSAQFRFRQADGQWRWVLDRGRVVARTADGQPLRMVGTHTDIEQQKQLEGLLQEQQLHLSEAQRIASMGSWSFDPNSGHFWWSPELRSMLALEQGAVPGQRRWLKQLHPRSRGALRAAWRRLWRDGRAANLELELTRGNEPSQHLRLWMQPLLDMDGQPKRLLGQVQNITEQHQTDALIRWRTELLNRVSALGRIGGCEIEVKTRHMQWTEECYRIHGLRKEPITLDQALALYTEDSRNAFEAALARIANGGLPEQLDLCFYRQSGLRVWVQVLIELDRRDGLPPRFVVLFRDITREREANERIELLAHYDLLTGLPNRVLLGEQTAEAIEEARDRGTSLAMLFIDLDGFKTINDSFGHATGDALLKAAATRLHQNLRNNDLFGRFSGDEFIVVLRDLAEPEDAGHVARKLIASLAEPLRRGETTLKVGASVGIAMLGDAQTDFGSLLRAADAAMYAAKEAGRNTYQYYSQDALARIQRKLELEHALHGAIEREEFSLAYQPLLHAHHGEPPAIEALLRWHRPGIGYCSPAEFIPIAEKCGEIVRIGDWVLNEACRQATAWDRAGLRFDRIAVNVSAVQLRDRGFAERVIEICHAHGWPPQRLELELTESALIRDTDILRHCFDVLERHGVPLAVDDFGTGFSNLNYLNRFPVGRLKIDRSFVQGMLHDSGTAEVTQAIVHLGHALGMKVVAEGVETHQEEDMLRRQGCDEIQGYLYSRPLSPRDLAQWLRQPQPVSLRTDASGEVMLVR
>NZ_CP049956.1|WP_088428725.1|1804132_1806235_-|PAS-domain-S-box-protein
MPAEPTGTALVPDPRMAQALSRDRRRVVLSYLVMALAWMIASDSAVQALVPDPQQAAMWQSVKGSFFALASAGLLYLLLRPLAEHVLHTHARQQASELRLRQMFEGNPGPILVYDLDTLAILDANPAACIAFGWERDELLEQTIDALWPPGQDQALQTKLEAIREAPEELCILRTQLQLRDGSLRQMELRSNAISYDGHNARLLIAIDRTAEDLAQLRRDQALARVEEAHELARIGAWELDPSTGMGRYSNQVYRLLGRRPPEARRWHRFDELLVPADPATATQTEQLLADLCSGDPVQVDVLLPLLSMDGRALMVHLRAASGVDESGRSRVLGTLQDVTEREQSRRLLREREEQFRELVRVLPDGVVILSDEHVLYTNAWAASLFGYGSHTLLGEPLSALVAAGDLARVRGQLRAGQPHLGPGHSSVVAMQRADGRSFHAGLAVGEVRYGGRDCKLLIVRDLSDSERTRSALETSNRELQAMAGRLFSLQEDERRAISRDLHDDIGQAITAIKLSAHAAQDEHDPQRRAEDLAQIVSLADTTVAKLRDISTLLRPPQLDALGLEAALSWQARVLFRSSQVELLAEIEPLPHRPDNSIEQACFRIAQESLTNVLRHARASQVHLQLRDIGKRSLHLQIRDDGEGFDPDGPRGLGLIVMRERAQSVGGHVRIESAHGEGTLIDVHLPYQAASMAAVESPEY
>NZ_CP049956.1|WP_165710444.1|1814893_1815706_-|APH(6)-family-putative-aminoglycoside-O-phosphotransferase
MSEPYLSRWRLRRDGPALRTPHARLWPVLTAADEPAMLKISSETEEQNSHRLLRWWNGDGAARLLAHEGPAILIERARGDSLRQRSIEGDDDACTAILCQVLQRLHRPRSAPPAELVCLRTWFADLLQPRAVLPPLLEQCRSLAEGLLRDEQEIRPLHGDLHHDNVLDFGPRGWLAIDPKRLLGDRAFDYTTMFSNPDLCGPGIHVATRPERFAIRLEQVCALAELERTRLLRWIAASTALSAVWFRDDGDPADIDETVARMALEALAER
>NZ_CP049956.1|WP_005409594.1|1815844_1818130_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MFSKDLEHTIGQCYKRAREARHEFMTVEHLLLALLDNPSAQAVLKACGADADRLRQELEQAIEASVSRLAEDDGRDTQPTLGFQRVLQRAVYHVQSSGKKEVTGANVLVAIFGEKDSHAVYYLNQQDVTRLDVVNYLSHGIAKLGDEGEQSSSSPEGESRMEGGEGEPKGDALTEFASNLNDQARAGRIDPLVGRADEIERTIQVLCRRRKNNPLYVGEAGVGKTAIAEGLARRIIEGSVPDVLADAVIYSLDLGALVAGTKYRGDFEKRLKSVLTALKKVPNAVLFIDEIHTIIGAGSASGGTMDASNLIKPALASGELRCIGSTTFQEYRGIFEKDRALARRFQKIDIVEPTVGETYEILQGLKSKYELHHGVTYSDEALQAAVDLSVKHIGDRLLPDKAIDVIDEAGARQRLLPEEQRKELIDVEEVEAIVAKMARIPAKQVSATDKDVLQHLERNLKMVIFGQDPAIETLSSAIKLARSGLGNPEKPIGNFLFAGPTGVGKTEVTKQLALQLGIELVRFDMSEYMEPHSISRLIGAPPGYVGFDQGGLLTEKIVKTPHCVLLLDEIEKAHPDIFNILLQVMDRGVLTDTNGREANFKNVVLVMTTNAGAAQASRRSIGFTKQDHATDAMETIRRSFTPEFRNRLDAVVQFQALGFEHILRVVDKFLIELEMLLQDKHVSLSATPTARDWLAHHGFDPLMGARPMARVIQDKIKRPLADELLFGKLVNGGKVSIDVRDDELVVETQAEPERLLPVTVE
>NZ_CP049956.1|WP_032966709.1|1818208_1818592_-|hypothetical-protein
MNALLPHVLLPAVLLVSLPLAAFAAEPSKPSNASECIALGANRDIRPSSTEREVLLRDGDNHYRVHLQKRCLGAAASASYVFFTPSTPERICGDARSTLKTDSNHCTVTRIEPIDAATFRRLAQQGR
>NZ_CP049956.1|WP_005409596.1|1818792_1819011_-|translation-initiation-factor-IF-1
MSKDDSIEFEGTVSETLPNTTFRVRLENGHEIIAHISGRMRKNYIRILTGDRVKVEMTPYDLTKGRITYRMK
>NZ_CP049956.1|WP_032966047.1|1819097_1819838_-|leucyl/phenylalanyl-tRNA--protein-transferase
MTRQLPWRLADAPDAPFPPAETALRQPDGLLAVGGDLHPVRLLNAYAGGIFPWFSEGEPILWWSPDPRMVFRTEGVHLSSRFRRQLRSSTWEVTADTAFSRVMRACAAAPRPGQDGTWISPAMVEAYGQLHDLGFAHSFEVWDRQTLVGGIYGVAIGSMFFGESMFSGASGGSKIALAALASTLHGWGWELIDAQVENPHLLRMGAEHLPRAEFLQHVRRAVRGDGREGPWTQAVGRLPARRLAGG
>NZ_CP049956.1|WP_165710445.1|1819910_1821179_+|hypothetical-protein
MSDAITAILDVHDNPRTCNDSQSMLLALATEQPGQLGALMRLALARRSPSSAFLDMTLDLLPDEAVAPVCAEAWRRYRDGERGELLASVIEFASYQAPQVLQDDWGALLAIASENELQLASQVWRGLPSATAVQWAQILAEADDDREMARARALLLAAQPESYAVARGYLADWGALDAEVWAHWAGVADGPLPRRLHGERPLHIRFGREQHRAQKADEPSWRKRIWRLHPTWNGGQVHHAGQMGGPLEALCGSCHAPLQRLMRTDAAALQPGAAGEITLGLCLDCCGWEDPPVRFYRHDAVGLPSCHPSQRLEVPATPTDSGDLVRAEIGLVAMDTMRWQQQDWGQSNHRQNLSRVGGAPSWVQSAWYPACIDCGEEMPFVMQLDSTLPTTSEGTLLWGSGGMLYTFWCAKCRVSGHFWQCT
>NZ_CP049956.1|WP_165710446.1|1821286_1822411_-|N-acetyltransferase
MPSPRFLDSLQSIPATDWNALHDGQNPFVSHAFLSGLEQHGCLREDWGWQPRHFTLWEGDSLVGAIPGYLKTNSHGEFVFDHAWANAYARHGRDYYPKWLGAVPYSPVTGPRLLARHDSDRATLLPALREALPALDVSSAHINFHTAVDEALFGDDWLLREDVQFQWQNPGDWATFDQFLGAMNHKHRKNIRQERAKVTRQGITFRVVHGDEASRADLQAMYRFYLQTFLEYGNAPALTEAFLRHLAISLGRGLVLFLAEQDGEPIAGALCLRGGDTLYGRYWGGATLPGLHFEACYYQGIEYCLREGLTRFEPGAQGEHKLARGFLPTLVRSRHWVADAEFAEALQDWCRRERRDVRRYQQELHGHGPFRADA
>NZ_CP049956.1|WP_062606993.1|1822513_1823485_-|thioredoxin-disulfide-reductase
MSTSLPSRHQRLVILGSGPAGWTAAVYAARANLKPVVITGLQQGGQLMTTTEVDNWPGDAHGLMGPDLMARMQAHAERFETEVIFDHIHTADLSQRPFKLIGDSHEYTCDALIIATGATAKYLGIPTEDEFKGRGVSACATCDGFFYRDQDVVVVGGGNTAVEEALYLSNIARKVYLVHRRDTLKAEKIMQDKLFKKVAEGKIETVWHHQVEEVLGNDAGVTGVRVKSTQDGSTRDIDAHGFFVAIGHHPNTTLFDGQLAMNNGYLEIRSGLGGNATQTSVEGVFAAGDVADQHYRQAITSAGFGCMAALDAERYLDAQGKAS
>NZ_CP049956.1|WP_005413288.1|1823718_1826079_+|DNA-translocase-FtsK
MAKQVPERSKSDDSKASRRTAAAATTDNPRRQRLWRDLGLIAIAPALLYLAASLFTYSATDPGWSHTGSVVAPVHNLGGRAGAWIADVLLQLFGYIAFLLPVVLGALAWIAMFGLKRESKGENDLDPALRLVGLVGFLIAGTGFLHVRLFSGDVSSAGGILGKLVGNSLTVGFGALGANLFVLVLLLASITLATGLSWFTVMEKIGRGVMSLAPLLERKKEEVTEWKQTRVMREERQEVRKADAEVRAKREPVKIEPRPEPVIEKSDRAKRDTQIPMFRGVNGDGSDLPPLALLDDPKPQPKGYDEETLETLSRQIEFKLKDFRIDAQVVGANPGPVITRFEIEPAPGIKVSQISSLDKDIARGLSVKSVRVVDVIPGKSVIGLEIPNVTREMIFLSELLRSKEYDKSASVLTLALGKDIAGRPTVADLARMPHLLVAGTTGSGKSVAVNAMVLSLLFKASPKDLRMLMIDPKMLELSVYQGIPHLLAPVVTDMKEAANGLRWCVAEMERRYKLMSAVGVRNLAGFNKKVKEAQDAGQPLMDPLFKPNPELGEAPRPLETLPFIVIFIDEFADMMMIVGKKVEELIARLAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILDQSGAETLLGHGDMLYLPPGTALPERVHGAFVSDDEVHRVVEHLKAMGPADYVDGVLDEVQTMGDGVVVGATGLPENSSSGDESDPLYDEALRVVTETRRASISGVQRRLKIGYNRAARLIEAMEAAGVVSPPEHNGDRTVLAPPPPK
>NZ_CP049956.1|WP_005409602.1|1826118_1828062_+|DUF3857-domain-containing-protein
MLHPVPSALALALAAFLAAGPALADTATSAPATAPPSTSGDTEASNNFSIVRYRADYQVRPDAGNVQTETYEVLLKTKASVEQFSQVRLSYSEKMETLEVLGAYTITADGQRRDVPADRIYTQESYSSASAAMYADRKVRVIVFPNLAPGTRLYYQVRRTQATPYFPGYFGLWETFNVFTEYEDAEVTLSAPANLPMFIDSRGVQGSDRPTVKNGQAQWRWRYQRREAMPAQNWSAAGWEFGPNIMASTYRDWSQMGRAYQLKAGPAAEVTPALQALADEITAGISDRREQADALYRWVAQNIRYVAVYLGNGGLEPNSAQSILDNHYGDCKDHVTILEALLAAKGIASSPVLIGAGGGPTLPKIPVLGRFNHAITYIPEFDLYLDSTTAWARFGQLPEGDLGAPVMRTRDATLARTPANTPERNATSMEVRFTFDANGNLRGETIPKLGENAEIGMRAQFSQLNAQNRARAEEQIMAASGFDGRGQLQIQGVPVDLTRPFGYRMAFQAEDYADFSVAGGMAVPDPPGGESVRGLYATASAPANETPFYCNASLREETYRLQFPANAPIIAIPASQRFANAAGEYRVDWSREGQEVIVHHRLQQNAVRGPEALCQPQDYPAFRALYREVRRGFRGQVLYGKLPGSGG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP049956_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049956_3

2111776-2112016

Orphan

Consensus_repeat	Method
CTGAGGCTGGCCCAGCCATCCACGCATGGCGTGGATCTACTGCCGAGCGGCTTCTACTGCCCG	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP049956_3

>merge|NZ_CP049956|3|2111776-2112016|PILER-CR
CATCCACGCATGGCGTGGATCTACTGCCGAGTGGCTTCTACTGCCGGGCCTGCCCTGGTGGGTGGCGAGCGTTGGTCGGCACTGAGGCTGGCCCAGCCATCCACGCATGGCGTGGATCTACTGCCGAGCGGCTTCTACTGCCCGGCCTGCCCTGGTGGGTGCCGACCGTTGGTCGGCACTGAGGCTGGCCCAGCCATCCACGCATGGCGTGCATCTACTGCCGAGCGGCTTCTACTGCCCG

>NZ_CP049956|3|1|2111776-2112016|PILER-CR
CATCCACGCATGGCGTGGATCTACTGCCGAGTGGCTTCTACTGCCGGGCCTGCCCTGGTGGGT	GGCGAGCGTTGGTCGGCACTGAGGCTGGCCCAGCCA
TCCACGCATGGCGTGGATCTACTGCCGAGCGGCTTCTACTGCCCGGCCTGCCCTGGTGGGTGC	CGACCGTTGGTCGGCACTGAGGCTGGCCCAGCCA
TCCACGCATGGCGTGCATCTACTGCCGAGCGGCTTCTACTGCCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049956.1\|WP_049470199.1\|2107491_2109108_-\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	unknown	unknown	gnl\|CDD\|225387
NZ_CP049956.1\|WP_165710507.1\|2129164_2131546_-\|type-II-secretion-system-secretin-GspD	unknown	unknown	gnl\|CDD\|274175
NZ_CP049956.1\|WP_165710505.1\|2112316_2124700_-\|filamentous-hemagglutinin-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|372178
NZ_CP049956.1\|WP_062606527.1\|2132066_2133230_-\|general-secretion-pathway-protein-GspL	unknown	unknown	gnl\|CDD\|273768
NZ_CP049956.1\|WP_062606526.1\|2131542_2132070_-\|general-secretion-pathway-protein-GspM	unknown	unknown	gnl\|CDD\|377391
NZ_CP049956.1\|WP_049470204.1\|2109775_2110225_-\|general-secretion-pathway-protein	unknown	unknown	unknown
NZ_CP049956.1\|WP_076740081.1\|2134141_2134579_-\|type-II-secretion-system-major-pseudopilin-GspG	unknown	unknown	gnl\|CDD\|130771
NZ_CP049956.1\|WP_165710504.1\|2102751_2104497_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|374891
NZ_CP049956.1\|WP_165710508.1\|2133226_2134132_-\|type-II-secretion-system-minor-pseudopilin-GspK	unknown	unknown	gnl\|CDD\|377165
NZ_CP049956.1\|WP_005409874.1\|2105244_2105658_-\|biopolymer-transporter-ExbD	unknown	unknown	gnl\|CDD\|223917
NZ_CP049956.1\|WP_012480446.1\|2127734_2129168_-\|type-II-secretion-system-ATPase-GspE	unknown	unknown	gnl\|CDD\|131585
NZ_CP049956.1\|WP_076740082.1\|2134636_2135221_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049956.1\|WP_049396082.1\|2110340_2110787_+\|type-II-secretion-system-minor-pseudopilin-GspH	unknown	unknown	gnl\|CDD\|130769
NZ_CP049956.1\|WP_043033319.1\|2105668_2107453_-\|MotA/TolQ/ExbB-proton-channel-family-protein	unknown	unknown	gnl\|CDD\|227622
NZ_CP049956.1\|WP_005409883.1\|2124899_2126075_-\|alkaline-phosphatase	unknown	unknown	gnl\|CDD\|270283
NZ_CP049956.1\|WP_032966058.1\|2111142_2111757_+\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|227132
NZ_CP049956.1\|WP_049454600.1\|2110783_2111146_+\|type-II-secretion-system-minor-pseudopilin-GspI	unknown	unknown	gnl\|CDD\|273767
NZ_CP049956.1\|WP_049396083.1\|2109309_2109645_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049956.1\|WP_165710506.1\|2126527_2127727_-\|type-II-secretion-system-inner-membrane-protein-GspF	unknown	unknown	gnl\|CDD\|273980
NZ_CP049956.1\|WP_005409873.1\|2104539_2105205_-\|TonB-family-protein	unknown	unknown	gnl\|CDD\|223880

Protein	Function_ID	Function_description	E-value
NZ_CP049956.1\|WP_049470199.1\|2107491_2109108_-\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	gnl\|CDD\|225387	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion].	2.10996e-77
NZ_CP049956.1\|WP_165710507.1\|2129164_2131546_-\|type-II-secretion-system-secretin-GspD	gnl\|CDD\|274175	TIGR02517, Putative_type_II_secretion_system_protein_D, type II secretion system protein D. In Gram-negative bacteria, proteins that have first crossed the inner member by Sec-dependent protein transport can be exported across the outer membrane by type II secretion, also called the main terminal branch of the general secretion pathway. Members of this family are general secretion pathway protein D. In Yersinia enterocolitica, a second member of this family is part of a novel second type II secretion system specifically associated with virulence (See ). This family is closely homologous to the type IV pilus outer membrane secretin PilQ (TIGR02515) and to the type III secretion system pore YscC/HrcC (TIGR02516). [Protein fate, Protein and peptide secretion and trafficking].	0
NZ_CP049956.1\|WP_165710505.1\|2112316_2124700_-\|filamentous-hemagglutinin-N-terminal-domain-containing-protein	gnl\|CDD\|372178	pfam12545, DUF3739, Filamentous haemagglutinin family outer membrane protein. This domain family is found in bacteria, and is approximately 110 amino acids in length. The family is found in association with pfam05860.	4.2864e-44
NZ_CP049956.1\|WP_062606527.1\|2132066_2133230_-\|general-secretion-pathway-protein-GspL	gnl\|CDD\|273768	TIGR01709, Type_II_secretion_system_protein_L, type II secretion system protein L. This model represents GspL, protein L of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking].	2.43298e-20
NZ_CP049956.1\|WP_062606526.1\|2131542_2132070_-\|general-secretion-pathway-protein-GspM	gnl\|CDD\|377391	pfam04612, T2SSM, Type II secretion system (T2SS), protein M. This family of membrane proteins consists of Type II secretion system protein M sequences from several Gram-negative (diderm) bacteria. The precise function of these proteins is unknown, though in Vibrio cholerae, the T2SM (EpsM) protein interacts with the T2SL (EpsL) protein, and also forms homodimers.	6.9812e-14
NZ_CP049956.1\|WP_005409873.1\|2104539_2105205_-\|TonB-family-protein	gnl\|CDD\|223880	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane].	2.00552e-08
NZ_CP049956.1\|WP_076740081.1\|2134141_2134579_-\|type-II-secretion-system-major-pseudopilin-GspG	gnl\|CDD\|130771	TIGR01710, Type_II_secretion_system_protein_G, type II secretion system protein G. This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	2.84981e-57
NZ_CP049956.1\|WP_165710504.1\|2102751_2104497_-\|hypothetical-protein	gnl\|CDD\|374891	pfam16930, Porin_5, Putative porin.	0
NZ_CP049956.1\|WP_165710508.1\|2133226_2134132_-\|type-II-secretion-system-minor-pseudopilin-GspK	gnl\|CDD\|377165	pfam03934, T2SSK, Type II secretion system (T2SS), protein K. Members of this family are involved in the Type II protein secretion system. The T2SK family includes proteins such as ExeK, PulK, OutX and XcpX.	3.1079e-32
NZ_CP049956.1\|WP_005409874.1\|2105244_2105658_-\|biopolymer-transporter-ExbD	gnl\|CDD\|223917	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion].	8.7853e-35
NZ_CP049956.1\|WP_012480446.1\|2127734_2129168_-\|type-II-secretion-system-ATPase-GspE	gnl\|CDD\|131585	TIGR02533, Type_II_secretion_system_protein_E, type II secretion system protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	0
NZ_CP049956.1\|WP_049396082.1\|2110340_2110787_+\|type-II-secretion-system-minor-pseudopilin-GspH	gnl\|CDD\|130769	TIGR01708, Type_II_secretion_system_protein_H, type II secretion system protein H. This model represents GspH, protein H of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	8.44171e-20
NZ_CP049956.1\|WP_043033319.1\|2105668_2107453_-\|MotA/TolQ/ExbB-proton-channel-family-protein	gnl\|CDD\|227622	COG5306, COG5306, Uncharacterized conserved protein [Function unknown].	2.50469e-41
NZ_CP049956.1\|WP_005409883.1\|2124899_2126075_-\|alkaline-phosphatase	gnl\|CDD\|270283	cd13565, PBP2_PstS, Substrate binding domain of ABC-type phosphate transporter, a member of the type 2 periplasmic-binding fold superfamily. This subfamily contians phosphate binding domain found in PstS proteins that serve as initial receptors in the ABC transport of phosphate in eubacteria and archaea. After binding the ligand, PstS interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The PstS proteins belong to the PBPII superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	8.19533e-26
NZ_CP049956.1\|WP_032966058.1\|2111142_2111757_+\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	gnl\|CDD\|227132	COG4795, PulJ, Type II secretory pathway, component PulJ [Intracellular trafficking and secretion].	3.97391e-15
NZ_CP049956.1\|WP_049454600.1\|2110783_2111146_+\|type-II-secretion-system-minor-pseudopilin-GspI	gnl\|CDD\|273767	TIGR01707, Type_II_secretion_system_protein_I, type II secretion system protein I. This model represents GspI, one of two proteins highly conserved at their N-termini and described by pfam02501 but easily separable phylogenetically. The other is GspJ. Both GspI and GspJ are proteins of the type II secretion pathway, or main terminal branch of the general secretion pathway. This pathway carries proteins across the outer membrane. Note that proteins of type II secretion are cryptic in E. coli K-12 - present but not yet demonstrated to act on any target.	6.89451e-16
NZ_CP049956.1\|WP_165710506.1\|2126527_2127727_-\|type-II-secretion-system-inner-membrane-protein-GspF	gnl\|CDD\|273980	TIGR02120, Putative_general_secretion_pathway_protein_F, type II secretion system protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher. [Protein fate, Protein and peptide secretion and trafficking].	3.33851e-161

>NZ_CP049956.1|WP_032966058.1|2111142_2111757_+|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein
MTRAARGFTLIEVMIAITIMGVLALICWRALDSVASSDQRLRRADAETTTALRVLQQFQRDIEMRADDALMNGAVRPADQPQRLLPPSLVSERHPDGSFALEITRSLGSDGLRWQRVRWWRQGSTLWRASGAATDRYPLPAPDRSRGIAVAQDVQRFEVRAWQPGAGWALLPSKGEVLPATGLELRLGLRDGRGPLSYRRVLEL
>NZ_CP049956.1|WP_049454600.1|2110783_2111146_+|type-II-secretion-system-minor-pseudopilin-GspI
MKRNMRGFTLIEVLIALAIVSIALAAVMRSVAVATDDQSRLRDRRLALMCAQDRWQELRLAGQPPQDARQRCVQGRSSFLVLQHIGTGSDGQPQLELSVVAEDAPRQSLARMQLPWTAAP
>NZ_CP049956.1|WP_049396082.1|2110340_2110787_+|type-II-secretion-system-minor-pseudopilin-GspH
MQHVPRGFTLLELMVVLVIIGICTAGIGLGLGSLLDPGRQLRQEAERLAQRLQVARDEARIDGRPLRWQADAAGYRFSRREGTRWVDVQRDDLLRPQQWQPAGIAVQPTTPIELSPEWIGVAWELRLSLQGRQLRLRDDGSGQLQVVQ
>NZ_CP049956.1|WP_049470204.1|2109775_2110225_-|general-secretion-pathway-protein
MDGRRWDRNRMLTLLAATLLLAVVAYWGVTLSAVAPTAAARETHAEAPARPLFDAVASLPLVRLLSPGAVQTEVVVLGVMAGDHAPLALLSVDGRPAEAYAPGQRLGPCTVLASISANAVELNQAGQLRSLPVPELPPVPSDGIVPAAP
>NZ_CP049956.1|WP_049396083.1|2109309_2109645_+|hypothetical-protein
MRESLMVELRAALALALLLVLAPVRADEAKKQEDAAPCIEVQVNGERIPAWDCLQRKLAPASKAAKSPALPEAERLMRQPGNQLMQYNLEGTRQRMGDAFGRSVVPQRPAR
>NZ_CP049956.1|WP_049470199.1|2107491_2109108_-|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein
MTPVPCRAVRLPLRLHPLVLALAALPLPLFAQEAAPAPSVNINEYIVRGNTVLDPRQIERAVEPFLGPGKTLADVEKARDAVNALYQQAGYQSVYVELPEQQVSGGVVLLKVQQTPIGQLRVVGTKHESPERIRERVPALAEGKVPDFDQAQKELTALNEGGRRQVMPLVREGQVPGTMDVDLQVEEKSPWRASASLNNDHSADTEKLRLSASLAYDNLWKRGHSANIGVYLAPEDTKQAKVFSASYTMPFEGTPWSLEGSGYKSDSRVLNAGGQVGTGTGTNVIGNGHSIGLKLNYRLAGSSQWWRQLSLGVDFKDTEEDTQMGKESLKTPLKYAPITLGFVGVRQGEQDQLSINTQLVAGTRRLFGYGSDAIGFGQKRYWADPSFVAFKAEVANTHTFSSDWQWYARGSLQVTDAPLVSAEQFAAGGMYTVRGYLSAEAIGDYGGLASLEWRTPAWSLWSGTDLRVYSFADAAYLRLRQPLPEQRDKYNLASVGLGAQLRLGEHLQLRLDYAWPYADGPVTRKDDPRLHFNISTSY
>NZ_CP049956.1|WP_043033319.1|2105668_2107453_-|MotA/TolQ/ExbB-proton-channel-family-protein
MDRLLSRVLLLLAALVALPVAAADANWWQAEWKYRKPITVDAGPQGAGLAGDPGRTPLLLRLHTGNFGFDGTQDAGNDLRFVSGDGRTVLAHQIEQFDPKLGLALVWVDVPAVSAAAPQTIWMYYGNEKAPASGNGQQVFDPDYTLVYHFAEANAPARDTTAYGNNAGAVVPPSEGSVIGRGVQLGAAPLPLPASASLAQEAGAPLTVSAWIKPGSNNAAQAIYARRDGASELVLGIENRVPFVQLNGQRSTLAQPIPEGQWAHVALTAEKGALQLYLNGRVVAQLSGELPALTTAPVVGADAPGAVQPLASFEGALDELRISRVARPAALLLADATAQGADSRLISYGADEQSAGQSHFAFILKAMPFDAWVVVAILGLMMLLSWAIMIAKGRHFGRTSKANAVFTESFGKLSGVPLRTLSDMDRQGKAPTAMHDGSLWRIYQVAIDEMQQRHQRDGNSGYLSGATIAAIRASMDAVMVREQEAMARRMNWLSTTIEGAPYVGLFGTVIGIMLVFVVAAMAGAVDINSVAPGMAAALLCTAAGLGVAIPALFGYNYLGARAEAIGADMAVFIDEFAARLAEEQDGRGPAAVQG
>NZ_CP049956.1|WP_005409874.1|2105244_2105658_-|biopolymer-transporter-ExbD
MGQKAKFGIKKREKGINVTPFVDVLLVVLVIFILTSNASIPGIEVNLPKASNSVALEKPKTKAITIDPSGQVFLDAYPVTMAELEDRLRTERATTPDFPVIVRGDAQVQYARVVEVLDLLRRLELAQVGLVTGKAQG
>NZ_CP049956.1|WP_005409873.1|2104539_2105205_-|TonB-family-protein
MRGRQLLVTVALVLAALLVLGIAVWWMLFRDTASTRRPVVQPPMLALPPPPPPPPPPPEKPPEPETPPEETIPEPEPLDQPTPAEEPTPTPDNADPVTMNADAQAGGDNFGIQSGSGGGSSGVGRGGAGNATYGRYLGYLMQQAISRDDKVKRLAFQLQVNVWLANDGRLEKVELVRGSGNEEADAAVLDALRRIGKVDQAPPPSLDFPARVLIQGRRPGA
>NZ_CP049956.1|WP_165710504.1|2102751_2104497_-|hypothetical-protein
MNDHVRARTDSRRLRPARRALLCCAVLLSLAAPAGAMAAETTMVKLIKGLIASGALKPEDGQALLVQAEAEAAAAQRGTVAAPSAASGGVALEAGDVRVPYVPQSVRDGIRDEVRQDVMAQAKSEGWAAPNEVAEWTKRIKVTGDMRVRSESRFYSERNSDIVSNWSSINSGNGFDTNTNTNLQLPPLLNTRQDRRNLWRIRARLGIEATIGQHTTAGVRLASGSNNGPVSTTEQLGGGLSKKDVWLDQAWLAYSPADWVTVRGGRFGNPFWTSDTLFSNDLNFDGLAANLKYDFNGGDLDLFGNLAVVPLEYTSDSSPSQSRVKTPNENKWLSGAQVGVNWRFNDENTLRAALGYYDFKNISGRLSSPCALYAGAVGCDTDWSRPAFMQKGNTLMLIRDIARNPLDPANTPTPQYVGLASAFRLATLNLRWDTQLAQGVGLRLDGDYIRNLAYDKQAMFSRAQNGIVNNYGAGGTASIDTFRSGDTAWMVQATFGAAELKEKGQWQALLGYKHIEADALPDAYNDPNFHLGGTNARGYYVGGAYALDARSWISGKWMAAKEVSGAPLSIDVFQLEFNTGF
>NZ_CP049956.1|WP_165710505.1|2112316_2124700_-|filamentous-hemagglutinin-N-terminal-domain-containing-protein
MSHPLPSAVHPAAPMRRNHPMAWAIAVALGSMVAPASQAQQAFSPGWFAERGAAQGSAAQSGRMPNGVPIQFQLPAQQQDAARQKLQQSIDNLGTAAQAIALQQRLQEQARQARREAGFIVADGLGKDGLSVDQNPLTRGWLNARDAIQSQGSDGRVQVTVEQTADKAILNWETFNIGGNTTLNFLQNPDWAVLNRVNDPQARPSHILGQLKADGTVFVANRNGVVFGNNSQVNVRNLLAAAARISDAQFRDNGLYSPDASSSALSDAFGKVMVEQGARIATHEPTSATRGGGYVLLAGHSVENAGHIEARKGQVQLAAGDSFVIRRGVGTATNTSSTTRGNEIAPRFVAGSTAGSVRNTGLLRAREGDVTLAGRNVEQAGVAVASTTLAQRGTVHLLASTSDAGSSVTLADGATTAVLVEDDGKATVLDTQRNSLIKESAEQDAIRAGARSATFDNLSQHNDRRDQSRVEIVSGGNIHFSADSLTVATGGQIIADAAARSYVDDAARVDVSGAVGVQVSMESNNVQVKVQGNELRDALDNRDSGKLTSSEVWVDRRRLVHVPAGTGGYAGERWYAAGGLLEVGGYLDNQGHSIGEWAAQGGTVLLGGREVITHGGSRINLAGGSLDVQSGVIRQSWVRGVDGQVYRLDDAPAEMLFDGLYSGHEVKQERWGITETFRDPIVFAAQRVDNGYTVGRDAGRLIISAPTAVLDGKVETATFQGAQQNRRPDTALEGYAQAQTAVARNAQLYLGRYDGQGRSGVFGSDVRLDDKARTKAAWSLLAPVNEVRRGTVWLDIAELSAQQWGRIDLATADRIRIDGSLRLQAGGQLNLTGSEVELAGDIGIAGGQLSAGNLLDVQGRPTALLHDGRARTAIADGTRIDLSGEWSNASLATPRDASGAWTDGGRLSLGSSHDVVVGAKATVDVEAGAALDLRGKAHIGKGGSVSLQANSSTVTTDGSGRVQLGDGSRFSGRGQGGGSFSLGTGGQVRLGDADLAGTSLRLDPGLFGSGFAQYDINGHHGVEVADGARLVAALPGLRLTQDARMATDRASALAAWDAPLYSADPSSGRVSQRAGASISLRSERNSVGGDLRVGKDALVAVDPGQTISLLGAGNIDVEGTLRAKGGRILIDDVRPENALYAGQRTERTWRFAEGALLDADADAMSLPDPSGRLRGQVRAGGRIEIGGALDWETTAFVDNRPPEAFVVVERGARLQARGASAELDIDGQGRVRVDSDGGQIVLRSANALYLEGGMDAAAGGAGARGGTLGLAFGGSIHARGASDEVLRARAISLSQHSAPAQPLPAALEYGHAALSVEQLQAGGFDNLSVFGDIRAVGDVDLRLAQSLRIHGQGTSSLGMAVDAGLSSGLRLSAPYVRLAQARWRQMPGENLQGTAAVASSGPEDHALAVQAELIDIRDVTWLPGFKHVALESRSDVRLTNGIASSGNTSALMTAGSMDVTAARLYPTTGAVGTLVAGASAQTVQTADYWADPDAVLRIHGTGAATKPAPESALGTLRLVAATVQQGGNVQAPMGTLQLGGLIQNGTVGSRVELLPGSVTSTSGAGLSLPYGGTVDGVDWRVGTRSLGSLTPAGISSMGVTLKANEIEAAPGALLDMSGGGELTGAAFVSGRGGSVDVLRTALADANPRYEFSASGNPVYAIVPGRAGTFAPSGEEGFAAPAVGQQITVPAGVPGLAAGTYTLMPASYALQPGAFRVELGATGTSGIAQPIATGTGTWRVSGQQRTALGAAISPLLTDILLTPAAVVRRHSGYNETSYNSFAQSVADRRGESRGWQTIDALGLTLALGEGAGRADTPAIRFAGTARFGAATDNGRGGTLTATLASPAVGSLEIVDGGAQSQARDRGATSSDDALNAFLPARMMIGGQFNQEASQVAVTGQARSVAIRSGVTLNAPEVLVAAASGGSGVLVEAGATLDTLSFASANANASATLPYQVSGGLLAVSNQRLNLITGTTGVEAGPVAIDIGGCQTACDGKTRLVSDGSIAVATDGALQMRDSASYGTRQLGLSMAALNLGSAESIALAAAAGALPSGMTMNQSVLQQLLRGNDATGAPALDTLSLVARDSVNVFGSVDLDARDSATGRSGLQTLVLGAQAIRGYGAATDRARVLVDTLVWDGSLAASQAPGSDASVPPADPMVDRLGAGQLDIFTRQLQLGRAPFSRPSSEVPANRQVLGFSALNLSASEQLSFSAQGTLDVFQQRGDYLADKGWQYSGGSLGIDTPLLTADPAARLRVRTGGDFRLQGGTGKAGGDALGSELSIDANRITLDSTVALASGRLSANARQGITLGSRAALDLAGRKVSLYDVDKFSWGGDVLLSSDTGDIRADAASRIDVSARNNRGGRLTVTAMAGRADLAGVLQGAATGRYDAGGTLVPYDGGELVVRARQLQDFAGLNQRLTAGGVVGGRSFQIGEGDLRIGDEVKARRVDISVDAGSLTVAGRIDASGEQVGSIRLYARDQLQVDGTLDAHGTGLRVDSHGKIIDSPNRATITLGSAEGAVGLGSAAQLDLRAGSDVTVGGRPGQNDGTPRGTLKIDVPRLGSNDAAIAAATGLRIDGAADIQLNSVRRYDDAPLAATADVRGNRAQLVTQQWLDQVVDPHSVAWIDAALDNADLQQRTRALGDVRLRPGVQVLARRSDANPDGDLTIAGDIDLSGYRYGPEANRADPSRRGFGESASLVLRAEGNINVYGSINDGFAPPPSTPDEGGWQLYEGRNGSAGQTPFGGGLVVPVDGVKLLPGTEFQAGTRLNYDVPVESITLPVGTVLPAPMVISQNLRLPAGTVLGAAVTTDSGQTLAAGTVLQQPLVLAAGARLGAGFRLRSAVQMAAQEWPAGATLPVALRLAREVELKVGAYIPSLTKVELPGNGPVNLRPADAGGNQGRNWALAPMLAEGTTSWDLTVVAGADTGAADPRSRRWGSEGSVVLADTHQGSIGTVKTEIVWVGDRALTERASLDWIGDTSYAGRPIAELADMFGFTEDEFCAMSADYCGPAPRQVAAQGSLDYWGDESYVGTPAKDFAAMFGMTEDEFCSTAPTYCAGGGTQTEVTTYGKRAGTPAWSVLRTGKGDLELLAAGDVVMKSGFGVYTAGAPTTLGEGRDAAFNSPRAAAPRNTALLGPNLVPGSYDAALAGYQAWYPDHGGNLRVEAGRDIVGDVWTGRAESGTSERDWALYSSAAVGNWLWRQGTGSTTGVEPVPTSWWVNFGAYTNVSAAAGASPRMVGFTGFGTLGGGNLTLEAGRDAGVRDAIGDALDSTIAPRSGAIIAAVGSTGRVSDGQLHLTGGGDLQLRIGGALNPNLRATFSSLNASRAGQNLDLNGTFSNLRGSLQLDAGRIGAMGVTLESYATLGQLRAADLFAADAARPMGGPVLVLGDAVAQLQARGDVVLGGVVDAGRVPLANYSAVLLDDGARAAGSTWFSLWTANTAVDLFSAGGDLAPGLAGPENVTGSNLWREQVQLVVRGGDDLLNYWLYPSRFSAIAAQGDIKLDRISTTPGTQDVILLAPSATGRLDVLAGGGIFAQPGATQIARSASDARLPGPFDPAFMAEQGDSAGNVTRTRHNLSVDGNIASPDASLPLFAFGPNTPLSSVSAALAPSRFYAVQGDIIGLATGARRTLNPNAGQRTQLNWFEAAGAVQLRAGRDILGVSMTALNTAPTDITVAAAGRDIVHLNATIAGPGNTEISAGRQLRQEDAGSIVSLGGIVQGDTRPGASIALTAGNQQIDFAALRARYLDPVNLADPAQSLSSQPGKAVKVYNQELKQWLQQRFGMAADGDAALAAFDALPQEQQRIFLRQIYYAELREGGREYTDAEGPRFGSYLRGREAIATLMPDRNAAGTAIDRTGDIVMYGGSGVRTEAGGNIELMAPGGQIVVGVQGVVPPASAGLVTQGQGDIRLFSQDSVLLGLSRVMTTFGGDILAWSEQGDINAGRGSQTTLLYTPPRRVYDGWGNVILSPQAPASGAGIATLNPIAEVRPGDVDLIAPLGTIDAGEAGIRVSGNINLAALQVLNAANIQVQGESKGLPVLASVNVNALASASAAANSASQAAQDVMRKSQDDARRNQPSVISVQILGFGSGTSSINPPARGNTANSGYDANSAFQFPQASRDEGTQRR
>NZ_CP049956.1|WP_005409883.1|2124899_2126075_-|alkaline-phosphatase
MIKYKTLAALVATALLATVGAASAQTVTGGGASLPADLYKGSSDSILPANFTYAVTGSGTGKKAFLENNSLLFSTTGTVHFAGSDSVLSSTELSTYTTNFNQPTNANRYGALIQVPSVATSVTIPFNKAGSAVDLSVAQICGVFSGAISDWSTIDANRSGPIQVVYRPESSGTSEMFSRFLTAACAAENAGTSNLVGGKFAIKSTFADLYKRDANGNLPAFLVAAPATGGTSLYNAVYAAEGRIGYVGPDVIPSVTDATKVAKVKGFSPDQVSVQATLDTVAPPTGTAAEDPANWVPVFGNPSAGYPIAGYTNLVIGQCYKDSSVATSLRGFLARHYPATYTVAYEKSITDHGFIPLTKAWRDAIRNRFVLASSTAGLNNPSTCAGIGRPL
>NZ_CP049956.1|WP_165710506.1|2126527_2127727_-|type-II-secretion-system-inner-membrane-protein-GspF
MALFDYQAANAQGRIEKGQLDADSPRGARQLLRGRGLTPVQVSAARSAGGGWGARRLSASELAWATRQLASLLAASLPLEGALSAVIEQAERPHVAQALTAVRADVRAGQRLTVALAARPRDFPPIYRALVGAGEDSGDLARVMERLADYIEERNALQAKVLTAFIYPAAISLVSVAIVIFLLSYVVPQVVTAFVQARQTLPMLTQVMLAASAFVRSWGVWVGLGIAALVVTWRLALRKPELRLRWDAMLLRLPMVGRFVLGVNSARFASTLAILLDAGVPLLRALEAARQTLGNALLARCADDVSARVREGAALGAALKVQKVYPPILVHLVASGEKTGSLAPLLDRAAQTISREIERRAMALTALLEPTMILVMGGVVLTIVLAVLMPIMEMNQLVQ
>NZ_CP049956.1|WP_012480446.1|2127734_2129168_-|type-II-secretion-system-ATPase-GspE
MSASAPLPYAWVRSHGVMLSEVGGEPVLLGTADTAAWAVAELRRRHGPLPFQALDAATWQQRLGEQYRDGGDAAAVVGAAESEVDLDRLMQDMPEVTDLLDAQDDAPVIRMINALLAQAARDGASDLHIEPFETHSVVRYRVDGTLRDMVQPRRALHAALVSRIKIMAHLDIAEKRLPQDGRIAIRVGGRPLDIRVSTVPTAHGERAVLRLLEKDAGRLQLQRLGMADDTLATFTGLIRQPHGIVLVTGPTGSGKTTSLYAALGQLDSSTSNILTVEDPVEYDFAGIGQIQVNARIGMSFGTALRAILRQDPDTIMIGEIRDLETAQIAVQSSLTGHGVLASLHTNDAISAVTRLADMGVEPFLLASSLRGVLAQRLVRRLCTQCRRAEVDGEGRTVWRAVGCAACANSGYRGRTGIHELFVVDDRVRALIHEGQGEPALREAARRAGMRTLRQDGQRWVDSGVTTLEEILRVTGDD
>NZ_CP049956.1|WP_165710507.1|2129164_2131546_-|type-II-secretion-system-secretin-GspD
MRAMRSLACSTALALIVCMAHAPALVLAQDTRDEPVQLNLVDTDIGGVLRMAARFTGRQFLVDPRVTGKMTVVSDGPVSRTQAYQLLLGALRMRGFAVVENGGVSRVVPQADAKLLGGRVGSGGAGGEIATRTFALRYENAAALVAVLRPMISPDNPITANPGNNTLVITDYADNLERIARVIASVDTPAGMDTDVVKLQQGIAVDVAAMVAPLLDAQGAEPTQKVVVMADPRSNSVLLRSSSPGRTRLARQLVEKLDRAQDESGNLHVVYLRNAQANQLAGVLRGVVAGQSDAPAMGSNEGITPLPGDASHSTPAQPSQPQQAKPGGNALESQRLDPSRRDPIDAGSTGFSQNGISVQADVATNTLLISAPEPVYRNLRRVIDQLDQRRAQVLVESLIVEVNQTDAAELGVQWMLGNGRTFGGTHFGGTTGGSGLNTTARTTLDVLPKDGLKIGVIDGTINLPGVGQILNMKALANALQSKGGANILSTPNLMTLDNEAASIMVGQTVPFVSGRYVTDGGGGSNNPFQTIVREDVGLKLRVRPQISEGGTVKLDIYQEVSSIDAQSANSTAGIITNKRALDTSVLLDDGQIMVLGGLLEDSVSHGRDAVPGLGKIPVLGALFRSDTRKRAKTNLMVFLRPHVVREPAAGQRLTRDRYDYMRNAQAGAQPAQSWALPALSAPQLPPQDLSVLGQGNARDDQGQPLQNSSLAALYPSGDGDAQLVQFAQGLDPARASQGVAQVRALGLQAYAEATPGESGQRLRVRLPRDPATLDPALQQLRGLGYTPELVIGP
>NZ_CP049956.1|WP_062606526.1|2131542_2132070_-|general-secretion-pathway-protein-GspM
MTTRTLRLGEGLVGLQQRWQRLPPRDRLMLWVMVVALLVAGLWSLWLEPLLKQRTYWQAELPRLQAQSRALAPLLRARERQQLAQGQHPTLAGLRDGIKTAGLAAGLHIEARGGRWHLQVQAVPADALWNWLLPLLADPAIELRQLQLTRTGDANMPAARISGNIVMVATAGAHP
>NZ_CP049956.1|WP_062606527.1|2132066_2133230_-|general-secretion-pathway-protein-GspL
MNVQLRVRLPALERLHADSAVDWAQLHKGDVLAHGRDTLAALGLRHPQAAVHACLDPNDLILLELQLPPLSGRRLQSALQGEVEAMLLDDLQEVALAHGAQAADGTVPVAWLGQQAIAQVQQLLASCALQLQALYPTPLLLPWQDGHATLQVSGEHLLVRSGRDRGFVQWHGGRDACAVMQALAVRLQQAGVQAVQWIDSVPPTWPDSLPATAVTHERQTSGPLPGWSLPLLGAGRQAPRLAIGLALAAVLLAALGLQLQVSRWRIEGEALQQDMARQFSARFPEITDVVDPVLQARRALAVPLPAPPLPALQRQVASTLQAVPELAGQVRSLHYQPGQLDMELDADAQALADDPQRLEHWQQAVQAQGLQLAREAGGHLRVSGAGQ
>NZ_CP049956.1|WP_165710508.1|2133226_2134132_-|type-II-secretion-system-minor-pseudopilin-GspK
MSARMRSVSSVRQRGMAVIVALLVVALVAVIATALLTRQSAQLRALRGDQLRVQVRMAVDATLERAAQQLREDVKEQLTTVRSGRWARPLELQAPLPVQLQLVDAQSMFNLRNLLAHGRPDPEARRAFIALCAGQGLGQGACASAADHIQTRLRDGDMQAQAPLPRESLIEQALPGADPVALQALARRTVVLPAQTLVNANTSDLRVLQAVTPVVEPARLQALLGERDAGHWLLNRGDIANRLQLSNEQMAVLPLGIHSEWFLAVGQVQADGSAVNFRALLWREYRDDGVRVQRVWTRIGA
>NZ_CP049956.1|WP_076740081.1|2134141_2134579_-|type-II-secretion-system-major-pseudopilin-GspG
MARQVRVRRARQQGFSLIEIMVVVVIIGILAALIVPRLMDRPDQARVVAARQDIAALMQALKLFKLDNGRYPSAEQGLQALVKPPQGGGAMPVTPYLDRLPNDPWGHPYQYQIPGTHGDIDVFSLGADSKPGGDAGNADIGSWQL
>NZ_CP049956.1|WP_076740082.1|2134636_2135221_-|hypothetical-protein
MADSRRISMLELDRHLSQSLEQARHAPLNVQRYGRSWVWVLSSDAWADAARWAALDGSAHPLAALRKALDLQLRPWPEAAMSPLPLDAGDARLLQRAALLVVVRDLNSAQRVYDDLRYHQAYRMFIGLDHGTAWSPMQCVSLLQACAHPLLRGCIDDALASVPQHLFESACAPAARIAPAQRPAQRISSGCLSY

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP049956_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049956_4

2994680-2994784

Orphan

Consensus_repeat	Method
CGGTCGTGCCGGCCGCTGGCCGGCAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP049956_4

>merge|NZ_CP049956|4|2994680-2994784|CRISPRCasFinder
CGGTCGTGCCGGCCGCTGGCCGGCAATGCCAACCAAGGTTGGCATCCACCAGAGCCGGGCCATGCATGTGAACGCAGGCGGTAGTGCCGGCCGCTGGCCGGCAAT

>NZ_CP049956|4|3|2994680-2994784|CRISPRCasFinder
CGGTCGTGCCGGCCGCTGGCCGGCAAT	GCCAACCAAGGTTGGCATCCACCAGAGCCGGGCCATGCATGTGAACGCAGG
CGGTAGTGCCGGCCGCTGGCCGGCAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049956.1\|WP_099527725.1\|2997218_2998214_+\|YhdH/YhfP-family-quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|176183
NZ_CP049956.1\|WP_049396059.1\|2988435_2990562_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP049956.1\|WP_044570698.1\|2988055_2988346_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049956.1\|WP_049396062.1\|2992374_2993037_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049956.1\|WP_005410645.1\|2998762_2999656_-\|DnaJ-domain-containing-protein	unknown	unknown	gnl\|CDD\|182347
NZ_CP049956.1\|WP_049459393.1\|2990794_2991757_+\|L,D-transpeptidase-family-protein	unknown	unknown	gnl\|CDD\|341130
NZ_CP049956.1\|WP_005414169.1\|2995071_2995935_-\|protease-modulator-HflC	unknown	unknown	gnl\|CDD\|259803
NZ_CP049956.1\|WP_099562595.1\|2987483_2988041_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049956.1\|WP_005410632.1\|2986602_2987343_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|378820
NZ_CP049956.1\|WP_005410646.1\|2999916_3000399_+\|peroxiredoxin	unknown	unknown	gnl\|CDD\|239311
NZ_CP049956.1\|WP_012480990.1\|2986101_2986593_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237855
NZ_CP049956.1\|WP_012481000.1\|2995931_2997065_-\|FtsH-protease-activity-modulator-HflK	unknown	unknown	gnl\|CDD\|259802
NZ_CP049956.1\|WP_005414170.1\|2994818_2995004_-\|DUF2065-family-protein	unknown	unknown	gnl\|CDD\|225782
NZ_CP049956.1\|WP_005410647.1\|3000428_3001004_+\|bacterioferritin	unknown	unknown	gnl\|CDD\|225104
NZ_CP049956.1\|WP_049459394.1\|2991761_2992439_+\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|366703
NZ_CP049956.1\|WP_005410639.1\|2993154_2994447_-\|adenylosuccinate-synthase	unknown	unknown	gnl\|CDD\|234904
NZ_CP049956.1\|WP_150359233.1\|3001076_3003458_-\|penicillin-binding-protein-1C	unknown	unknown	gnl\|CDD\|227289
NZ_CP049956.1\|WP_165710781.1\|2983988_2986079_+\|catalase	unknown	unknown	gnl\|CDD\|236886
NZ_CP049956.1\|WP_165710783.1\|3003522_3008430_-\|alpha-2-macroglobulin-family-protein	unknown	unknown	gnl\|CDD\|225248
NZ_CP049956.1\|WP_005410644.1\|2998302_2998674_+\|response-regulator	unknown	unknown	gnl\|CDD\|381093

Protein	Function_ID	Function_description	E-value
NZ_CP049956.1\|WP_099527725.1\|2997218_2998214_+\|YhdH/YhfP-family-quinone-oxidoreductase	gnl\|CDD\|176183	cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	1.95195e-163
NZ_CP049956.1\|WP_049396059.1\|2988435_2990562_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	1.74043e-79
NZ_CP049956.1\|WP_165710783.1\|3003522_3008430_-\|alpha-2-macroglobulin-family-protein	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	0
NZ_CP049956.1\|WP_005410645.1\|2998762_2999656_-\|DnaJ-domain-containing-protein	gnl\|CDD\|182347	PRK10266, PRK10266, curved DNA-binding protein.	1.98574e-74
NZ_CP049956.1\|WP_049459393.1\|2990794_2991757_+\|L,D-transpeptidase-family-protein	gnl\|CDD\|341130	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD. Members of the YkuD-like family of proteins are found in a range of bacteria. The best studied member Bacillus YkuD has been shown to act as an L,D-transpeptidase that gives rise to an alternative pathway for peptidoglycan cross-linking. Another member Helicobacter pylori Csd6 functions as an L,D-carboxypeptidase and regulates helical cell shape and motility. The conserved region contains a conserved histidine and cysteine, with the cysteine thought to be an active site residue.	8.96834e-27
NZ_CP049956.1\|WP_005414169.1\|2995071_2995935_-\|protease-modulator-HflC	gnl\|CDD\|259803	cd03405, SPFH_HflC, High frequency of lysogenization C (HflC) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model characterizes proteins similar to prokaryotic HflC (High frequency of lysogenization C). Although many members of the SPFH (or band 7) superfamily are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this SPFH domain superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another SPFH superfamily member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection.	3.90151e-107
NZ_CP049956.1\|WP_005410632.1\|2986602_2987343_-\|alpha/beta-hydrolase	gnl\|CDD\|378820	pfam12146, Hydrolase_4, Serine aminopeptidase, S33. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The majority of the members in this family carry the exopeptidase active-site residues of Ser-122, Asp-239 and His-269 as in UniProtKB:Q7ZWC2.	5.63229e-08
NZ_CP049956.1\|WP_005410646.1\|2999916_3000399_+\|peroxiredoxin	gnl\|CDD\|239311	cd03013, PRX5_like, Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases, it is assumed that the oxidized cysteine is directly resolved by an external small-molecule or protein reductant, typical of a 1-cys PRX. In the case of the H. influenza PRX5 hybrid, the resolving glutaredoxin domain is on the same protein chain as PRX. PRX5 homodimers show an A-type interface, similar to atypical 2-cys PRXs.	3.28546e-78
NZ_CP049956.1\|WP_012480990.1\|2986101_2986593_+\|hypothetical-protein	gnl\|CDD\|237855	PRK14900, valS, valyl-tRNA synthetase; Provisional.	7.88881e-16
NZ_CP049956.1\|WP_012481000.1\|2995931_2997065_-\|FtsH-protease-activity-modulator-HflK	gnl\|CDD\|259802	cd03404, SPFH_HflK, High frequency of lysogenization K (HflK) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model characterizes proteins similar to prokaryotic HflK (High frequency of lysogenization K). Although many members of the SPFH (or band 7) superfamily are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this SPFH domain superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another SPFH superfamily member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection.	1.10085e-116
NZ_CP049956.1\|WP_005414170.1\|2994818_2995004_-\|DUF2065-family-protein	gnl\|CDD\|225782	COG3242, COG3242, Uncharacterized protein conserved in bacteria [Function unknown].	6.77277e-12
NZ_CP049956.1\|WP_005410647.1\|3000428_3001004_+\|bacterioferritin	gnl\|CDD\|225104	COG2193, Bfr, Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism].	2.09173e-34
NZ_CP049956.1\|WP_049459394.1\|2991761_2992439_+\|M23-family-metallopeptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	3.61158e-25
NZ_CP049956.1\|WP_005410639.1\|2993154_2994447_-\|adenylosuccinate-synthase	gnl\|CDD\|234904	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional.	0
NZ_CP049956.1\|WP_150359233.1\|3001076_3003458_-\|penicillin-binding-protein-1C	gnl\|CDD\|227289	COG4953, PbpC, Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell envelope biogenesis, outer membrane].	0
NZ_CP049956.1\|WP_165710781.1\|2983988_2986079_+\|catalase	gnl\|CDD\|236886	PRK11249, katE, hydroperoxidase II; Provisional.	0
NZ_CP049956.1\|WP_005410644.1\|2998302_2998674_+\|response-regulator	gnl\|CDD\|381093	cd17538, REC_D1_PleD-like, first (D1) phosphoacceptor receiver (REC) domain of response regulator PleD and similar domains. PleD contains a REC domain (D1) with the phosphorylatable aspartate, a REC-like adaptor domain (D2), and the enzymatic diguanylate cyclase (DGC) domain, also called the GGDEF domain according to a conserved sequence motif, as its output domain. The GGDEF-containing PleD response regulators are global regulators of cell metabolism in some important human pathogens. This model describes D1 of PleD and similar domains. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	3.3106e-35

>NZ_CP049956.1|WP_005410639.1|2993154_2994447_-|adenylosuccinate-synthase
MGQSVVVLGAQWGDEGKGKIVDLLTEEIGAVVRFQGGHNAGHTLVINGKKTVLHLIPSGILRDDALCLIGNGVVISPAALQKEIAELEASGVEVRSRLKISPAAPLIMPYHIALDQARERAAGGKAIGTTGRGIGPAYEDKVARRGIRIADLHYPKQLEELLRTALDYHNFVLTKYLNTDAVDFQKTFDEALAFGEYVQPMKSDVAGILHDLRKQGKRVLFEGAQGALLDIDHGTYPYVTSSNTTVGGALAGSGVGADSIDYVLGIAKAYATRVGGGPFPTELDDEVGQGIRDRGAEYGASTGRPRRCGWMDIVALKRAVAINGISGLCITKLDVLDGMEKLKVCIAYEYNGKRTEYAPLDAQGWEECTPVYLEFPGWSENTHGITNWDDLPPAARAYLRSLEELAGCPISIVSTGPDRDHTMVLQDPFA
>NZ_CP049956.1|WP_049396062.1|2992374_2993037_-|hypothetical-protein
MKGETVVRITLWVLWSLWGIACLVLVLGAAANTLASRTQTVPLVLSPGATAQITVYRLIDDQLRLRLRYAADGTEADPEVLLRIETPTDHGDFRAGERSGVAGQGINRGLASVESSGLMASYFGYGRGDALPRGRSWVRLTVLEVDPALADRAATVELQPPLDLLKLTDLDYVWLWPFFFWKVAALLLLIPGAALAVFTFTLRRWQHRASKQADSAVDTD
>NZ_CP049956.1|WP_049459394.1|2991761_2992439_+|M23-family-metallopeptidase
MRLSQLIVLGVLLGLGAGWWLRRDAGEPVAASLPEAQPAAAVAPAKGSVAPLGTAPAPAATAPSAARTADAPSGLLLPVQGVLASQLRDTFTDARSEGRVHDAIDIMADAGTPVLAVADGTVEKLFDSERGGLTIYQFEPSGRWCYYYAHLQRYADGLAEKQVIKRGDVLGYVGSTGNASAEAPHLHFEVHVLGPEKQWWKGESINPYPLLNPPASKPGAASAAK
>NZ_CP049956.1|WP_049459393.1|2990794_2991757_+|L,D-transpeptidase-family-protein
MPLPVYRSTLLALSLLASPAFAQAPPPGLPAPIAEKAGPDTAARSALHAQVLLDRANFSPGQIDGEVGSNQRRAVSGFQAAHGLAVTGELDDATWQALQADTVTPLASYTLTSEDVAGPFQAVPKGPAAQAKLKSLGFNNVEESLGERFHASPELLKLLNPGVDLSKAGNRIQVPNVAPSPLPKAAKVVVDKSDSSLQLLDAQGKVIAQVPVSSGSQHDPLPIGEWKILGVYRDPPFHYNPKLFWDARKGEKKATLPPGPNNPVGRVWIDLSKPHYGLHGTPEPGHVGKTESHGCVRMTNWDALRVADAVDTSVPVVMQE
>NZ_CP049956.1|WP_049396059.1|2988435_2990562_-|methyl-accepting-chemotaxis-protein
MNYLRNVRVAWRLGLGFGLLLLLVAAVVATGATASVVQKRAMQQVVDVSVAKVRLLSQMLDANNQMMVVRREMLIRQGDDRGHDEQRIADLVKRYEASWTAYQALPSDAEGKAIAETIAAKRAIARPLNKQTSELMEQGDYPGAVALTLGPVQEAANGWNKALSDGVDFEEKESREAAAEAIRLGERSLLQLLVLGGVALLVGIGASVMIGRSLTGPLARAVNLAERLSRGQLDQEFRLGGRDELTQLGEAMASVRQSVQAAIGAQLQMAEQHEAGAIRYRMDASAFPGDFGRMVQATNSLVESHVQVELLMAEVMQRYAIGDLSRDLPDYPGEKGTLTRTLAAVKQSLMAINAQIDALARAARAGDFSMRGDAAAFQFQFKAMVEHLNGMMASSQASIADVSDVLRAISHGDLTARMDGEYDGVFARMRDDANTTTAQLTGIVRGIQVAADSINNAAQELAAGNNDLSRRTEQQAANLEEAAASMEELTSTVRQNAELARQADSEAHAAGAAVRETEQAMAQMASVMGEIDQSSARISEISTVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRAGVAAKEIKELIEDAAAKVKSGLAVTVESEAAIARVAQASSRTTQLMSDIAAASKEQAAGIEQVNQVVVQMDQVTQQNAALVEEATAASRALEEQAHALTTSVAVFKVEQGARMPIVPAQAA
>NZ_CP049956.1|WP_044570698.1|2988055_2988346_+|hypothetical-protein
MKMRRLLSWTGLALCVVYLLLTAWLVHGAQSDADPKGAYILMSLPITLQSAALDAIGAGSLLYGKPWSTAYAVLVPPTLLLLYAAGWLIERAAGGR
>NZ_CP049956.1|WP_099562595.1|2987483_2988041_+|hypothetical-protein
MRWTYALAMMAMMAMMAMMLPLNSSANDGWINGAGKAMPETDAMKSSGGFAASLLVTSDADWQAKWETPPETTPGFTQADEVHPGGELFLLTFLSNPQLDENRVPKVHCDLRMLRPDGTTSIDERDVPCFTAALPGPPTLLYMTNLHLKFVAEASDPKGTWTAQVVVRDLLRNVSLPLQAHFNVR
>NZ_CP049956.1|WP_005410632.1|2986602_2987343_-|alpha/beta-hydrolase
MGIGSEEKPGCDSASPTPQHVLMLPGLDGSGRLSIPFLSALQAHGLTTQAITLPAQGGQDHATLAQRLWSQLPGHPFILLAESFSGPLAVELATRQPAGLRGLVLAATFARRPVPLPAASAALLTPAWPLPPVALLARLLLGRWRTREHLSMLRDALARIPAATLRQRAAATLRVDVRALLPAIDVPTLCLHACHDRLLWPPSVAELQALLPDARHVSLEGPHLLLQARADAAAAEVAAWMRTLSP
>NZ_CP049956.1|WP_012480990.1|2986101_2986593_+|hypothetical-protein
MPRGDKSAYSDKQKRQAEHIEESERERGASEGTAERIAWATVNKQDGGGKRSGSARKGTKKATSKKAAKKAPARKSGTKKATTKTTAAKKAPAKKTTARKAAAKKAPARKTATKKTAKKTAAKKAGTAASRSAAAKKAAKTRAAKKTVRKVAAKKAARTRARG
>NZ_CP049956.1|WP_165710781.1|2983988_2986079_+|catalase
MAASKPTGKRATTHAENHHRGNGDELHQQAGGSHPAMTTDQGIPVADNQNSLRQGPRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFELTRSLKAHTRARILTEVGVKTPVFTRFSTVAGGAGSVDTPRDVRGFAVKFYTREGNWDLVGNNIPVFFIQDAMKFPDLVHAVKMEPDRAFPQAASAHDTFWDFISLMPESMHMIMWAMSDRAIPRSLRMIEGFGVHSFRLLNEAGESTFVKFHWRPKLGIQSTVWDEALKLQSADNDFHRRDLFEAIQRGDFPEWELAVQLFTEEDADAFPFDHLDPTKIIPESLVPLQVIGRMVLDRWPDNFFAETEQVAFCPANVPPGIDFSNDPLLQGRLFSYLDTQLLRLGGPNFHQIPVNAPKCPFANHQRDGHMQMQVPKGRVAYDPSSLQEDTPRETPAGFRSHASADDGRKGRTRAESFADHYSQARMFFRSLEKPEQAHLASALVFELSKVETLKVRVRTVSHLRNIDDSLAQRVADGLALPALPDPAPTATPVRDMPPAPEVRVIGRNKPTLQGRCIGILFDEGSDARIIASLSKAARKAGADVKLVAPRVGDATLSDGALQAADGQLAGTPSAVFDAVAVVLSPEAAKALSKESAAIEFVSQAWAHLKAIASNAGGQTLLKAARVGNDAGIVEAEDAKAFLAAAATRQWAREPKLRLLA
>NZ_CP049956.1|WP_005414170.1|2994818_2995004_-|DUF2065-family-protein
MKDLFAAVCLVAVLEGLFLFVAPFAWKRMAERLLDLPSPALRSFGGLVLLAGLSLLWWVRH
>NZ_CP049956.1|WP_005414169.1|2995071_2995935_-|protease-modulator-HflC
MKSPIWIAVIVAVVLGLLGSVYVVREDQTAMVLNLGKVVRSDIKPGLHFKVPVVETVKVFDRRFQVLDTAPARYFTAEQKDVSVDFFAIGYISNVGDYFRATGGDPRIANARLAPIITDSLRNQINSRTLQQLVSGDRSELIAEQLKGINEAVAGLGMQMIDLRIKQVDLPTDSQVINDVYERMRAQRKQEAAKLRAEGEEQSLTIRAQADRDSTVLIAEAERDAQRLRGEGDAEAARIYGKAGSADPSFYAFYRSLEAYRGSMTDGNGVIVLDKNDPFLQYLKNDR
>NZ_CP049956.1|WP_012481000.1|2995931_2997065_-|FtsH-protease-activity-modulator-HflK
MAWNTPGGNKGGQGPEDNRRGPFGSRGGGNGGGWGGLPGPLKDLFDGGIVRWVVAAVVLLVLFSSFQLIGEQQRGVVLRFGQFSRILQPGPNFKLPWPIESVTKVNATEIKTFSIQVPVLTRDENIVNVSLNVQYRIDDPQQYLFGTVDANQVLEQSAQSAVREEVGRADLNAVLNNRGPLAVAAEERLQALLKAFKTGLTVTGLTLQDARPPEEVKPAFDEVNGAQQVKERLINEAQAYAAKVVPEARGQASRARTTAEGYKQAVVSKAEGDAQRFSLLQAQYKDAPEVTRKRLWLETVQQVLSENRKVIGGDGRQLIYVPMTGDTRPSTSAPAAVANPDVVMPSLPGAATEASRDPGRPVGRPTGRPNGREEGSR
>NZ_CP049956.1|WP_099527725.1|2997218_2998214_+|YhdH/YhfP-family-quinone-oxidoreductase
MAPTTPFTAFRIENDDAGYRSGLVRLGVDDLNPGQVLIRAHWSSVNYKDALAGTGKGKILRRFPLVGGIDVAGTVVASTDPDWREGDAVLATGCGLSETRDGGYSQYVRLESRAVIAQPAGLTPREAMVLGTAGFTAALALLRMQDNRQTPELGPLAVTGASGGVGALALSIFSRAGYSVHAVSGKPDQAGFLRSIGATEVLPRDALADTGALQSGRFGGGLDNAGGDMLASLLAQTVPYGSVVSAGLAASPTLDMTVMPFILRGVSLLGVSSANAPRGLREEVWSRLGSDWKPQHLDRICTAEVGLDGLPAVFERMLAGGSLGRTVVRID
>NZ_CP049956.1|WP_005410644.1|2998302_2998674_+|response-regulator
MARILIVDDSPSQLLGIQRIVEKLGHQILTATDGAAGVETAKAELPDLVLMDVVMPNLNGFQATRTLARDEATRHIPVILVTTKDQDTDRMWGMRQGAKAYITKPFSEDELSEVLERVFAGQG
>NZ_CP049956.1|WP_005410645.1|2998762_2999656_-|DnaJ-domain-containing-protein
MEFKDYYATLGVEPSAGEAEIKTAYRRLARKYHPDVSKEAGAEDKFKAVNEAYEALRDPEKRAAYDQLRAQGYRPGEEFNVPPNYGGAGGFNFEEVFGGGGPNGGFSDFFESLFARQRGGAGAGAGPGFSSQGHAPNRDTRAKLSVPLEAAYSGDSLRITVNGKQLDVRVPKGIRPGQVIRLAGQGNHGGNLLLEVEYAAHPQFEVDGRNILYTLPLTPWQAALGTSISVPTLGGAVELKIPADSDAGRKLRLRGRGLPGNPDGDQIVEIEIVAPAATDEAQKKAYRNLAKAFGETI
>NZ_CP049956.1|WP_005410646.1|2999916_3000399_+|peroxiredoxin
MTIHVGDRIPEVTLKRIREGIETLDTHSLFDARKVVLFAVPGAFTPTCSARHLPGYVEKFEAFRQRGIDVYCMAVNDPFVMKAWAADQSVPDGLLMLSDGNAELTRALGLELDASASGMGIRSRRFALYVDDGVVREAWVEQPGQFEVSSAEYVLEHLPT
>NZ_CP049956.1|WP_005410647.1|3000428_3001004_+|bacterioferritin
MSSKPAKASKPAANVPGISDRATLRERARRNLEDGAITDSYSADREVVIKLLNDALATEYVCVLRYYRHYFMAKGMLADAVKAEFLEHAQQEQAHAGKLAERIVQLGGEPDLNPDTLTARSHAEYKEGSDLRDMVRENLVAERIAIDSYREMINFIGDRDTTTKRILEEILAQEEEHADEFADLLDGWIGE
>NZ_CP049956.1|WP_150359233.1|3001076_3003458_-|penicillin-binding-protein-1C
MKNTMTTRLAALRRRLQPLWPWLRWGTAATLALLLVLDFVFPPPLPKQRDTSTLVVAADGTPLRAFADAEGVWRYPASTDSVSPLYLQALLTYEDRWFWRHPGINPLAILRASGQLLRGGRIVSGGSTLTMQVARILDPHTRTPWGKLKQMLRAVQLEVHLSKQQILALYLERAPYGGTIEGVEAASWAYLGKPAAQLSHAEAALLAVLPQAPSRLRPDRHPEAAQKARDKVLSRMAELGAWTAEEAEDARIENVVARSLRPPLHAALLAQRLHSAHPGQARIQSSIDIGLQRTLEERVASYFSTLPERTSAALLVVDNQTLQARAYVGTLAFGDRQRLGHVDMVQAWRSPGSTLKPFLYAMALDDGLIHSESLLVDAPQSFGSYRPGNFDMAFNGPIGASSALRLSLNVPSVDLLQRVGPARFAARLSHSGIQLRFPPGSTPNLSLILGGTGARLEDLVGAFAALNRNGIAGRVRYTDDEPMIERRLASPGASWIVREMLESNPRPGYSVGTFDVGGRPRVAWKTGTSYGYRDAWAIGSTRHYTVGVWVGRPDGTPLPGQYGAVTALPLMFEVVDSLPRQRGDSAAAPMPASVSQEDICWPTGERAEGLPAALCQRLMPAYLLEGAAPPTFPEREARRWQPGRQRYLADARTGLRVSADCRLPHEEVAREIARWPALLSPWLSKATREASQLPALSPDCRDDGREASVALHIDGLNDGATLARAPNSEHGVRLQLRALGSEQAVDWLLDGRWIAQTRGAQLMQREFAEPGAHTLTALAADGAWTQVRFNVLR
>NZ_CP049956.1|WP_165710783.1|3003522_3008430_-|alpha-2-macroglobulin-family-protein
MSGPARRKRWGWAAAVLAGGLLLGLAGCRNDSGQLPKASGEAITTKAEQVKEFTLLRAYPDQKNDGLSLALEFSRPLVGTQDFDKLVRFEEKVGTDDSSWTLSDDGLTLRYPFVEAGKEFSLVVSADLLAADGSRLGKELKQKVFSGELKPVVGFASQGSVLPAKDSRGLPVVSVNVPEVDVEFLRVREKDLPTFFSQYQRGGRRGSWELSSDYERSPINKLAEPVYVNRFILGGKKNERVLTYLPTQDIKELQEPGLYFALLKRTGDYEGEFDTAFFSVSDIGLHTRAYKDKLFVHTAGLKDGAPLKGIDLRVLDAKGEVVLKGSTDGNGNALLNYTLDATHVLVARTGKDTSFLPFNQPALDLSEFAVAGRDNAWFDVYAWSGRDLYRPGETVRLSALLRDNDGKPVKAQPVFLRLKQPDGKTFRETRLQPGDQGYINFEQVIPAEAPTGRWQIEFRTDPASKEAIQGMTLRIEEFLPERMKLDLDSAQKTLKPGEDLRLQANGAYLYGAPADGNRFTARMAVAAEQKPVEGLPGYFFGDPTLQLPREAKDVIDTTLPGNGQLREDVALPEEAAKAKAPIAVVLSGSLYETGGRTVTRTLKRVMWPANALVGVRPLFNPEDGADSNGNARFELMRVDAAGTPQPAKGLKITLVRELRDYHWTFNDNRWDYDFTRRFENKETRTVDAGSSAVAFDFPVEWGEYRVDVFDPSTGLTSRYPFRAGWSWGDDNRGLDARPDKIKLGLDKTGYKAGDTLEVTVTPPHAGKGILMVETDRMLYVQDIDAKPGSTFKIPVTADWERHDVYITALVFRGGSAPSKITPARAVGVVHVPMDRKGRTVAVGLAAPKQMRPEQDLPVTVSAPQLAGKMAHVTVSAVDVGILNITRFPVPDAGAHFFAQRRLGIDAYDIYSRVIESFDGGAGKLKFGGDMALQALPQAKRPTARVQTVDLFSGPVQLDAKGIARIRLKVPDFNGTLRVSALVYSDDQYGKRDVETVVRAPILAEASMPRVLAPGDRSTVTLDVQNFTGKPGQFNVKVESEGPLNLGEGSRSVQLNADAKTTLSFPLSAREGHSVAKVRVRVDGNGFKADRRYDLPVRAAWPQVLRSQVRTLDPLAAVSLDNSLTDGLMAESVNARLLVSPLPPIPFASALQGALNYPYGCAEQTTSKGYAALILDQATSSMLGADGLDAKTRRERMEGAFGRLASMQVANGNFSMWGDDGYVNPWLTPYITEFLLDAKDAGFAVPDNVLQKALNRLSEDLLSGGNQFYGQDDREKLKFANQAYSGYVLARVNRAPLGTLRTLYDNERSKAVGGLSLVHLGVALSLQGDAKRGQAALAAAFAKSSSERPSYFGDYGSAIRDDALMIALTHENKLAKPAWDARAVDLGRGLDARRNAGWMWLSTQEQVAIARLGKALAANQKALVAGELVIGGNTEAIGERKLFGRNFSANELASGVRFTPQGQPPMFASIDVAGIPRSAPAPDNSVLGVERSYYGTDGKPWSPRPLKEGEALIVRVTVTADTTMPDALLTDLLPAGLEIENFNLGDAKQWADVVVDGITISDRGEAADTKHEEFRDDRYVAALKLSRGSKANVFYLVRAVTPGTYSVPPPLVEDMYRPQLRGVGRSNPTTITVVQP

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP049956_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049956_5

3210183-3210296

Orphan

Consensus_repeat	Method
TTGGGTAGGTGCGGACCGTTGGTCCGCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP049956_5

>merge|NZ_CP049956|5|3210183-3210296|CRISPRCasFinder
TTGGGTAGGTGCGGACCGTTGGTCCGCACGACACGGTAGTGCCGGCCGCTGGCCGGCAACTTCGTGATCCGGGTGCGGATCTGCTTTGGGTGGGTGCGGACCGTTGGTCCGCAC

>NZ_CP049956|5|4|3210183-3210296|CRISPRCasFinder
TTGGGTAGGTGCGGACCGTTGGTCCGCAC	GACACGGTAGTGCCGGCCGCTGGCCGGCAACTTCGTGATCCGGGTGCGGATCTGCT
TTGGGTGGGTGCGGACCGTTGGTCCGCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049956.1\|WP_033833007.1\|3200532_3202137_-\|membrane-protein	unknown	unknown	gnl\|CDD\|225161
NZ_CP049956.1\|WP_099562842.1\|3218318_3219521_+\|lipase	unknown	unknown	gnl\|CDD\|367570
NZ_CP049956.1\|WP_012481095.1\|3219939_3221574_-\|NAD+-synthase	unknown	unknown	gnl\|CDD\|237577
NZ_CP049956.1\|WP_099485279.1\|3215367_3216138_-\|peptidoglycan-editing-factor-PgeF	unknown	unknown	gnl\|CDD\|182677
NZ_CP049956.1\|WP_165710914.1\|3216137_3217127_-\|23S-rRNA-pseudouridine(1911/1915/1917)-synthase-RluD	unknown	unknown	gnl\|CDD\|183020
NZ_CP049956.1\|WP_012481080.1\|3195983_3198569_-\|ATP-dependent-chaperone-ClpB	unknown	unknown	gnl\|CDD\|274529
NZ_CP049956.1\|WP_012481085.1\|3207044_3207527_-\|DUF3574-domain-containing-protein	unknown	unknown	gnl\|CDD\|371896
NZ_CP049956.1\|WP_049452820.1\|3214840_3215365_-\|DUF4166-domain-containing-protein	unknown	unknown	gnl\|CDD\|379359
NZ_CP049956.1\|WP_024956778.1\|3217240_3218128_+\|outer-membrane-protein-assembly-factor-BamD	unknown	unknown	gnl\|CDD\|274513
NZ_CP049956.1\|WP_099524750.1\|3199742_3200453_+\|glutathione-S-transferase	unknown	unknown	gnl\|CDD\|373097
NZ_CP049956.1\|WP_087944442.1\|3202735_3204087_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP049956.1\|WP_005410779.1\|3204302_3206021_-\|pyruvate-oxidase	unknown	unknown	gnl\|CDD\|181661
NZ_CP049956.1\|WP_062605864.1\|3206150_3207008_-\|SH3-domain-containing-protein	unknown	unknown	gnl\|CDD\|377965
NZ_CP049956.1\|WP_005410784.1\|3211213_3212995_+\|glycoside-hydrolase-family-15-protein	unknown	unknown	gnl\|CDD\|225922
NZ_CP049956.1\|WP_005414289.1\|3195110_3195911_+\|MipA/OmpV-family-protein	unknown	unknown	gnl\|CDD\|377682
NZ_CP049956.1\|WP_005410785.1\|3212991_3214356_+\|alpha,alpha-trehalose-phosphate-synthase-(UDP-forming)	unknown	unknown	gnl\|CDD\|274112
NZ_CP049956.1\|WP_005410783.1\|3210413_3211172_+\|trehalose-phosphatase	unknown	unknown	gnl\|CDD\|319767
NZ_CP049956.1\|WP_111118271.1\|3198750_3199572_-\|DUF3014-domain-containing-protein	unknown	unknown	gnl\|CDD\|378600
NZ_CP049956.1\|WP_099485278.1\|3207741_3210177_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP049956.1\|WP_049452819.1\|3214428_3214866_-\|thiol-disulfide-oxidoreductase-DCC-family-protein	unknown	unknown	gnl\|CDD\|225556

Protein	Function_ID	Function_description	E-value
NZ_CP049956.1\|WP_033833007.1\|3200532_3202137_-\|membrane-protein	gnl\|CDD\|225161	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism].	1.71886e-07
NZ_CP049956.1\|WP_099562842.1\|3218318_3219521_+\|lipase	gnl\|CDD\|367570	pfam03583, LIP, Secretory lipase. These lipases are expressed and secreted during the infection cycle of these pathogens. In particular, C. albicans has a large number of different lipases, possibly reflecting broad lipolytic activity, which may contribute to the persistence and virulence of C. albicans in human tissue.	1.17876e-06
NZ_CP049956.1\|WP_012481095.1\|3219939_3221574_-\|NAD+-synthase	gnl\|CDD\|237577	PRK13981, PRK13981, NAD synthetase; Provisional.	0
NZ_CP049956.1\|WP_099485279.1\|3215367_3216138_-\|peptidoglycan-editing-factor-PgeF	gnl\|CDD\|182677	PRK10723, PRK10723, polyphenol oxidase.	2.2107e-87
NZ_CP049956.1\|WP_165710914.1\|3216137_3217127_-\|23S-rRNA-pseudouridine(1911/1915/1917)-synthase-RluD	gnl\|CDD\|183020	PRK11180, rluD, 23S rRNA pseudouridine(1911/1915/1917) synthase RluD.	1.60004e-146
NZ_CP049956.1\|WP_012481080.1\|3195983_3198569_-\|ATP-dependent-chaperone-ClpB	gnl\|CDD\|274529	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. [Protein fate, Protein folding and stabilization].	0
NZ_CP049956.1\|WP_012481085.1\|3207044_3207527_-\|DUF3574-domain-containing-protein	gnl\|CDD\|371896	pfam12098, DUF3574, Protein of unknown function (DUF3574). This family of proteins is functionally uncharacterized. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.	6.79074e-44
NZ_CP049956.1\|WP_049452820.1\|3214840_3215365_-\|DUF4166-domain-containing-protein	gnl\|CDD\|379359	pfam13761, DUF4166, Domain of unknown function (DUF4166). This domain is often found at the C-terminus of proteins containing pfam03435.	1.71655e-22
NZ_CP049956.1\|WP_024956778.1\|3217240_3218128_+\|outer-membrane-protein-assembly-factor-BamD	gnl\|CDD\|274513	TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking].	2.53346e-90
NZ_CP049956.1\|WP_099524750.1\|3199742_3200453_+\|glutathione-S-transferase	gnl\|CDD\|373097	pfam14497, GST_C_3, Glutathione S-transferase, C-terminal domain. This domain is closely related to pfam00043.	2.03769e-30
NZ_CP049956.1\|WP_087944442.1\|3202735_3204087_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	6.31166e-56
NZ_CP049956.1\|WP_005410779.1\|3204302_3206021_-\|pyruvate-oxidase	gnl\|CDD\|181661	PRK09124, PRK09124, ubiquinone-dependent pyruvate dehydrogenase.	0
NZ_CP049956.1\|WP_062605864.1\|3206150_3207008_-\|SH3-domain-containing-protein	gnl\|CDD\|377965	pfam08239, SH3_3, Bacterial SH3 domain.	0.0047386
NZ_CP049956.1\|WP_005410784.1\|3211213_3212995_+\|glycoside-hydrolase-family-15-protein	gnl\|CDD\|225922	COG3387, SGA1, Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism].	1.56422e-84
NZ_CP049956.1\|WP_005414289.1\|3195110_3195911_+\|MipA/OmpV-family-protein	gnl\|CDD\|377682	pfam06629, MipA, MltA-interacting protein MipA. This family consists of several bacterial MltA-interacting protein (MipA) like sequences. As well as interacting with the membrane-bound lytic transglycosylase MltA, MipA is known to bind to PBP1B, a bifunctional murein transglycosylase/transpeptidase. MipA is considered to be a structural protein mediating the assembly of MltA to PBP1B into a complex.	3.76146e-39
NZ_CP049956.1\|WP_005410785.1\|3212991_3214356_+\|alpha,alpha-trehalose-phosphate-synthase-(UDP-forming)	gnl\|CDD\|274112	TIGR02400, Alphaalpha-trehalose-phosphate_synthase, alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsible for synthesis of only trace amounts of trehalose while the majority is synthesized by the TreYZ pathway; the significance of OtsA in this species is unclear (see Wolf, et al., ). [Cellular processes, Adaptations to atypical conditions].	0
NZ_CP049956.1\|WP_005410783.1\|3210413_3211172_+\|trehalose-phosphatase	gnl\|CDD\|319767	cd01627, HAD_TPP, trehalose-phosphate phosphatase similar to Escherichia coli trehalose-6-phosphate phosphatase OtsB and Saccharomyces cerevisiae trehalose-phosphatase TPS2. Trehalose biosynthesis in bacteria is known through three pathways - OtsAB, TreYZ and TreS. The OtsAB pathway, also known as the trehalose 6-phosphate synthase (TSP)/ Trehalose-6-phosphate phosphatase (TPP) pathway, is the most common route known to be involved in the stress response of Escherichia coli. It involves converting glucose-6-phosphate and UDP-glucose to form trehalose-6-phosphate (T6P), catalyzed by TPS, the product of the otsA gene, this step is followed by the dephosphorylation of T6P to yield trehalose and inorganic phosphate, catalyzed by a specific TPP, the product of otsB gene. This OtsAB (or TSP/TPP) pathway, is also the most common route known to be involved in the stress response of yeast In Saccharomyces cerevisiae, the corresponding enzymes, TPS1p and TPS2p, form a multimeric synthase complex together with additional regulatory subunits encoded by Tsl1 and Tps3. Trehalose is a common disaccharide accumulated by organisms as a reservation of carbohydrate and in response to unfavorable growth conditions. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	5.27916e-66
NZ_CP049956.1\|WP_111118271.1\|3198750_3199572_-\|DUF3014-domain-containing-protein	gnl\|CDD\|378600	pfam11219, DUF3014, Protein of unknown function (DUF3014). This family of proteins with unknown function appears to be restricted to Proteobacteria.	1.3701e-55
NZ_CP049956.1\|WP_099485278.1\|3207741_3210177_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	9.63287e-63
NZ_CP049956.1\|WP_049452819.1\|3214428_3214866_-\|thiol-disulfide-oxidoreductase-DCC-family-protein	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	2.4027e-50

>NZ_CP049956.1|WP_099485278.1|3207741_3210177_+|TonB-dependent-receptor
MSVRLPTSPLGLAIALALSSAAVPALAQDATNLDTVIVTGTRAADRTVLESTSPVDVLTAEDIRKAGVVNGELGSALQALLPSFNFPRQSNSGGADHVRAAQLRGLSPDQVLVLVNGKRRHHTALVNTDSKIGKGTTPVDFNSIPVSAIKRIEVLRDGAGALYGSDAVAGVINVILDNGGDGGEIEASYGANHTDLKPIGRTLTDGQTGNISAKVGTSLGEDGGFLRVGLEYKHRNGTNRAGFDQIPPWDQTPGNLALQGKRNYVLGDGKSKDINLWLNTEIPVGQTSTFYAFGTFNQRDTEGANYFRYPDGEANWKQVYPNGYRPISEGENRDVQAVAGVRGQWGEWSYDGSLDYGQNDFTYRLRDSLNASLGPTSPTRFKTADYEYAQTVGNLDLSRVFTQSDSISHTLGLGVEARHERYQTRPGDPASYAAGPYTDRPTGSQAGGGLTPQDAATLSRDVASAYASLSSQFGEKFSTDLAARYEHNDDFGGELTGKLGLRYEFTPAFALRGAISNNFRAPSLAQIGYESTSTGYNAGGQLVQGRLLSVNNPIARGLGAQNLKPEKSINTSLGFTSRIGEHFDLSLDFFQIDIDDRIALSESITGDALTDYVAANYGVSGLQSASFFVNAADTRTRGAELVSNWRQSLGDGQLLLTGTYAYTKTTLKNVLATPAQLRALNPDYVLFGIEETNTLTDATPRTRGSFSAAWSNDHWSLSTRVNRYGSATRVFNFGDGYIPRQTYQAEWQLDAEVEYRITPRWSVAIGGQNLTDNYPDRSNSDIHYFGNLPYDVLSPIGSNGAYYYGRVRYTF
>NZ_CP049956.1|WP_012481085.1|3207044_3207527_-|DUF3574-domain-containing-protein
MKHLGLVFAVLLATSGCASLSSQAPSAYATATTAELKGDAARPSAGHGWVRSELYFGVGEEQGAGNRPQADTISEAQWRTFLDKEVTPRFPDGLTVFDAYGQWLFRGDASPNRLRTKVLVVLHEDTQQRRADIEAIRLAWKQQTKHQSVLWSRQPVEVSF
>NZ_CP049956.1|WP_062605864.1|3206150_3207008_-|SH3-domain-containing-protein
MNYRECVLGLVLAGVLAPSAQASGDDGETLRFQVAAHVQAHADPQQDGSIAVQLSPSGKRQTLEGAADADGTSRWSLEDVDFDGYPELVARAPVGMVNEAVAVYRFDPATVGFRALQADTHGKDSCGDLMGLSVDAATRTLTSSCRSGPMWYTDQYRFAGAKLHLYRSESVLMLGDTLNAALQWEQTDEQGPLAVWRTYDPAGRVLESAIADGLGAPPDGPLRGQQATVVTARLFLFDRPGASSTKRYLVQGDRVELLDEQDGWVKLRYRNPKQGAVEGWINVND
>NZ_CP049956.1|WP_005410779.1|3204302_3206021_-|pyruvate-oxidase
MSKRVAEIVVDALQQAGVRRCYGIVGDTLNHVTDAMHGSEIAWVHVRHEEVAAFAAGADSLVSGELTACAGSCGPGSLHFINGVFESNRNRAPMVLIASQVVTSELGMEFPQEVDFKAVYASCSVFCEQVHSAEQARRVVTLACQAAISRRGVAVVILPADISQAEVKHDVPFSVHYTQPVLRPSDAELQRIAELLGQGKRIGIYAGAGCQGAHAQLLELARRLQAPIAHTSRAKDFVEPDNPYNMGMTGIFGIESGFHTLMECDTLLLLGADFAWGQFYPDKATIIQVDRDGSHLGRRHPVNLGVVGDIAPTLDALLPMLPPREDSSFLDECIERRDKALKKREQEEQPGEGELIHPQHLTALLSKYASDDALFTADGGSPMVWVLRHIRVNGRRRTLTSLLHGTMANAMPQALGLQKAFPGRQVISLSGDGGLAMLLGDLLTAVQENLPIKVVVFNNGSLNFVELEQKVEGLLDNYTDLKNPDFGRLAEVIGFHGRTVTRSEDLEEAVQDFLSQRGPALLDVHTSRAELVMPPQIEAKQVAGTALYAAKAVLNGRFDDVKHLLVDNFLKK
>NZ_CP049956.1|WP_087944442.1|3202735_3204087_-|IS3-family-transposase
MNRYDARFKLQVAKEACKTSTSVKAIARRHGLEFSTVRRWVATYRLHGWRGFHRQARFYDLPFKLAVLEKMSQDGMSGREATTYFQIGDAGAVGRWRRLYAQGGAQALAPPPPLPRKPMKKTRSSKPPEEMSRDELLKEVAYLRAETDYPKKTRCLDPGRAGGARRKAQAIQGLRQVHTLSLLLEAAELSRSTFYYQNHVLAHPDQDEAALCERIRAIYDQSKGRYGYRTVTLELANQGHRTNHKRVQRLMGEMGLKSRVRVKRYRSFKGAANVVVGNDLNRQFHAERPNQKWVTDVTEFKVQGMKLYLSPIMDLYNGEIVAYQIKRQPVFDLVGQMLEEAIKKLSPDERPMIHSDQGWQYQHENYRHMLEKHSLKQSMSRRGNCLDNAAMESFFGTLKSEFFYLNSFDNIESLEAGLVEYIQYYNQERIKLKLKGLSPVEYRERAQSAA
>NZ_CP049956.1|WP_033833007.1|3200532_3202137_-|membrane-protein
MSAPASAAPRRWFVAGDFNGFFGLVVDNLSILGFIAMALVGIFQFPADVVFGRMFPGTAFGVLVGNLLYTLMARRLAARTGRDDVTAMPLGLDAPTSIGMALLVLGPAFLAFKQQGMDPHAAGIATWQLGMAALVIMGVLKFVLSFFGEAVTRALPRAALLGSIAGIALVLMGLLPLLETLRSPLVGFTTLGLLLYVLIAKGKLPVRGPGVLLAFVFGTVLYYGLGLAGLGAPGFHVPEWVPPQVVLPLPTLGFLDGLPTAMTYLPLLLPFGLLMVVGGINVSESARAAGDDYRTRDILLVEAVATLVAGVCGGVAQTTPYIGQPAYKHMGARSGYTLLTGLFVGIGGMLGIISGLVQWLPLAVLAPIIVYVAIDITTQAFQATPRHHTGAMVFGFLPSVAYLLAIKAPGWIAPDQLPQLLTKLDGHGLPELAVIFTLGNGFIITSMLWISAVAAMVDGRLRRACGFLLVAAVLTLFGLIHSVDPRGGIYLPWELDGLARIISWQFAGAYVALALLLGLLSLQKQPVQPLGENN
>NZ_CP049956.1|WP_099524750.1|3199742_3200453_+|glutathione-S-transferase
MQYALYYWTGIQGRGEFVRLALEDAGVDYIDMARVHGDAVMQPFLDGGSEGAQPFAPPFLKAGRQVIAQVAAILDFLGPTLDLVPQAASRRVQALQLQLTIADLVAEVHDTHHPIAASKYYEEQKTEAKARAASLRSERLPKFLGYFEQVLAANGGRHALREHSYVDLSLFQLLSGLDYMFPRRMQALAPTLPLLRALQERVAKRPNIAAYLASERRLPFNTNGIFRHYPELDAER
>NZ_CP049956.1|WP_111118271.1|3198750_3199572_-|DUF3014-domain-containing-protein
MQSGKAVWPWVLGVVVIGGAGGWLFRDQLKRLADGVSVPVQSTPASTSAPPQPQAAAEPAPAPPAIKHPLDTEAAADPALPKLADSDTAAWGALTQLFQGEGPLTLLLRDHLIQRLVTQVDNLDKPSVPPTALAARPLPGNLQVEPGEGGERIAASNAARYAPYVQAFTALDPAATATAYKRFYPLIQQAYVDLGRPDGYFNDRLVAVIDHLLDTPELAQSPVVQRDERGRYRFVDPTLQSRSIGQKALLRMDAAQARAVKQQLRAIRSAITR
>NZ_CP049956.1|WP_012481080.1|3195983_3198569_-|ATP-dependent-chaperone-ClpB
MRMDKLTSRFQQALADAQSLAVGRDNSIIEPVHLFSALLDQQGGSTRPLLAQAGVNVPVLRERLTEALDALPKVSGQAGNVSMGNDLGRLLNQTDKLAQQHGDAFIASEWFVLAALDDGGTLGMALRAAGADKTRLQAAIDKLRGGENVQSENAEEQRQALEKYTIDLTARAESGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINDEVPEGLRGKRVLSLDMGALIAGAKFRGEFEERLKGVLNDLAKNEGQIILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCIGATTLDEYRKYIEKDAALERRFQKVFVGEPSVEDTIAILRGLKEKYAVHHGVEITDPAIVAAATLSNRYITDRQLPDKAIDLMDEAASRLRMEIDSKPEELDRLERRVIQLKIQREMLKKEKDEASRQRLADLENDIDGLEREFSDLNEIWKSEKAALQGATKIKEQVEQAKLELEAAQRRQDFAKMSEIQYGLLPQLEKQLAAAQEAEHKDFKLVQDRVTDEEIAEVVSRWTGIPVNKMLEGERDKLLRMEEVLHNRVVGQEEAIKVVSDAVRRSRAGLSDPNRPAGSFLFLGPTGVGKTELCKSLAEFLFDSADAMIRIDMSEFMEKHSVARLIGAPPGYVGYEEGGYLTEAVRRRPYSLILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVIVMTSNLGSHQIQDMSADDSPEAYTQMKAAVMGVVQAHFRPEFINRLDDIVVFHPLDKQQIKQIARIQMRGLEKRLAERGLKLAVSDAAFDLLGNVGFDPVYGARPLKRAIQSQLENPLAQQILSGAFVNGDTIEVGNDGGRLVFAKA
>NZ_CP049956.1|WP_005414289.1|3195110_3195911_+|MipA/OmpV-family-protein
MSQLRRSPALLCLALLPLFAAPIAHAKDDHWTFEVAAGGGVAPRYSGSEEYRATPSLSFDVTSPGGWFLGTSGIGWGTSIGEHTRVRAYVGASGIRKEKDSLLGGSDFLRGMGDIDTRPLVGISAGYTLGEAVLSGSWQFTRKDEDKAENGLATQQIHLNLSMPLFDLAGGVVSGSVSTDYGNRGYMQTWYGVSPEQAARTGFAEHKPKAGLVSAGVGLKWSHRVGRNGNWYISAEGTRLLGDAADSPIVQKANQFGLMSGYTHRF
>NZ_CP049956.1|WP_005410783.1|3210413_3211172_+|trehalose-phosphatase
MAEPLPLRPPPPLLDDACALFLDVDGTLIEFAARPDAVQLLPDVREAIGRISDRLEGAVALVSGRPLEQLDQLFAPLQLPAAGLHGHELRGEDGRVLRDEHDDDTAEWLHALHQQAMRFAHGHPGVLVEDKGVGLALHWRGAPHAASDVRAFADRHVRGRTSYRLQPGDHVVEFVPVGTDKGRAVRRMMQYLPFRGRLPVFLGDDLTDEFGFDAANGQHGWSVLVGEREPSAAVFALPDIRSVHAWLRENAY
>NZ_CP049956.1|WP_005410784.1|3211213_3212995_+|glycoside-hydrolase-family-15-protein
MTQPDLDLGVVGNGSFGALVDKHARVVWSCLPTFDGDPTFCALLGPNQQTGGDFAIELEDFASSEQEYLTNTAILRTVLRDTQGGALEILDFAPRWRQNDRFYRPVSLIRQVRPLAGSPRITVRARPLADWGARVPESTWGSNHVRWILPEHVLRLTTDVPVRFVRDGLPFVLNHPIHLILGVDESLNRSISGYVQEAFQRTRDYWREWVRYLSIPLEWQDAVIRSAITLKLCQYEDSGAIIAAMTTSIPEAPGSVRNWDYRYCWLRDAAFVVRALNRLGATRTMEQFLGYIFNLATTDGTLQPLYGIGFEAKLDEDEVPSLSGYRGMGPVRRGNLAWVQRQHDVYGSVVLASTQLFFDRRLQDPGDAHTFARLEPLGEQAFALHDVPDAGLWEFRGRTEVHTYTSAMCWAACDRLCKIAVRLKRDDRAHYWRERADTIHARIMAESWNEELGHFTDTFGGHRLDASLLLLADIGFIDALDARFIATVDAIGRDLKHGNSLYRYVAPDDFGEPETSFTICTFWYIDALAAIGRMDEAREMFELLLKQRNHLGLLSEDLAFDSGEAWGNFPQTYSHVGLITAAMRLSRSWQEAS
>NZ_CP049956.1|WP_005410785.1|3212991_3214356_+|alpha,alpha-trehalose-phosphate-synthase-(UDP-forming)
MSRLVVVSNRVAVPGENRAGGLAVGLLAALKERGGLWFGWSGKTVKEGSGTLHRQKDGDIDYVTMDLSKREVDGYYNGFANRTLWPLLHFRLDLVDYDRGTRETYHKVNALFADKLAPLLREDDIVWIHDYHLIPLGALLRERGIGCRIGFFLHIPMPSADLLQAMPDHLRLFSALYAYDLVGFQTQRDADRFQTYLRLFGGGRVLDNGELEAPGGRRFRAAAFPIGIDTELIARQAGTAATKAAVKNLRASLRDRQLAIGVDRLDYSKGLPERFLGFERYLERHPDQRGSLTYLQIAPVSRGDVTEYRQLRSQLEQIAGHINGGHAEPDWTPLRYVNQNFTHATLTGFYRAAAVGLVTPLRDGMNLVAKEYVASQDPEDPGVLVLSLLAGAADELKQALLVNPHDLDGVADAIATAATMSLSRRKERWHAMMDHLRTYDINHWRRSYLDALEG
>NZ_CP049956.1|WP_049452819.1|3214428_3214866_-|thiol-disulfide-oxidoreductase-DCC-family-protein
MKVGSNRSEAAAEAGSAVIVFDGVCALCNRWVRFLLRFDRAGRYRFAAMQGQQGSAMLRAHGLDPQDPTSFLLLDAQGPWTDTDAILRVLTGLGSAWRLIGVLRAVPRGWRDAAYRALARNRYRWFGRHDACHLPAPEQAARFLD
>NZ_CP049956.1|WP_049452820.1|3214840_3215365_-|DUF4166-domain-containing-protein
MPLFARVLGPAFATLAAPVQALHAAPLPCRYVGQARIVRGRHWLVPLLAALARLPKDGGALPTEVAFSAHGQGEQWARRFGRWPMVSRLWAHEGCLREQLGAVRFEFDLQAREGGIDWSVRRVWAFGLLPLPRRWFGGVRCREAWQGERYTFLVDVTLPWAGALIRYEGWLEPQ
>NZ_CP049956.1|WP_099485279.1|3215367_3216138_-|peptidoglycan-editing-factor-PgeF
MAAVLPVLQADWPAPPGVHALTTRRHGAGISPAPFAQFNLGNRHAAEGDTPANVEHNRRLLQQGLGLPSTPHWLRQVHSSTVLRFTAPPVPGASEPVADAAVTSVPGVVLAILTADCLPVVFAAADGSEVGAAHAGWRGLADGMLEATVAAMQTPPAQLRAWLGPAAGPADYEIGEEVYHAFVGHDPAADAAFVATRAGHWKVDLFALARQRLQAAGMDPAQVHGGTVSTMADPDLYSHRRDRRTGRMATLAWIAP
>NZ_CP049956.1|WP_165710914.1|3216137_3217127_-|23S-rRNA-pseudouridine(1911/1915/1917)-synthase-RluD
MSEQPSESARQAIVPDTAAGRRFDAVVAELFPEYSRSRLTEWIKAGEVLLDGAQVRPRDPLRGGEVVTLNVVLETQTDAQPEDIPLDVLFEDEHLLVINKPVGLVVHPGAGNHSGTLVNALLFRDPSVAVLPRAGIVHRLDKDTSGVMMVAKTLEAQTALVEQLAARDVHRQYLAIVMGALVAGGTADAPIDRHPRDRLKMAVREDGKEAITHYRLRERFRAHTALECRLETGRTHQIRVHMAHVRHPIIGDPLYGGALKLPKGASDELVAALRGFKRQALHAETLEFTHPITGEPVRNTAPVPEDMLHLMKVLREDSEAFAARERDRW
>NZ_CP049956.1|WP_024956778.1|3217240_3218128_+|outer-membrane-protein-assembly-factor-BamD
MIRRSSMLSAPVRLTALLLVLVIAATGCHRGAKKGDRPDEGTPVEQLYEKSHKLMQGGNWSGAETSFRRLVAQYPYGPYTEQAMIETAYAQYKAGKHDDAVSSIDRFIRTYPTHRNIAYLYYLRGLANSNRSTVFLRRVWSLDASRRDLSTPHQAYSDFNIVVDRYPNSRYAADARQRMLELRDVFAQHELDNALYYMRRGAWVSAAGRANYLLETYPQSAFQYDAVAVLADSYTHLGNKTLADDARRVLQLNQPDHPWLEGKWPKYPWMIRKLNPFAGEKSASTGQRNARLEKK
>NZ_CP049956.1|WP_099562842.1|3218318_3219521_+|lipase
MTPPPRRFRPLACLLATALLALSSGPVAAAPPAPGDLLSAAPYRASWVPSKAAQAYKLHYRTPDHRGQLAEGTGLLYLPAGAAPAGGWPVVSWAHGTQGIADRCAPSVSGPYQPERDGRFLDQFLAQGYAVVAADYQGLGSPGDHAYLHVRTAARNAIDLVKASRQYLGTATLSPRWVSVGHSQGGAAALTAGHLAPTYAGPSLHYRGSFTTGTPTAVELTALVMKPDNRTANPGALNAYHAYLLDGLLQVAPQIDRVLSDTGRTRVAVAREQCLGELATTLDGADTGSMFTAPLTSVPGIWAVLYDYLGVPRRGFSQPLMLGHGSEDRDVPYLTTLLYAAGLALRGEPVAFRRYPVDHRGTLDAAAADGLAFVRARLGDGHFNDAAETADLEQLLDDAR
>NZ_CP049956.1|WP_012481095.1|3219939_3221574_-|NAD+-synthase
MASIRIAMAQFDFPVGDVAGNTERIIEMIGQARDEYGAELVMFPELAVSGYPPEDLLLRPGFLYECEQAMARIATACRGITAVVGWPQAAGAVVYNAASVLRDGLVEQTYRKRELPNYAVFDERRYFDVDPDGGSCVFEVNGIPVGLLICEDLWFAEPLADTVRAGAQLVVVPNASPYERGKHAQRDAVLAARTRESGAAIAYLNVVGGQDALVFDGASVVADGDGTVHPAAAAFVDQWLLVEYDGQTRRFMPHVWMDDGDESMDALAWRAVTRGIQDYCRKNGFKKVWLGLSGGIDSALVLALAVDALGAENVTAVRLPSRYTAGMSNDLAAEQCQALGVKLEAVSIEPAFKGLMESLAPMFEGTAPDVTEENLQSRSRGVILMALANKFGGLLLTTGNKSEYAVGYATIYGDMCGGYAPLKDLYKTEVFGLSKWRNTVGGAPVIPPAVISRPPSAELRENQLDQDSLPAYDVLDGILYRYIDQEQSRTEIVAAGYDAAVVDRVLRLVRISEWKRHQAAPGPKVSRRAFGRERRYPISNGYKG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP049956_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049956_6

3332728-3332840

Orphan

Consensus_repeat	Method
GCGTGCCAACCAAGGTTGGCACCTACCGAAGGCGGGTGCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP049956_6

>merge|NZ_CP049956|6|3332728-3332840|CRISPRCasFinder
GCGTGCCAACCAAGGTTGGCACCTACCGAAGGCGGGTGCGGCGGTAGATCCGCGCCATGCGTGGATGGGAAAGCGTGCCAACCAAGGTTGGCACCTACCGAAGGCGGTTGCGG

>NZ_CP049956|6|5|3332728-3332840|CRISPRCasFinder
GCGTGCCAACCAAGGTTGGCACCTACCGAAGGCGGGTGCGG	CGGTAGATCCGCGCCATGCGTGGATGGGAAA
GCGTGCCAACCAAGGTTGGCACCTACCGAAGGCGGTTGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049956.1\|WP_005410875.1\|3338326_3338713_-\|RidA-family-protein	unknown	unknown	gnl\|CDD\|129116
NZ_CP049956.1\|WP_076739778.1\|3327719_3330449_-\|usher-protein	unknown	unknown	gnl\|CDD\|185210
NZ_CP049956.1\|WP_012481150.1\|3331525_3332614_-\|membrane-protein	unknown	unknown	gnl\|CDD\|236090
NZ_CP049956.1\|WP_138464127.1\|3342530_3345599_+\|formate-dehydrogenase-N-subunit-alpha	unknown	unknown	gnl\|CDD\|273689
NZ_CP049956.1\|WP_005410871.1\|3334553_3334796_-\|type-B-50S-ribosomal-protein-L31	unknown	unknown	gnl\|CDD\|234969
NZ_CP049956.1\|WP_043034091.1\|3325859_3326567_-\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|237939
NZ_CP049956.1\|WP_005410876.1\|3338895_3341058_-\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|223394
NZ_CP049956.1\|WP_005410877.1\|3341163_3341463_-\|DNA-directed-RNA-polymerase-subunit-omega	unknown	unknown	gnl\|CDD\|234744
NZ_CP049956.1\|WP_005410872.1\|3334884_3335823_-\|inosine-uridine-preferring-nucleoside-hydrolase	unknown	unknown	gnl\|CDD\|239115
NZ_CP049956.1\|WP_005410860.1\|3315865_3316924_-\|pilus-assembly-protein-PilM	unknown	unknown	gnl\|CDD\|378558
NZ_CP049956.1\|WP_076739779.1\|3330508_3331006_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|367947
NZ_CP049956.1\|WP_005414359.1\|3341573_3342239_-\|guanylate-kinase	unknown	unknown	gnl\|CDD\|234719
NZ_CP049956.1\|WP_099472645.1\|3317143_3319567_+\|penicillin-binding-protein-1A	unknown	unknown	gnl\|CDD\|227342
NZ_CP049956.1\|WP_005410870.1\|3332979_3334257_-\|citrate-synthase	unknown	unknown	gnl\|CDD\|180164
NZ_CP049956.1\|WP_076739777.1\|3326583_3327723_-\|pilin-protein	unknown	unknown	gnl\|CDD\|284778
NZ_CP049956.1\|WP_111118229.1\|3321411_3325791_-\|autotransporter	unknown	unknown	gnl\|CDD\|240612
NZ_CP049956.1\|WP_076739916.1\|3336207_3338319_-\|ATP-dependent-DNA-helicase-RecG	unknown	unknown	gnl\|CDD\|236794
NZ_CP049956.1\|WP_005410881.1\|3345609_3346527_+\|formate-dehydrogenase-subunit-beta	unknown	unknown	gnl\|CDD\|273705
NZ_CP049956.1\|WP_060380571.1\|3319777_3320422_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049956.1\|WP_060380572.1\|3320598_3321342_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP049956.1\|WP_005410875.1\|3338326_3338713_-\|RidA-family-protein	gnl\|CDD\|129116	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase. This protein was described initially as an inhibitor of protein synthesis intiation, then as an endoribonuclease active on single-stranded mRNA, endoribonuclease L-PSP. Members of this family, conserved in all domains of life and often with several members per bacterial genome, appear to catalyze a reaction that minimizes toxic by-products from reactions catalyzed by pyridoxal phosphate-dependent enzymes. [Cellular processes, Other].	1.07399e-58
NZ_CP049956.1\|WP_076739778.1\|3327719_3330449_-\|usher-protein	gnl\|CDD\|185210	PRK15310, PRK15310, fimbrial outer membrane usher protein TcfC; Provisional.	1.37631e-178
NZ_CP049956.1\|WP_012481150.1\|3331525_3332614_-\|membrane-protein	gnl\|CDD\|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	5.57878e-06
NZ_CP049956.1\|WP_138464127.1\|3342530_3345599_+\|formate-dehydrogenase-N-subunit-alpha	gnl\|CDD\|273689	TIGR01553, Formate_dehydrogenase_major_subunit, formate dehydrogenase-N alpha subunit. This model describes a subset of formate dehydrogenase alpha chains found mainly in proteobacteria but also in Aquifex. The alpha chain contains domains for molybdopterin dinucleotide binding and molybdopterin oxidoreductase (pfam01568 and pfam00384, respectively). The holo-enzyme also contains beta and gamma subunits of 32 and 20 kDa. The enzyme catalyzes the oxidation of formate (produced from pyruvate during anaerobic growth) to carbon dioxide with the concomitant release of two electrons and two protons. The electrons are utilized mainly in the nitrate respiration by nitrate reductase. In E. coli and Salmonella, there are two forms of the formate dehydrogenase, one induced by nitrate which is strictly anaerobic (fdn), and one incuced during the transition from aerobic to anaerobic growth (fdo). This subunit is one of only three proteins in E. coli which contain selenocysteine. This model is well-defined, with a large, unpopulated trusted/noise gap. [Energy metabolism, Anaerobic, Energy metabolism, Electron transport].	0
NZ_CP049956.1\|WP_005410871.1\|3334553_3334796_-\|type-B-50S-ribosomal-protein-L31	gnl\|CDD\|234969	PRK01678, rpmE2, type B 50S ribosomal protein L31.	3.97798e-51
NZ_CP049956.1\|WP_043034091.1\|3325859_3326567_-\|pilus-assembly-protein	gnl\|CDD\|237939	PRK15308, PRK15308, fimbrial protein TcfA.	1.62799e-49
NZ_CP049956.1\|WP_005410877.1\|3341163_3341463_-\|DNA-directed-RNA-polymerase-subunit-omega	gnl\|CDD\|234744	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed.	1.39874e-21
NZ_CP049956.1\|WP_005410872.1\|3334884_3335823_-\|inosine-uridine-preferring-nucleoside-hydrolase	gnl\|CDD\|239115	cd02649, nuc_hydro_CeIAG, nuc_hydro_CeIAG: Nucleoside hydrolases similar to the inosine-adenosine-guanosine-preferring nucleoside hydrolase from Caenorhabditis elegans. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains eukaryotic, bacterial and archeal proteins similar to the purine-preferring nucleoside hydrolase (IAG-NH) from C. elegans and the salivary purine nucleosidase from Aedes aegypti. C. elegans IAG-NH exhibits a high affinity for the substrate analogue p-nitrophenylriboside (p-NPR). .	1.64895e-119
NZ_CP049956.1\|WP_005410860.1\|3315865_3316924_-\|pilus-assembly-protein-PilM	gnl\|CDD\|378558	pfam11104, PilM_2, Type IV pilus assembly protein PilM;. The type IV pilus assembly protein PilM is required for competency and pilus biogenesis. It binds to PilN and ATP.	8.46083e-170
NZ_CP049956.1\|WP_076739779.1\|3330508_3331006_-\|fimbrial-protein	gnl\|CDD\|367947	pfam04449, Fimbrial_CS1, CS1 type fimbrial major subunit. Fimbriae, also known as pili, form filaments radiating from the surface of the bacterium to a length of 0.5-1.5 micrometres. They enable the cell to colonise host epithelia. This family constitutes the major subunits of CS1 like pili, including CS2 and CFA1 from Escherichia coli, and also the Cable type II pilin major subunit from Burkholderia cepacia. The major subunit of CS1 pili is called CooA. Periplasmic CooA is mostly complexed with the assembly protein CooB. In addition, a small pool of CooA multimers, and CooA-CooD complexes exists, but the functional significance is unknown. A member of this family has also been identified in Salmonella typhi and Salmonella enterica.	2.87921e-27
NZ_CP049956.1\|WP_005414359.1\|3341573_3342239_-\|guanylate-kinase	gnl\|CDD\|234719	PRK00300, gmk, guanylate kinase; Provisional.	2.7169e-120
NZ_CP049956.1\|WP_099472645.1\|3317143_3319567_+\|penicillin-binding-protein-1A	gnl\|CDD\|227342	COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane].	0
NZ_CP049956.1\|WP_005410870.1\|3332979_3334257_-\|citrate-synthase	gnl\|CDD\|180164	PRK05614, gltA, citrate synthase.	0
NZ_CP049956.1\|WP_076739777.1\|3326583_3327723_-\|pilin-protein	gnl\|CDD\|284778	pfam07434, CblD, CblD like pilus biogenesis initiator. This family consists of several minor pilin proteins including CblD from Burkholderia cepacia which is known to CblD be the initiator of pilus biogenesis. The family also contains a variety of Enterobacterial minor pilin proteins.	9.95855e-52
NZ_CP049956.1\|WP_111118229.1\|3321411_3325791_-\|autotransporter	gnl\|CDD\|240612	cd12820, LbR_YadA-like, YadA-like, left-handed beta-roll. This group contains the collagen-binding domain virulence factor YadA an adhesion proteins of several Yersinia species, and related cell surface proteins, including Moraxella catarrhalis UspA-like proteins. The collagen-binding portion is found in the hydrophobic N-terminal region. YadA forms a matrix on the bacterial outer membrane, which mediates binding to collagen and epithelial cells. YadA inhibits the complement-activating pathway with the coating of the cell surface with factor H, which impedes C3b molecules. These domains form a left handed beta roll made up of a series of short repeated elements. UspA1 and UspA2 are part of a class of pathogenicity factors that act as cell surface adhesion molecules, in which N-terminal head and neck domains extend from the bacterial outer membrane. The UspA1 head domain of Moraxella catarrhalis, is formed from trimeric left-handed parallel beta-helices of 14-16 amino acid repeats. The UspA1 head domain connects to a neck region of large extended, charged loops that maybe be ligand binding, which is in turn connected to an extended coiled coil domain that tethers the head and neck region to the cell surface via a transmembrane region.	7.09601e-18
NZ_CP049956.1\|WP_076739916.1\|3336207_3338319_-\|ATP-dependent-DNA-helicase-RecG	gnl\|CDD\|236794	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.	0
NZ_CP049956.1\|WP_005410881.1\|3345609_3346527_+\|formate-dehydrogenase-subunit-beta	gnl\|CDD\|273705	TIGR01582, Formate_dehydrogenase_iron-sulfur_subunit, formate dehydrogenase, beta subunit, Fe-S containing. This model represents the beta subunit of the gamma-proteobacterial formate dehydrogenase. This subunit contains four 4Fe-4S clusters and is involved in transmitting electrons from the alpha subunit (TIGR01553) at the periplasmic space to the gamma subunit which spans the cytoplasmic membrane. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well. [Energy metabolism, Anaerobic, Energy metabolism, Electron transport].	7.07461e-156
NZ_CP049956.1\|WP_005410876.1\|3338895_3341058_-\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	gnl\|CDD\|223394	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription].	0

>NZ_CP049956.1|WP_012481150.1|3331525_3332614_-|membrane-protein
MSTRFDPPERGPLGPDVAAVVTAPIVAPPSESAVSWGAIFAGATAAAALSLILLILGVGLGLSSVSPWSFEGVSKETFGWSSIIWLTFTALAASGLGGYLAGRLRTKWTQIHGDETYFRDTAHGFVSWAVATLLTAGLLTSAIGGVLGAGAKVAGAAAGVAASTAGVAAAGAGSTAAAAPEGDLNYWVDSLFRNATDAGPAAAGAPPAPGAPDAASGVAATDPAPPPPAASVGPRDVRVGLPPRPMPGNGPMGDRREVRAEVNRIIVNSLQGDGLDPADTQYLAQLIARETGMSPAEAQARVTDVQTRMRAALEKARNTAKQAADDARKATAYAALWLFITLLIGAFFASLSATWGGRRRDL
>NZ_CP049956.1|WP_076739779.1|3330508_3331006_-|fimbrial-protein
MHAIIKKAALAAALATASLSAHAVETKISVYADVDPTLALLRDDGTPLPDTVQMTHDPLRGLLPSTQQVRIHSNDIDKDIEVRLGHDPVLLNGATRVPLAVSLNTDALTTAVTEFKAADLFNGASSTPGASISMPLTIAQAGAGGPLTVNGRYEGMVYIIMNQKP
>NZ_CP049956.1|WP_076739778.1|3327719_3330449_-|usher-protein
MTPHAPAVTRLAVALALAMAAPLVAAHGVPAGFEDLVEGQTEQLDIQLFGRSAGLSPVRVTLEHVQLEDPARVLQALDLPAEAQAALLPTLSQPLPRNSHLACRFGGATAGCGYLDPPEDPTAARALYDEGEGAVRLFVARQWIPGEPAAERYHTVTANAENAFLHQQTLNVSGGRDYQALSARGMGTLGLFDRGHLSADWYYTQQRYRSRGSNDDFQFDNVYYRHDLGKAHYLQAGRMDRRNLSSPQGGTFSFSMLPLDRFQGARLGTTQAYVDTDAAVQASPLTVLLARDARVDVFDGERLLQTFYLQAGINQIDTRNFPFGNYLVRMRIYEDGVLVRTEEAPFDKGGDWTNSQWQWFVQGGHRSERRSDAFDGERIAMAGVRVPLGRDAAMTAGAATFGGHRYGELRLDLRRVMATQEVRATFSGMRGSDGSNGQQHQLSYRRTASWNLYQQRMRGKACQFEAEARDQLGCTNALSGSMSLPLAGGNVYVGYTRRQTWRTGWHRPEFEQDPLFGLEPLLPPGPLEPRREPLLSRTWQASFSRSHRWQDFSVSTRVGVWRQNSTDSVRGSTERDRGIYVNLSLGRRHRSAAGDGQRRYAVDVRQPQHQRPAIDYSVGQSLRQELDTQYRELSGELRANNNERYSASLGGQLQNGIGHTSASVARYQQRGRSETGYSGAHNSGFALGRRGFYWSGANGADAGLAVQVADTDDADLRGVAAELQVGGLRRQRLQIGERRLLPLPAYQSQRAEVQDASTLDSIAAIRVTGVGGARPMFLTPGKLMRMPVPIEVTYTFIGHARDLAGAPLGGARILNAPVPGTSANGGFVADFPRRETTLYLLQDDRLLHCPLQVRERRQVVLLVGAVHCEPLAVAQLPAEIRQQARVTRLLQERALIAATPRTAAAGGTP
>NZ_CP049956.1|WP_076739777.1|3326583_3327723_-|pilin-protein
MNRRWMFVLMLVCALVLVMPRAWAQWPPETHPADQSRDIVMSWDRSAVPGDVELWAPRTVLGFSHDLALKYGQIHVVCESASDSEFGRCPTEGSLTQVPGVTEIGLELVEERTGLRAEIRVLGYLQRAMSGRACGLDFWEDIGTRRMLHAASWFICTVDQPLGTGAKLDIPASEIAKLVAGHWKATMRLNIKADPAAAPVATATFNFDFTVTDYDAISIYFPTFDTVAPLVNLDLRYDPIQKVVGGRKQLDMCLYDGLGSQSEYLDVTVRDSGPRPPAGSDFSLWHRDGGSDASQRLDYRVHLDYGGHRLAMKHNVKQQLRGIDSAQLRLVMLPGISQPVYCVPTPLTLETPPTPIASQRPGLYEGELTVVLDVPTAKP
>NZ_CP049956.1|WP_043034091.1|3325859_3326567_-|pilus-assembly-protein
MKKLLFCLLPVSALLALPAYANLSIHPMRAAVDAKRGTHIRVYSQSTIPQYVQTRLRRIVNPATPAEEEQEMEASDAAIAITPGKFALSGGGNRLIRVIPLQQVQKETAYRLYFEGVRGPDDAPLEDGEGAQANIGVSLVWGALVNVTPDDGVVDLRLQDNTLHNTGTLRVGIIGAEECTAAGTCTPHPVSHSLYPDAALTLPFQLQPGNSLQLRYRLTRDGYREHVRTIEPTAT
>NZ_CP049956.1|WP_111118229.1|3321411_3325791_-|autotransporter
MNRIYRRIWNHAKGCWEVASELTRPCGRKSSRATGAGGLLMVALLLAGGDAHAKTRYYIGCDPFNLGNGEFVSCSPIAGRYDDTMFVGYALTNGLNSLGYGAGVNMKGDNTTAFGIGARINGQNSAAFGFKASTYAVDSVAVGYNARTTADGGHNVAVGANAYAAYIGATALGNKAEARAANAIALGSGSSSRGVDALALGANSSTSAAGSMAVGAKASASRTNAIALGLSSVAQQEDAVALGASTIANGAGGVALGAKAMVDTGAGTGGVAIGGGARAGSLGYTGAIAIGGDTRAYIDGVALGYAASVSAQGAVALGVRSVATEANTVSVGSASVRRRIVNVADGRVTASSTDAVTGKQLHAMNERVDGMIKQDSAGGIVRIANSNTGSEVSMRNAVLATRKVSGVSDGALTTTSTDAVNGRQLNTTNGNVTKAQTAADAAKADASKALAQVTTVTGLIGQTSSTSSVRLGEKNSGTSLDVRNSANANRKVTGVADATLSTSSTEAVTGRQLNTTNENVAKAQTAAGEAKADASKALTQVVTLGGLVGQVSATGNVRLGEKNSGTVLDVRNSANASRKLTGVADGTLSTSSAEAVTGRQLNTTNENVAKAQAAADTAKVEAGKALAQAVTLGGLVGQVSATGNVRLGEENSGTLLDVRNNKNENRRINGVSDGDLSAGSSDGVSGRQLFATNVRLGALESAGKYISVGVDAFSRDAVAGQAGVAIGDSAKAGAEGATAVGAFSTSLGRNGVAIGRASLVAGGAANGFAMGAGSNVHANNGVAIGSGAKVAATADESLALGAGSEATEAGTASFGASGVGRRLVNVSRGTADHNAITVSQLKDALVTLGAGAGMDASGNIIAPTYSVQAGTQNTVEDALMALDGAVITAGRRADKVEDQLSSIFQDSPSARADGMNQIALSGANGMVLTNLADGRVAPGSRDAVTGSQLYAAEQKISQNRNDLEAMRKERETGQQAMRGLDASGPIDFGGARLTGVAEAKLSADSSDVVRGSQLYGTNSRVSELEDVAQSVSIGSAPFSERAEAGVAGVALGNSAKTGLEGGTAVGTFAGAMGKNSTAIGRAATVSVDSANGFAMGVGAQVGGDAGGANEGVAIGAGARVGSGAHGSLALGNGSQADEEGVASFGGVGIKRRLVNIANGTANHNAATVGQLRGALSALGGEVDANGNIVGPSFTVQGQSQSTLNGALEALDGAVVSNRSRVNQVESQLRSVFQDTPSVRADGLNQLTLAGTHGMVISNVANGLIAAGSRDAVNGGQLHSMQQQLNGRMDGLEQRIDAPQSQAMAVASVPEPEAPVPQAEGGQQVASVGEGEKPAPQPKTKEDTPKPQVDTAELEKMLARANEYTDGAISTFERRLDKMDKRFNRMAAMSSAQTAMAMNTAGLATYNRLGAGVGYSEGESAMAVGYQRVLNEKGSATFSLNGAFTNSGERSMGVGVGIGW
>NZ_CP049956.1|WP_060380572.1|3320598_3321342_-|hypothetical-protein
MYRWVSGIVSYRTFYIWRARFRYYTRNLDLWTLMSGLCIAGLLLVLWYLWQMLGVPPPRVHPQAAALRIEGVTSEAIHRIVLVRHAGRTPGAPFTTPEEVRASTLRTMRVRQVMDSEVVWRLKADMLADIADYITATGGCVPYDCRRIRARLEDVRRAGVENAQINTALLTILEVSLDQMPSLEAVEHERVKSGWSDGFNDIYDQIWLLRGLQVMHAQMMREYPQRAPVPWLPRLLSDPLRDTRFVW
>NZ_CP049956.1|WP_060380571.1|3319777_3320422_+|hypothetical-protein
MHRARQHAASQTRERRHRLAHEAARLMAEGGIRDYHQAKLKAASRLGIHDDASLPRNTEIEDALREYQRLFAGPQHGSELQRRREAAMRALEFLHGFSPRLAGPVLEGTADANSPVQLHLHSDDPEAVHRFLDEHGIPAESRTRRLRMDRERCLDVPVWVFSAEELTFDLAVLPYDALRQAPLSPVDEKPMRRASVAQLRQVLAEAEISAYIGG
>NZ_CP049956.1|WP_099472645.1|3317143_3319567_+|penicillin-binding-protein-1A
MTRLRRWLRWIFLIVLVLALIGAAAVGGLYYAVSSKLPDVQTLRDVEMQEPMYVYAADGKLMAVFGETRRTPITMKDVPERLKQAFLATEDARFYEHGGVDYMGIGRAVWLLATTNDKRVPGGSTITQQVARQFFLSSEYSYTRKLAEILLARKIESELSKDEIFELYLNKSFFGNRAYGVAAAAEFYYGKKLNELDLDEMASLAGIPKFPSSGNPISNPERARQRRDNYVLQRMADLKFVSQAEADAAKAVPMHATAHEPPVQVDAPYVAELVRQEMIARFGGDVVNKGYHVTTTIDSTLQTAANQSVRDGLLLYDHRHGWHGVEKQVQVGAGEDAAALAEHLRGMYGQAGLLPAIVASTGADGSATVVLANRSEIVLPAGAAKWTNKTPGKLVQRGDIVRVRAGAKEGEWLLDQIPRGQSALVSLDAHSGALKALVGGFSFSGNKFNRATQARRQPGSSFKPFIYAAAFDKGYNPASIVLDAPVVFRDRRGKTWAPQNDGGGFRGPMRLREALVQSRNLVSVRLLDGMGVDYARKYISEFGFAESELPPNLSMSLGTASLTPLSVARGYAVFANGGSRVDTWLIDQVNDRDGNLVFKENPALACRDCAGSSDQPVNQVVDGFNFGAPAPKVDPAAAAKAEAKTETPAAPANPDARTAPRAIDARTAYQLVSMMRDVVQRGTGVQAKVLGREDVGGKTGSTNDHRDAWFSGFGGPYVTTVWVGRDDFRSLGYREYGGKAALPIWIDYMRTALKDTPIAQNEPPSGMVQATLNGATEWVKVEDMDRLTDYDLNLNTPQADAAAFDIF
>NZ_CP049956.1|WP_005410860.1|3315865_3316924_-|pilus-assembly-protein-PilM
MGLIPKSQSPLVGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAMNRSGSKAKLAAAAVAGSAVITKVIPMPAELDENDMEAQIELEAVNYIPYPIEEVNLDFEVIGAIPNNPEMVQVLLAASRSENVELRQSALELGGLQAKVMDVEAFAVENAYALVASELPVSIDGVVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEIMRRYGLSYEEAGLAKRQGGLPESYEMEVLEPFKEATVQQISRLLQFFYAGSEFNRVDHIVLAGGCAVLGGLPEMVEEQLGVPTVVANPLAQMTLGPKVNAHALAQDAPALMIATGLALRSFD
>NZ_CP049956.1|WP_005410870.1|3332979_3334257_-|citrate-synthase
MSDLDQVTLNAGDKSVVLPVIKPTLGNDCVDIAKLTKETGFFTYDSGFTATASCKSAITYIDGDKGVLLYRGYPIEQLSEKSSYVEVAYLLINGERPSAEQLKAFTDELTAEANVDESINTLIGSFAKDAHPMAILAAAIAQLSAIYHDSLDLSDAEQRRQAAVRLIAKVPTLSALIYRHGKGLPANKPDTSLDYVSRFLKQTFESADGQYDLNPDVVKALDLLFILHADHEQNASTSTVRLVGSTGANPYASVAAGVTALWGPAHGGANEAVLKMLEEIGSADNVESAVVKAKDKTSGFRLMGFGHRVYKNFDPRAKVIGEMTSKVLKQLGVQDPLLDVAVKLEQAALQDEYFVARKLYPNVDFYSGIIYKALQIPTEMFTVMFALGRTSGWVSHWLEQQVDPEMKIGRPRQVYTGSDVRDYQG
>NZ_CP049956.1|WP_005410871.1|3334553_3334796_-|type-B-50S-ribosomal-protein-L31
MKADIHPNYRDVVFHDVTSDFKILTRSTMATKETIQWEDGNEYPLVKVEISSASHPFYTGKHKVIDTSGRIDKFQKRYAR
>NZ_CP049956.1|WP_005410872.1|3334884_3335823_-|inosine-uridine-preferring-nucleoside-hydrolase
MTHKIPLLIDTDPGVDDALALLMAFADERHDVVALTIAAGNVGLQYTVRNALKLCDIVGRTDVPVFAGSPDPLLHPSVDAAHVHGRDGYGDVDLPPPSRQAEAEHAALAILRLSHEHAGELMLVMLGPLTNLALALKLDPTLPERIKRIVVMGGAVTCHGNITPAAEFNIAFDPEAAHVVFTSFKHLLVSDWEATVAHGLPLQDAEKWLQADSDRARFYELISRKTRGLSEDSKGGRWYTADAVAMAWALNPEGQLRVESRPLNVELNGTFSRGATIVDWNRQTGQPDNCDLLMAYDQQRFEALVRQALGAD
>NZ_CP049956.1|WP_076739916.1|3336207_3338319_-|ATP-dependent-DNA-helicase-RecG
MARKAAVTPVLSPSGEASLAMLAGVGPAVAAKLQARGLATLQDLWLHLPLRYEDRTRLTRIEDLRNGVPAQVEGRVVAVERGMRYRPMLKVAVEDEGRGTLVLRFFHFRQQQVGQFAVGNRLRCFGTPKPGQLGLEIVHPSYQVLGRNDDPELGDRLDPVYPTVEGVGPMTMRKLIGQALDRLPEESALELLPSGWLDGLGLPSLRSALLTVHRPPPDADLAALAAGTHPAQRRLAMEELLAHHLSLRRQRIALQAHHAPPLAGPGKLAKALLKQLPFALTGAQARVFKQIREDLARPSPMLRLVQGDVGSGKTVVAALAAMLAVEQGKQVALAAPTELLAEQHLNNLRGWLEPLGVRIAWLAGKVTGKARAKVMEQVASGEAQVVVGTHALMQEAVVFQDLALAIVDEQHRFGVHQRLALRDKGAGGNSVPHQLVMTATPIPRTLAMSEYADLDVSAIDELPPGRTPVQTVALNNDRRPELIERIALACQEGRQVYWVCTLIEESEELDATPAQATYESLQALLPGVRVGLVHGRLKAAEKLATMVAFKAGDIDLLVATTVIEVGVDVPNASLMVIENAERLGLAQLHQLRGRVGRGSAVSRCVLLYQAPLSQMARERLQTMRETNDGFVIAEKDLELRGPGELLGTRQTGLAGFRIADLARDAGLLPGVHDLAERLLDQQPTLADRVVQRWIGTAVRYASA
>NZ_CP049956.1|WP_005410875.1|3338326_3338713_-|RidA-family-protein
MSRQIINTEKAPAAIGPYSQAVRAGNTVYFSGQIPLDPATGDIVGAGDVEAQARRAFDNLKAVAEAAGGSLDKVVRLGLYLTDLGEFAKVNAVMQDYFQAPYPARSTIEVSGLPKGANFEVDAVMVID
>NZ_CP049956.1|WP_005410876.1|3338895_3341058_-|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase
MNPGPTAKVAAAPAAAVPDYVLQLERAAHYLPPEQLPLLRRAWEVGASAHAGQTRKSGEPYITHPVAVAQVLAELGLDVEALIAAILHDTIEDTPLTREALAAEFGEAVAELVDGVTKLDKLKFRDRQEAAAESFRKMLLAMSRDLRVIMIKLADRLHNMRTLGAQSREARGRIARETLEIYAPIAQRLGMSLVKSELQNLGFKALYPWRHAIIEKHIRSQPVVRREAMAQVEVQLSQRLAKEGIEHRLISRIKTPWSIYNKMRDENKSFDQVMDVFGFRLVVRSVPSCYHALGSVHATFKPLDGRFRDFIAIPKANGYQSLHTVLFGPYGSPIEVQIRTEEMDLIAERGVAAHWTYKFGGDSPNSAQSRAHAWIVELIDSQRAAGSSLEFLDNVKVDLFPDEVYLFTPKGKILALPRNSTALDFAYAVHTDVGNMAVASRVDKKLVPLRTKLVSGQSVEIITARSATPKPQWLEFVVTSKARTAIRHQLKQLEHEDAVQLGHRMLDRALEAMDSSLERLPKGRLDAFLAEHRFPRLEALLAEVALGNWMPTQAAQALMAYAELRGGPHSRHHSQEKILINGSERGVVTFAGCCQPIPGDEIMGYHTAGKGIVVHRMDCPNLAELRKSPERWVPIGWDTTVSGDYDTSLVVEVENGTGVLAQLAAAIAQSHSNIERVDYLDRDFNAAVLAFNIQVRDRNHLAEVMRRLRRLSVVQSVRRQ
>NZ_CP049956.1|WP_005410877.1|3341163_3341463_-|DNA-directed-RNA-polymerase-subunit-omega
MARITVEDCLEVVNNRFELVMMASKRARQLANGVQATLDNSETEDKPTVLALREIAARKIDNALIDEVEKAERERAEREALEWAAAEVVADEDMSKNDD
>NZ_CP049956.1|WP_005414359.1|3341573_3342239_-|guanylate-kinase
MSAASKPSDAVARGTLYIVAAPSGAGKSSIVNATLARDPQIALSISFTSRAMRPGEVNGQHYHFVSAERFEEMIAAGDFFEHAWVHGDWKGTARQSVEPQLAAGQDVLLEIDWQGAQQVRQLVPGTVTVFILPPSKQALQDRMRKRGQDSEAVIAQRLGAARDEMLHFNEFDYVIVNEVFDTAVDELCAIFTASRLRREAQKVRHAGLIQALLTPDPGATD
>NZ_CP049956.1|WP_138464127.1|3342530_3345599_+|formate-dehydrogenase-N-subunit-alpha
MPSMSRRQFLKVTGTTLVGSSLALMGFAPGIALAEVRQYKLTRATETRNTCTYCSVACGILMYSLGDGAKNAEPSIFHIEGDPDHPVNRGTLCPKGAGLADIIHSKSRLLYPEYRAPGSNEWKRLSWDDALDRIARLMKEDRDANFVQKNEAGQTVNRWLTTGMLAASATSNETAVLTHKVVRSLGMLAFDNQARVUHGPTVAGLAPTLGRGAMTNHWVDIKNADLILIMGGNAAEAHPCGFKWVTEAKAHNKARLIVVDPRFNRSAAVADVYAPIRTGTDIVFLGGLINYLLTEDRIQHEYVLNYTDMSFLVKDEFAFKDGLYSGYNEEKRSYDRSSWDYAYGDDGFVRSDPTLKDPRCVYNLLKQHYARYTVEMVERICGTPADSIRQIWDMIASTAGKDKAMTILYALGWTQHSIGAQNVRAGTMVQLLLGNIGVAGGGMNALRGHSNIQGLTDIGLMSDLLPGYLTLPKQDEQDYEAYIAKRTQKPLRANQMSFWQNYPKFHVSLMKSWWGDAATADNNWCFDYLPKLDKPYDMLQAYELMNEGKIHGYICQGFNPLASAPNKGKLISAFSKLKFMVSMDPLETETIAFWQNHGALNDVDPSTIQTEVFRLPTTSFAEENGAVVNSSRWLQWHWKGANPPGEARSDIEIMSELFHRIKAMYEKDGGAWWEPVRDLAWNYANPEVPTPEELAMEYNGKALADVFDPKDPTKLVRKAGEQLAAFGDLRDDGSTASGCWIYIGAWGPTGNMMARRDNSDPTGIGNTLGWAWAWPANRRVMYNRASCDVAGKPFDPRRTLLAWNGKNWGSVDVPDFKADEDPAGGMGPFIMNPEGIARFFAKAGMAEGPFPEHYEPFDTPLRSNPLSPGQALTLNNPAARVFASDRAQIGSPDEFPHVATTYRLTEHFHFWTKHGKLNAIIQPEQFVEIGAALADELGINNGSRVRVSSKRGHIEAVAMVTKRIKALQIDGRTVHQVGVPIHWGFLGAAKPGYIANTLTNAIGDGNSQTPESKCILVKVEKV
>NZ_CP049956.1|WP_005410881.1|3345609_3346527_+|formate-dehydrogenase-subunit-beta
MSLQSLDIIRRSATTTPSPEARGAHTGQVAKLIDVSKCIGCKACQVACMEWNDLRDEVGSCVGSYDNPPDLSDQSWTVMKFREYEDEKGKLEWLIRKEGCMHCSDPGCLKACPSPGAIIQYANGIVDFQEENCIGCGYCVTGCPFDVPRISKKDHKAYKCTLCSDRVAVGQEPACVKTCPTGAITFGSKQAMTEHAAGRVEDLKSRGYENAGLYDPQGVGGTHVMYVLQHVDKPELYADLPKDPRISPMVEVWKGVAKPLGVLAIAATAFAGFLHYIGIGRNTVNDEEEEEAEHEAKKIEEEQRP

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP049956_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049956_7

3523020-3523150

Orphan

Consensus_repeat	Method
CGACCAAGGTCGGCACCCACCAGAG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP049956_7

>merge|NZ_CP049956|7|3523020-3523150|CRISPRCasFinder
CGACCAAGGTCGGCACCTACCAGAGCAGGTCATGGCAGTGGAAAGCATCGTGCCGACCAAGGTCGGCACCCACCAGAGAGGATCATGGCGTCGATTGGCCCTGTGTCGACCAAGGTCGACACCCACCAGAG

>NZ_CP049956|7|6|3523020-3523150|CRISPRCasFinder
CGACCAAGGTCGGCACCTACCAGAG	CAGGTCATGGCAGTGGAAAGCATCGTGC
CGACCAAGGTCGGCACCCACCAGAG	AGGATCATGGCGTCGATTGGCCCTGTGT
CGACCAAGGTCGACACCCACCAGAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049956.1\|WP_049396468.1\|3526503_3527571_-\|DUF1624-domain-containing-protein	unknown	unknown	gnl\|CDD\|226749
NZ_CP049956.1\|WP_165710997.1\|3538975_3539368_-\|VanZ-family-protein	unknown	unknown	gnl\|CDD\|227939
NZ_CP049956.1\|WP_012481263.1\|3517904_3519125_+\|multifunctional-CCA-addition/repair-protein	unknown	unknown	gnl\|CDD\|182810
NZ_CP049956.1\|WP_005411048.1\|3533692_3536401_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|273804
NZ_CP049956.1\|WP_165710991.1\|3515105_3515516_-\|biopolymer-transporter-ExbD	unknown	unknown	gnl\|CDD\|223917
NZ_CP049956.1\|WP_005411035.1\|3519204_3519639_-\|SseB-family-protein	unknown	unknown	gnl\|CDD\|377787
NZ_CP049956.1\|WP_111193669.1\|3530861_3532151_-\|sugar-MFS-transporter	unknown	unknown	gnl\|CDD\|340952
NZ_CP049956.1\|WP_049460420.1\|3527570_3528719_-\|N-acetylglucosamine-6-phosphate-deacetylase	unknown	unknown	gnl\|CDD\|224733
NZ_CP049956.1\|WP_024957032.1\|3532529_3533549_+\|ROK-family-protein	unknown	unknown	gnl\|CDD\|237092
NZ_CP049956.1\|WP_065183236.1\|3520027_3521071_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367567
NZ_CP049956.1\|WP_065183188.1\|3519688_3520024_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049956.1\|WP_165710995.1\|3528718_3529747_-\|SIS-domain-containing-protein	unknown	unknown	gnl\|CDD\|225132
NZ_CP049956.1\|WP_165710994.1\|3523175_3526205_-\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|238654
NZ_CP049956.1\|WP_012481259.1\|3511972_3514834_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP049956.1\|WP_065183189.1\|3521120_3522155_-\|peptidase	unknown	unknown	gnl\|CDD\|367567
NZ_CP049956.1\|WP_165710989.1\|3510665_3511847_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049956.1\|WP_165710996.1\|3536512_3538870_+\|family-20-glycosylhydrolase	unknown	unknown	gnl\|CDD\|119333
NZ_CP049956.1\|WP_165710993.1\|3515712_3517698_+\|transglycosylase-SLT-domain-containing-protein	unknown	unknown	gnl\|CDD\|183236
NZ_CP049956.1\|WP_065183190.1\|3522531_3522966_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049956.1\|WP_005411045.1\|3529754_3530822_-\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380487

Protein	Function_ID	Function_description	E-value
NZ_CP049956.1\|WP_049396468.1\|3526503_3527571_-\|DUF1624-domain-containing-protein	gnl\|CDD\|226749	COG4299, COG4299, Uncharacterized protein conserved in bacteria [Function unknown].	4.46701e-50
NZ_CP049956.1\|WP_165710997.1\|3538975_3539368_-\|VanZ-family-protein	gnl\|CDD\|227939	COG5652, COG5652, Predicted integral membrane protein [Function unknown].	0.000356874
NZ_CP049956.1\|WP_012481263.1\|3517904_3519125_+\|multifunctional-CCA-addition/repair-protein	gnl\|CDD\|182810	PRK10885, cca, multifunctional CCA addition/repair protein.	0
NZ_CP049956.1\|WP_005411048.1\|3533692_3536401_+\|TonB-dependent-receptor	gnl\|CDD\|273804	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor. This model represents a family of TonB-dependent outer-membrane receptors which are found mainly in Xanthomonas and Caulobacter. These appear to represent the expansion of a paralogous family in that the 22 X. axonopodis (21 in X. campestris) and 18 C. crescentus sequences are more closely related to each other than any of the many TonB-dependent receptors found in other species. In fact, the Crescentus and Xanthomonas sequences are inseparable on a phylogenetic tree using a PAM-weighted neighbor-joining method, indicating that one of the two genuses may have acquired this set of receptors from the other. The mechanism by which this family is shared between Xanthomonas, a gamma proteobacterial plant pathogen and Caulobacter, an alpha proteobacterial aquatic organism is unclear. [Transport and binding proteins, Porins].	2.95974e-172
NZ_CP049956.1\|WP_165710991.1\|3515105_3515516_-\|biopolymer-transporter-ExbD	gnl\|CDD\|223917	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion].	1.73151e-14
NZ_CP049956.1\|WP_005411035.1\|3519204_3519639_-\|SseB-family-protein	gnl\|CDD\|377787	pfam07179, SseB, SseB protein N-terminal domain. This family consists of several SseB proteins which appear to be found exclusively in Enterobacteria. SseB is known to enhance serine-sensitivity in Escherichia coli and is part of the Salmonella pathogenicity island 2 (SPI-2) translocon. This entry contains the presumed N-terminal domain of SseB.	1.24916e-09
NZ_CP049956.1\|WP_111193669.1\|3530861_3532151_-\|sugar-MFS-transporter	gnl\|CDD\|340952	cd17394, MFS_FucP_like, Fucose permease and similar proteins of the Major Facilitator Superfamily of transporters. This subfamily is composed of L-fucose permease (also called L-fucose-proton symporter) and similar proteins such as glucose/galactose transporter and N-acetyl glucosamine transporter NagP. L-fucose permease facilitates the uptake of L-fucose across the boundary membrane with the concomitant transport of protons into the cell; it can also transport L-galactose and D-arabinose. Glucose/galactose transporter functions in the uptake of of glucose and galactose. The FucP-like subfamily belongs to the bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4 (FucP/MFSD4) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.17091e-120
NZ_CP049956.1\|WP_049460420.1\|3527570_3528719_-\|N-acetylglucosamine-6-phosphate-deacetylase	gnl\|CDD\|224733	COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism].	7.78572e-164
NZ_CP049956.1\|WP_024957032.1\|3532529_3533549_+\|ROK-family-protein	gnl\|CDD\|237092	PRK12408, PRK12408, glucokinase; Provisional.	0
NZ_CP049956.1\|WP_065183236.1\|3520027_3521071_-\|hypothetical-protein	gnl\|CDD\|367567	pfam03572, Peptidase_S41, Peptidase family S41.	8.01971e-10
NZ_CP049956.1\|WP_165710995.1\|3528718_3529747_-\|SIS-domain-containing-protein	gnl\|CDD\|225132	COG2222, AgaS, Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane].	7.90639e-115
NZ_CP049956.1\|WP_165710994.1\|3523175_3526205_-\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	gnl\|CDD\|238654	cd01344, PL2_Passenger_AT, Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 2, of autotransporter proteins of the type V secretion system of Gram-negative bacteria. This subgroup includes the passenger domains of the nonprotease autotransporters, Ag43, AIDA-1 and IcsA, as well as, the less characterized ShdA, MisL, and BapA autotransporters.	4.35032e-38
NZ_CP049956.1\|WP_012481259.1\|3511972_3514834_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	3.26575e-29
NZ_CP049956.1\|WP_065183189.1\|3521120_3522155_-\|peptidase	gnl\|CDD\|367567	pfam03572, Peptidase_S41, Peptidase family S41.	1.03432e-13
NZ_CP049956.1\|WP_165710996.1\|3536512_3538870_+\|family-20-glycosylhydrolase	gnl\|CDD\|119333	cd06563, GH20_chitobiase-like, The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.	0
NZ_CP049956.1\|WP_165710993.1\|3515712_3517698_+\|transglycosylase-SLT-domain-containing-protein	gnl\|CDD\|183236	PRK11619, PRK11619, lytic murein transglycosylase; Provisional.	8.18926e-72
NZ_CP049956.1\|WP_005411045.1\|3529754_3530822_-\|LacI-family-transcriptional-regulator	gnl\|CDD\|380487	cd01545, PBP1_SalR, ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	8.65071e-119

>NZ_CP049956.1|WP_065183190.1|3522531_3522966_+|hypothetical-protein
MNTPHPTYPRLQALLGAALPGLQLPTTAAEALEDALAEANEQAPPSAFFARLRDIAHSHAADGQAWRERQLSEGRGRELAEATRCLAALSACGGVLLAAQSARETDDAQAQCPPQVEEGLLHAMVVLADHAGALVEPDACAPLL
>NZ_CP049956.1|WP_065183189.1|3521120_3522155_-|peptidase
MSIDLRVMATALSALFCTTAQAVAPDAIDLPTAQAQAQLLDMLEKESLYRDRVDWRAIRTRLKAAQNEPAEARAVLRQAIGRSSGGHGAWISAKQLQAKAERLARANGTATVAQKATTAPAEALDPRIGRVEIEGYSVMQGLTAHQQMKERAKRWQAIIDDQDNGSRCGWIVDLRGNTGGNMWPMLLGVAPLLRVTPSADENVGSFAAAEGPSLWQLTSSSVRLGDRVRIDLGGPGYLLKHPGAPVAVLTGPRTASSGEATVLSFRGRPQTRSFGQPTSGLSTANVMRPLADGSALLLTTSVMRDRTGRGDGLKISPDQRTDGDAATLAAAQAWLLARPACAGH
>NZ_CP049956.1|WP_065183236.1|3520027_3521071_-|hypothetical-protein
MNSRLPARAILGAALLLACGGPALAAPAAAVELPSAEALEQMLHLLETQSLYRDRVDWSDARARLAAAGDDRAEQRRVLDEAAARSSGGHGRWISPSQQRDRSGRAQRVNAGQGAALAESPKVDARIGVLKVGPFVEDLQRSEQERYEARKAYALALQQRVVDLDDGTRCAWVVDVSSNGGGNMWPMLLGLLPLLHGTPDTQGALIGAFRSADGLQWWRQGEGEVRQDGTQGLRSRQAAYHLRAGTAPVAVVMGAGTASSGEAVALAFRGQPGSRSFGQPSAGFSTGNRPTTLVDGTTLLLTHNLMTDRNGQGDGGRMQPDQATASGPATLAAAQAWLLAQPACQAR
>NZ_CP049956.1|WP_065183188.1|3519688_3520024_-|hypothetical-protein
MILIGQQERVLIVGPTEAHHCLRCQTETEFAPQLRYKMARIDLLFGLTYQRRYELACTRCEHGWVLDTETMDQQLGGVPIPWRHRFGLPLMLVGVAGLAALGWLSRHGFLG
>NZ_CP049956.1|WP_005411035.1|3519204_3519639_-|SseB-family-protein
MDHDTPFEPLNDLEVRLLQAQDGTLTASQFLDGLLTSTAFVLLDKAIGEDGAWDESISPLVLTSESGEPMFAVFTAPERAGLWHEQLPQFAHAMPIAVHALLAGIGDGVGLVLNPGLDVGMEMIPDAVAQLKQRAAAITRGMAH
>NZ_CP049956.1|WP_012481263.1|3517904_3519125_+|multifunctional-CCA-addition/repair-protein
MKIYLVGGAVRDRLLQRPAGDHDWVVVGATPAQMEAQGYTAVGRDFPVFLHPKTGEEYALARTERKSGRGYRGFVVDADPGVTLEEDLQRRDFTINAIACDEETGTLVDPYGGVRDIEQRVLRHVGPAFVEDPLRVLRAARFMARFAPLGFTVAEETMALMREIAASGELDALVPERVWQELRKALVSERPSAFLRTLHDAHALGPILPELEALYGVPQRAEFHPEVDTGIHQEMVSDMAAKLAPGDDLVGFAALTHDLGKGLTPPEEWPRHIMHEQRGIKPLKALCARLKIPAEHQQLAEAVCREHLNVHRIDELRDATVLELLGRCDALRRPERVARIALCCEADKRGRLGFEDADYPQGETLKRLHQAALSVQARDLDTTHLKGPAIGEALAKARVKAIAAAR
>NZ_CP049956.1|WP_165710993.1|3515712_3517698_+|transglycosylase-SLT-domain-containing-protein
MLGAMTRRSSTALSLLPLATTLLIGCANAQSLDAQNAQLKAAIAAAERGQFDPGQAAALSRHPAYGWLEYANLRRNIDTVDTAQAQAFLKRYDGQAVANTFRSVWLPSVARRQDWPTLLANWAPTDNAGLRCAQLTARQVTGKVDPQWISEAQDLWRKNGKSLPDGCDAVFAVLQAQGGLSDALRWERIDAAADAQQPAVMRSAARGLPAADLAQANSYAAFVDKPNASALNWPRNERSRRIATDGLAKLAKADPAATEQQLPQYAQALGLSAEQQGQVLYQIALWTVASYLPDSARRLNAVPESAYDERLHEWRVREAMSRGDWPAALTAIRKMASKQRSDPRWRYFEGRMLEKTGQAQQAQPLFREAARAPTFHGFLAADKLQQGYTLCPWKPNDSAQAQAVIARDPAIQRAMALYQIDRTGWAVAEWNSALSRFDDTQRRLAVRVAQDNGWFDRAVFALGKQPQEQRLYDLRFPLHHDATIRRESARNAIDPAWVAAEIRAESTFTPRARSPANAMGLMQVLPATGAGVAKSIGLTGYGGADSLYDPDTNIAIGTAYLRQLMNKYDGLPYVTIAAYNAGPTPTARWQSQRPGFDPDLWIETISYKETREYVARVLAFSVIYDWRLNGDALPLSDRLMGRLVDKRKNFSCAANAEQGGD
>NZ_CP049956.1|WP_165710991.1|3515105_3515516_-|biopolymer-transporter-ExbD
MRYASVHAGALMSGINLAPLVDVLLVLLALVVTTLPMAQTTAVRTFQQRTVCPPGPGHTPPASIALHLDAAGGVYWNDRPLDDPSLQHALAQLQQLPPALQPSLHLTTADSTDYGDMARVLFAIEGRGLRVTAQGY
>NZ_CP049956.1|WP_012481259.1|3511972_3514834_-|TonB-dependent-receptor
MIHLHHRPLAVAVALCVTALAPLGAAAQSTTNLDAVEVTGTRIKRAEVEGQVPIQTLTRGDIERTGLTSIGEVLQQLTGSGSALNAKFNSSGNFGFPPDGSGVGAGSAQVDLRHLGAKRVLVLVDGIRWVNESSASGVGSATDLNTIPLAIVERIEVLEDGASSLYGSDAIAGVVNIITRRDFDGGQVTLNYGEYSKGDGTQKGVDLAWGKSGDRFSLFLGASWTKQDPVFAKDREQSRFPIPGTGLAFGSGGIPQGRFMFTDPNTGAVQNIVPNTGVSNPRYDGSAGCSRTDDYHCFTTADRFNFAEYNMVLTPSERKGLFGQFRFDITDNVQWYVKALGNRRESTNQAGPEPLFFGPDGATGNPLADNIVVSRLNPYNPFGFDLVSGDNMSLIGRRPVEGGARVFKQKVDTTYFATGLVGDFHAADRSWYWDVNGMYSKNKAEQTNYGSYDIYKVNMALGDPSICAATPGCVPLNIFGGVGSITPDMLKWIQPVVRDRSQNELSLFTANLSSELFSLPAGPVSFATGFEYRKYKGSYQPDPLTVIGHYNGVPSQPTSGSYDVNEAYLELSVPIFADSSFGKKLDLSLAGRYSDYSTFGGEFTPKYGLRWQVTDDFVLRTTYAEGFRAPSIGELYGSAARADLQLFDPCSVGLGGTPPRGSAANCAALGVPAGFQQANSQISVTTGGNRELEPERSRSFSAGFVWSPWFGNNASWSERFDVEVTFYRHAIDGAIQAINAQTQLDLCVDTLDPVYCDGITRASTGAVSSFNNRLTNLGSIKTDGWDVDLFWTLPQTSIGQFKLAWKNTFVGRYEATGAAGQKQPQKPGVEVADSSIPEWTSNASIGWTMDRWSANWTVRHISELTENCGDAAAFPVCSNQAAGTNTLSATTFHDMQVGYKIDWMKGLQLTAGLNNVFDKDPPICLSCSLNGYDASTYDIPRGRYWYLRADLRF
>NZ_CP049956.1|WP_165710989.1|3510665_3511847_-|hypothetical-protein
MFSKEILVEINEKSWKKKSVPPWGLKAQPKQIVDIGQSLLLLGALTSPNGLSAGSPERYWACVRYFSACAATDDLRISLPFTNLDPHQRGILSDDFGVALSINWLVEQLGGAKNIVDGRQFIVNMGVRKSKKKIPKVGPGKCPDFVIEDKNGLMHVLECKGTQSGRSYLDRAMATGKEQKKGIRIEGGLRGESLVIGVLLSDERSRSSSRIVVVDPEPPALTVVNARNKGRAQEVMKRLSFAKAINLSGFSRLAFEVAWPDSQGMGDTEMKLLTPMERRSAMSDPDDRWRAVQAELDLELEGLRQEDQGAFSVKTVQVEIPAIKLDSGEIARRLTIRRGISAPAVLEFSQDKRDVRSVLEQVAPGEQAISIVTEGNHSRLDYGDLFFSEMIFD
>NZ_CP049956.1|WP_165710994.1|3523175_3526205_-|autotransporter-outer-membrane-beta-barrel-domain-containing-protein
MYRAVPRAFRPRRLAVSVLQALAVPSLLLTTASVAWAGCNSPAPTAGQTVTCDTNAPNPQTTPVTANGAAGITVNVAAGAQLQQSGGGSAIALVGAGGHLLSNQGAISSVGGVTVQLGGGSRVDNTGSISTGNNTALQFVGAGDSVLVNRGTISGRTGVQFDAGNDRLEMQSGSISGGILQGDGNDVLLLSDGTIDSVDQGGGDDQMTVTGGAVTGVVAQGSGRDDFIMSGGTIGALQQGDNIDTFRMSGGRIIGAFEDGDQAWMTAGRIGRVNMKLDKNLWDQSGGTVDGNVVTGFDTDTIIISGTAYIGGNISVSGGNDSVTITDGTVRGQVLLSTGSDTFNWSGGGIVYGAIDMGPDNDVANLSSLNQGNLGAVPLFDGGSGIDQLNFNNVKTTGVGRFQNWEAISLANSTELTFDGDLVLGDSGTGTGTLTVDDTSTVYAGSGSHAVRPFNSGGLVEMVNAGRIDLTGTGAGDVFTVRGNYRGDGGGLYLRTVLGADNSTSDRLVIDGGAVTGTTGIGVLNAGGSGAATLADGILVVQALNGGRTAPGAFSLFAPVAAGAYEYFLFKGGVSAGTSENWYLRSTLVAGPAPAPNGSGINGVPPPPTPPVAPPPPITPAPPPPPEGATDPDLTAGETAPPPPPPEPAPVAPPSDPAVPDVPMAGGALPGTGTPPTPGARPAEGAVVPLYRVETAAYAVVPPLLRETSLASLGTFHERQGEQRLLYSQGAFRTAWGRLVGQSSEIHWEGDAQPGFDGDVIGLQAGIDVWAAASDSHRNQIGMFVGRTRAQGKTTGLALGWENVQVGQNRLDDKHVGLYWTFTDSSGGYIDAVAMQSRYDGRVRSSRGLGFGIKGDGTSVSVEAGKPLLHFGQSAWWLEPQVQVIWQRTSLDDRRDAVSSVRFDNDNAWTGRVGLRLAGDYQLADNGWQPYFKLNYWHGRSGEDRIRFDDDVIFNSQRSRALEAGVGVVGRFNRTISAYAVADYTRELGGDRNEKRRIIEGNIGLRADW
>NZ_CP049956.1|WP_049396468.1|3526503_3527571_-|DUF1624-domain-containing-protein
MNSSPPRRLGSIDALRGITVAAMLLVNNPGDWSAVFAPLRHSEWHGCTPTDLVFPFFLFLVGVSMAFSVAPRAQDAAARPALARGVLERALRILVAGALLHLLIWWALDTHHFRIWGVLQRIAVCAALVGVLAVYVRPRVQVGALIALLVGYTVLLLGIGDLAPWTNPASRLDTALFAPWIYQWHADTGLGHDPEGLLSTLGALASTVLGLLAGGLLRNGRSAALAGLGVATAVLGLLLAVVLPLNKQLWTPSYVLWTGGLAALALWLGHVLIDQKGWPALGRRFGVNAITAYLGASVMSVVLMATGIWGWIWQQLATAMPQALELASMLQALVFVALWWGVAWWLDKRKIYLKI
>NZ_CP049956.1|WP_049460420.1|3527570_3528719_-|N-acetylglucosamine-6-phosphate-deacetylase
MVTVLRNARILAGDDFRDDLALVIENGRISALLPDAAPQLGHAAEQVDLGGGWLLPGFIDVQVNGGGGALFNNTPDVAALRTIAQAHRRFGTTAMLPTLISDDVAVMREAIAAMREAITQGVPGVIGIHLEGPYIAPARKGTHDASKFRVPDEGEIALAASLDNGVTVLTLAPERVPLETIRALVERGVIVAAGHTAGTYEEIRAGLDAGVRGFTHLYNAMSPLQGREPGAVGAALEDRDSWIGIIVDGVHVHPASLRVALAAKPRGRLLLVTDAMPPVGADDPSYVLYGETITAVDGVVRNAAGSLAGSALDMATAVRNTVQLLGQPLAEAARMASTYPAQFLNVDDRLGHIAEGYQADLVLLDDALQVRGTWIAGQYEAA
>NZ_CP049956.1|WP_165710995.1|3528718_3529747_-|SIS-domain-containing-protein
MSLSDPTSTLMFAEAAEAADVVARQFSRNHATMETLAASLRAAPPPFVVTCARGSSDHAATYGKYLLETQLGLVVASASPSVGSVYAAPLQLRGALFIVISQSGKSPDLLRNAEAAKAAGARVIALVNVEDSPLAQLADTVIPLHAGAEKSVAATKSYLASLAALLQLAAYWKQDSSLRAALDLLPDALRDAWQCDWSAVTEGLVEATNLFVLGRGLGLGAAQEAALKFKETCSLHAEAYSSAEVKHGPMALVDRGFPVLAFAQPDETGAGTRAVVEEFTARGAQVWMAGAGGNLPVAAAPHPLCAPLLTVQSFYRAINALALRRGFNPDLPPHLNKVTETV
>NZ_CP049956.1|WP_005411045.1|3529754_3530822_-|LacI-family-transcriptional-regulator
MRRATIKDVAEKAKVSLKTVSRVINNEPSVMQATRARVLRAIAELDYEPDPSARNLRSGTTFVIGLVYDNPNPYHIIGVQNGVLAACRETGFGLQIHPCDSSSPLLADELADWVQRSRLAGLVLTAPMSERRDLIQALTARGIKLVRIIAATEDPADGACVFVDDREAAYEITEHLIQLGHQRIGFLWGGSSHRSSGERYAGYEAALKDYGMTVDKHLVVQGDYTFDDGFRGARRLLALREPPTAIFGSNDEIAAGVLAAAKSAGMNVPYDLSIAGFEDSPFSRQSWPPLTTAKQATEDIARHAARLLIAQLRSDAYDDAPAPLHNQGFVPQLVVRGSTAPMRPAGARPLPSDPA
>NZ_CP049956.1|WP_111193669.1|3530861_3532151_-|sugar-MFS-transporter
MSAVSAASVRPNVATSIAIVGVLFFLIGFFTWLNGPLITFVKLAFELSEVGAFLVLMVFYLSYFFLALPSSWILRRTGMKKGLSLSLLVMAGGAALFGEFATQRWYPGALGGLFVIGSGLALLQTAINPYISILGPIETAARRIALMGICNKIAGMLAPVLIGTVVLHGIGDLSATVAAADEATKAQLLNEFAAKIHAPYLAMAGLLVLLAVAVLFSPLPEIKSSEANATPVAAGAAERRSIFQFPHLWLGVLCLFVYVGVEVMAGDAIGTYGHGFDLPLDQTKMFTSLTLGAMLVGYVVGLLLIPKVVSQSRYLTISAVLGVVFCLGAWATHGYVSVAFVALLGFANAMMWPAIFPLAIRGLGRFTETGSALLVMGIAGGAIIPQLFAVLKQHIDFQLTFVLLMVPCYLYILFYSVIGHRAGLPQDKA
>NZ_CP049956.1|WP_024957032.1|3532529_3533549_+|ROK-family-protein
MTASHPAPAHVLSRIAPSFLAADVGGTHVRVARVQASGDAAHPVQVLEYRKYRNADHAGLSAILSDFLGEGPRPTHCVVASAGYAREDGTVITANLPWPLSARQVEADVGLQRVFIVNDFEAVAYAAAQVDASGVLHLCGPETAARGPTLVVGPGTGLGAALWIPTAHGPVVLPTEAGQPTLAASTELEMAIVRHMQRDRAHVSIEHAISGPGLMNLYRAVCALQGQAPTLASPDAVTAAAMADSDAHARQALDVFCGLLGSTIGDMALFYGAHGGVYLAGGILPQIREYLHASTFVERYLQKGPMGEALARIPVKVVEHGQLGVVGAASWYLQQQSAA
>NZ_CP049956.1|WP_005411048.1|3533692_3536401_+|TonB-dependent-receptor
MNTRKTLLSAAIVSCIAFSAHAQQAAQTATDLDTVQVTGIRGSMEKSLDTKREANARVEVVTAEDVGKLPAHNVADTLQRLPGVNISSSSADEGGFDEADRVSLRGTSPSLTQTLINGHTVGTADWFVLSQGNNVGRSVSYSLLPSELVRSVEVNKSSQAKLQDGGTTGTVNILTRKPLEFSKQLTAEGSIGMVRSDQAKSNDPQLSALFNYKNDEGNFGVMVQAFSQKRELRREAQEIPGGFFQIDPNGTVAKSNPDLAGVYAPGLLGSTLFEQTRERKGGLVSLQFKPMDNLTLGLEGFSSELKANNYNRNFMLWGGRILNDRTVEDANGNKILIPGQAPNPGYVIKDGVLSNATFAGQADRDYAVYDMIYRESKAKTNYITFDADWQISDNLGMKFQAGSTKGTGETPRQYIAEVNLARGGGATWATHGNGSPIDWNVGGNIGPSGVTDFGTWGNQQVTAIDKEKWATLDFNQYFADAGVLNSIDFGARFGDHKREAKSPEGATPGAIWNALKNGATANFPGGFANGIGGSFPRDLWYFTPGALKEAVTNNSTWLSGNDGPTGRHNYGAEWKVSEKNFAAYVQGNFSGDRWSGNVGLRYVNIKQDIDTYAAATGSTVPDVSSLFGAWTREAFENKHNRVLPSANFKYDLRDDLVLRVAASQTQTLPDFSALGASSYGSDLNRTGGGGNPKLKPVVSTNFDANLEWYFMPRGMLSIGAYSMRLKDYVAFSTEKEMLFSELTNRLEEYNISRPRNADGKVRGIEVAYEQPIGEYFGVNANYTYADGSTDHTWADGSDNLLGTSKNTYNVGAYFENDTFGARVSYTRRSSFLIGLSGANPYYQDDFGTLSASLSYKATDWLSISFDALNLNNPTYKYYQTAAIPTSFYSNGRQYYLNFRFKY
>NZ_CP049956.1|WP_165710996.1|3536512_3538870_+|family-20-glycosylhydrolase
MVKPSRARMRSAVLLGSLLALLPALPALAADPTPATEAPGPLLRADSLMLIPAPASVQRGQGSGITVRADTVLQAEGEAAQRVASQFADLLARSGGPRLARARGKAAGTSGSIRFQIVPTFRDSGESYTLESTAQGVLIQAGNETGLFYGATTLAQLATGGSNGVLPAVQIQDAPRFSWRGFMLDSARHFQSLDEIKRVLDAMAAHKLNTFHWHLTDDQGWRMEIKRYPKLTDVGSCRLPAGDGGIDPVTGKEHPYCGFYTQDQIREVIAYAAKLHIQVIPEIDVPGHATAAIAAYPELGTIDTPLKPISEWGVFPNLFNTEDSTVTFLENVLEEVIDLFPAKYVHVGGDEAVKDQWEASKQVQQRMRALGIKDEMAMQSHIIKRLETFLEEHDRRLIGWDEILEGGLPPQATVMSWQGTEGGLAAASAGHDVIMSPVGYLYLDYLQTASPNEPPGRPTQVNLGKLYNFEPVPAELAADKRGHILGLQANMFTEHTRSYARLQHNLFPRLAAVAETGWSTPEHRDFRDFLARLPSQLQRYRAWGLAYAQTPFEVGVDYTDNRAANTVTVSLANPLGYEVRYSTDGQPVTAQSPLYQQPLTATLPTTVQAAAFYQGQMLAAKPTITAFTAQSLLSRRSDELLSCVGKKGLVLRLEDDGPREGNRAVFNVDIFQPCWRWPQAQLDGIGSLEVRAGRIPYYFQLAHDEPKRRFEKAKRAHGEMQVRRGDCSGKVLAEVPLPAKPDADGFVTLKATLPKGTQGSGDLCINFTGDTRPAMWVLDEVTLGK
>NZ_CP049956.1|WP_165710997.1|3538975_3539368_-|VanZ-family-protein
MSEVLPAIKPLRRPRLWAGLWAAAVLLVIVVCLIPPPPIPLPENSDKGEHFLAYFILAGSAVQLFRRGRPLLWVGVGLVLMGIGIEFAQGALTSNRMADPTDAIANTIGVLAGMTTALTPLRDLLLRWRG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP049956_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049956_8

3559335-3559435

Orphan

Consensus_repeat	Method
GCTCGCTGTAAGCGAGGGGCTGAGGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP049956_8

>merge|NZ_CP049956|8|3559335-3559435|CRISPRCasFinder
GCTCGCTGTAAGCGAGGGGCTGAGGGTGAAGCGGGTAGGTGCCGACCGTTGGTCGGCACACCGGTTATTGCATGGCTCGCTGTAAGCGAGGGGCTGAGGGT

>NZ_CP049956|8|7|3559335-3559435|CRISPRCasFinder
GCTCGCTGTAAGCGAGGGGCTGAGGGT	GAAGCGGGTAGGTGCCGACCGTTGGTCGGCACACCGGTTATTGCATG
GCTCGCTGTAAGCGAGGGGCTGAGGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049956.1\|WP_049461445.1\|3565638_3566751_-\|rod-shape-determining-protein-RodA	unknown	unknown	gnl\|CDD\|274033
NZ_CP049956.1\|WP_005411059.1\|3548603_3548987_-\|BON-domain-containing-protein	unknown	unknown	gnl\|CDD\|225379
NZ_CP049956.1\|WP_005411077.1\|3570611_3571658_-\|rod-shape-determining-protein	unknown	unknown	gnl\|CDD\|237562
NZ_CP049956.1\|WP_165711003.1\|3559693_3560905_-\|D-alanyl-D-alanine-carboxypeptidase	unknown	unknown	gnl\|CDD\|224600
NZ_CP049956.1\|WP_165711000.1\|3552659_3553250_-\|DUF2242-domain-containing-protein	unknown	unknown	gnl\|CDD\|378349
NZ_CP049956.1\|WP_005411067.1\|3557656_3557935_-\|YbeD-family-protein	unknown	unknown	gnl\|CDD\|179161
NZ_CP049956.1\|WP_165711002.1\|3556958_3557669_-\|lipoyl(octanoyl)-transferase-LipB	unknown	unknown	gnl\|CDD\|237681
NZ_CP049956.1\|WP_049397139.1\|3546551_3548369_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|226702
NZ_CP049956.1\|WP_165711004.1\|3561005_3562274_-\|septal-ring-lytic-transglycosylase-RlpA-family-protein	unknown	unknown	gnl\|CDD\|223868
NZ_CP049956.1\|WP_024957042.1\|3549157_3550201_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|183212
NZ_CP049956.1\|WP_165711005.1\|3569308_3570490_-\|rod-shape-determining-protein-MreC	unknown	unknown	gnl\|CDD\|237560
NZ_CP049956.1\|WP_033834551.1\|3564407_3565502_-\|rod-shape-determining-protein-RodA	unknown	unknown	gnl\|CDD\|274033
NZ_CP049956.1\|WP_005411078.1\|3571941_3572880_+\|carbohydrate-kinase-family-protein	unknown	unknown	gnl\|CDD\|238917
NZ_CP049956.1\|WP_049418931.1\|3551400_3552642_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049956.1\|WP_012481291.1\|3562270_3563416_-\|lytic-murein-transglycosylase-B	unknown	unknown	gnl\|CDD\|274066
NZ_CP049956.1\|WP_165711001.1\|3553496_3555674_-\|carboxy-terminal-processing-peptidase	unknown	unknown	gnl\|CDD\|236873
NZ_CP049956.1\|WP_005411061.1\|3550490_3551396_-\|decarboxylating-6-phosphogluconate-dehydrogenase	unknown	unknown	gnl\|CDD\|236582
NZ_CP049956.1\|WP_049461447.1\|3566747_3568823_-\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|274573
NZ_CP049956.1\|WP_005411065.1\|3555930_3556941_-\|lipoyl-synthase	unknown	unknown	gnl\|CDD\|235493
NZ_CP049956.1\|WP_005411075.1\|3568826_3569312_-\|rod-shape-determining-protein-MreD	unknown	unknown	gnl\|CDD\|225444

Protein	Function_ID	Function_description	E-value
NZ_CP049956.1\|WP_049461445.1\|3565638_3566751_-\|rod-shape-determining-protein-RodA	gnl\|CDD\|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	1.02094e-144
NZ_CP049956.1\|WP_005411059.1\|3548603_3548987_-\|BON-domain-containing-protein	gnl\|CDD\|225379	COG2823, OsmY, Predicted periplasmic or secreted lipoprotein [General function prediction only].	5.08321e-17
NZ_CP049956.1\|WP_005411077.1\|3570611_3571658_-\|rod-shape-determining-protein	gnl\|CDD\|237562	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional.	0
NZ_CP049956.1\|WP_165711003.1\|3559693_3560905_-\|D-alanyl-D-alanine-carboxypeptidase	gnl\|CDD\|224600	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane].	8.06815e-150
NZ_CP049956.1\|WP_165711000.1\|3552659_3553250_-\|DUF2242-domain-containing-protein	gnl\|CDD\|378349	pfam10001, DUF2242, Uncharacterized protein conserved in bacteria (DUF2242). This domain is found in various hypothetical bacterial proteins, and has no known function.	3.86252e-62
NZ_CP049956.1\|WP_005411067.1\|3557656_3557935_-\|YbeD-family-protein	gnl\|CDD\|179161	PRK00907, PRK00907, hypothetical protein; Provisional.	1.56476e-63
NZ_CP049956.1\|WP_005411061.1\|3550490_3551396_-\|decarboxylating-6-phosphogluconate-dehydrogenase	gnl\|CDD\|236582	PRK09599, PRK09599, NADP-dependent phosphogluconate dehydrogenase.	0
NZ_CP049956.1\|WP_049397139.1\|3546551_3548369_-\|PAS-domain-containing-protein	gnl\|CDD\|226702	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms].	5.42392e-57
NZ_CP049956.1\|WP_165711004.1\|3561005_3562274_-\|septal-ring-lytic-transglycosylase-RlpA-family-protein	gnl\|CDD\|223868	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane].	2.32976e-51
NZ_CP049956.1\|WP_024957042.1\|3549157_3550201_+\|oxidoreductase	gnl\|CDD\|183212	PRK11579, PRK11579, putative oxidoreductase; Provisional.	7.47061e-133
NZ_CP049956.1\|WP_165711005.1\|3569308_3570490_-\|rod-shape-determining-protein-MreC	gnl\|CDD\|237560	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional.	4.54363e-87
NZ_CP049956.1\|WP_033834551.1\|3564407_3565502_-\|rod-shape-determining-protein-RodA	gnl\|CDD\|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	3.06609e-141
NZ_CP049956.1\|WP_005411078.1\|3571941_3572880_+\|carbohydrate-kinase-family-protein	gnl\|CDD\|238917	cd01942, ribokinase_group_A, Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.	1.16177e-116
NZ_CP049956.1\|WP_012481291.1\|3562270_3563416_-\|lytic-murein-transglycosylase-B	gnl\|CDD\|274066	TIGR02282, Membrane-bound_lytic_murein_transglycosylase_B, lytic murein transglycosylase B. This family consists of lytic murein transglycosylases (murein hydrolases) in the family of MltB, which is a membrane-bound lipoprotein in Escherichia coli. The N-terminal lipoprotein modification motif is conserved in about half the members of this family. The term Slt35 describes a naturally occurring soluble fragment of MltB. Members of this family never contain the putative peptidoglycan binding domain described by pfam01471, which is associated with several classes of bacterial cell wall lytic enzymes. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	5.42047e-138
NZ_CP049956.1\|WP_165711001.1\|3553496_3555674_-\|carboxy-terminal-processing-peptidase	gnl\|CDD\|236873	PRK11186, PRK11186, carboxy terminal-processing peptidase.	0
NZ_CP049956.1\|WP_165711002.1\|3556958_3557669_-\|lipoyl(octanoyl)-transferase-LipB	gnl\|CDD\|237681	PRK14342, PRK14342, lipoyl(octanoyl) transferase LipB.	2.49826e-139
NZ_CP049956.1\|WP_049461447.1\|3566747_3568823_-\|penicillin-binding-protein-2	gnl\|CDD\|274573	TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_CP049956.1\|WP_005411065.1\|3555930_3556941_-\|lipoyl-synthase	gnl\|CDD\|235493	PRK05481, PRK05481, lipoyl synthase; Provisional.	0
NZ_CP049956.1\|WP_005411075.1\|3568826_3569312_-\|rod-shape-determining-protein-MreD	gnl\|CDD\|225444	COG2891, MreD, Cell shape-determining protein [Cell envelope biogenesis, outer membrane].	7.1233e-30

>NZ_CP049956.1|WP_005411067.1|3557656_3557935_-|YbeD-family-protein
MEIKSDNPDHGFQFPGQFELSAMGPANRGLEHELPRLLLAAGIDVVNERISWKHSSNGKYVSVRIVFKAESREQYDLAHQALRDHPEVKWTL
>NZ_CP049956.1|WP_165711002.1|3556958_3557669_-|lipoyl(octanoyl)-transferase-LipB
MDAVADSCPAEAAPEDRAPRPALVRDLGRQAYEPVWRAMQRFTDQRSDTDADELWVVEHDPVFTLGQAGKDEHVLAPGDIPVLHVDRGGQVTYHGPGQIVVYPLLRLPRLGIGVRDYVCRIEQAIIDTLGEWNIGAERREGAPGVYVGGAKIAALGIRVRRGCTFHGLAFNVAMDLEPFHRINPCGYQGLQVTSVVDLSGPSGMEAVKPVLLDHLARQFGLLLQHTPELPDLSAAA
>NZ_CP049956.1|WP_005411065.1|3555930_3556941_-|lipoyl-synthase
MTETTARSIPLQIVQGDSPSAAPLQAGVKQLGGDKINRSPVQFADAPVLRKPSWIRVRIPSGNAVQNLKAKLRENRLVTVCEEASCPNIHECFGHGTATFMILGEVCTRRCSFCDVAHGRPKPPDANEPASLGQTVADMGLKYVVVTSVDRDDLRDGGAQHFVDCITAIREKSPGTRIEVLTPDFRGKGRMERALEILAQNPPDVFNHNIETVPDLYRNVRPGADYQWSLNLLKNFKAQHPDVPTKSGIMLGLGEDFEQIKATLRDLRAHDVDMITIGQYLQPTAHHHPVLKYWTPEDYKALEDYGYELGFSHVASGPMVRSSYHADVQAKGAGVS
>NZ_CP049956.1|WP_165711001.1|3553496_3555674_-|carboxy-terminal-processing-peptidase
MKFKTPAFLMALALVAPLALAAKADSPALPAAATADQVTTSKLVYGLLSDSRYAYRPRALDEATSKDVFKRYLETLDGGKQYFTQADVARFAPFEANIASAIRGGELEPAFQVFAVYKQRVGERVAYARKLLKQEPDFTTDERFEYDRKKVPWAASSAELDELWRKSVKNDWLRLKLAGKKPDDIRKTLDKRYATLEKSVNELKGEDVFQFFMNSYTSAVDPHTDYFTPRTAENFNQAMSLSLEGIGAQLQRQDDVVVIREIIAGGPAAVDGTLKPGDRIVGVGQGKSGLVEDVIGWRIDDVVAKIRGAKDTQVKLEFIPAAEGADGKHHTLVLTRQKVRLAEQAAKGETMTIPAANGEPARRIGVIKLPTFYQDFEGRRRNAADYASATRDVAKLLAGFKNDKLDGVVLDLRNNGGGSLDEAIELTGLFIEQGPVVQVRESGGRVTVNSDRNQGVAWDGPLAVLINRGSASASEIFAGAIQDYGRGLVIGETSFGKGTVQNIVDLDRWPSGETQRFGQVKLTIAQFFRISGSSTQHKGVVPDLAFPASVDATEFGESTYDNALPWTRIAAVPHTQYGNFAPLLPKLETRHDARIATDKEFQWWNEDVQQFRTEAAKKYISLNEATRRAERERQDTQRKERQVQRKELGLALDPLADDSSDDGLTGNERDIVKDAAREKAAEKRPDPLLRESASILADAVNLLANDRPLSAQVLPQSTGAGRWAD
>NZ_CP049956.1|WP_165711000.1|3552659_3553250_-|DUF2242-domain-containing-protein
MRAFRLSSVAVALASALILSACGGRAADSTLLRESFDSGDTFSRTVDGRPGDACEAARRTLLSQGYAIARSDAAQVEGNKNFQPREDDHEQLVLRISCAPRGSQTLVFVSAVQDRYALKKSPTSASVGVGALGSVSLPFGSNDDSLVKVASSTVTDAEFYRRFFQRLQQYLPAEAGKPVPPVATTPEPAPASTDQD
>NZ_CP049956.1|WP_049418931.1|3551400_3552642_-|hypothetical-protein
MGVALLLPALGAAATPLDCTQGLLQRLGWHFETRAIGAPQVHGGPVCTRASLPEAQAAGDLRVQWPADMPAAARKALLQQVLDDPATVCAYAFQLGAATQRAAAALQGNAGFRFSGLQLGWIGFGLHGAHAQGWQRTRSFGRGFVPIKGNSQALQAFYSGNVRAECGVGRQVAQLATQRELYGDAAFDAGFSAEELSIGTFLALHDTDSILLGAHAGDYFADGKAVRTSAMGRQAFVGVPGFIEHVYDKGTLDDLSNQAENFVVVSVGEEAAQALAAHGGLAWYDQRNAELWALAQDIPRIGRRYFERLLFERDPDLRARLEPRYHATLARMDRLLDDPFYQQFVIYVHPRGIRPIGYHIARLLDRNPRTPFSIDLAVHNLHTTLYRRWREAQQRHCAATGRPGSLTLDPNRR
>NZ_CP049956.1|WP_005411061.1|3550490_3551396_-|decarboxylating-6-phosphogluconate-dehydrogenase
MDIAMIGLGRMGANMAQRLHRGGHRVVGYDPGEGARQRAAEAGLEVVDSLAAAVAALPVPRVVWLMVPAGETVDQTLGQLTPHLAEGDIVIDGGNSNYQDSIRRAKALAEDDLGYVDCGTSGGVWGLQEGYSLMVGGEAAVVEQIAPLLRTLAPAEDRGWGRVGPSGAGHFTKMVHNGIEYGMMQAYAEGFALMERKQEMELDLAQVAEVWRHGSVVRSWLLDLSTEALKRNPSLDGIAPYVEDSGEGRWTVAEAIALDVPAPVITLSLLERLRSRESNSFTDRLLSAMRNEFGGHAIKKS
>NZ_CP049956.1|WP_024957042.1|3549157_3550201_+|oxidoreductase
MRPDLQLALIGYGLAGRVFHAPLIQHTPGLVLHSIVSSQRDTLLRAFSDVHVRATPQEVFDDPAVDAVVIATPNEQHAPLAIAALAAGKHVLVDKPFALDVAEAEAVLAAARDAGRIATVFQNRRFDADFLTLQALLADGTLGDIAECHVHFDRYRPQVRDRWREQDGPGSGLWYDLGPHLLDQMLVLFGWPEAIDADLAVQRDGGSAIDYFHAVLHYPRHRAIVHSGSLVAAPTPHFSVHGSKASWIKHGLDVQEAQLRRGVAPGAPGWGIDPRHGELVRCDAEDNVQRGTVDNLPGDYRRLYAQFAAAMHGDGEATVDPVQALQLMRLLQAGMDSAREGRRIALG
>NZ_CP049956.1|WP_005411059.1|3548603_3548987_-|BON-domain-containing-protein
MSNTTRTLIASALTLGLALSSSAAFAKDPAAKSPPTSAHPATHADRHDSNEPVTDTWITTKVKADLLASSNVPGTEIKVETVNGVVSLSGAVASQAEKDKAVTTAKGIKGVTRVDAAALKVSAAAKR
>NZ_CP049956.1|WP_049397139.1|3546551_3548369_-|PAS-domain-containing-protein
MALVFSDDIWDRWRLPALALAAAAIIVVPWLTLRKLQQDNEQAMAWVNHTQAVGVALQQLQADVRDVESAALTLSKGVDAPGLRERMAAANDIPGRLAELGRMTRDNPDQLIRIGRIESMLEGRMALARELARSEPNSDQRELVKDLSTRYPIRGLVEELQASEQQLLTLRAEQAARQRKQTELVSWSSLVIQLGLLGLVLWLLQRQIGRRLHAERQSLRSAARAASVLQTVREPIVLLDRDLRVQLHNTAFAELYGLQDERADGLLLESVGDGAWKDAVVRQRLSDVLLRGRELWDFEHEQRTADGMARYMLLNARRMPLPDTDDEVVLLTVSDVTMQRAVQLRVEELNRQLEGKVAQVSEVNRELEAFSYSVSHDLRAPLRHVAGFSDKLSRHLGDAADDKSRHYLDVISSSARRMAALIDDLLVYSRLGRAAMRQQAVDMQSLVADTRAMLDSNLQAEAENSGHVHQVEWSIAPLPIVVGDENMIRQVWLNLLGNAVKYSGNREPAKIRVDYQPQPDGGHQFTVSDNGAGFDMAYAGKLFGVFQRLHKASDYPGTGIGLASVRRVLTRHGGRIWAEAEPDVGATFHFYLPPAIDADKQGPSA
>NZ_CP049956.1|WP_165711003.1|3559693_3560905_-|D-alanyl-D-alanine-carboxypeptidase
MNFRSAATALAATLVVGLASAQTPLPTPATPAPAAAPATVATPPAPAPSVSKAWVLMDYATGQVLAGENIHEQLAPASITKVMTSYVIAAEVKNGKVRADDQVMMSERAWREGGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAAKIGMKDSHFVNAHGLTAQGHHSTAYDLALLGRAMVRDYPETYAYNKIKEFQVGNIKQPNRNLLLWRDGSVDGIKTGHTSEAGYCLMSSAQRGDQRLIAVVLGGESEKQRADDSLALLNWGFRFFETHRLYEPGKAVAEHKVWKGTTDKVQLGVAQPMLVSVPRGRYNDLKPSIDVPKTLEAPFTAGQQIGTVKVTLDGKVVAEAPLVAVAAVEQAGFFKRLWDSFWMWWESE
>NZ_CP049956.1|WP_165711004.1|3561005_3562274_-|septal-ring-lytic-transglycosylase-RlpA-family-protein
MNIRWLVPSLIVFALAACSSAPKKPATAGHGGKSSGTLVQGRGSRPAHCPEGSPYAAAKEDLSTRGNYTAGGLYKPGVRDSTPDYIPNVACIPEPEVTAEERSAIGNKSPYVVLGKSYKVLDDTHDYVERGTASYYGAKFHGRLTSNREVYDMYQFTAAHKTLPLPSFARVTNLDNGESVIVRVNDRGPFHDGRVVDLSYAAAVRLGITQRGTGNVEVRALQPGESNLMAQKPSRRERRAAEAAAATAVASARPVPAPRASTDSDIDRLVNRLPTDGAPARGQPATTRGVASTAPDVAVSSLPPSAPVVRTSAPAPAVVASTAPRAVAPAPVRAAAAAPSLSQQMVGAVMVQVASFSNRDNANRAMGQLSAAGIVGATISDIAAGGRTLFRLRVPASDHASAAELAGRIAGLGLGSPQIVKD
>NZ_CP049956.1|WP_012481291.1|3562270_3563416_-|lytic-murein-transglycosylase-B
MIRRTLACMLTLGLVACATQPKSPPSSPQASSTPRQPATKAHGPAEAAPEATAATAPPVDLTPVPFEVARARFIADTAKRYGLKPEQISSVLDQAQVRQPIIAAMSRPAERVKPWNEYRPMFISKARIDGGRAFLAEHRAELDRVQQRTGVPAEVIVAIIGVETSYGKNAGSHRVLDALYTLAFYYPRSGDPAKLEREVRRELFFRDELAKLFELGREEKLDITTLKGSYAGAMGMGQFMPSSYLDYAVDGNGDGRRDLFNSYDDVFSSIANYFVKKGGWVRGGQVAVPATLAPGREEFNPTEWMPTWSLADLAQRGYQPSTPVQPGATATPITLEGSTGKQYWLGFQNYYAITRYNLSKMYAMAVFQLSQAIAGQELPPA
>NZ_CP049956.1|WP_033834551.1|3564407_3565502_-|rod-shape-determining-protein-RodA
MEWKRLLGGCREVARTIDLPLLIALLILMGAGLAVLHSVSGPVAGQAARFAGGLASMWLLSRVSLLRLRAWTPAIYALSMLPLMAVYVIGTGKYGQRWLNLGVFYLQPSELLKLSLPLMMAWYLHRQPLPPSPRTVLTTTVLIGVPAVLILMQPNLGTATLVTASGVFALLLAGLHWGWVATGATGLAVAAPLAWFGLLRQYQKDRVLTFLDPSADPLGTGWNILQSRIAIGSGGWDGRGWGQGTQATLDFLPEYTTDFAFSVLAEEFGWIGVATVFALYLFVVGRCLWIAVHARDTHARLLAGSLGLAFFVYVLVNGGMISGLLPVVGIPMPLISYGGTSAVSLLAGIGLVMAVRGHRPVHGG
>NZ_CP049956.1|WP_049461445.1|3565638_3566751_-|rod-shape-determining-protein-RodA
MKVLLRWAGDMLRRFFSTLDWVLCLALGALMVIGLATLKSAGGDGLVMAQGARFAVGMAALWGISRVPILRIRSATPMIYAISMIPLLAVFVLGTGKYGRQWLDLKFFYLQPAELLKVSLPMMVAWYLHKMPLPPRFNTVLVALIIIGVPTGLVMLQPDFGTGVLIAASGVFVLLLAGLPWWWVGLGVGGVAAVAPVAWFWLLRPYQKDRIMMFLDPEMDALGAGWNIIQSKIAIGSGGFDGKGWGEGSQSHLNFIPEQTTDFAFSVLSEEFGWMGVALVLTLYLVVIGRCLWIASQSRDSYSRLLAGATGLAFFVYVLVNGGMISGLLPVVGVPMPLISYGGTSAVSLLAGFGLVMAVRSHNPVHGGYG
>NZ_CP049956.1|WP_049461447.1|3566747_3568823_-|penicillin-binding-protein-2
MIPRRQVKNPHAEAEQFRRRAALGFLGVLVCLLGLGGWYFKLQVLDHDVYATRSEANRIKPRPVVPGRGMIYDRNGRLLAENVPAFRLDVTPDKVKDMDATLEGLAKIISISPEELEAFNKSRKARRKFLPVTLKLRMSDEEMARFAVDRWRFPGVELEPYLTRRYPYGDLFAHIIGYVGRVDDKDLEILGEGNAALTHIGKSGLERYYEQQLRGKVGYEQVETNVQGRAIRTIGRVAAQSGADLRLSIDADLQRAMVAAFGDQEGSAVAMDPRTGEVLAMVSLPSYDPNLFVNGISHADFKALNENPSRPQFNRLVLGGVAPGSTLKPLIGLAGLDSGVRRPEDKVLSTGMFYLPGTSRGWGDAHRGGHGWTDLRKSIAESVNTYYYKLALDLGIERFDHYMEYYGFGQPTGIDLTGEIGGILPSPAYKRKTRKEAWYPGDTVNISIGQGDWKVTPLQLARGVSALADGQLRTPHLVIQQRDGFDSDWTATPPGESKPVSPNPNNVQAVREGMMATMRPGGSGWRVAVGAPYVMAGKTGTAQVISRKGTAAVNPKSLPMHLRHRALFVGFAPVENPVIAIAVAVEGGGYGGSAAAPIARKVFDAYLLGKMPEGMQPLDSERGTTAIGATAFDNEDAGARQAGDLAAAQLGEHPVQVGAPAPEPAPAPQPGTPAAAAAPATPRPTVAEPAR
>NZ_CP049956.1|WP_005411075.1|3568826_3569312_-|rod-shape-determining-protein-MreD
MSRLRDNPWVLPASLVVALLLGLLPLPALLQPLRPYWLALVLAYWVIETPERVGLGIAFASGVVADLLYGGVLGEQALRLVMLAFILQRFRARIRFFPMSQQMLAIGGLLFNDRIVSALVHILVGEPTLPWSYWWAPLLGMGLWPLVFVLLDAVRFGKRGR
>NZ_CP049956.1|WP_165711005.1|3569308_3570490_-|rod-shape-determining-protein-MreC
MPPYAGPPVASRSGDAASPLRLLAYLALAITLIVLDDQAGWLARLREQANSLVQPVWALAGLPGKLGNQVKDSAASHTQLVTENRELRNQLLLANARLTRLQTAALDNAQLRELLNVAERSGLDVQLAPILDIDLDPVKQRLVLDAGSREGVHVGQAVIDAGGLMGQVISVTGGTSTVLLLTDPDHAVPVTVARNGVRLIVYGRGDTLELRDIPLSAGVEVGDEIVTSGLGGRFPAGFPVGTITGLRPDDTHAFLVGELKPAAQLDRGRDVLLLRPGAAIRIPPELRLQLEETTPGGPATGATVPAGAAPATTTPAPVSSPVVPAAGRQQPSSQARTVAPASSLDPAAPVVPAAGRQQPSSQTRTVAPASSLDPAAPVVPAAGRQSTTPEAQR
>NZ_CP049956.1|WP_005411077.1|3570611_3571658_-|rod-shape-determining-protein
MFKKLRGMFSNDLSIDLGTANTLIYVRGQGIVLNEPSVVAVRQDRAIGGTRSVAAVGAEAKQMLGRTPGHITTIRPMKDGVIADFTYTEAMLKHFIKKVHKSRVLRPSPRVLVCVPAGSTQVERRAIKESAEEAGARDVYLIEEPMAAAIGAGMPVTEARGSMVIDIGGGTTEVAVISLNGIVYSASVRIGGDRFDESITNYVRRNHGMLIGEATAERIKVELGCAYPQAEVQELEISGRNLAEGVPKMIKISSNEVLEALHEPLSGIVSAVKLALEQTPPELCADVAERGIVLTGGGALLRDLDRLISEETGLHVQVADDPLTCVARGGGRALELVDMHGNEFFAPE
>NZ_CP049956.1|WP_005411078.1|3571941_3572880_+|carbohydrate-kinase-family-protein
MSALICGSLAFDTIMVFPDQFKNHILPDKVHILNVSFLVPRMRREFGGCAGNIAYNLHLLGGQPIPMGTVGSDFGPYREYFEGLGIDLSRVRVIDELFTPQAFITTDHDNNQITAFHPGAMMRSYENHVRGVPGVTLGLVGPDGREGMIQNAQEFHEDGIPFIFDPGQAMPLFNGPELRAFIDQADYVVVNDYESNLLQERTGWDEKEIVSRVKAYITTRGPKGAVIHTPEKSYDIPPAHERRVVDPTGCGDAFRAGLIYGIQKGYDWLTIGRMGNLMGALKVEHPGTQNQRFTFDEFNEQFKQQFGYALGA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP049956_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049956_9

3569367-3569487

Orphan

Consensus_repeat	Method
GCAGGATCAAGCGAAGATGCGGGAGCAACAGTCCTCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP049956_9

>merge|NZ_CP049956|9|3569367-3569487|CRISPRCasFinder
GCAGGATCAAGCGAAGATGCGGGAGCAACAGTCCTCGTTTGCGATGAGGGCTGTTGCCGGCCAGCGGCCGGCACTACCGGAGCGGCAGGATCAAGCGAGGATGCGGGAGCAACAGTCCTCG

>NZ_CP049956|9|8|3569367-3569487|CRISPRCasFinder
GCAGGATCAAGCGAAGATGCGGGAGCAACAGTCCTCG	TTTGCGATGAGGGCTGTTGCCGGCCAGCGGCCGGCACTACCGGAGCG
GCAGGATCAAGCGAGGATGCGGGAGCAACAGTCCTCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049956.1\|WP_062605601.1\|3579058_3579481_+\|low-affinity-iron-permease-family-protein	unknown	unknown	gnl\|CDD\|377225
NZ_CP049956.1\|WP_049461445.1\|3565638_3566751_-\|rod-shape-determining-protein-RodA	unknown	unknown	gnl\|CDD\|274033
NZ_CP049956.1\|WP_005411083.1\|3577668_3578121_+\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|238612
NZ_CP049956.1\|WP_005411085.1\|3578655_3578991_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|212083
NZ_CP049956.1\|WP_165711003.1\|3559693_3560905_-\|D-alanyl-D-alanine-carboxypeptidase	unknown	unknown	gnl\|CDD\|224600
NZ_CP049956.1\|WP_165711006.1\|3573145_3573781_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|223620
NZ_CP049956.1\|WP_080354109.1\|3558286_3559345_+\|lipid-A-deacylase-LpxR-family-protein	unknown	unknown	gnl\|CDD\|378338
NZ_CP049956.1\|WP_005411067.1\|3557656_3557935_-\|YbeD-family-protein	unknown	unknown	gnl\|CDD\|179161
NZ_CP049956.1\|WP_165711002.1\|3556958_3557669_-\|lipoyl(octanoyl)-transferase-LipB	unknown	unknown	gnl\|CDD\|237681
NZ_CP049956.1\|WP_165711004.1\|3561005_3562274_-\|septal-ring-lytic-transglycosylase-RlpA-family-protein	unknown	unknown	gnl\|CDD\|223868
NZ_CP049956.1\|WP_062605607.1\|3573768_3574500_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049956.1\|WP_005411078.1\|3571941_3572880_+\|carbohydrate-kinase-family-protein	unknown	unknown	gnl\|CDD\|238917
NZ_CP049956.1\|WP_005411082.1\|3576826_3577588_-\|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE	unknown	unknown	gnl\|CDD\|234689
NZ_CP049956.1\|WP_033834551.1\|3564407_3565502_-\|rod-shape-determining-protein-RodA	unknown	unknown	gnl\|CDD\|274033
NZ_CP049956.1\|WP_005411077.1\|3570611_3571658_-\|rod-shape-determining-protein	unknown	unknown	gnl\|CDD\|237562
NZ_CP049956.1\|WP_062605605.1\|3574627_3576556_-\|M1-family-metallopeptidase	unknown	unknown	gnl\|CDD\|341062
NZ_CP049956.1\|WP_012481291.1\|3562270_3563416_-\|lytic-murein-transglycosylase-B	unknown	unknown	gnl\|CDD\|274066
NZ_CP049956.1\|WP_005414515.1\|3578319_3578580_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049956.1\|WP_049461447.1\|3566747_3568823_-\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|274573
NZ_CP049956.1\|WP_005411075.1\|3568826_3569312_-\|rod-shape-determining-protein-MreD	unknown	unknown	gnl\|CDD\|225444

Protein	Function_ID	Function_description	E-value
NZ_CP049956.1\|WP_062605601.1\|3579058_3579481_+\|low-affinity-iron-permease-family-protein	gnl\|CDD\|377225	pfam04120, Iron_permease, Low affinity iron permease.	3.88036e-63
NZ_CP049956.1\|WP_049461445.1\|3565638_3566751_-\|rod-shape-determining-protein-RodA	gnl\|CDD\|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	1.02094e-144
NZ_CP049956.1\|WP_005411083.1\|3577668_3578121_+\|nucleoside-deaminase	gnl\|CDD\|238612	cd01285, nucleoside_deaminase, Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protein synthesis. Other members of the family are guanine deaminases which deaminate guanine to xanthine as part of the utilization of guanine as a nitrogen source.	3.60475e-42
NZ_CP049956.1\|WP_165711003.1\|3559693_3560905_-\|D-alanyl-D-alanine-carboxypeptidase	gnl\|CDD\|224600	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane].	8.06815e-150
NZ_CP049956.1\|WP_165711006.1\|3573145_3573781_-\|HAD-family-hydrolase	gnl\|CDD\|223620	COG0546, Gph, Predicted phosphatases [General function prediction only].	5.96885e-30
NZ_CP049956.1\|WP_080354109.1\|3558286_3559345_+\|lipid-A-deacylase-LpxR-family-protein	gnl\|CDD\|378338	pfam09982, DUF2219, Uncharacterized protein conserved in bacteria (DUF2219). This domain, found in various hypothetical bacterial proteins, has no known function.	1.71762e-109
NZ_CP049956.1\|WP_005411067.1\|3557656_3557935_-\|YbeD-family-protein	gnl\|CDD\|179161	PRK00907, PRK00907, hypothetical protein; Provisional.	1.56476e-63
NZ_CP049956.1\|WP_165711002.1\|3556958_3557669_-\|lipoyl(octanoyl)-transferase-LipB	gnl\|CDD\|237681	PRK14342, PRK14342, lipoyl(octanoyl) transferase LipB.	2.49826e-139
NZ_CP049956.1\|WP_165711004.1\|3561005_3562274_-\|septal-ring-lytic-transglycosylase-RlpA-family-protein	gnl\|CDD\|223868	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane].	2.32976e-51
NZ_CP049956.1\|WP_005411085.1\|3578655_3578991_+\|hypothetical-protein	gnl\|CDD\|212083	cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent dopamine transporter 1; solute-binding domain. DAT1 (also called DAT), is a plasma membrane transport protein that functions at the dopaminergic synapses to transport dopamine from the extracellular space back into the presynaptic nerve terminal. Human DAT1 is encoded by the SLC6A3 gene, and is expressed in the brain. DAT1 may play a role in diseases or disorders related to dopaminergic neurons, including attention-deficit hyperactivity disorder (ADHD), Tourette syndrome, Parkinson's disease, alcoholism, drug abuse, schizophrenia, extraversion, and risky behavior. This subgroup belongs to the solute carrier 6 (SLC6) transporter family.	0.00280065
NZ_CP049956.1\|WP_005411078.1\|3571941_3572880_+\|carbohydrate-kinase-family-protein	gnl\|CDD\|238917	cd01942, ribokinase_group_A, Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.	1.16177e-116
NZ_CP049956.1\|WP_005411082.1\|3576826_3577588_-\|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE	gnl\|CDD\|234689	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE.	5.68803e-138
NZ_CP049956.1\|WP_033834551.1\|3564407_3565502_-\|rod-shape-determining-protein-RodA	gnl\|CDD\|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	3.06609e-141
NZ_CP049956.1\|WP_005411077.1\|3570611_3571658_-\|rod-shape-determining-protein	gnl\|CDD\|237562	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional.	0
NZ_CP049956.1\|WP_062605605.1\|3574627_3576556_-\|M1-family-metallopeptidase	gnl\|CDD\|341062	cd09599, M1_LTA4H, Peptidase M1 family including Leukotriene A4 hydrolase catalytic domain. This model represents the N-terminal catalytic domain of leukotriene A4 hydrolase (LTA4H; E.C. 3.3.2.6) and the close homolog cold-active aminopeptidase (Colwellia psychrerythraea-type peptidase; ColAP), both members of the aminopeptidase M1 family. LTA4H is a bifunctional enzyme, possessing an aminopeptidase as well as an epoxide hydrolase activity. The two activities occupy different, but overlapping sites. The activity and physiological relevance of the aminopeptidase is poorly understood while the epoxide hydrolase converts leukotriene A4 (LTA4) into leukotriene B4 (LTB4), a potent chemotaxin that is fundamental to the inflammatory response of mammals. It accepts a variety of substrates, including some opioid, di- and tripeptides, as well as chromogenic aminoacyl-p-nitroanilide derivatives. The aminopeptidase activity of LTA4H is possibly involved in the processing of peptides related to inflammation and host defense. Kinetic analysis shows that LTA4H hydrolyzes arginyl tripeptides with high efficiency and specificity, indicating its function as an arginyl aminopeptidase. Thermodynamic characterization using different biophysical methods shows that structurally distinct inhibitors of the LTA4H occupy different regions of the binding site; while some (RB202, ARM1 and SC57461A) bind to the hydrophobic hydrolase side, both bestatin and captopril are located at the hydrophilic peptidase side. LTB4H overexpression is associated with different pathological conditions and diseases such as cystic fibrosis, coronary heart disease, sepsis, shock, connective tissue disease, and chronic obstructive pulmonary disease. It is also overexpressed in certain human cancers, and has been identified as a functionally important target for mediating anticancer properties of resveratrol, a well-known red wine polyphenolic compound with cancer chemopreventive activity.	0
NZ_CP049956.1\|WP_012481291.1\|3562270_3563416_-\|lytic-murein-transglycosylase-B	gnl\|CDD\|274066	TIGR02282, Membrane-bound_lytic_murein_transglycosylase_B, lytic murein transglycosylase B. This family consists of lytic murein transglycosylases (murein hydrolases) in the family of MltB, which is a membrane-bound lipoprotein in Escherichia coli. The N-terminal lipoprotein modification motif is conserved in about half the members of this family. The term Slt35 describes a naturally occurring soluble fragment of MltB. Members of this family never contain the putative peptidoglycan binding domain described by pfam01471, which is associated with several classes of bacterial cell wall lytic enzymes. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	5.42047e-138
NZ_CP049956.1\|WP_049461447.1\|3566747_3568823_-\|penicillin-binding-protein-2	gnl\|CDD\|274573	TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_CP049956.1\|WP_005411075.1\|3568826_3569312_-\|rod-shape-determining-protein-MreD	gnl\|CDD\|225444	COG2891, MreD, Cell shape-determining protein [Cell envelope biogenesis, outer membrane].	7.1233e-30

>NZ_CP049956.1|WP_005411075.1|3568826_3569312_-|rod-shape-determining-protein-MreD
MSRLRDNPWVLPASLVVALLLGLLPLPALLQPLRPYWLALVLAYWVIETPERVGLGIAFASGVVADLLYGGVLGEQALRLVMLAFILQRFRARIRFFPMSQQMLAIGGLLFNDRIVSALVHILVGEPTLPWSYWWAPLLGMGLWPLVFVLLDAVRFGKRGR
>NZ_CP049956.1|WP_049461447.1|3566747_3568823_-|penicillin-binding-protein-2
MIPRRQVKNPHAEAEQFRRRAALGFLGVLVCLLGLGGWYFKLQVLDHDVYATRSEANRIKPRPVVPGRGMIYDRNGRLLAENVPAFRLDVTPDKVKDMDATLEGLAKIISISPEELEAFNKSRKARRKFLPVTLKLRMSDEEMARFAVDRWRFPGVELEPYLTRRYPYGDLFAHIIGYVGRVDDKDLEILGEGNAALTHIGKSGLERYYEQQLRGKVGYEQVETNVQGRAIRTIGRVAAQSGADLRLSIDADLQRAMVAAFGDQEGSAVAMDPRTGEVLAMVSLPSYDPNLFVNGISHADFKALNENPSRPQFNRLVLGGVAPGSTLKPLIGLAGLDSGVRRPEDKVLSTGMFYLPGTSRGWGDAHRGGHGWTDLRKSIAESVNTYYYKLALDLGIERFDHYMEYYGFGQPTGIDLTGEIGGILPSPAYKRKTRKEAWYPGDTVNISIGQGDWKVTPLQLARGVSALADGQLRTPHLVIQQRDGFDSDWTATPPGESKPVSPNPNNVQAVREGMMATMRPGGSGWRVAVGAPYVMAGKTGTAQVISRKGTAAVNPKSLPMHLRHRALFVGFAPVENPVIAIAVAVEGGGYGGSAAAPIARKVFDAYLLGKMPEGMQPLDSERGTTAIGATAFDNEDAGARQAGDLAAAQLGEHPVQVGAPAPEPAPAPQPGTPAAAAAPATPRPTVAEPAR
>NZ_CP049956.1|WP_049461445.1|3565638_3566751_-|rod-shape-determining-protein-RodA
MKVLLRWAGDMLRRFFSTLDWVLCLALGALMVIGLATLKSAGGDGLVMAQGARFAVGMAALWGISRVPILRIRSATPMIYAISMIPLLAVFVLGTGKYGRQWLDLKFFYLQPAELLKVSLPMMVAWYLHKMPLPPRFNTVLVALIIIGVPTGLVMLQPDFGTGVLIAASGVFVLLLAGLPWWWVGLGVGGVAAVAPVAWFWLLRPYQKDRIMMFLDPEMDALGAGWNIIQSKIAIGSGGFDGKGWGEGSQSHLNFIPEQTTDFAFSVLSEEFGWMGVALVLTLYLVVIGRCLWIASQSRDSYSRLLAGATGLAFFVYVLVNGGMISGLLPVVGVPMPLISYGGTSAVSLLAGFGLVMAVRSHNPVHGGYG
>NZ_CP049956.1|WP_033834551.1|3564407_3565502_-|rod-shape-determining-protein-RodA
MEWKRLLGGCREVARTIDLPLLIALLILMGAGLAVLHSVSGPVAGQAARFAGGLASMWLLSRVSLLRLRAWTPAIYALSMLPLMAVYVIGTGKYGQRWLNLGVFYLQPSELLKLSLPLMMAWYLHRQPLPPSPRTVLTTTVLIGVPAVLILMQPNLGTATLVTASGVFALLLAGLHWGWVATGATGLAVAAPLAWFGLLRQYQKDRVLTFLDPSADPLGTGWNILQSRIAIGSGGWDGRGWGQGTQATLDFLPEYTTDFAFSVLAEEFGWIGVATVFALYLFVVGRCLWIAVHARDTHARLLAGSLGLAFFVYVLVNGGMISGLLPVVGIPMPLISYGGTSAVSLLAGIGLVMAVRGHRPVHGG
>NZ_CP049956.1|WP_012481291.1|3562270_3563416_-|lytic-murein-transglycosylase-B
MIRRTLACMLTLGLVACATQPKSPPSSPQASSTPRQPATKAHGPAEAAPEATAATAPPVDLTPVPFEVARARFIADTAKRYGLKPEQISSVLDQAQVRQPIIAAMSRPAERVKPWNEYRPMFISKARIDGGRAFLAEHRAELDRVQQRTGVPAEVIVAIIGVETSYGKNAGSHRVLDALYTLAFYYPRSGDPAKLEREVRRELFFRDELAKLFELGREEKLDITTLKGSYAGAMGMGQFMPSSYLDYAVDGNGDGRRDLFNSYDDVFSSIANYFVKKGGWVRGGQVAVPATLAPGREEFNPTEWMPTWSLADLAQRGYQPSTPVQPGATATPITLEGSTGKQYWLGFQNYYAITRYNLSKMYAMAVFQLSQAIAGQELPPA
>NZ_CP049956.1|WP_165711004.1|3561005_3562274_-|septal-ring-lytic-transglycosylase-RlpA-family-protein
MNIRWLVPSLIVFALAACSSAPKKPATAGHGGKSSGTLVQGRGSRPAHCPEGSPYAAAKEDLSTRGNYTAGGLYKPGVRDSTPDYIPNVACIPEPEVTAEERSAIGNKSPYVVLGKSYKVLDDTHDYVERGTASYYGAKFHGRLTSNREVYDMYQFTAAHKTLPLPSFARVTNLDNGESVIVRVNDRGPFHDGRVVDLSYAAAVRLGITQRGTGNVEVRALQPGESNLMAQKPSRRERRAAEAAAATAVASARPVPAPRASTDSDIDRLVNRLPTDGAPARGQPATTRGVASTAPDVAVSSLPPSAPVVRTSAPAPAVVASTAPRAVAPAPVRAAAAAPSLSQQMVGAVMVQVASFSNRDNANRAMGQLSAAGIVGATISDIAAGGRTLFRLRVPASDHASAAELAGRIAGLGLGSPQIVKD
>NZ_CP049956.1|WP_165711003.1|3559693_3560905_-|D-alanyl-D-alanine-carboxypeptidase
MNFRSAATALAATLVVGLASAQTPLPTPATPAPAAAPATVATPPAPAPSVSKAWVLMDYATGQVLAGENIHEQLAPASITKVMTSYVIAAEVKNGKVRADDQVMMSERAWREGGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAAKIGMKDSHFVNAHGLTAQGHHSTAYDLALLGRAMVRDYPETYAYNKIKEFQVGNIKQPNRNLLLWRDGSVDGIKTGHTSEAGYCLMSSAQRGDQRLIAVVLGGESEKQRADDSLALLNWGFRFFETHRLYEPGKAVAEHKVWKGTTDKVQLGVAQPMLVSVPRGRYNDLKPSIDVPKTLEAPFTAGQQIGTVKVTLDGKVVAEAPLVAVAAVEQAGFFKRLWDSFWMWWESE
>NZ_CP049956.1|WP_080354109.1|3558286_3559345_+|lipid-A-deacylase-LpxR-family-protein
MRSVAALGLAGLLASALPLAAQAAEQCGPDAMRDHPPQINFRVDNDLFGGRHQDQGYTNGALLTLVSPNLVDYTDDPCLPRMARWVNQYLEGLHPGRFEQQNMIFSIGQGIFTPTDFSRRDLIEDDRPYAGVLIANFGFNARSGDRLQTTQLTLGVVGPWAQGKQVQNAVHEVLGDEKFKGWDNQLHNEPLFMLTHERMRRWPGDASVNADGWGWDAISHYGGSIGNLETKANLGGEVRFGWKLPDDFGSTPLRPAGENTAPTRSGRPNGWSWHLFATSDAAWVIRDITLDGNTFRNSHSVDKRHVVAYGGYGVAVMYGRWKFAAARYHSTREFNGQREAPVFGSFTISRSL
>NZ_CP049956.1|WP_005411067.1|3557656_3557935_-|YbeD-family-protein
MEIKSDNPDHGFQFPGQFELSAMGPANRGLEHELPRLLLAAGIDVVNERISWKHSSNGKYVSVRIVFKAESREQYDLAHQALRDHPEVKWTL
>NZ_CP049956.1|WP_165711002.1|3556958_3557669_-|lipoyl(octanoyl)-transferase-LipB
MDAVADSCPAEAAPEDRAPRPALVRDLGRQAYEPVWRAMQRFTDQRSDTDADELWVVEHDPVFTLGQAGKDEHVLAPGDIPVLHVDRGGQVTYHGPGQIVVYPLLRLPRLGIGVRDYVCRIEQAIIDTLGEWNIGAERREGAPGVYVGGAKIAALGIRVRRGCTFHGLAFNVAMDLEPFHRINPCGYQGLQVTSVVDLSGPSGMEAVKPVLLDHLARQFGLLLQHTPELPDLSAAA
>NZ_CP049956.1|WP_005411077.1|3570611_3571658_-|rod-shape-determining-protein
MFKKLRGMFSNDLSIDLGTANTLIYVRGQGIVLNEPSVVAVRQDRAIGGTRSVAAVGAEAKQMLGRTPGHITTIRPMKDGVIADFTYTEAMLKHFIKKVHKSRVLRPSPRVLVCVPAGSTQVERRAIKESAEEAGARDVYLIEEPMAAAIGAGMPVTEARGSMVIDIGGGTTEVAVISLNGIVYSASVRIGGDRFDESITNYVRRNHGMLIGEATAERIKVELGCAYPQAEVQELEISGRNLAEGVPKMIKISSNEVLEALHEPLSGIVSAVKLALEQTPPELCADVAERGIVLTGGGALLRDLDRLISEETGLHVQVADDPLTCVARGGGRALELVDMHGNEFFAPE
>NZ_CP049956.1|WP_005411078.1|3571941_3572880_+|carbohydrate-kinase-family-protein
MSALICGSLAFDTIMVFPDQFKNHILPDKVHILNVSFLVPRMRREFGGCAGNIAYNLHLLGGQPIPMGTVGSDFGPYREYFEGLGIDLSRVRVIDELFTPQAFITTDHDNNQITAFHPGAMMRSYENHVRGVPGVTLGLVGPDGREGMIQNAQEFHEDGIPFIFDPGQAMPLFNGPELRAFIDQADYVVVNDYESNLLQERTGWDEKEIVSRVKAYITTRGPKGAVIHTPEKSYDIPPAHERRVVDPTGCGDAFRAGLIYGIQKGYDWLTIGRMGNLMGALKVEHPGTQNQRFTFDEFNEQFKQQFGYALGA
>NZ_CP049956.1|WP_165711006.1|3573145_3573781_-|HAD-family-hydrolase
MVAVKVATGSAVHALSAIRHWVFDMDGTLTVAVHDFAAIRRALEIAAEEDILDHIAALPDAPAQAKRAWLLDHERALAEDALPAPGAVKLLRALSAAGCRLGILTRNDHALAKLTLEAIGVGALFDDADIIGRDEAVPKPSPDGLQQHLRRWGIGAAHAVMVGDRAYDLECGRAAGTHTVLVNLPENPWPGSADWHFADCRALLAAWQQKG
>NZ_CP049956.1|WP_062605607.1|3573768_3574500_-|hypothetical-protein
MKRLILLTACTLALAACSNPEEERKAQEAAAAAAQAQKEAKAEDVAKQYDMAVAAQDWERARLHGASLLDQYKDTAAAERIAAGFDEVKAKGDAARDLRRMQGLWQYNQIPVGIKGNQVSAQIYSKERVDVDGSGAKPVQLVFRDHPEWKRHAYLVLQAGDFRCPQCTVKVTVDDGKPVPMAAWRPKTDEAIALFITDQKALWKLARKGKSISIEFPVKAGGTRTAVFETGGVDASRMPQWWQ
>NZ_CP049956.1|WP_062605605.1|3574627_3576556_-|M1-family-metallopeptidase
MRNPLMLLPLAVALAAGCSQEAAAPAAAPTAAKAPAAPVNAENRSHDESSYAEPDKVVIKDIALDLKLDFDQKQIGGTATYTLEWKQKDARQLVLDTRELTVSKVEAVAADGARSPLKFELAAADKVFGSKLTIEAPEQPAKVEVTYHTAPTASGLQWLAPSMTEGKKLPFMFSQSQAIHARSWVPLQDTPSVRFTYSAHVVSRPDVMVLMSADNDPKAARDGDYTFKMPQPIPSYLLAIAAGDLVFEPISGRSGVWAEPTMVNKAAKEFEDTEKMIGAAEKLYGEYRWGRYDMLVLPPSFPFGGMENPRLTFATPTVIVGDKSLVSLVAHELAHSWSGNLVTNASWKDIWLNEGFTTYVQGRITEALYGKEMAEMEKQIDQTDLLAEVKDMSPADQALALPPLNERDPDEALSQVAYVKGSWFLEFLEQRFGRETFDPFLRGWFDDHAFQSANTDQFVEYLKKNLLPKNPSAVTEAELKAWLDEPGIPAFAAKAQSRNFSSVDTARIAFASAGTVPSSQVIADWSTQEWVRFIDGLGATQPLDKLATLDKAFHFTGTPNGEIAMRWYPLAIRSGYEQANEGAAAFIERVGRRKLILPIYAELVKTPKGLELAKQAFEKAKPGYHPITTTSVQDMLAKAEAK
>NZ_CP049956.1|WP_005411082.1|3576826_3577588_-|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE
MSESPYKAGTTHFGFRDVAAKDKQKLVGQVFTSVARNYDLMNDLMSLGVHRAWKRYYVATAQVKPGDRVLDLAGGTGDIAALLKERVGAEGSVVLGDINAGMLSVGRDRLTNRGLVLGLDYVQCNAEALPFPDNSFDLVTIAFGLRNVTDKDAGLREMYRVLKVGGQARVLEFSEVTADWFKPIYDFHSFKILPKLGKLFANDSDSYQYLAESIRKHPPQDELKAMMGQAGFERCHYKNLTGGIVSIHSGYKL
>NZ_CP049956.1|WP_005411083.1|3577668_3578121_+|nucleoside-deaminase
MITTPDYQALLQTAIAEARQGLAEGGVPIGAALYHNDGRLLGCGHNRRVQEGDPSVHGETDAFRKAGRQRRYQDTIMVTTLAPCWYCSGLVRQFNIGTVVVGESRTFQGGIDWLRENGVNVIDLDSQECVDLLGGFIAQHPEIWNEDIGE
>NZ_CP049956.1|WP_005414515.1|3578319_3578580_+|hypothetical-protein
MCAHAVRPAPDSILDPIRERLQRQYALHRRGALFWTAYQRMQLELVRRHPLDHERLCNAMATLAEDLGAVEHAQLIGHANASSTSR
>NZ_CP049956.1|WP_005411085.1|3578655_3578991_+|hypothetical-protein
MHAEVPTIPPVINVDAELDHWRRQHAEGALPHNSFGSYVPWIKFACDSLITQPRASEAERDEMFQTQYALQIMPRLSEAQAREFVDRCWQHVYQSSPVRSLQAPRLQRMRA
>NZ_CP049956.1|WP_062605601.1|3579058_3579481_+|low-affinity-iron-permease-family-protein
MKVRNLFNTIAKKAAAATGSPWTFLAAVAIVVIWGISGPVFGFNDTWQLVINTGTTIITFLMVFLIQHTQNADTAAMQIKLDELIRATAEANNELLDLEELDETRLEEIRAEYEQMAREAGDALARVRACHAARRDDEAV

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP049956_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049956_10

3573023-3573141

Orphan

Consensus_repeat	Method
GTCGACCTTGGTCGACACTGCCGACCAGCGGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP049956_10

>merge|NZ_CP049956|10|3573023-3573141|CRISPRCasFinder
GTCGACCTTGGTCGACACTGCCGACCAGCGGCCAGCACTACCCCTTCTGCCAGGCCGCCAGCCTGGCCACGGGTGTTCTGGTAGGCGTCGACCTTGGTCGACACTGCCGGCCAGCGGCC

>NZ_CP049956|10|9|3573023-3573141|CRISPRCasFinder
GTCGACCTTGGTCGACACTGCCGACCAGCGGCC	AGCACTACCCCTTCTGCCAGGCCGCCAGCCTGGCCACGGGTGTTCTGGTAGGC
GTCGACCTTGGTCGACACTGCCGGCCAGCGGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049956.1\|WP_062605601.1\|3579058_3579481_+\|low-affinity-iron-permease-family-protein	unknown	unknown	gnl\|CDD\|377225
NZ_CP049956.1\|WP_049461445.1\|3565638_3566751_-\|rod-shape-determining-protein-RodA	unknown	unknown	gnl\|CDD\|274033
NZ_CP049956.1\|WP_005411083.1\|3577668_3578121_+\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|238612
NZ_CP049956.1\|WP_005411085.1\|3578655_3578991_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|212083
NZ_CP049956.1\|WP_165711003.1\|3559693_3560905_-\|D-alanyl-D-alanine-carboxypeptidase	unknown	unknown	gnl\|CDD\|224600
NZ_CP049956.1\|WP_165711006.1\|3573145_3573781_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|223620
NZ_CP049956.1\|WP_005414515.1\|3578319_3578580_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049956.1\|WP_165711004.1\|3561005_3562274_-\|septal-ring-lytic-transglycosylase-RlpA-family-protein	unknown	unknown	gnl\|CDD\|223868
NZ_CP049956.1\|WP_005411078.1\|3571941_3572880_+\|carbohydrate-kinase-family-protein	unknown	unknown	gnl\|CDD\|238917
NZ_CP049956.1\|WP_165711005.1\|3569308_3570490_-\|rod-shape-determining-protein-MreC	unknown	unknown	gnl\|CDD\|237560
NZ_CP049956.1\|WP_005411082.1\|3576826_3577588_-\|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE	unknown	unknown	gnl\|CDD\|234689
NZ_CP049956.1\|WP_033834551.1\|3564407_3565502_-\|rod-shape-determining-protein-RodA	unknown	unknown	gnl\|CDD\|274033
NZ_CP049956.1\|WP_012481298.1\|3579564_3580965_-\|multidrug-efflux-RND-transporter-outer-membrane-subunit-SmeF	unknown	unknown	gnl\|CDD\|182103
NZ_CP049956.1\|WP_062605607.1\|3573768_3574500_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049956.1\|WP_062605605.1\|3574627_3576556_-\|M1-family-metallopeptidase	unknown	unknown	gnl\|CDD\|341062
NZ_CP049956.1\|WP_012481291.1\|3562270_3563416_-\|lytic-murein-transglycosylase-B	unknown	unknown	gnl\|CDD\|274066
NZ_CP049956.1\|WP_049461447.1\|3566747_3568823_-\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|274573
NZ_CP049956.1\|WP_005411077.1\|3570611_3571658_-\|rod-shape-determining-protein	unknown	unknown	gnl\|CDD\|237562
NZ_CP049956.1\|WP_005411088.1\|3581057_3584180_-\|multidrug-efflux-RND-transporter-permease-subunit-SmeE	unknown	unknown	gnl\|CDD\|273335
NZ_CP049956.1\|WP_005411075.1\|3568826_3569312_-\|rod-shape-determining-protein-MreD	unknown	unknown	gnl\|CDD\|225444

Protein	Function_ID	Function_description	E-value
NZ_CP049956.1\|WP_049461445.1\|3565638_3566751_-\|rod-shape-determining-protein-RodA	gnl\|CDD\|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	1.02094e-144
NZ_CP049956.1\|WP_005411083.1\|3577668_3578121_+\|nucleoside-deaminase	gnl\|CDD\|238612	cd01285, nucleoside_deaminase, Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protein synthesis. Other members of the family are guanine deaminases which deaminate guanine to xanthine as part of the utilization of guanine as a nitrogen source.	3.60475e-42
NZ_CP049956.1\|WP_005411088.1\|3581057_3584180_-\|multidrug-efflux-RND-transporter-permease-subunit-SmeE	gnl\|CDD\|273335	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. Proteins scoring above the trusted cutoff (1000) form a tight clade within the RND (Resistance-Nodulation-Cell Division) superfamily. Proteins scoring greater than the noise cutoff (100) appear to form a larger clade, cleanly separated from more distant homologs that include cadmium/zinc/cobalt resistance transporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate].	0
NZ_CP049956.1\|WP_165711003.1\|3559693_3560905_-\|D-alanyl-D-alanine-carboxypeptidase	gnl\|CDD\|224600	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane].	8.06815e-150
NZ_CP049956.1\|WP_165711006.1\|3573145_3573781_-\|HAD-family-hydrolase	gnl\|CDD\|223620	COG0546, Gph, Predicted phosphatases [General function prediction only].	5.96885e-30
NZ_CP049956.1\|WP_062605601.1\|3579058_3579481_+\|low-affinity-iron-permease-family-protein	gnl\|CDD\|377225	pfam04120, Iron_permease, Low affinity iron permease.	3.88036e-63
NZ_CP049956.1\|WP_165711004.1\|3561005_3562274_-\|septal-ring-lytic-transglycosylase-RlpA-family-protein	gnl\|CDD\|223868	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane].	2.32976e-51
NZ_CP049956.1\|WP_005411078.1\|3571941_3572880_+\|carbohydrate-kinase-family-protein	gnl\|CDD\|238917	cd01942, ribokinase_group_A, Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.	1.16177e-116
NZ_CP049956.1\|WP_165711005.1\|3569308_3570490_-\|rod-shape-determining-protein-MreC	gnl\|CDD\|237560	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional.	4.54363e-87
NZ_CP049956.1\|WP_005411082.1\|3576826_3577588_-\|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE	gnl\|CDD\|234689	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE.	5.68803e-138
NZ_CP049956.1\|WP_033834551.1\|3564407_3565502_-\|rod-shape-determining-protein-RodA	gnl\|CDD\|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	3.06609e-141
NZ_CP049956.1\|WP_012481298.1\|3579564_3580965_-\|multidrug-efflux-RND-transporter-outer-membrane-subunit-SmeF	gnl\|CDD\|182103	PRK09837, PRK09837, Cu(I)/Ag(I) efflux RND transporter outer membrane protein.	2.77998e-115
NZ_CP049956.1\|WP_005411085.1\|3578655_3578991_+\|hypothetical-protein	gnl\|CDD\|212083	cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent dopamine transporter 1; solute-binding domain. DAT1 (also called DAT), is a plasma membrane transport protein that functions at the dopaminergic synapses to transport dopamine from the extracellular space back into the presynaptic nerve terminal. Human DAT1 is encoded by the SLC6A3 gene, and is expressed in the brain. DAT1 may play a role in diseases or disorders related to dopaminergic neurons, including attention-deficit hyperactivity disorder (ADHD), Tourette syndrome, Parkinson's disease, alcoholism, drug abuse, schizophrenia, extraversion, and risky behavior. This subgroup belongs to the solute carrier 6 (SLC6) transporter family.	0.00280065
NZ_CP049956.1\|WP_062605605.1\|3574627_3576556_-\|M1-family-metallopeptidase	gnl\|CDD\|341062	cd09599, M1_LTA4H, Peptidase M1 family including Leukotriene A4 hydrolase catalytic domain. This model represents the N-terminal catalytic domain of leukotriene A4 hydrolase (LTA4H; E.C. 3.3.2.6) and the close homolog cold-active aminopeptidase (Colwellia psychrerythraea-type peptidase; ColAP), both members of the aminopeptidase M1 family. LTA4H is a bifunctional enzyme, possessing an aminopeptidase as well as an epoxide hydrolase activity. The two activities occupy different, but overlapping sites. The activity and physiological relevance of the aminopeptidase is poorly understood while the epoxide hydrolase converts leukotriene A4 (LTA4) into leukotriene B4 (LTB4), a potent chemotaxin that is fundamental to the inflammatory response of mammals. It accepts a variety of substrates, including some opioid, di- and tripeptides, as well as chromogenic aminoacyl-p-nitroanilide derivatives. The aminopeptidase activity of LTA4H is possibly involved in the processing of peptides related to inflammation and host defense. Kinetic analysis shows that LTA4H hydrolyzes arginyl tripeptides with high efficiency and specificity, indicating its function as an arginyl aminopeptidase. Thermodynamic characterization using different biophysical methods shows that structurally distinct inhibitors of the LTA4H occupy different regions of the binding site; while some (RB202, ARM1 and SC57461A) bind to the hydrophobic hydrolase side, both bestatin and captopril are located at the hydrophilic peptidase side. LTB4H overexpression is associated with different pathological conditions and diseases such as cystic fibrosis, coronary heart disease, sepsis, shock, connective tissue disease, and chronic obstructive pulmonary disease. It is also overexpressed in certain human cancers, and has been identified as a functionally important target for mediating anticancer properties of resveratrol, a well-known red wine polyphenolic compound with cancer chemopreventive activity.	0
NZ_CP049956.1\|WP_012481291.1\|3562270_3563416_-\|lytic-murein-transglycosylase-B	gnl\|CDD\|274066	TIGR02282, Membrane-bound_lytic_murein_transglycosylase_B, lytic murein transglycosylase B. This family consists of lytic murein transglycosylases (murein hydrolases) in the family of MltB, which is a membrane-bound lipoprotein in Escherichia coli. The N-terminal lipoprotein modification motif is conserved in about half the members of this family. The term Slt35 describes a naturally occurring soluble fragment of MltB. Members of this family never contain the putative peptidoglycan binding domain described by pfam01471, which is associated with several classes of bacterial cell wall lytic enzymes. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	5.42047e-138
NZ_CP049956.1\|WP_049461447.1\|3566747_3568823_-\|penicillin-binding-protein-2	gnl\|CDD\|274573	TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_CP049956.1\|WP_005411077.1\|3570611_3571658_-\|rod-shape-determining-protein	gnl\|CDD\|237562	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional.	0
NZ_CP049956.1\|WP_005411075.1\|3568826_3569312_-\|rod-shape-determining-protein-MreD	gnl\|CDD\|225444	COG2891, MreD, Cell shape-determining protein [Cell envelope biogenesis, outer membrane].	7.1233e-30

>NZ_CP049956.1|WP_005411078.1|3571941_3572880_+|carbohydrate-kinase-family-protein
MSALICGSLAFDTIMVFPDQFKNHILPDKVHILNVSFLVPRMRREFGGCAGNIAYNLHLLGGQPIPMGTVGSDFGPYREYFEGLGIDLSRVRVIDELFTPQAFITTDHDNNQITAFHPGAMMRSYENHVRGVPGVTLGLVGPDGREGMIQNAQEFHEDGIPFIFDPGQAMPLFNGPELRAFIDQADYVVVNDYESNLLQERTGWDEKEIVSRVKAYITTRGPKGAVIHTPEKSYDIPPAHERRVVDPTGCGDAFRAGLIYGIQKGYDWLTIGRMGNLMGALKVEHPGTQNQRFTFDEFNEQFKQQFGYALGA
>NZ_CP049956.1|WP_005411077.1|3570611_3571658_-|rod-shape-determining-protein
MFKKLRGMFSNDLSIDLGTANTLIYVRGQGIVLNEPSVVAVRQDRAIGGTRSVAAVGAEAKQMLGRTPGHITTIRPMKDGVIADFTYTEAMLKHFIKKVHKSRVLRPSPRVLVCVPAGSTQVERRAIKESAEEAGARDVYLIEEPMAAAIGAGMPVTEARGSMVIDIGGGTTEVAVISLNGIVYSASVRIGGDRFDESITNYVRRNHGMLIGEATAERIKVELGCAYPQAEVQELEISGRNLAEGVPKMIKISSNEVLEALHEPLSGIVSAVKLALEQTPPELCADVAERGIVLTGGGALLRDLDRLISEETGLHVQVADDPLTCVARGGGRALELVDMHGNEFFAPE
>NZ_CP049956.1|WP_165711005.1|3569308_3570490_-|rod-shape-determining-protein-MreC
MPPYAGPPVASRSGDAASPLRLLAYLALAITLIVLDDQAGWLARLREQANSLVQPVWALAGLPGKLGNQVKDSAASHTQLVTENRELRNQLLLANARLTRLQTAALDNAQLRELLNVAERSGLDVQLAPILDIDLDPVKQRLVLDAGSREGVHVGQAVIDAGGLMGQVISVTGGTSTVLLLTDPDHAVPVTVARNGVRLIVYGRGDTLELRDIPLSAGVEVGDEIVTSGLGGRFPAGFPVGTITGLRPDDTHAFLVGELKPAAQLDRGRDVLLLRPGAAIRIPPELRLQLEETTPGGPATGATVPAGAAPATTTPAPVSSPVVPAAGRQQPSSQARTVAPASSLDPAAPVVPAAGRQQPSSQTRTVAPASSLDPAAPVVPAAGRQSTTPEAQR
>NZ_CP049956.1|WP_005411075.1|3568826_3569312_-|rod-shape-determining-protein-MreD
MSRLRDNPWVLPASLVVALLLGLLPLPALLQPLRPYWLALVLAYWVIETPERVGLGIAFASGVVADLLYGGVLGEQALRLVMLAFILQRFRARIRFFPMSQQMLAIGGLLFNDRIVSALVHILVGEPTLPWSYWWAPLLGMGLWPLVFVLLDAVRFGKRGR
>NZ_CP049956.1|WP_049461447.1|3566747_3568823_-|penicillin-binding-protein-2
MIPRRQVKNPHAEAEQFRRRAALGFLGVLVCLLGLGGWYFKLQVLDHDVYATRSEANRIKPRPVVPGRGMIYDRNGRLLAENVPAFRLDVTPDKVKDMDATLEGLAKIISISPEELEAFNKSRKARRKFLPVTLKLRMSDEEMARFAVDRWRFPGVELEPYLTRRYPYGDLFAHIIGYVGRVDDKDLEILGEGNAALTHIGKSGLERYYEQQLRGKVGYEQVETNVQGRAIRTIGRVAAQSGADLRLSIDADLQRAMVAAFGDQEGSAVAMDPRTGEVLAMVSLPSYDPNLFVNGISHADFKALNENPSRPQFNRLVLGGVAPGSTLKPLIGLAGLDSGVRRPEDKVLSTGMFYLPGTSRGWGDAHRGGHGWTDLRKSIAESVNTYYYKLALDLGIERFDHYMEYYGFGQPTGIDLTGEIGGILPSPAYKRKTRKEAWYPGDTVNISIGQGDWKVTPLQLARGVSALADGQLRTPHLVIQQRDGFDSDWTATPPGESKPVSPNPNNVQAVREGMMATMRPGGSGWRVAVGAPYVMAGKTGTAQVISRKGTAAVNPKSLPMHLRHRALFVGFAPVENPVIAIAVAVEGGGYGGSAAAPIARKVFDAYLLGKMPEGMQPLDSERGTTAIGATAFDNEDAGARQAGDLAAAQLGEHPVQVGAPAPEPAPAPQPGTPAAAAAPATPRPTVAEPAR
>NZ_CP049956.1|WP_049461445.1|3565638_3566751_-|rod-shape-determining-protein-RodA
MKVLLRWAGDMLRRFFSTLDWVLCLALGALMVIGLATLKSAGGDGLVMAQGARFAVGMAALWGISRVPILRIRSATPMIYAISMIPLLAVFVLGTGKYGRQWLDLKFFYLQPAELLKVSLPMMVAWYLHKMPLPPRFNTVLVALIIIGVPTGLVMLQPDFGTGVLIAASGVFVLLLAGLPWWWVGLGVGGVAAVAPVAWFWLLRPYQKDRIMMFLDPEMDALGAGWNIIQSKIAIGSGGFDGKGWGEGSQSHLNFIPEQTTDFAFSVLSEEFGWMGVALVLTLYLVVIGRCLWIASQSRDSYSRLLAGATGLAFFVYVLVNGGMISGLLPVVGVPMPLISYGGTSAVSLLAGFGLVMAVRSHNPVHGGYG
>NZ_CP049956.1|WP_033834551.1|3564407_3565502_-|rod-shape-determining-protein-RodA
MEWKRLLGGCREVARTIDLPLLIALLILMGAGLAVLHSVSGPVAGQAARFAGGLASMWLLSRVSLLRLRAWTPAIYALSMLPLMAVYVIGTGKYGQRWLNLGVFYLQPSELLKLSLPLMMAWYLHRQPLPPSPRTVLTTTVLIGVPAVLILMQPNLGTATLVTASGVFALLLAGLHWGWVATGATGLAVAAPLAWFGLLRQYQKDRVLTFLDPSADPLGTGWNILQSRIAIGSGGWDGRGWGQGTQATLDFLPEYTTDFAFSVLAEEFGWIGVATVFALYLFVVGRCLWIAVHARDTHARLLAGSLGLAFFVYVLVNGGMISGLLPVVGIPMPLISYGGTSAVSLLAGIGLVMAVRGHRPVHGG
>NZ_CP049956.1|WP_012481291.1|3562270_3563416_-|lytic-murein-transglycosylase-B
MIRRTLACMLTLGLVACATQPKSPPSSPQASSTPRQPATKAHGPAEAAPEATAATAPPVDLTPVPFEVARARFIADTAKRYGLKPEQISSVLDQAQVRQPIIAAMSRPAERVKPWNEYRPMFISKARIDGGRAFLAEHRAELDRVQQRTGVPAEVIVAIIGVETSYGKNAGSHRVLDALYTLAFYYPRSGDPAKLEREVRRELFFRDELAKLFELGREEKLDITTLKGSYAGAMGMGQFMPSSYLDYAVDGNGDGRRDLFNSYDDVFSSIANYFVKKGGWVRGGQVAVPATLAPGREEFNPTEWMPTWSLADLAQRGYQPSTPVQPGATATPITLEGSTGKQYWLGFQNYYAITRYNLSKMYAMAVFQLSQAIAGQELPPA
>NZ_CP049956.1|WP_165711004.1|3561005_3562274_-|septal-ring-lytic-transglycosylase-RlpA-family-protein
MNIRWLVPSLIVFALAACSSAPKKPATAGHGGKSSGTLVQGRGSRPAHCPEGSPYAAAKEDLSTRGNYTAGGLYKPGVRDSTPDYIPNVACIPEPEVTAEERSAIGNKSPYVVLGKSYKVLDDTHDYVERGTASYYGAKFHGRLTSNREVYDMYQFTAAHKTLPLPSFARVTNLDNGESVIVRVNDRGPFHDGRVVDLSYAAAVRLGITQRGTGNVEVRALQPGESNLMAQKPSRRERRAAEAAAATAVASARPVPAPRASTDSDIDRLVNRLPTDGAPARGQPATTRGVASTAPDVAVSSLPPSAPVVRTSAPAPAVVASTAPRAVAPAPVRAAAAAPSLSQQMVGAVMVQVASFSNRDNANRAMGQLSAAGIVGATISDIAAGGRTLFRLRVPASDHASAAELAGRIAGLGLGSPQIVKD
>NZ_CP049956.1|WP_165711003.1|3559693_3560905_-|D-alanyl-D-alanine-carboxypeptidase
MNFRSAATALAATLVVGLASAQTPLPTPATPAPAAAPATVATPPAPAPSVSKAWVLMDYATGQVLAGENIHEQLAPASITKVMTSYVIAAEVKNGKVRADDQVMMSERAWREGGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAAKIGMKDSHFVNAHGLTAQGHHSTAYDLALLGRAMVRDYPETYAYNKIKEFQVGNIKQPNRNLLLWRDGSVDGIKTGHTSEAGYCLMSSAQRGDQRLIAVVLGGESEKQRADDSLALLNWGFRFFETHRLYEPGKAVAEHKVWKGTTDKVQLGVAQPMLVSVPRGRYNDLKPSIDVPKTLEAPFTAGQQIGTVKVTLDGKVVAEAPLVAVAAVEQAGFFKRLWDSFWMWWESE
>NZ_CP049956.1|WP_165711006.1|3573145_3573781_-|HAD-family-hydrolase
MVAVKVATGSAVHALSAIRHWVFDMDGTLTVAVHDFAAIRRALEIAAEEDILDHIAALPDAPAQAKRAWLLDHERALAEDALPAPGAVKLLRALSAAGCRLGILTRNDHALAKLTLEAIGVGALFDDADIIGRDEAVPKPSPDGLQQHLRRWGIGAAHAVMVGDRAYDLECGRAAGTHTVLVNLPENPWPGSADWHFADCRALLAAWQQKG
>NZ_CP049956.1|WP_062605607.1|3573768_3574500_-|hypothetical-protein
MKRLILLTACTLALAACSNPEEERKAQEAAAAAAQAQKEAKAEDVAKQYDMAVAAQDWERARLHGASLLDQYKDTAAAERIAAGFDEVKAKGDAARDLRRMQGLWQYNQIPVGIKGNQVSAQIYSKERVDVDGSGAKPVQLVFRDHPEWKRHAYLVLQAGDFRCPQCTVKVTVDDGKPVPMAAWRPKTDEAIALFITDQKALWKLARKGKSISIEFPVKAGGTRTAVFETGGVDASRMPQWWQ
>NZ_CP049956.1|WP_062605605.1|3574627_3576556_-|M1-family-metallopeptidase
MRNPLMLLPLAVALAAGCSQEAAAPAAAPTAAKAPAAPVNAENRSHDESSYAEPDKVVIKDIALDLKLDFDQKQIGGTATYTLEWKQKDARQLVLDTRELTVSKVEAVAADGARSPLKFELAAADKVFGSKLTIEAPEQPAKVEVTYHTAPTASGLQWLAPSMTEGKKLPFMFSQSQAIHARSWVPLQDTPSVRFTYSAHVVSRPDVMVLMSADNDPKAARDGDYTFKMPQPIPSYLLAIAAGDLVFEPISGRSGVWAEPTMVNKAAKEFEDTEKMIGAAEKLYGEYRWGRYDMLVLPPSFPFGGMENPRLTFATPTVIVGDKSLVSLVAHELAHSWSGNLVTNASWKDIWLNEGFTTYVQGRITEALYGKEMAEMEKQIDQTDLLAEVKDMSPADQALALPPLNERDPDEALSQVAYVKGSWFLEFLEQRFGRETFDPFLRGWFDDHAFQSANTDQFVEYLKKNLLPKNPSAVTEAELKAWLDEPGIPAFAAKAQSRNFSSVDTARIAFASAGTVPSSQVIADWSTQEWVRFIDGLGATQPLDKLATLDKAFHFTGTPNGEIAMRWYPLAIRSGYEQANEGAAAFIERVGRRKLILPIYAELVKTPKGLELAKQAFEKAKPGYHPITTTSVQDMLAKAEAK
>NZ_CP049956.1|WP_005411082.1|3576826_3577588_-|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE
MSESPYKAGTTHFGFRDVAAKDKQKLVGQVFTSVARNYDLMNDLMSLGVHRAWKRYYVATAQVKPGDRVLDLAGGTGDIAALLKERVGAEGSVVLGDINAGMLSVGRDRLTNRGLVLGLDYVQCNAEALPFPDNSFDLVTIAFGLRNVTDKDAGLREMYRVLKVGGQARVLEFSEVTADWFKPIYDFHSFKILPKLGKLFANDSDSYQYLAESIRKHPPQDELKAMMGQAGFERCHYKNLTGGIVSIHSGYKL
>NZ_CP049956.1|WP_005411083.1|3577668_3578121_+|nucleoside-deaminase
MITTPDYQALLQTAIAEARQGLAEGGVPIGAALYHNDGRLLGCGHNRRVQEGDPSVHGETDAFRKAGRQRRYQDTIMVTTLAPCWYCSGLVRQFNIGTVVVGESRTFQGGIDWLRENGVNVIDLDSQECVDLLGGFIAQHPEIWNEDIGE
>NZ_CP049956.1|WP_005414515.1|3578319_3578580_+|hypothetical-protein
MCAHAVRPAPDSILDPIRERLQRQYALHRRGALFWTAYQRMQLELVRRHPLDHERLCNAMATLAEDLGAVEHAQLIGHANASSTSR
>NZ_CP049956.1|WP_005411085.1|3578655_3578991_+|hypothetical-protein
MHAEVPTIPPVINVDAELDHWRRQHAEGALPHNSFGSYVPWIKFACDSLITQPRASEAERDEMFQTQYALQIMPRLSEAQAREFVDRCWQHVYQSSPVRSLQAPRLQRMRA
>NZ_CP049956.1|WP_062605601.1|3579058_3579481_+|low-affinity-iron-permease-family-protein
MKVRNLFNTIAKKAAAATGSPWTFLAAVAIVVIWGISGPVFGFNDTWQLVINTGTTIITFLMVFLIQHTQNADTAAMQIKLDELIRATAEANNELLDLEELDETRLEEIRAEYEQMAREAGDALARVRACHAARRDDEAV
>NZ_CP049956.1|WP_012481298.1|3579564_3580965_-|multidrug-efflux-RND-transporter-outer-membrane-subunit-SmeF
MEVIPMKSASLFLSIAAVLALAGCSTLVPKNTAVAPAIPAQWPAEAAQGEVADVAAVGWRDFFTDARLQQVIDQSLQNNRDLRVAVLNVERARGQYRVQRADRVPGVAVTGQMQRQGTDAGVNEQFTAGVGVAEFELDLFGRVRNLSEAALQQYFAVAANRRNAQLSLVAETATAWLTYGADAQRLKIADATLKTYEDSLRLAEARHERGGSSALELTQTRTLVETARTDAARLRGQLAQDRNALALLAGGQLDPALLPDSIEPQLLALAPPPAGLPSDVLLQRPDIMAAEHQLLAANANIGAARAAFFPSISLTGSIGSGSSELSNLFDSGTRVWSFLPKITLPIFQGGKLRANLAIANADRDIALAQYEKSIQVGFRETADALALNVSLDEQVSSQQRLVEAAEQANRLSQARYDAGLDSFVTLLDARRTAYNAQQTQLQAQLAQQANRITLYKVMGGGWHERS
>NZ_CP049956.1|WP_005411088.1|3581057_3584180_-|multidrug-efflux-RND-transporter-permease-subunit-SmeE
MARFFIDRPIFAWVIAIIIMLAGGLALFKLPVSMYPNVAPPAVEISATYPGASAKVVEDSVTQIIEQNMKGLDGLIYFSSNSSSNGQATITLTFESGTNPDIAQVQVQNKLQLAMPLLPQEVQRQGINVAKSSSGFLNVIAFVSENGSMDANDIADYVGSNVVDRLSRVPGVGNIQVFGGKYAMRIWLDPNKLHTYGLSVAEVTAAIKAQNAQVAIGQLGGAPSIKGQQLNATINAQSRLQTPEQFRNIIVRGAQDGAELRLGDVARVELGAESYDFVTRYNGQPASGLAVTLATGANALDTAAGVNAALEDMKSFFPAGLKAEVPYDTTPFVRVSIKGVVQTLIEAIVLVFVVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAMLGFSVNMLTMFAMVLAIGLLVDDAIVVVENVERIMSEEGLSPLEATRKSMGQITGALVGIGLVLSAVFVPMAFMSGSTGVIYRQFSATIVSAMALSVLVAIVLTPALCATMLKPLKKGEHHVAHRGLAGRFFNGFNRGFDRTSESYQRGVRGIIHRPWRFMGIVAALFVLMGVLFVRLPSSFLPNEDQGVLMALVQAPVGATQERTLESIAALENHFLQNEKDAVDSVFSVQGFSFAGMGQNAGMAFVKLKDWSERDANNGVMPITGRAMAALGQIKDAFIFAFPPPAIPELGTASGYTFFLKDNSGQGHEALVAARNQLLGLAAGSKKLANVRPNGQEDTPQFRIDIDAAKATSLGLSIDQINGTLAAAWGSSYIDDFVDRGRVKRVFVQADQPFRMVPEDFDLWSVKNDKGEMVPFSAFATKHWDYGSPRLERYNGVSAMEIQGEPAPGVASGDAMAEIEQLAKQLPAGFGIEWTAMSYQERQAGSQTPLLYTLSLMIVFLCLAAMYESWSVPTAVLLAAPLGILGAVLANTFKGLERDIYFQVAMLTTVGLTSKNAILIVEFAKENLEKGAGLIESIMHAVRDRLRPIVMTSLAFGMGVVPLAISTGAGSGAKQAIGTGVLGGMIVGTVLGVFFVPLFFVVVQRVFKRKSTT

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP049956_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049956_11

4217122-4217225

Orphan

Consensus_repeat	Method
GTGGTTGCCGGCCAGCGGCCGGCACTAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP049956_11

>merge|NZ_CP049956|11|4217122-4217225|CRISPRCasFinder
GTGGTTGCCGGCCAGCGGCCGGCACTACCTGACGTCACATCCACGCATGGCGTGGATCTACTGCCAGGCCGATGAAGTGGTTGCCGGCCAGCGGCCGGCACTAC

>NZ_CP049956|11|10|4217122-4217225|CRISPRCasFinder
GTGGTTGCCGGCCAGCGGCCGGCACTAC	CTGACGTCACATCCACGCATGGCGTGGATCTACTGCCAGGCCGATGAA
GTGGTTGCCGGCCAGCGGCCGGCACTAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049956.1\|WP_005414912.1\|4205728_4206367_-\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	unknown	unknown	gnl\|CDD\|234637
NZ_CP049956.1\|WP_049460637.1\|4211758_4213186_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379826
NZ_CP049956.1\|WP_024957786.1\|4216530_4217106_+\|manganese-efflux-pump-MntP-family-protein	unknown	unknown	gnl\|CDD\|224882
NZ_CP049956.1\|WP_049418085.1\|4224835_4226449_+\|molecular-chaperone-DnaJ	unknown	unknown	gnl\|CDD\|365959
NZ_CP049956.1\|WP_165711148.1\|4220875_4223023_-\|S46-family-peptidase	unknown	unknown	gnl\|CDD\|371067
NZ_CP049956.1\|WP_005411661.1\|4213431_4215375_+\|acetate--CoA-ligase	unknown	unknown	gnl\|CDD\|234677
NZ_CP049956.1\|WP_005411656.1\|4207090_4207342_+\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	unknown	unknown	gnl\|CDD\|225170
NZ_CP049956.1\|WP_005414921.1\|4223150_4224839_+\|molecular-chaperone-HscC	unknown	unknown	gnl\|CDD\|212677
NZ_CP049956.1\|WP_012481650.1\|4237340_4238087_+\|glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|181635
NZ_CP049956.1\|WP_005411655.1\|4206406_4207006_-\|4'-phosphopantetheinyl-transferase-superfamily-protein	unknown	unknown	gnl\|CDD\|225002
NZ_CP049956.1\|WP_012481649.1\|4234538_4235450_-\|glycine--tRNA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|236473
NZ_CP049956.1\|WP_099485166.1\|4235533_4237369_+\|type-II/IV-secretion-system-protein	unknown	unknown	gnl\|CDD\|225363
NZ_CP049956.1\|WP_099485165.1\|4232375_4234451_-\|glycine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234925
NZ_CP049956.1\|WP_049460647.1\|4238137_4239049_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049956.1\|WP_005411662.1\|4215454_4216120_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP049956.1\|WP_005411659.1\|4209936_4211598_-\|MHS-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340927
NZ_CP049956.1\|WP_049471204.1\|4207414_4208182_-\|exodeoxyribonuclease-III	unknown	unknown	gnl\|CDD\|197320
NZ_CP049956.1\|WP_049460643.1\|4226468_4230326_-\|translocation/assembly-module-TamB	unknown	unknown	gnl\|CDD\|225463
NZ_CP049956.1\|WP_080356711.1\|4230322_4232119_-\|outer-membrane-protein-assembly-factor	unknown	unknown	gnl\|CDD\|223801
NZ_CP049956.1\|WP_100438178.1\|4208313_4209723_-\|coniferyl-aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143451

Protein	Function_ID	Function_description	E-value
NZ_CP049956.1\|WP_005414912.1\|4205728_4206367_-\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	gnl\|CDD\|234637	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG.	7.2268e-83
NZ_CP049956.1\|WP_049460637.1\|4211758_4213186_-\|hypothetical-protein	gnl\|CDD\|379826	pfam16331, TolA_bind_tri, TolA binding protein trimerisation. This is the N-terminal domain of the YbgF protein. YbgF binds to TolA. This domain mediates trimerisation.	8.96528e-05
NZ_CP049956.1\|WP_024957786.1\|4216530_4217106_+\|manganese-efflux-pump-MntP-family-protein	gnl\|CDD\|224882	COG1971, COG1971, Predicted membrane protein [Function unknown].	5.76094e-59
NZ_CP049956.1\|WP_049418085.1\|4224835_4226449_+\|molecular-chaperone-DnaJ	gnl\|CDD\|365959	pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.	4.31369e-07
NZ_CP049956.1\|WP_165711148.1\|4220875_4223023_-\|S46-family-peptidase	gnl\|CDD\|371067	pfam10459, Peptidase_S46, Peptidase S46. Dipeptidyl-peptidase 7 (DPP-7) is the best characterized member of this family. It is a serine peptidase that is located on the cell surface and is predicted to have two N-terminal transmembrane domains.	0
NZ_CP049956.1\|WP_005411661.1\|4213431_4215375_+\|acetate--CoA-ligase	gnl\|CDD\|234677	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional.	0
NZ_CP049956.1\|WP_005411656.1\|4207090_4207342_+\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	gnl\|CDD\|225170	COG2261, COG2261, Predicted membrane protein [Function unknown].	3.33495e-10
NZ_CP049956.1\|WP_005414921.1\|4223150_4224839_+\|molecular-chaperone-HscC	gnl\|CDD\|212677	cd10235, HscC_like_NBD, Nucleotide-binding domain of Escherichia coli HscC and similar proteins. This subfamily includes Escherichia coli HscC (also called heat shock cognate protein C, Hsc62, or YbeW) and the the putative DnaK-like protein Escherichia coli ECs0689. It belongs to the heat shock protein 70 (Hsp70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, Hsp70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Two genes in the vicinity of the HscC gene code for potential cochaperones: J-domain containing proteins, DjlB/YbeS and DjlC/YbeV. HscC and its co-chaperone partners may play a role in the SOS DNA damage response. HscC does not appear to require a NEF.	0
NZ_CP049956.1\|WP_012481650.1\|4237340_4238087_+\|glutamine-amidotransferase	gnl\|CDD\|181635	PRK09065, PRK09065, glutamine amidotransferase; Provisional.	1.56126e-132
NZ_CP049956.1\|WP_005411655.1\|4206406_4207006_-\|4'-phosphopantetheinyl-transferase-superfamily-protein	gnl\|CDD\|225002	COG2091, Sfp, Phosphopantetheinyl transferase [Coenzyme metabolism].	7.7921e-31
NZ_CP049956.1\|WP_012481649.1\|4234538_4235450_-\|glycine--tRNA-ligase-subunit-alpha	gnl\|CDD\|236473	PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated.	0
NZ_CP049956.1\|WP_099485166.1\|4235533_4237369_+\|type-II/IV-secretion-system-protein	gnl\|CDD\|225363	COG2804, PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion].	0
NZ_CP049956.1\|WP_099485165.1\|4232375_4234451_-\|glycine--tRNA-ligase-subunit-beta	gnl\|CDD\|234925	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated.	0
NZ_CP049956.1\|WP_005411662.1\|4215454_4216120_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.47352e-58
NZ_CP049956.1\|WP_005411659.1\|4209936_4211598_-\|MHS-family-MFS-transporter	gnl\|CDD\|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.89027e-120
NZ_CP049956.1\|WP_049471204.1\|4207414_4208182_-\|exodeoxyribonuclease-III	gnl\|CDD\|197320	cd09086, ExoIII-like_AP-endo, Escherichia coli exonuclease III (ExoIII) and Neisseria meningitides NExo-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases. This subfamily includes Escherichia coli ExoIII, Neisseria meningitides NExo,and related proteins. These are ExoIII family AP endonucleases and they belong to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. AP endonucleases participate in the DNA base excision repair (BER) pathway. AP sites are one of the most common lesions in cellular DNA. During BER, the damaged DNA is first recognized by DNA glycosylase. AP endonucleases then catalyze the hydrolytic cleavage of the phosphodiester bond 5' to the AP site, and this is followed by the coordinated actions of DNA polymerase, deoxyribose phosphatase, and DNA ligase. If left unrepaired, AP sites block DNA replication, and have both mutagenic and cytotoxic effects. AP endonucleases can carry out a variety of excision and incision reactions on DNA, including 3'-5' exonuclease, 3'-deoxyribose phosphodiesterase, 3'-phosphatase, and occasionally, nonspecific DNase activities. Different AP endonuclease enzymes catalyze the different reactions with different efficiencies. Many organisms have two AP endonucleases, usually one is the dominant AP endonuclease, the other has weak AP endonuclease activity. For example, Neisseria meningitides Nape and NExo, and exonuclease III (ExoIII) and endonuclease IV (EndoIV) in Escherichia coli. NExo and ExoIII are found in this subfamily. NExo is the non-dominant AP endonuclease. It exhibits strong 3'-5' exonuclease and 3'-deoxyribose phosphodiesterase activities. Escherichia coli ExoIII is an active AP endonuclease, and in addition, it exhibits double strand (ds)-specific 3'-5' exonuclease, exonucleolytic RNase H, 3'-phosphomonoesterase and 3'-phosphodiesterase activities, all catalyzed by a single active site. Class II AP endonucleases have been classified into two families, designated ExoIII and EndoIV, based on their homology to the Escherichia coli enzymes ExoIII and endonuclease IV (EndoIV). This subfamily belongs to the ExoIII family; the EndoIV family belongs to a different superfamily.	6.99984e-136
NZ_CP049956.1\|WP_049460643.1\|4226468_4230326_-\|translocation/assembly-module-TamB	gnl\|CDD\|225463	COG2911, COG2911, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP049956.1\|WP_080356711.1\|4230322_4232119_-\|outer-membrane-protein-assembly-factor	gnl\|CDD\|223801	COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane].	2.53908e-147
NZ_CP049956.1\|WP_100438178.1\|4208313_4209723_-\|coniferyl-aldehyde-dehydrogenase	gnl\|CDD\|143451	cd07133, ALDH_CALDH_CalB, Coniferyl aldehyde dehydrogenase-like. Coniferyl aldehyde dehydrogenase (CALDH, EC=1.2.1.68) of Pseudomonas sp. strain HR199 (CalB) which catalyzes the NAD+-dependent oxidation of coniferyl aldehyde to ferulic acid, and similar sequences, are present in this CD.	0

>NZ_CP049956.1|WP_024957786.1|4216530_4217106_+|manganese-efflux-pump-MntP-family-protein
MSPISILLIGFAMSTDAFAAAIGKGAAMRRPVFRDALRAGIIFGVIEAITPIIGWLLGRAALQYVEAFDHWIAFGLLGALGIHMIYNGLRPDSAEEDEDPSQHHGFWKLALTGFATSIDAMAVGIGLAFMDVHIGVMAAVIGLCTLTMVTVGIMLGRVLGSMVGKRAEIIGGVILVIIGATILYEHLHGVG
>NZ_CP049956.1|WP_005411662.1|4215454_4216120_+|response-regulator-transcription-factor
MTTLLIADDHPLFREALRGAVQRVIPGVQLFEADSVEALYALADQHNDADLVLMDLNMPGAQGFNALVHMRSLHPHLPVVVVSAREEATVMRRALDHGALGFIPKSADSDTIGHALGTILDGETWAPPEAHNVPPTEREEREVGQRLRELTPQQFRVLQMLGAGRLNKQIAYDLNVSEATIKAHVTAILRKLGVTNRTQAVLMAGKLAIDDDAIVLPPEED
>NZ_CP049956.1|WP_005411661.1|4213431_4215375_+|acetate--CoA-ligase
MADIYPVDPQFAAKARIDKTSYEQQYQASVTDPDGFWGKAAERLQWMRKPTRIKNVSYDLSDFHIKWFEDGELNASVNCLDRQLETRGDKTALLFEPDGPDAPAQHVTYRELYERTCRLGNALRNLGVKKGDRVTIYLPMIVDAAVAMLACARIGAIHSVVFGGFAPNSIADRVSDCQSKLIITADEGLRGGRRIPLKANVDAALKLPGTNTVETVLVVRHTGGAVDMQAPRDRWFHDVVDSQPATCEPERMNAEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAYTHEAVFDLREDDIYWCTADVGWVTGHSYIVYGPLANGATSLMFEGVPNYPDTSRFWNVIDKHKVTIFYTAPTAIRALMREGEEPVKKTSRASLRLLGSVGEPINPEAWRWYYEVVGDSRCPIVDTWWQTETGGILISPLAGAMDLKPGSATLPFFGVQPALVNADGEIQDGPTEGNLIIRDSWPGQMRTVYGDHQRFIDTYFRTYPGSYFTGDGCRRDEDGYYWITGRVDDVINVSGHRIGTAEVESALVSHPKVAEAAVVGFPHDVKGQGIYAYVTLVAEEAPSDELHKELIAWVRKEIGPIATPDHLQWAPGLPKTRSGKIMRRILRKIAENAPDQLGDTSTLADPSVVASLVDERKVR
>NZ_CP049956.1|WP_049460637.1|4211758_4213186_-|hypothetical-protein
MSHRTLKAVRTPLAACLLVALVAPGMAFAETAKEKALEARVAELERQVQLLLSSQQQQQTQISQTQQAVTEVRTVQAGQKPVASVPAGKQPIQVTTITPGAAPGTTVKIGGFIKADFLATQTSDGQLADDATGRSLYLPGQTPVEGAGGSGKRSGTDFNAHAKFSRFNLGIDNVSESGNKAGAFFEMDFFGNSLGNQTATNTYGVTLRHAYMYWNNWMAGQTWSNFMDAASLPEAVDFVGPTDGVIFVRQAQVRYTQGGFSVALENPETTTLTGTRNPVTGAWTNASANSDRGSLPDLTLRYGWKGNWGTFGVGGIVRQLKVDNQATGAKADKVAGGLTLGGKWVMGDSDSLHYQLTGGEGIARYIGLGITADSAYDVARDELNPTGVLAGYVGWRHAFSPKLRTNLIYARSDYDNDSILGPLVTKSVQSIRGNIFYSPLPKVDIGAELMYGRREVENGNKGDITRLQFTTKYSF
>NZ_CP049956.1|WP_005411659.1|4209936_4211598_-|MHS-family-MFS-transporter
MSSTPSTAHKAGTLTKGHKKVIFASSLGTVFEWYDFFLYGSLAAIIAKQFFSGVNETTGMIFALLAFAAGFFVRPFGAAFFGSLGDRIGRKYTFLVTILIMGISTFLVGVLPNYASIGFAAPVILIILRLAQGLAMGGEYGGAATYVAEHAPDDKRGLYTSFIQCTATLGLFMSLLIILACRYFLGNEAFEAWGWRIPFLVSILLLGVSVWIRLQLSESPLFQQMKSEGKGSKTPFRDSLKGGNLKLMLLVLLGAAAGQAVVWYGGQFYALFFLSSMLKVDATTSYLLIAAALALGVPFFIFFGWLSDRIGRKKIILAGCLLAAITYIPIFKGLTHFANPAIEEARASSPALVVADPNTCSFQFDPVGLRKFTSSCDVATAALTKAGVPYDVQPAAAGSLAMVNVGSASVTSYEAAGLTKEEGKAKADAFGAELKTALTTAGYPAKADGARINIAGTIFMLWLLVLYVTMVYGPIAAYLVELFPTRIRYTSMSLPYHIGNGWFGGFLPAISFALVAGTGNLYYGLWYPIIIALMSVVIGGLFLRETKDVDITK
>NZ_CP049956.1|WP_100438178.1|4208313_4209723_-|coniferyl-aldehyde-dehydrogenase
MTTTTPEDLPALLHTLRSAWQSQRPSLDQREADLRRLREALKPRLDEMAQAIAEDFGHRAHVESKLADGMSVLSAIDHLRRHLRRWSKPQRASAGWKLWPARAQLRPTPLGVVGVISPWNYPVTLALVPLATAIAAGNHVLLKPSEHTPRTSAFLADLLASVFPPDRVAVVQGGADVAEAVSSLPLDHLLFTGSTAVGRKVMAAAAEHLVPVTLELGGKSPAIVCRDFPLDKAAARLATGKWFNAGQTCIAPDYVLIDTVRQREFVQALQQQVRERYGDFSDADDYTRIINEGQYRRLQGYLAQARERGVPVIPLAQVDEARADRERLLVPTVVLDPPDDLDLMREEIFGPILPVRAYPDLDAALADVLSRDRPLALYPFSHDTATVERILRQVVAGGVTVNDTLLHFAADGLPFGGVGASGMGAYHGRAGFDAMSKRLPVLWQSRWAASDRLRPPYSKIAGLLKLLLR
>NZ_CP049956.1|WP_049471204.1|4207414_4208182_-|exodeoxyribonuclease-III
MKIASWNVNSLNVRLPHLEQWLREFGPDIVGIQETKLEDHKFPDSALIAAGYRSVFAGQKTYNGVALLSRESAQDVQIGIPGFEDEQKRVIAGTFGDLRVINLYVVNGQDIGTDKYDYKLRWLEAVHAWIAEELQRHPKLIVMGDFNIAPDARDVHDPEVWNDNHVLTSTAERGALNKLLQLGLHDGFRLHNDEAGTFSWWDYRAAGFRRNLGLRIDLTLVSDALKGSAVASGIDREPRTWERPSDHAPAWVQIG
>NZ_CP049956.1|WP_005411656.1|4207090_4207342_+|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein
MGIIIWLIVGGIVGWLASIIMKRDAQQGIILNIVVGIVGALISGWLFGGGINEAITIRTFLFSLIGAVILLAIVNLFTRKSIR
>NZ_CP049956.1|WP_005411655.1|4206406_4207006_-|4'-phosphopantetheinyl-transferase-superfamily-protein
MSLPATLDGPWRFGPVTVWRRPHVPGQRGEPQARQVLAQALGTDPQTLPLVRDDKGRPELSGPLAHYGTGWSHSGEVLLVALGEGVRLGVDLELLRPRPRLLEIVRRFFHPQEVAWLERLDEADREHWFFRVWCVKEAILKAHGQGISFGLHRLQLAPGADGALHLRWCAPELGEAARWHLHEWQATGQFRAALAWYPH
>NZ_CP049956.1|WP_005414912.1|4205728_4206367_-|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG
MSEHPLPASVVATLEQGLASMGLDAALAPPLLRYLALLHRWNGTYNLTAIRDPQEMVTRHLLDSLAMQPFVADGSLADLGTGPGLPGIPLAIACPGLQVTLVESNGKKARFMREAVRQLGLGNARVAESRAEALDEAGRYDQLTARAMDTLAGIVRVGGHLLRPGGVLLAMKGVYPHEEIAELPAGWQVREVTPLSVPGLAGERHLVTVTGP
>NZ_CP049956.1|WP_165711148.1|4220875_4223023_-|S46-family-peptidase
MSSRKALPTALALGLTLAAGAHADEGMWMPTQLPELAKPLQAAGFKGNPADLANVTAPPLSAVVRAGGGTGSFVSADGLLLTNHHVAMGVIQYNSSPEHDLITGGFIARDRGDERPANPDFRVLVTVGFDKVTDQVLAQARGKTGRAYFDAVDAASKQIVAECEKDGSVRCSVANMYYGTDFYRIAQLELSDVRLVYAPPRAIGNYGDEIDNFMWPRHTGDFTLLRAYVGKDGKPAAYSKDNVPYQAPAHLQMSVEGPKEGDYAMLAGYPGITYRHRTAAEFAGQIDTVLPRRVSVFQQMIDTIEAASAKDAQARTRYASQLQSLKNNRKRAAGELEGLLRSDAKAQRAADETAMLAATDRKYQGDIKALLANLSQGAAVGERDLLLDQMTAQSQLLRSALLLERLRIESAKPDAQRESGFQQRDQAMIEGVLKQVQRRYAPEVEKALLTTLLTRYQQLPDAQRVAEFDAAFGRTPQQLAKALDTLYAGTQLGDEAQRLSRFAAAREGKALAADPLIAVAGPLVAAQLRIENESKTREGEQLRLRPAYMQALFAWRAKQGRAVYPDANRTLRISYGKVEALHPRDGVTYSPVTTVAGIVEKNTNAYPFDAPKPLLAAIAKGDFGSTADPALKTQTVNFLTNLDTTGGNSGSPVLNAKGELIGLNFDSNWESVSASWWFDPRYKRAVHVDMRYLRWLLAKVYPAPELLKEMGVPAQ
>NZ_CP049956.1|WP_005414921.1|4223150_4224839_+|molecular-chaperone-HscC
MIVGIDLGTTHSLIGVHSSDGPRLFPNAHGELLTPSVVSLDGDIVLVGAPARDRLISHPDQSVAHFKRWMGSNRETRLGDRVFRPEELSALVLRSLLADAEAVLGQKVEEAVISVPAYFSDAQRKATRAAGELAGIRVERLINEPTAAALSYGLQQREEDARVLVLDLGGGTFDVSILELFEGVVEVHASAGDNFLGGEDFLRVLEQALLAEQGLRAAMIAPGERAQLLRRLELFKRELSQQGSGHLQFNLEGRELDWQLDEARYAQLCDPLLQRMRAPIERAIRDARLKPEALDDIVLVGGAVRMPMISRLVTRMFGRLPLRHVNPDQAIAMGAAVAAGLKARDQSLRETVLTDVCPYTLGIQVCRRDASGQERGGYFHPIIQRNSVVPVSREDDFCPINDAQTQLVLDIYQGESPTVDRNIKLGEIRIPLKGKGPAQAKSVTARFTYDVNGLLQVEVTEHASGTRHELILEQNPGLLSPDEIQQRLAALQSLKVHPRDDQPNLAVVARLGRLYEECLDQRDTLQRWLSQFHAALESQDLARIERHREELTHAMDSLEIDA
>NZ_CP049956.1|WP_049418085.1|4224835_4226449_+|molecular-chaperone-DnaJ
MRRGLDVLELDEDADERAIKRAYARLLRVTRPDDDPVAFQHLHEAYQSALSWVKQRAQPLDIDQDKHALPPMQDPSLEPASRAHIDAIHAAIALDRQLEQEHGPYGHDPVRIVQTTPMPPADTGLDKVVEPSQSDPHGPDALPTAHALAPQPTLAPAGDGERSPLRSVDQMVAAILIRLAAAARGSDDDTTVPALETWLQAQPELWSLHDKPLIAASLLEQLREASPPLPREVVEHVASSFGWDDIGNGLDAEDLQRIVRRCDQAWMLTDAGRQRLAWHVSRLDTSIVRPDMRPVLDRLRRPRSRWRNLLESLPWSRPDITVLTLAALRYWPDRELPPGLSATQVAFWSRFGSRQDPLRSQVAALRAWLAGLLCGTICLVGVINSWPLASTEGGMTGGAKAALSLAIGTLLIPFGWYLICGLRMLISWQVNPVAAGSWRQVASLPVTVVVGAGLLLLFQHESFPDMSGILLARGLVFALWLVAFIGTTTQRQRLGMADHGALDRVSMIPGLIFPWLGLVIVLGYWARTQVLRRRSPQ
>NZ_CP049956.1|WP_049460643.1|4226468_4230326_-|translocation/assembly-module-TamB
MSTPAPTPNAPPPRVRFYRRRRFWAWSGVGVIGLVLLALLAVYWLLQTVAGRDVLLAQVVARLPVGASFTWDKVDGPVAGPLTLYNVDFRYDDIHFHAERAHLEPDLRPLLGRKLLLDKLELTNATLNLAKSDEPFKLPSWPDSLPQIEMPLAIQADAIAIDGFRISQANEPVIDISRVRGGIEIANGEFQAHKLVVDSDMGNFTAQGRYIPAKDYDTDVTVTAVLPAPRGRTAATVGLVARGDLSHMEVAVAGRAPKPLHAMLVFDGRTDPSWSASIRSDELDLALLSPALASSAIAPLALDFTAAGKGGNANLRGKVKQGDQELELAPSVVSLQDQVLKVSPLLVKGLGGEARLEGTADFSQEDQQKLNFSVVAHDLTYVPAPDPNTAGSAPVPVTLKEARFGLAGTLKAWAAIGRADVEREKQKAQLQFDVRGNDQAASIHQLQAQTPGGQLQVEGQVAWAPQLDWDAKATLKDFDPGYFVPGWNGRLSGNLASKGRQLPPPANAPPGTAGTLEATVDLPSLKGILRQRNLDAQGKFALQGAQGQGDLKLSLGSSRVTASGKVGDRLDIDARFEPLQLSDLLPGADGGLRGQVQVKGPRDAPDITADLVGNNLNWDGYGAESVSIKGHLPWRGDSGTLAVQGQQVNAGMLLERLNVDAQGSVSNLRLAAQTRNEMGAIELQGSVRQQGAQWRGELASLRIAPVKGDAWSLRAPAAFAINGSTYTLSEACLAAASSGALCAQANWPREGLVVRSDALPLALVQPWLPPQSGRRIYLRGDVSLDAQIRPRGNAWEGHVEVRSKEGGVRLGENRNTVGDTTRGELVRYDQFSLKLDMTPASIKGYLGMGFQGNGFVDARMQTGWEASAPLNGELYLNMSRLYWLELFSPDIVRPTGLIEGHVSLRGTRGQPSLGGDAQLSNFKGEFPALGLTFDQGKGSFVAQPDGSAKITAQANSGQGTLYVDGGLSWFGDAQPLQLKIHGENVLLSNTSELRIVANPNLGFTLAKAAMELRGTVHVPEADIDLERLDRGTSVSEDVVVLDPADPEESRTSPLDMDLTVSLGDKVKMTGFGLKGALTGKMQVWAKPGREMTANGGLEVSGRYKAYGQDLTITRGNLTWNYNAVSDPRINIRAERRIGDVTAGIDVTGRAQQPRADVWSEPAMSQSEALAYLVLGRSLTGASSDQAQQVNAASAALSAGSGLLASQLGAKLGLDDAGVSQSRALGGSVIGVGKYISPKLYVGYGVSLVGAGSVITLKYLLRRGFDVEVESSTVENRGSINWRREK
>NZ_CP049956.1|WP_080356711.1|4230322_4232119_-|outer-membrane-protein-assembly-factor
MLCRMQPKKYALPLMVLSLAATSVANARGTIDKVDIKGLDKGDDAAIIENIQESLSLYDTIGKEQGESRLEYLLSQAERQTRQALEPFGYYNPVIKVEAPREDEHVRVLIHVDKGTPVTVRREHIDITGPAMYDQYLQDDLAAFKPRKGQRFEHTQYEASKITITRRLAERGYFDADYTQRQVQITRADNAADIDLTWDSGRRYNMGPVRFEQDYFVDKLFDPLVYWEQGSYFHEGKLDRLRESLTKLDYFSVIDIQPRPDQADANGEVPVDVKLTRAKRTIYTAGLSYGSESGPGVRGGIERRFLNNRGHKMNTQLDYAQKRKSLVTSYRIPAFNWLDGWYTFAASAYDEQTDYIDLRNFKLIASRSGEINEHWTAIASINALRERWRYASGTEFTDAVYNTSTLVYPQMVADYVNVDDEMFPRKGISGTATMRAGVEGAGSDTSFVQANAVLRWYIPVGESNRLILRGEGGTTWTSDLVAMPPSLRYFAGGDRSIRGYAYREVGPRTPKPDKYALGAKNLVIGSAEYEHYFNGGPWGAAVFVDTGSAFDNTIDLHTGVGFGVRWKSPVGPVRVDIAHGLNNPDSQFQLYLNIGADL
>NZ_CP049956.1|WP_099485165.1|4232375_4234451_-|glycine--tRNA-ligase-subunit-beta
MSQLSPLLIELGTEELPVKALPGLAQAFFDGVVEGLRKRGVALELGDARPLSTPRRLAVLLPGVGLEQPEQHSEVLGPYLNIALDAEGQPTKALQGFAAKAGIDWTALEKTTDNKGERFVHRAVTPGASTASLLPEILREAIAAMPIPKPMRWGDHVWGFARPAHWLVLLHGANVVEAELFGLQAGRVSRGHRFHHDQAVSLAQPQDYVEALRAAFVLVDPSERRARIVAEVEAAAAKAGGSARITDDNLEQVVNLVEWPSAVLCSFEPAFLAVPQEALIETMEINQKFFPVLDAAGTLTEKFIGIANIESKNVAEVAKGYERVIRPRFADAKFFFDEDLKQGLVSMGEGLKTVTYQAKLGSVADKVARVAALAEVIAPQVGADAAQARRAAELAKNDLQSRMVNEFPELQGIAGRHYAVAGGESAEVALAIDEAYQPRFGGDDIALSPLGKVLAIAERVDTLAGGFAAGLKPTGNKDPFALRRNALGLARTIIESGFELDLRALLASANAGLAARNVQADVGELYDFILDRLKGYYSDKGVPVTHFNAVAELKPVSLYDFDRRLDAIGTFAALPEAEALAAANKRIRNILRKAEGDIPAQIDPALLQEDAERALAEAVTAAIDDTGASLHQKDYVAVLARLARLRPQVDAFFDGVMVNAEDPALRGNRLALLTMLGERLGKVAAIEHLSS
>NZ_CP049956.1|WP_012481649.1|4234538_4235450_-|glycine--tRNA-ligase-subunit-alpha
MSATPTVPITFQGLIQTLNQFWAQQGCVLIQPLDLEVGAGTFHPATFLRAIGPEGWNAAYVQPSRRPTDGRYGENPNRLQRYYQYQVAMKPAPDNIQQLYLDSLKALGIDPLVHDLRFVEDNWESPTLGAWGLGWEVWLNGMEVTQFTYFQQAGGLECRPVLGEITYGLERLCMYLQNCDNVYDLIWTYGPDGQPVTYGDVYHQNEVEQSTYNFEYADVEEMFHRFDACEREAQKLVEVNLPLPAYEQVMKASHTFNLLDARRAISVTERQRYILRVRALAQAVARAYYEQREKLGFPGAKKA
>NZ_CP049956.1|WP_099485166.1|4235533_4237369_+|type-II/IV-secretion-system-protein
MEHRLPAGTPGEADGVPLPWGRLHFEQIAAALTADGLVAEQDRERMRFSAQGARNASEVHPLVLLSNLKLAATGGGELTLERLTEWLAQRTGSRYLRIDPTRVDVAAVTALVSHAYARRHRFLPLAVDAERVLVATSEPLVQEWRRDLQHLTRRRIELAVVNPLDLHRYTMEFYGVTRSVRGARGDVRGEASTTLPSFEQLVELGRTGDVNADDQHIVHIVDWLLQYAYEQRASDIHLEPRREMGRMRFRIDGVLHKVFEVPPAVMTAVVSRIKVLGRMDLAERRRPQDGRIKTRSPGGREVEMRLSTMPTAFGEKCVMRIFDPDAAFKSIDQLGFSPQEAAGWNALVERPHGIVLVTGPTGSGKTTTLYSTLKRLATPDVNVCTVEDPIEMIAPEFNQMQVQANIDLDFASGVRTLLRQDPDIIMIGEIRDLETAQMAVQASLTGHLVLSTLHTNDAPSAVTRLLDLGVPHYLLASTLNGILAQRLVRTLCPHCKQPHSLGAADWAVLADSHAAYSDAATPCRPVGCLECRRTGFLGRIGLYELLPLGSRLRGQIRADMDLAGFTRAARAEGLRTLRQAGLEKVAQGLTTIEEVLSVLPPPDEPSPVPDP
>NZ_CP049956.1|WP_012481650.1|4237340_4238087_+|glutamine-amidotransferase
MNPAPFLILETGRPVPSLRRYGRFPHWIRVAAGLEEHETVVVDVEHGGALPDPHAFAGVLVTGSAAFVTDHADWSERSAAWLRQTAHDDLPVFGICYGHQLLAHALGGEVAYNPAGRESGTIELELQPQAAQDPLFQGLPQHFAAHATHLQTVLRAPDGAEVLARSPLDGCHAFRWGRQAWGVQFHPEFATHHMRGYVRARADCIGRHGGCARSIERAVSAAPLARQLLRRFVRQARLSSAQPVAKQG
>NZ_CP049956.1|WP_049460647.1|4238137_4239049_+|hypothetical-protein
MKEIRKLPASAGAQWLLDTFSLYRRAPLQLARIGLTWLLVSWVVTLLSTLIPGAAGMAVQLMTLAISPIMFGGMLYAVGEIDEGRPGLASHLLQPIRDHRVSHLLVPLAIQVLAVLLLGALLFLMIGREGFTAFSEVMTKMEEISRSGQQIKPDDAAALVANLPAKRIALWMLLVFLSAVALSLAMFTQPALVVFDKQSGMHALRLSLQGCIENIGAMIVFAALGLIAAFCMYILFVIVIQIAMLIGGPLAAAFIAQLVLTTVLMPLYVGAVYAAWKQMFVHRGSRAAPPIPTTPTSSDIFHA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP049956_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP049956_12

4834719-4834820

Orphan

Consensus_repeat	Method
GGTAGGTGCCGACCGTTGGTCGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP049956_12

>merge|NZ_CP049956|12|4834719-4834820|CRISPRCasFinder
GGTAGGTGCCGACCGTTGGTCGGCAGACCCCAATGCCCCGGTGGGTGCCAACCTTGGTTGGCACTCTTTACTGCCCTGGTGGGTGCCGACCGTTGGTCGGCA

>NZ_CP049956|12|11|4834719-4834820|CRISPRCasFinder
GGTAGGTGCCGACCGTTGGTCGGCA	GACCCCAATGCCCCGGTGGGTGCCAACCTTGGTTGGCACTCTTTACTGCCCT
GGTGGGTGCCGACCGTTGGTCGGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049956.1\|WP_024957100.1\|4831480_4831771_+\|DUF3247-family-protein	unknown	unknown	gnl\|CDD\|371627
NZ_CP049956.1\|WP_005407934.1\|4839961_4840891_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP049956.1\|WP_012479031.1\|4834830_4836039_-\|beta-ketoacyl-ACP-synthase-I	unknown	unknown	gnl\|CDD\|181184
NZ_CP049956.1\|WP_043033919.1\|4834032_4834716_+\|HAD-family-phosphatase	unknown	unknown	gnl\|CDD\|223710
NZ_CP049956.1\|WP_099524721.1\|4832273_4833338_+\|methyltransferase	unknown	unknown	gnl\|CDD\|225370
NZ_CP049956.1\|WP_043033923.1\|4828640_4829204_-\|DUF3016-domain-containing-protein	unknown	unknown	gnl\|CDD\|378666
NZ_CP049956.1\|WP_049395665.1\|4829448_4831437_+\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|236842
NZ_CP049956.1\|WP_165711234.1\|4827390_4828458_+\|alanine-racemase	unknown	unknown	gnl\|CDD\|143500
NZ_CP049956.1\|WP_005407938.1\|4844823_4845402_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NZ_CP049956.1\|WP_076739390.1\|4840887_4841679_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369777
NZ_CP049956.1\|WP_165711236.1\|4838164_4839076_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293825
NZ_CP049956.1\|WP_165711237.1\|4839214_4839853_-\|NAD(P)H-binding-protein	unknown	unknown	gnl\|CDD\|225462
NZ_CP049956.1\|WP_111173623.1\|4836744_4837815_+\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
NZ_CP049956.1\|WP_005407930.1\|4836038_4836554_-\|3-hydroxyacyl-[acyl-carrier-protein]-dehydratase-FabA	unknown	unknown	gnl\|CDD\|179953
NZ_CP049956.1\|WP_165711238.1\|4842500_4844342_-\|TonB-dependent-vitamin-B12-receptor	unknown	unknown	gnl\|CDD\|273802
NZ_CP049956.1\|WP_165711235.1\|4833334_4834036_+\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|211327
NZ_CP049956.1\|WP_065184091.1\|4841743_4842400_+\|phosphoglycolate-phosphatase	unknown	unknown	gnl\|CDD\|237310
NZ_CP049956.1\|WP_005407925.1\|4831853_4832117_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP049956.1\|WP_005412127.1\|4826107_4827412_+\|D-amino-acid-dehydrogenase	unknown	unknown	gnl\|CDD\|234819
NZ_CP049956.1\|WP_005407919.1\|4825478_4825958_-\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|183009

Protein	Function_ID	Function_description	E-value
NZ_CP049956.1\|WP_024957100.1\|4831480_4831771_+\|DUF3247-family-protein	gnl\|CDD\|371627	pfam11607, DUF3247, Protein of unknown function (DUF3247). This family of proteins is the protein product of the gene XC5848 from Xanthomonas campestris. The protein has no known function however its structure has been determined. The protein adopts a Lsm fold however differences with the fold were observed at the N-terminal and internal regions.	9.01894e-24
NZ_CP049956.1\|WP_005407934.1\|4839961_4840891_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	6.55775e-85
NZ_CP049956.1\|WP_012479031.1\|4834830_4836039_-\|beta-ketoacyl-ACP-synthase-I	gnl\|CDD\|181184	PRK07967, PRK07967, beta-ketoacyl-ACP synthase I.	0
NZ_CP049956.1\|WP_165711238.1\|4842500_4844342_-\|TonB-dependent-vitamin-B12-receptor	gnl\|CDD\|273802	TIGR01779, Vitamin_B12_transporter_BtuB, TonB-dependent vitamin B12 receptor. This model represents the TonB-dependent outer membrane receptor found in gamma proteobacteria responsible for translocating the cobalt-containing vitamin B12 (cobalamin). [Transport and binding proteins, Other, Transport and binding proteins, Porins].	0
NZ_CP049956.1\|WP_099524721.1\|4832273_4833338_+\|methyltransferase	gnl\|CDD\|225370	COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis].	1.44712e-66
NZ_CP049956.1\|WP_043033923.1\|4828640_4829204_-\|DUF3016-domain-containing-protein	gnl\|CDD\|378666	pfam11454, DUF3016, Protein of unknown function (DUF3016). This is a bacterial family of uncharacterized proteins.	5.21528e-65
NZ_CP049956.1\|WP_049395665.1\|4829448_4831437_+\|PAS-domain-S-box-protein	gnl\|CDD\|236842	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional.	5.94228e-63
NZ_CP049956.1\|WP_165711234.1\|4827390_4828458_+\|alanine-racemase	gnl\|CDD\|143500	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases. This subfamily is composed mainly of proteobacterial alanine racemases (EC 5.1.1.1), fold type III PLP-dependent enzymes that catalyze the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. hese proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.	0
NZ_CP049956.1\|WP_076739390.1\|4840887_4841679_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	2.39269e-16
NZ_CP049956.1\|WP_165711236.1\|4838164_4839076_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293825	cd07739, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	8.4901e-99
NZ_CP049956.1\|WP_165711237.1\|4839214_4839853_-\|NAD(P)H-binding-protein	gnl\|CDD\|225462	COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only].	4.3673e-67
NZ_CP049956.1\|WP_111173623.1\|4836744_4837815_+\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
NZ_CP049956.1\|WP_005407930.1\|4836038_4836554_-\|3-hydroxyacyl-[acyl-carrier-protein]-dehydratase-FabA	gnl\|CDD\|179953	PRK05174, PRK05174, bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase.	3.90362e-120
NZ_CP049956.1\|WP_005407938.1\|4844823_4845402_+\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	8.42842e-35
NZ_CP049956.1\|WP_165711235.1\|4833334_4834036_+\|pseudouridine-synthase	gnl\|CDD\|211327	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like. This group is comprised of eukaryotic and bacterial proteins similar to Escherichia coli RsuA. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E.coli RsuA makes psi516 in 16S RNA. Psi at this position is not generally conserved in other organisms.	3.6274e-75
NZ_CP049956.1\|WP_065184091.1\|4841743_4842400_+\|phosphoglycolate-phosphatase	gnl\|CDD\|237310	PRK13222, PRK13222, N-acetylmuramic acid 6-phosphate phosphatase MupP.	4.38827e-85
NZ_CP049956.1\|WP_043033919.1\|4834032_4834716_+\|HAD-family-phosphatase	gnl\|CDD\|223710	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only].	8.38787e-59
NZ_CP049956.1\|WP_005412127.1\|4826107_4827412_+\|D-amino-acid-dehydrogenase	gnl\|CDD\|234819	PRK00711, PRK00711, D-amino acid dehydrogenase.	0
NZ_CP049956.1\|WP_005407919.1\|4825478_4825958_-\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	2.38136e-70

>NZ_CP049956.1|WP_043033919.1|4834032_4834716_+|HAD-family-phosphatase
MTTIAALPFLPDAVIFDMDGLMIDSERVSLACWSQAADEFGLGLDEAVFLRMVGLGDRDTHALLRAQGIEDSVIEAVAARCHDLYEARTQTGLPLRPGILELLQLLKAHAVPRAVATTTRQPRANRKLAAAGLLPYFDAVITSGDVARPKPAPDIYLLAAQRLGQAPERCLALEDSPAGTRAALAAGMTVIQVPDLVHPDEELRALGHRIVGSLVDAHALLLPLLPR
>NZ_CP049956.1|WP_165711235.1|4833334_4834036_+|pseudouridine-synthase
MKLVKLIANLGYGSRKQVQWMFREGRVTDADGEVLYADDQVPHEAIRVDGEPLDPPVGLSIALHKPAGYTCSTKDTGRLIYDLLPPRFRDRDPMLSTVGRLDRETSGLLLLTDDGGLLHRIISPKSKLPKVYEVELSDDLRGDEVALFASGTLMLESEKTPLLPAELEVLDARRARLVLHEGRYHQVRRMFAATGNHVQALHRSRVGGLDLQGLDEGQWRQLTSTDLDTLFAP
>NZ_CP049956.1|WP_099524721.1|4832273_4833338_+|methyltransferase
MASSDDAPLQTLFLPFSQGALRWPEGPVAFLRARDGWPLREVAGNREVHCEQSFAPFAQPLQQAAGWTVSGQLDDVAGKGRYPLVLVLPPRQREEARALFARALALVADGGRIVACQSNNEGARSGEGDLKQLTGLGGSLTKNHCRVYWTAPMQGQHDADLAKRWSALDAVRPIVGGRFLSRPGVFAWDRIDPASALLAEHLPADLAGRAADLGAGYGYLSRELLERCPKITALDLYEAEQRALALAELNLAPPPRPLPLRFLWQDVTAGIEPAYDVIISNPPFHTPSRADRPDIGQRFIAVAAQALRPGGRLYVVANRHLPYEYTLNESFGAVRVIAERDGFKLVEAVKGKGK
>NZ_CP049956.1|WP_005407925.1|4831853_4832117_-|hypothetical-protein
MRALFVGGVVDNSEMDLEGSHPPVHYPEDTGGGHSRYRLHQVGHGADGSVAYAVYGAPDLADDEVARVAEERAYARRFEATPTLFEH
>NZ_CP049956.1|WP_024957100.1|4831480_4831771_+|DUF3247-family-protein
MSRIAPRIHTDPAQIARLEALLPQLDGETQVELILHDGRRLLGTVAVRPTVQQYRNVAGDEGSNGQLRLDDYDTPVQQHHVWLDEIASIRRLPPRV
>NZ_CP049956.1|WP_049395665.1|4829448_4831437_+|PAS-domain-S-box-protein
MMVPAPEPDLHHGVLERINAGFCVIQVLFEGDRAVDYRFIEVNDAFERHTGLKDARGQRMSALEPNHEEDWFRIYGEVARSGRPAQFEMEARALGRSFAVDAVRVGRPGEDKVGILFFDITARKQMEVELGESEARFSALADGLPMPVWVLDERGHARFVNSAFSEFFGGDETRVPEDVWRGLVHPDDASVFEYELQEALKAQRSMHALVRARRADGQWRWLEMNARPRFSRMGRFIGLAGSSPDVTERREIELAREELLQSERAARSAAENMARLKDEFLATLSHELRTPLTTILGWSELLLQRVDNTSPLYKGLNVIANSAGAQKRLISDMLDLSSMLLGKVQLEVEVLDLRTLLGEAIGAQELVAEGKALDVNLQLPKQPSLVLGDATRLQQVFWNLLSNAIKFTPAEGRIDVQLQADGTHWVITVRDTGDGIAPEFLNHLFSRFRQADGTTTRRHGGLGLGLAIVQQLVELHGGTVAAASEGHGHGATFTVRLPQHLPDAERRPLREVISGPILEPVIVEPYPLRGMHVLAVEDQPEVLEYLRRMLEEQGASVSAASSAGEALALLADTGHLQYHVMLTDIGMPGMDGYGLVRTLREDMGVDAATLPAVAVTALARADDRRRALASGFQEHVAKPYSVAQLVAAVRKVQVPRADSALH
>NZ_CP049956.1|WP_043033923.1|4828640_4829204_-|DUF3016-domain-containing-protein
MKRALVIALLAGALVVSGANAAARNVTGTDAPRALQANGPVSVKWEDPATFTEIRQSTNRFEAERGDWVQQLARYLQTTAAKPLQPGQTLDVTLVDIKRAGDYEPWHGPRARDIRVMRDIYPPRITLQYTLKDADGRIVSEGDARLSDSGYLQGSGLLTNSDPLRYEKRLIDDWVKRQLASQATAAR
>NZ_CP049956.1|WP_165711234.1|4827390_4828458_+|alanine-racemase
MRPARALIDLGALRSNYRLARELGGGKALAIIKADAYGHGAVRCAQALEGEADGFGVATIEEALELRQAGIRAPILLLEGIFEPSDMALVAEHDFWFAVGSPWQLEAVAAFDSPRPLTVWLKLDSGMHRLGLDVDSFRAAHGRLSALPQVERIVLMTHLARADELDSERTHEQAATFARAIDGLHGETSVCNSPALLGWPDVRSDWVRPGLMLYGANPLPDDTTLTERLRPVMTMQSKVIAERWIEAGEPVGYGARFVAKARTRVGVVALGYADGYPQFAPNGTPVLIDGQPGALIGRVSMDMLTVDLTAHPQAAVGSVVELWGSAPTLAELAPRCGVSAYQLPCAVKRVAKVYV
>NZ_CP049956.1|WP_005412127.1|4826107_4827412_+|D-amino-acid-dehydrogenase
MRVLVLGSGVIGTTSAWYLRQAGFEVTVIDRQPGPALETSFANAGQLSFGYTSPWAAPGVPKKAIGWLFEKHAPLAIKPGMDLAQYRWLWQMLRNCTHERYAINKARMVRMSEYSRDCLNELRAQIGIEFEGRDLGTTQLFRTQQQLDASAQDIEILAQYGVPYEVLDRAGIIQAEPALAHVDGLVGALRLPRDQTGDCQLFTRRLAQMCVDAGVEFRFDQDITGLEFDGDRITGVRIDGKLETADRFVVALGSYSPALVAPLGMRLPVYPLKGYSLTLPITDPAMAPTSTILDESYKVAVTRFDDRIRVGGMAEVAGFDLSLSQRRRETLELVVSDLYPKGGDLSRAQFWTGLRPATPDGTPVIGATPFRNLYLNTGHGTLGWTMACGSGRYLADLMSARQPQISTEGLDIFRYGQYGHAPQQENRTCVLPAR
>NZ_CP049956.1|WP_005407919.1|4825478_4825958_-|winged-helix-turn-helix-transcriptional-regulator
MATRTRELDKIDRKILRILQAEGRISFTELGERVGLSTTPCTERVRRLEREGVITGYHAHLDPAAVKASLLVFVEISLAYKSGDIFEEFRRAALKLPNVLECHLVSGDFDYLLKARISEMASYRKLLGSTLLTLPHVRESKSYIVMEEVKETLSLPIPD
>NZ_CP049956.1|WP_012479031.1|4834830_4836039_-|beta-ketoacyl-ACP-synthase-I
MRRVVITGMGITSCLGNDLDTVSAALREGRSGITALADHAEAGLRSQVGGRVDLDLEALIDRKQKRFMSDAAAFAYLAMRDAIADAGLSAEQVSSLRTGLIAGSGGGSSEWQIGAVDLLRERGVRKVGPYMVPRTMCSTVSACLATAYQIKGVSYSLSAACATSAHCIGAAADMIRHGAQDIMFAGGGEDLHWSMSVMFDAMGALSTSFNETPASASRPYDKDRDGFVIAGGGGMLVLEDYDHAVARGAHIHAELIGYGVTSDGADMVAPSGEGAVRCMKMALQGVDRPLDYLNTHGTSTPLGDVTELNAIREVFGDAVPPLSSTKALSGHSLGAASVHEAIYCLLMMRDGFVAGSANIGELDPKVESFPILRESREQKLDTVMSNSFGFGGTNAALVFGRV
>NZ_CP049956.1|WP_005407930.1|4836038_4836554_-|3-hydroxyacyl-[acyl-carrier-protein]-dehydratase-FabA
MTRLHAFNREQLLASARGELFGTAAGRLPNDPMLMFDRITDIREDGGPHGKGMVRAELDIRPDLWFFGCHFIGDPVMPGCLGLDAMWQLTGFFLTWLGAPGKGRALGCGEVKFTGQVLPEAKLVRYEIDISRVINRKLVMAQSDARMYVDDREIYSARDLRVGLFTETGSF
>NZ_CP049956.1|WP_111173623.1|4836744_4837815_+|DNA-polymerase-IV
MTRLRKIIHVDMDAFYASVEQRDDPSLRGKPVVVAWRGARSVVCAASYEARVFGVRSAMPAVRAERLCPDAIFVPPDFARYKAVSQQVRAIFLRHTDLVEPLSLDEAYLDVTEPKSGIELATDIARTIRAQIREETNLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVDAFLAPLPVNRVPGVGKVMEGKLAARGIVTCGDLRQWALIDLEEAFGSFGRSLYNRARGIDERPVEPDQQVQSISSEDTFAEDLLLEDLTEAIVQLAGKTWNATRKTERIGHTVVLKLKTAQFRILTRSFTPERPPESMEELRDIALALRARVDLPAETRYRLVGVGLGGFREKEPVVQGELFEH
>NZ_CP049956.1|WP_165711236.1|4838164_4839076_-|MBL-fold-metallo-hydrolase
MRTAALLLPLALAAAFASAPLMAASATPTPATATRSQLHLQTFHPGPQAMFSVSSVLIEGRHDAILVDAQFGASDARKLVELIRASGKQLTTIYISHGDPDYYFGLATLQDAFPQARIVATAQTVAHIQQTQAGKLAYWGPKMGADVPSRIVVPQVLDGDALQLEGQRLPLIGLDGPAPDRTVLWVPSLRAIVGGIPVVAGEHVWMADTQTPKSHADWLQTLQRLQALKPKVVVPGHYAPGAALDASALVFTADYIRAFDAETAKAKDSAALVKAMQARYPKLDGVASLELSAKVAKGEMQWP
>NZ_CP049956.1|WP_165711237.1|4839214_4839853_-|NAD(P)H-binding-protein
MKIALVGSTGNIGRQIARHALANGHELTVIVRSAQDLPAELAGAHPVIASLDDQDALVAAIAGHDVLASAYGPRPGDDIGRVGEVAAQLAAAARKAGVPRLVVVGGAGSLEVAPGVQLVDTPNFPEAYKPYALAHREAFNRLQALDDLDWTFFSPAAEIGPGEERGQYRVQPKAFLADASGHSRISYADYGAAFVAELEAHQYPKQIITAAY
>NZ_CP049956.1|WP_005407934.1|4839961_4840891_+|LysR-family-transcriptional-regulator
MDRLTAMTVFVEVAERGSLTAAAEVLDMSRAMVSRYLAEVEAWLGARLLHRTTRRVSLTGPGEAALARFRQMLAIGEELQGELASDDPEPHGTLRVTASVSFGQSHLARAVAGFVARHPAARIELLLVDRMVNLVEERVDLAVRIARQIDPSLIARRLATCRSVLCATPSYLQARGTPTAPEHLAGHNCLTHHYVGKSLWQLHRDGRSLSVAVGGNISANEASLLLEAVRAGAGIAMLPTYQVAPLLRSGELIELLPEFSLDELGIHAVYASRRQQPAIMRRFLDFLAECFASPAFQDLDWRPPGKENT
>NZ_CP049956.1|WP_076739390.1|4840887_4841679_+|class-I-SAM-dependent-methyltransferase
MNHGQALIDHNRAAWDRQASEVREWSRPVESSTIAAARDGRWQVHLTPRALPLDWLGDVRGRRILCLASGGGQQAPVLAAAGAEVTVFDLSDGQLEQDRSVAARDGLRLRTVQGDMRDLHVFANDSFDVVFHPISNLYVPDVRPVWTECRRVLARDGMLMASFYNPVLFVGARDPQLDAQGLIRPQYAIPYSDLEDLPPAEREAKLARGDALTFGHSLTELIGGQLDAGFVIDRFMEDWQPQPRFLIDRYLPTFLATRARRIG
>NZ_CP049956.1|WP_065184091.1|4841743_4842400_+|phosphoglycolate-phosphatase
MPYPYPLVVFDLDGTLVDSAADIAEALNRTLEDIGVARVPEATVLGWIGDGVRRLVEQAVQAAGREVDLAEVMPVFMVHYRECLLRSPRLFDGVGEALAQLRARNVPLAICTNKPEALVPPLLQHLGIGDAFALVLGGDSLPQRKPSGEPLRHIAAHFGLPVESCLMVGDSLTDYRAAEEAGMPIALVRYGYPRGLDLATAHAVAVIDDLRELPGLRG
>NZ_CP049956.1|WP_165711238.1|4842500_4844342_-|TonB-dependent-vitamin-B12-receptor
MKLQSRMLSLAVLAALPALAQAANDTTALDQILVTATRTPIALQDSIAPAQVIDRAQIESSQATSLQELLRGRAGINLANAGGLGKQSSLFLRGTNSGHTVVLVDGVRINSADLGLAMYQDLPLAQIERVEIVRGPQSSLYGADAIGGVIQIFTRRNQGDFAPHFQLGGGSNGLREASGGIGGGTERGWFGADIAYQHSDGIDACRGSATLFTGCFADEPDRDGYRNLSKSLRGGYIFNDQWNVEGSALRADGKNHYDGYYNYSETRQQVLAGKVRYTPSERLAFTANVGRSDNESDNFGDFGARGSAQTHRDSASLQGDFGVAEGQLLSAGVDWSEDNLDGSSAGYLVDSRRNTGVFVQYQGRFGRHQLQASARNDDNQQFGNHATGSVGWAMELGHGLRLNASYGTAFKAPTFSDLYDPWSGVPTLNPEKSKSANLGVSQQGQGWHWGLDVYETRIDDLITYDAATFKMQQVEKARIRGAELTGGVLLAGFDINAQLSYTDPRNRTGGSTQFDNWLPRRAQQTARLDIDRRFGDFRAGLTVQGAGKRYDDAANTVKVGGYGTLDLRAEYALTPSWSLLARAANVFDRRYETVAWFNQPGREYQLSVRFQPK
>NZ_CP049956.1|WP_005407938.1|4844823_4845402_+|histidine-phosphatase-family-protein
MILDLVRHAGNGRDEFLDGRSDPPQLAGLPQELVEAYAGQRWERVISSPRLRALHTAMALATPRGLDVEADEEWEELDFGDWDGRSLFDLPEDALAAFHADPHAFPPPNGESWGHFERRIARALDRLLDDDDPVPTLVVSHGGPLRMVLSQVCGLPMSLCWALRIDHGTRLRVWLERGEIGLVGELLELQQP

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP049956_7	7.2\|3523098\|28\|NZ_CP049956\|CRISPRCasFinder	3523098-3523125	28	NZ_CP024936	Paraburkholderia graminis strain PHS1 plasmid pPHS1_P, complete sequence	323704-323731	6	0.786
NZ_CP049956_6	6.1\|3332769\|31\|NZ_CP049956\|CRISPRCasFinder	3332769-3332799	31	NC_010879	Burkholderia glumae strain BGR1 plasmid pBGF2, complete sequence	12346-12376	8	0.742

1. spacer 7.2|3523098|28|NZ_CP049956|CRISPRCasFinder matches to NZ_CP024936 (Paraburkholderia graminis strain PHS1 plasmid pPHS1_P, complete sequence) position: , mismatch: 6, identity: 0.786

aggatcatggcgtcgattggccctgtgt	CRISPR spacer
gcgatcatggcgtcgatcggcccggcgc	Protospacer
. ***************.***** *.*.

2. spacer 6.1|3332769|31|NZ_CP049956|CRISPRCasFinder matches to NC_010879 (Burkholderia glumae strain BGR1 plasmid pBGF2, complete sequence) position: , mismatch: 8, identity: 0.742

cggtagatccgcgccatgcgtggatgggaaa	CRISPR spacer
cgtcagatccgcgccatccgcggatggctcg	Protospacer
** .************* **.******   .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

367333 : 387200

Rhizobium_phage(28.57%)

tail,head

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_049434066.1\|367333_369466_-	hypothetical protein	A0A076YL68	Mesorhizobium_phage	1.1e-59	29.9
WP_005412402.1\|369465_370056_-	hypothetical protein	A0A2R2ZGD2	Ralstonia_phage	1.7e-26	41.9
WP_049434069.1\|370155_371109_-	hypothetical protein	L7TJ83	Rhizobium_phage	4.1e-62	42.4
WP_049434070.1\|371135_371921_-	hypothetical protein	A0A1B1IVZ8	uncultured_Mediterranean_phage	1.1e-20	31.1
WP_004154577.1\|371920_372064_-	hypothetical protein	NA	NA	NA	NA
WP_005412405.1\|372081_373638_-\|head,tail	phage collar / T7-like phage head-to-tail joining protein	L7TJ79	Rhizobium_phage	1.1e-85	37.6
WP_005412406.1\|373630_373783_-	hypothetical protein	NA	NA	NA	NA
WP_049434071.1\|373803_373983_-	hypothetical protein	NA	NA	NA	NA
WP_049434072.1\|374047_374584_-	adenylate kinase	A0A2H4J8A1	uncultured_Caudovirales_phage	8.1e-31	46.7
WP_165710222.1\|374679_374997_+	hypothetical protein	NA	NA	NA	NA
WP_049397854.1\|375000_375207_-	hypothetical protein	NA	NA	NA	NA
WP_004154583.1\|375194_376028_-	hypothetical protein	M1HMA9	Pelagibacter_phage	2.0e-36	36.0
WP_160314061.1\|376024_376174_-	hypothetical protein	NA	NA	NA	NA
WP_049434075.1\|376170_376461_-	hypothetical protein	NA	NA	NA	NA
WP_004154585.1\|376457_376706_-	hypothetical protein	NA	NA	NA	NA
WP_005412414.1\|376856_377222_-	hypothetical protein	NA	NA	NA	NA
WP_050483582.1\|377218_377557_-	hypothetical protein	A0A2H4P845	Pseudomonas_phage	9.6e-22	53.2
WP_065428010.1\|377538_379413_-	DNA polymerase	A0A076YNV1	Mesorhizobium_phage	8.5e-160	48.2
WP_049434078.1\|379425_380076_-	hypothetical protein	NA	NA	NA	NA
WP_005412417.1\|380086_380335_-	hypothetical protein	NA	NA	NA	NA
WP_004154589.1\|380500_382132_-	toprim domain-containing protein	L7TLT7	Rhizobium_phage	3.7e-151	56.6
WP_049434079.1\|382118_382298_-	hypothetical protein	NA	NA	NA	NA
WP_004154592.1\|382294_382681_-	hypothetical protein	NA	NA	NA	NA
WP_004154593.1\|382692_383055_-	putative N-acetylmuramoyl-L-alanine amidase	I6Q9Z5	Yersinia_phage	2.5e-15	40.6
WP_160314062.1\|383055_383493_-	RusA family crossover junction endodeoxyribonuclease	A0A2I7QZP6	Vibrio_phage	1.2e-05	31.1
WP_004154595.1\|383476_384142_-	hypothetical protein	A0A076YJ33	Mesorhizobium_phage	1.5e-26	40.9
WP_154267700.1\|384141_384300_-	hypothetical protein	NA	NA	NA	NA
WP_049397849.1\|384299_384584_-	hypothetical protein	NA	NA	NA	NA
WP_005412422.1\|384576_384720_-	hypothetical protein	NA	NA	NA	NA
WP_005412423.1\|384764_387200_-	DNA-directed RNA polymerase	L7TQW5	Rhizobium_phage	1.5e-164	40.7

DBSCAN-SWA_2

391118 : 468759

Escherichia_phage(19.23%)

tail,protease,plate,integrase

attL 443915:443932|attR 475311:475328

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004154600.1\|391118_392408_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	2.9e-135	58.0
WP_049449901.1\|392551_394999_+	endopeptidase La	A0A0R6PGP8	Moraxella_phage	1.9e-220	51.9
WP_005408270.1\|395216_395489_+	HU family DNA-binding protein	A7KV42	Bacillus_phage	4.5e-22	62.9
WP_165710223.1\|396330_398286_+	peptidylprolyl isomerase	NA	NA	NA	NA
WP_044569572.1\|398500_399700_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA
WP_005412427.1\|399696_400461_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
WP_005408274.1\|400472_401123_+	hypothetical protein	NA	NA	NA	NA
WP_005408275.1\|401136_401589_+	ribonuclease HI	J9Q745	Salmonella_phage	1.0e-42	53.4
WP_165710224.1\|401593_402325_+	DNA polymerase III subunit epsilon	A0A1B2LRV5	Wolbachia_phage	3.8e-07	42.4
WP_005408277.1\|402436_403141_-	serine/threonine-protein phosphatase	NA	NA	NA	NA
WP_165710225.1\|403804_406819_-	autotransporter domain-containing protein	NA	NA	NA	NA
WP_005408281.1\|407109_407514_+	hypothetical protein	A0A1C9C5K8	Heterosigma_akashiwo_virus	1.3e-17	35.3
WP_012479274.1\|407592_408639_-	glycosyltransferase family 9 protein	NA	NA	NA	NA
WP_012479275.1\|408659_409409_+	3-deoxy-D-manno-octulosonic acid kinase	NA	NA	NA	NA
WP_005408284.1\|409408_410176_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_012479276.1\|410172_410562_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_005408286.1\|411037_411355_+	quaternary ammonium compound efflux SMR transporter SugE	NA	NA	NA	NA
WP_165710226.1\|411714_422619_+	transporter	NA	NA	NA	NA
WP_033835198.1\|422675_423119_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_049442234.1\|423878_425009_-	hypothetical protein	NA	NA	NA	NA
WP_012479281.1\|425086_426226_-	restriction-modification system methyltransferase	NA	NA	NA	NA
WP_049397088.1\|426793_428845_+	DNA polymerase III subunit gamma/tau	A0A1U9WR94	Streptococcus_virus	2.1e-47	41.4
WP_005408298.1\|428851_429172_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA
WP_005408299.1\|429283_429883_+	recombination protein RecR	NA	NA	NA	NA
WP_005408300.1\|429950_430310_+	histidine triad nucleotide-binding protein	NA	NA	NA	NA
WP_005408301.1\|430387_430915_-	membrane protein	NA	NA	NA	NA
WP_164172621.1\|430911_432861_-	DUF3488 domain-containing protein	NA	NA	NA	NA
WP_111686939.1\|432853_433798_-	DUF58 domain-containing protein	NA	NA	NA	NA
WP_005408304.1\|433800_434754_-	AAA family ATPase	NA	NA	NA	NA
WP_165710227.1\|434796_436638_+	glycosyltransferase family 39 protein	NA	NA	NA	NA
WP_012479286.1\|436867_437437_-	septum formation inhibitor Maf	NA	NA	NA	NA
WP_049397145.1\|437550_438060_+	characterized ACR protein	NA	NA	NA	NA
WP_005408308.1\|438167_438362_+	50S ribosomal protein L32	NA	NA	NA	NA
WP_005408309.1\|438453_439431_+	ketoacyl-ACP synthase III	NA	NA	NA	NA
WP_005408310.1\|439509_440292_+	hypothetical protein	NA	NA	NA	NA
WP_059033318.1\|440548_441493_+	ACP S-malonyltransferase	NA	NA	NA	NA
WP_005408312.1\|441575_442319_+	3-oxoacyl-ACP reductase FabG	Q06VL0	Trichoplusia_ni_ascovirus	4.7e-13	32.3
WP_005408313.1\|442471_442711_+	acyl carrier protein	B2ZXV3	Ralstonia_phage	4.6e-10	44.6
WP_012479290.1\|442854_444117_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
443915:443932	attL	NA	NA	NA	NA
WP_165710228.1\|444307_445672_+	aminodeoxychorismate synthase component I	NA	NA	NA	NA
WP_024956117.1\|445870_446932_+	endolytic transglycosylase MltG	NA	NA	NA	NA
WP_005412450.1\|446928_447594_+	dTMP kinase	W8D0J5	Erwinia_phage	5.5e-21	34.9
WP_012479293.1\|447590_448547_+	DNA polymerase III subunit delta'	NA	NA	NA	NA
WP_005412452.1\|448543_448897_+	type IV pilus biogenesis protein PilZ	NA	NA	NA	NA
WP_005408320.1\|449316_449697_+	tautomerase family protein	NA	NA	NA	NA
WP_109337334.1\|449727_450801_-	phage late control D family protein	D5LGY1	Escherichia_phage	2.9e-96	52.5
WP_005408322.1\|450791_451007_-\|tail	phage tail protein	A0A193GYC8	Enterobacter_phage	1.6e-14	54.3
WP_005408323.1\|450990_451458_-\|tail	phage tail protein	A0A218M4I2	Erwinia_phage	1.1e-15	35.2
WP_165710229.1\|451460_453908_-\|tail	phage tail tape measure protein	A0A1W6JT50	Escherichia_phage	7.2e-26	22.1
WP_005412456.1\|454028_454319_-\|tail	phage tail assembly protein	A0A193GYZ8	Enterobacter_phage	1.5e-18	58.5
WP_005412457.1\|454399_454903_-\|tail	phage major tail tube protein	A0A193GYM4	Enterobacter_phage	1.4e-40	51.2
WP_165710230.1\|454905_456108_-\|tail	phage tail protein	A0A088FVH5	Escherichia_phage	1.0e-126	54.0
WP_165710231.1\|456214_456874_-	hypothetical protein	V9IQM3	Stenotrophomonas_phage	8.7e-19	33.2
WP_111686946.1\|456875_459077_-\|tail	tail fiber domain-containing protein	V9IQX0	Stenotrophomonas_phage	1.5e-115	40.2
WP_049397154.1\|459084_459864_-\|tail	phage tail protein I	V9IQK7	Stenotrophomonas_phage	7.1e-44	51.1
WP_111197492.1\|459856_460753_-\|plate	baseplate assembly protein	V5YTH6	Pseudomonas_phage	3.2e-80	56.1
WP_165710232.1\|460755_461094_-\|plate	phage baseplate protein	A0A193GYY8	Enterobacter_phage	7.8e-32	62.2
WP_165710233.1\|461146_461737_-\|plate	phage baseplate assembly protein V	A0A193GYL5	Enterobacter_phage	7.3e-25	37.7
WP_165710234.1\|461733_462288_-	hypothetical protein	NA	NA	NA	NA
WP_059033345.1\|462641_463019_-	hypothetical protein	NA	NA	NA	NA
WP_049459412.1\|463015_463501_-	glycoside hydrolase family 104 protein	D5LH07	Escherichia_phage	5.4e-42	55.6
WP_043033662.1\|463497_463848_-	hypothetical protein	NA	NA	NA	NA
WP_005408338.1\|463844_464294_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_033835195.1\|464628_465012_-	hypothetical protein	NA	NA	NA	NA
WP_062606600.1\|465164_465803_-	hypothetical protein	A0A2H4J8A1	uncultured_Caudovirales_phage	2.2e-19	37.6
WP_005408341.1\|465844_466072_-	hypothetical protein	NA	NA	NA	NA
WP_062606602.1\|466146_466422_-	hypothetical protein	NA	NA	NA	NA
WP_165710235.1\|466422_468759_-\|integrase	integrase	D5LH15	Escherichia_phage	2.8e-136	43.3
475311:475328	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1864639 : 1875532

Stenotrophomonas_phage(81.82%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_165710450.1\|1864639_1865050_-	hypothetical protein	S0F2J2	Stenotrophomonas_phage	1.9e-48	78.7
WP_099562511.1\|1865181_1865409_+	hypothetical protein	S0F3S0	Stenotrophomonas_phage	2.1e-09	66.1
WP_158234023.1\|1865405_1865582_+	hypothetical protein	NA	NA	NA	NA
WP_016044712.1\|1865571_1866678_+	phage replication protein	S0F3I3	Stenotrophomonas_phage	6.2e-211	96.5
WP_016044713.1\|1866684_1866987_+	single-stranded DNA-binding protein	B1NI78	Stenotrophomonas_phage	5.0e-46	94.8
WP_016044714.1\|1866990_1867182_+	hypothetical protein	NA	NA	NA	NA
WP_165710451.1\|1867198_1867336_+	hypothetical protein	NA	NA	NA	NA
WP_165710190.1\|1867455_1868442_+	hypothetical protein	Q4LAU2	Stenotrophomonas_phage	7.7e-19	40.6
WP_016044717.1\|1868441_1868726_+	DUF2523 domain-containing protein	NA	NA	NA	NA
WP_099562428.1\|1868722_1869937_+	hypothetical protein	A0A077JGB2	Xanthomonas_phage	1.8e-41	33.3
WP_099562427.1\|1870060_1870435_-	hypothetical protein	NA	NA	NA	NA
WP_099562426.1\|1870502_1870853_-	hypothetical protein	S0F2N2	Stenotrophomonas_phage	3.1e-39	71.8
WP_021201811.1\|1871058_1871412_+	hypothetical protein	B1NI82	Stenotrophomonas_phage	1.5e-38	62.7
WP_021201812.1\|1871974_1872661_-	conjugal transfer protein TrbP	A0A1W6DY89	Xanthomonas_phage	2.7e-55	54.2
WP_021201813.1\|1872657_1873842_-	hypothetical protein	B1NI81	Stenotrophomonas_phage	7.2e-56	36.5
WP_165710452.1\|1873838_1874150_-	DUF2523 domain-containing protein	NA	NA	NA	NA
WP_165710453.1\|1874158_1875532_-	hypothetical protein	S0F309	Stenotrophomonas_phage	8.1e-59	40.6

DBSCAN-SWA_4

2360139 : 2417021

Siphoviridae_environmental_samples(16.67%)

protease,head,holin,capsid,terminase,tail,integrase,portal

attL 2359351:2359369|attR 2401193:2401211

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2359351:2359369	attL	NA	NA	NA	NA
WP_165710552.1\|2360139_2361054_+	hypothetical protein	A0A1R3Y6Z6	Salmonella_virus	8.2e-84	48.3
WP_165710553.1\|2361230_2361896_+	SOS response-associated peptidase	B7SYF4	Stenotrophomonas_phage	3.8e-123	97.2
WP_165710554.1\|2361999_2362767_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_165710555.1\|2362890_2363634_-	hypothetical protein	NA	NA	NA	NA
WP_099562185.1\|2363633_2364023_-	hypothetical protein	NA	NA	NA	NA
WP_165711282.1\|2364022_2367412_-	host specificity protein J	A0A2R3UA88	Siphoviridae_environmental_samples	0.0e+00	66.1
WP_165710556.1\|2367522_2368107_-\|tail	tail assembly protein	Q3HQU4	Burkholderia_phage	1.4e-44	52.3
WP_165710557.1\|2368099_2368840_-	peptidase P60	A0A2R3UAR4	Siphoviridae_environmental_samples	3.9e-84	59.9
WP_165710558.1\|2368915_2369137_+	hypothetical protein	NA	NA	NA	NA
WP_165710559.1\|2369133_2369829_-\|tail	phage minor tail protein L	A0A2R3UA90	Siphoviridae_environmental_samples	3.8e-97	69.3
WP_165710560.1\|2369825_2370296_-	hypothetical protein	NA	NA	NA	NA
WP_165710561.1\|2370297_2371122_-	hypothetical protein	NA	NA	NA	NA
WP_165710562.1\|2371131_2371467_-\|tail	phage tail protein	A0A2R3UA73	Siphoviridae_environmental_samples	1.1e-17	37.8
WP_165710563.1\|2371459_2373613_-	hypothetical protein	A0A2H4PI09	Pseudomonas_phage	1.5e-46	31.0
WP_043034803.1\|2373630_2373837_-	hypothetical protein	NA	NA	NA	NA
WP_165710564.1\|2373869_2374259_-	hypothetical protein	NA	NA	NA	NA
WP_165710565.1\|2374321_2374819_-\|tail	phage tail protein	NA	NA	NA	NA
WP_165710566.1\|2374871_2375225_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_165710567.1\|2375224_2375716_-	hypothetical protein	NA	NA	NA	NA
WP_165710568.1\|2375721_2376060_-\|head	phage head closure protein	A0A1J0GUY4	Halomonas_phage	5.3e-28	60.2
WP_165710569.1\|2376061_2376406_-\|head,tail	phage gp6-like head-tail connector protein	Q6JIM5	Burkholderia_virus	1.7e-21	48.2
WP_165710570.1\|2376408_2376738_-	hypothetical protein	NA	NA	NA	NA
WP_165710571.1\|2376795_2378199_-\|capsid	phage major capsid protein	I7HDH9	Xanthomonas_virus	1.7e-141	66.1
WP_053092058.1\|2378210_2379074_-\|protease	Clp protease ClpP	K7PH05	Enterobacteria_phage	1.2e-76	60.7
WP_165710572.1\|2379078_2380362_-\|portal	phage portal protein	G0ZT36	Aeromonas_phage	8.3e-191	76.1
WP_165710573.1\|2380358_2382116_-\|terminase	terminase large subunit	A0A0U4B0M7	Pseudomonas_phage	6.4e-226	68.2
WP_165710574.1\|2382048_2382474_-\|terminase	P27 family phage terminase small subunit	NA	NA	NA	NA
WP_165710575.1\|2382602_2382944_-	HNH endonuclease	D4FUN2	Pseudomonas_phage	7.9e-16	46.5
WP_165710576.1\|2382943_2383243_-	hypothetical protein	NA	NA	NA	NA
WP_165710577.1\|2383239_2383542_-	hypothetical protein	NA	NA	NA	NA
WP_165710578.1\|2383517_2383952_-	hypothetical protein	NA	NA	NA	NA
WP_065177529.1\|2383945_2384161_-	hypothetical protein	NA	NA	NA	NA
WP_065724374.1\|2384157_2384475_-	hypothetical protein	NA	NA	NA	NA
WP_165710579.1\|2384471_2385137_-	glycoside hydrolase family 19 protein	A0A1B0Z086	Pseudomonas_phage	1.3e-43	49.8
WP_165710580.1\|2385758_2386460_-	hypothetical protein	C8CLH7	Xylella_phage	2.8e-68	59.5
WP_165710581.1\|2386456_2386870_-	hypothetical protein	NA	NA	NA	NA
WP_165710582.1\|2386859_2387093_-	hypothetical protein	NA	NA	NA	NA
WP_165710583.1\|2387089_2387662_-	hypothetical protein	A0A067ZG68	Vibrio_phage	7.5e-27	45.0
WP_165710584.1\|2387661_2387949_-	hypothetical protein	NA	NA	NA	NA
WP_165710585.1\|2387948_2388164_-	hypothetical protein	NA	NA	NA	NA
WP_165710586.1\|2388160_2388664_-	hypothetical protein	NA	NA	NA	NA
WP_165710587.1\|2388656_2389031_-	hypothetical protein	NA	NA	NA	NA
WP_149902069.1\|2389030_2389321_-	hypothetical protein	NA	NA	NA	NA
WP_165710588.1\|2389320_2389539_-	hypothetical protein	NA	NA	NA	NA
WP_165710589.1\|2389728_2390499_-	hypothetical protein	NA	NA	NA	NA
WP_050584629.1\|2391251_2391563_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_043034773.1\|2391568_2392012_-	hypothetical protein	Q3HQZ3	Burkholderia_phage	9.0e-20	44.5
WP_165710590.1\|2392154_2392349_+	hypothetical protein	NA	NA	NA	NA
WP_165710591.1\|2392335_2392500_-	hypothetical protein	NA	NA	NA	NA
WP_165710592.1\|2393061_2393745_+	helix-turn-helix transcriptional regulator	A0A0P0ZE37	Stx2-converting_phage	5.7e-05	24.4
WP_165711283.1\|2393760_2394174_-	hypothetical protein	NA	NA	NA	NA
WP_165710593.1\|2394468_2394705_+	hypothetical protein	NA	NA	NA	NA
WP_165710594.1\|2394701_2394941_+	hypothetical protein	NA	NA	NA	NA
WP_043034767.1\|2394937_2395162_+	hypothetical protein	NA	NA	NA	NA
WP_165710595.1\|2395158_2395410_+	hypothetical protein	NA	NA	NA	NA
WP_165710596.1\|2395406_2395841_+	hypothetical protein	NA	NA	NA	NA
WP_165710597.1\|2396005_2396389_+	hypothetical protein	NA	NA	NA	NA
WP_165710598.1\|2396388_2396631_+	hypothetical protein	NA	NA	NA	NA
WP_165710599.1\|2396718_2396928_+	hypothetical protein	NA	NA	NA	NA
WP_165711284.1\|2396972_2397305_+	hypothetical protein	NA	NA	NA	NA
WP_165710600.1\|2398226_2398667_+	hypothetical protein	W0LI41	Edwardsiella_phage	1.5e-14	38.8
WP_165710601.1\|2398659_2398989_+	hypothetical protein	NA	NA	NA	NA
WP_165710602.1\|2398985_2399570_+	hypothetical protein	NA	NA	NA	NA
WP_165710603.1\|2399566_2399875_+	hypothetical protein	NA	NA	NA	NA
WP_165710604.1\|2400070_2401033_-\|integrase	site-specific integrase	A0A1B1P9F9	Acinetobacter_phage	9.3e-70	44.0
WP_165710605.1\|2402837_2404664_-	PAS domain S-box protein	A0A2H4J162	uncultured_Caudovirales_phage	1.7e-11	30.4
2401193:2401211	attR	NA	NA	NA	NA
WP_005410080.1\|2405452_2406541_+	hypothetical protein	NA	NA	NA	NA
WP_049397486.1\|2406602_2406893_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_005410083.1\|2407199_2409389_-	PAS domain S-box protein	A0A127AWB9	Bacillus_phage	2.6e-19	32.5
WP_165710606.1\|2409597_2411985_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA
WP_165710607.1\|2412192_2412408_-	hypothetical protein	NA	NA	NA	NA
WP_043034666.1\|2413138_2413591_-	hypothetical protein	NA	NA	NA	NA
WP_005410087.1\|2413587_2413791_-	PspC domain-containing protein	NA	NA	NA	NA
WP_005413813.1\|2413855_2414224_-	YfeK family protein	NA	NA	NA	NA
WP_033833144.1\|2414255_2415323_-	class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC	NA	NA	NA	NA
WP_043034665.1\|2415319_2416384_-	class III poly(R)-hydroxyalkanoic acid synthase subunit PhaE	NA	NA	NA	NA
WP_005410091.1\|2416406_2417021_-\|holin	phosphatidylcholine/phosphatidylserine synthase	NA	NA	NA	NA

DBSCAN-SWA_5

3120926 : 3162361

uncultured_Caudovirales_phage(37.5%)

terminase,integrase,tail

attL 3120309:3120357|attR 3159520:3159568

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3120309:3120357	attL	NA	NA	NA	NA
WP_165710823.1\|3120926_3121499_-	hypothetical protein	K7ZJS7	Xanthomonas_citri_phage	3.6e-53	54.1
WP_165710825.1\|3121495_3122452_-	hypothetical protein	K7ZMK0	Xanthomonas_citri_phage	5.8e-56	46.5
WP_165710827.1\|3122448_3123636_-	hypothetical protein	A0A2P1JUX7	Xanthomonas_phage	8.5e-57	42.9
WP_165710829.1\|3123637_3125269_-	hypothetical protein	A0A2P1JUZ3	Xanthomonas_phage	4.6e-69	45.4
WP_165710831.1\|3125350_3125734_-	hypothetical protein	NA	NA	NA	NA
WP_165710833.1\|3125733_3126276_-	lysozyme	A0A1X7QGP1	Escherichia_phage	7.2e-19	33.5
WP_165710835.1\|3126268_3126517_-	hypothetical protein	NA	NA	NA	NA
WP_165710837.1\|3126540_3128184_-\|terminase	phage terminase large subunit	A0A2H4JCA3	uncultured_Caudovirales_phage	1.4e-145	50.6
WP_165710839.1\|3128170_3128566_-	hypothetical protein	A0A2H4J7H0	uncultured_Caudovirales_phage	9.8e-18	44.8
WP_165710841.1\|3128567_3131015_-	hypothetical protein	A0A2H4J9B2	uncultured_Caudovirales_phage	4.0e-186	42.7
WP_165710843.1\|3131014_3133621_-	hypothetical protein	Q858F9	Salmonella_phage	1.5e-08	31.4
WP_165710845.1\|3133617_3135696_-	hypothetical protein	A0A2H4JE92	uncultured_Caudovirales_phage	4.8e-71	30.1
WP_100450524.1\|3135697_3136174_-	hypothetical protein	NA	NA	NA	NA
WP_165710847.1\|3136183_3136630_-	GNAT family N-acetyltransferase	A0A2H4J9Z5	uncultured_Caudovirales_phage	1.2e-19	38.4
WP_165710848.1\|3136626_3138834_-	hypothetical protein	A0A2H4J6H2	uncultured_Caudovirales_phage	4.6e-189	47.1
WP_032957636.1\|3138836_3139427_-	hypothetical protein	A0A2H4JID6	uncultured_Caudovirales_phage	9.5e-41	44.7
WP_165710850.1\|3139507_3140026_-	hypothetical protein	A0A2H4J6M8	uncultured_Caudovirales_phage	1.6e-31	48.9
WP_165710852.1\|3140090_3140954_-	hypothetical protein	A0A2H4JC66	uncultured_Caudovirales_phage	7.0e-109	70.0
WP_165710854.1\|3141174_3142053_-	hypothetical protein	A0A2H4JEQ5	uncultured_Caudovirales_phage	6.6e-38	38.9
WP_165710856.1\|3142036_3142279_-	hypothetical protein	NA	NA	NA	NA
WP_165710858.1\|3142275_3143874_-\|tail	phage tail protein	A0A2H4J3N6	uncultured_Caudovirales_phage	2.0e-173	61.7
WP_165710860.1\|3143873_3144104_-	hypothetical protein	NA	NA	NA	NA
WP_032962289.1\|3144108_3144423_-	hypothetical protein	NA	NA	NA	NA
WP_032962291.1\|3144426_3144936_-	bZIP transcription factor	NA	NA	NA	NA
WP_050483592.1\|3145008_3145245_-	hypothetical protein	A0A2H4JEE3	uncultured_Caudovirales_phage	1.5e-13	50.7
WP_100450386.1\|3145247_3145814_-	crossover junction endodeoxyribonuclease	NA	NA	NA	NA
WP_165710862.1\|3145816_3146107_-	hypothetical protein	NA	NA	NA	NA
WP_165710864.1\|3146103_3146568_-	hypothetical protein	E5AGF7	Erwinia_phage	1.2e-11	33.1
WP_165710866.1\|3146570_3148016_-	replicative DNA helicase	O80281	Escherichia_phage	7.9e-89	43.3
WP_165710868.1\|3148012_3148882_-	hypothetical protein	NA	NA	NA	NA
WP_032962298.1\|3149060_3149423_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_165710870.1\|3149686_3149887_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_165710872.1\|3149979_3150651_+	helix-turn-helix transcriptional regulator	A7Y8H7	Pseudomonas_virus	2.1e-12	29.5
WP_165710874.1\|3150655_3151231_+	hypothetical protein	NA	NA	NA	NA
WP_165710877.1\|3151368_3151833_+	hypothetical protein	NA	NA	NA	NA
WP_165710879.1\|3151942_3152239_+	hypothetical protein	NA	NA	NA	NA
WP_165710881.1\|3152228_3152621_+	hypothetical protein	NA	NA	NA	NA
WP_165710883.1\|3152769_3153297_+	hypothetical protein	NA	NA	NA	NA
WP_165710885.1\|3153371_3154121_+	ERF family protein	A0A1B0VMB2	Pseudomonas_phage	2.0e-35	47.1
WP_165710887.1\|3154124_3154742_+	YqaJ viral recombinase family protein	A0A0K0MD53	Pseudoalteromonas_phage	2.4e-10	30.4
WP_165710889.1\|3154738_3154954_+	hypothetical protein	B7SYG4	Stenotrophomonas_phage	6.1e-06	44.2
WP_100437354.1\|3154950_3155172_+	hypothetical protein	NA	NA	NA	NA
WP_165710891.1\|3155168_3156029_+	hypothetical protein	A0A067XQE4	Caulobacter_phage	1.6e-28	34.8
WP_165710893.1\|3156028_3156319_+	hypothetical protein	NA	NA	NA	NA
WP_165710895.1\|3156315_3156612_+	hypothetical protein	B7SYG3	Stenotrophomonas_phage	1.9e-05	42.9
WP_165710897.1\|3156608_3157322_+	hypothetical protein	B7SYG2	Stenotrophomonas_phage	3.7e-07	30.2
WP_165710899.1\|3157318_3157519_+	hypothetical protein	NA	NA	NA	NA
WP_165710901.1\|3157511_3157664_+	hypothetical protein	NA	NA	NA	NA
WP_165710903.1\|3157656_3158208_+	adenine methyltransferase	A0A166Y0E3	Gordonia_phage	1.2e-48	60.8
WP_087786648.1\|3158219_3158432_+	DUF4224 domain-containing protein	C8CLF5	Xylella_phage	2.5e-12	61.5
WP_165711289.1\|3158431_3159460_+\|integrase	tyrosine-type recombinase/integrase	C8CLF4	Xylella_phage	2.1e-99	56.7
WP_044570756.1\|3159774_3160731_+	hypothetical protein	NA	NA	NA	NA
3159520:3159568	attR	NA	NA	NA	NA
WP_012481067.1\|3160915_3161581_-	7-cyano-7-deazaguanine synthase QueC	A0A2I7S903	Vibrio_phage	4.1e-24	35.9
WP_012481068.1\|3161659_3162361_-	7-carboxy-7-deazaguanine synthase QueE	J9PV61	Bacillus_phage	4.0e-38	41.9

DBSCAN-SWA_6

3697167 : 3716738

Cronobacter_phage(30.0%)

tail,integrase

attL 3690422:3690436|attR 3708555:3708569

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3690422:3690436	attL	NA	NA	NA	NA
WP_165711032.1\|3697167_3698382_-\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	1.8e-102	47.4
WP_165711033.1\|3698836_3700102_+\|integrase	integrase family protein	NA	NA	NA	NA
WP_165711034.1\|3700440_3701457_-	hypothetical protein	NA	NA	NA	NA
WP_164092867.1\|3701741_3702224_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A218MND2	uncultured_virus	6.0e-17	41.8
WP_165711035.1\|3702207_3703458_+	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	4.4e-88	45.4
WP_165711036.1\|3703530_3703962_-	hypothetical protein	NA	NA	NA	NA
WP_165711037.1\|3704501_3705434_-	hypothetical protein	NA	NA	NA	NA
WP_165711038.1\|3705484_3706228_-	hypothetical protein	NA	NA	NA	NA
WP_065183267.1\|3706227_3706575_-	hypothetical protein	NA	NA	NA	NA
WP_165711039.1\|3706613_3710120_-	host specificity protein J	A0A2R3UA88	Siphoviridae_environmental_samples	0.0e+00	60.9
3708555:3708569	attR	NA	NA	NA	NA
WP_165711040.1\|3710116_3710734_-\|tail	tail assembly protein	F1C572	Cronobacter_phage	3.2e-47	50.5
WP_165711041.1\|3710726_3711467_-	peptidase P60	A0A2R3UAR4	Siphoviridae_environmental_samples	1.8e-84	60.7
WP_165711042.1\|3711558_3712251_-\|tail	phage minor tail protein L	A0A2R3UA90	Siphoviridae_environmental_samples	3.1e-83	59.7
WP_165711043.1\|3712247_3712718_-	hypothetical protein	NA	NA	NA	NA
WP_165711044.1\|3712719_3713559_-	hypothetical protein	I7H419	Xanthomonas_virus	9.1e-05	47.3
WP_165711045.1\|3713568_3713916_-\|tail	phage tail protein	I6PBN7	Cronobacter_phage	1.0e-10	37.9
WP_165711046.1\|3713966_3716738_-\|tail	phage tail tape measure protein	A5H1M1	Xanthomonas_virus	4.6e-69	28.6

DBSCAN-SWA_7

3721534 : 3734987

Pseudomonas_phage(20.0%)

terminase,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_165711293.1\|3721534_3722839_-	S49 family peptidase	Q75QM8	Wolbachia_phage	5.2e-39	38.9
WP_165711051.1\|3722885_3724367_-\|portal	phage portal protein	A0A2H4JFL5	uncultured_Caudovirales_phage	3.6e-105	47.8
WP_049461274.1\|3724359_3724575_-	hypothetical protein	NA	NA	NA	NA
WP_165711294.1\|3724576_3726637_-\|terminase	terminase	A5LH27	Enterobacteria_phage	1.7e-145	41.7
WP_008265668.1\|3726638_3727142_-	DUF1441 family protein	A0A219Y9N2	Aeromonas_phage	1.2e-23	38.7
WP_165711052.1\|3727335_3727623_-	hypothetical protein	NA	NA	NA	NA
WP_165711053.1\|3727624_3728107_-	hypothetical protein	NA	NA	NA	NA
WP_031270409.1\|3728103_3728559_-	hypothetical protein	K7ZPX3	Xanthomonas_citri_phage	1.7e-13	38.3
WP_165711054.1\|3728555_3729044_-	glycoside hydrolase family 104 protein	D5LH07	Escherichia_phage	3.6e-70	81.2
WP_165711055.1\|3729559_3730204_+	hypothetical protein	NA	NA	NA	NA
WP_165711056.1\|3730227_3730989_-	hypothetical protein	NA	NA	NA	NA
WP_165711057.1\|3730988_3731141_-	hypothetical protein	NA	NA	NA	NA
WP_165711058.1\|3731137_3732886_-	DEAD/DEAH box helicase	A0A0U1UNQ7	Pseudomonas_phage	8.8e-268	77.6
WP_165711295.1\|3732885_3733260_-	hypothetical protein	A0A0U1UNQ6	Pseudomonas_phage	5.2e-37	62.6
WP_165711059.1\|3733316_3733682_-	hypothetical protein	NA	NA	NA	NA
WP_165711060.1\|3733681_3733906_-	hypothetical protein	NA	NA	NA	NA
WP_165711061.1\|3733902_3734697_-	DNA-binding protein	A0A1W6JP13	Morganella_phage	5.4e-23	48.1
WP_053494466.1\|3734693_3734987_-	hypothetical protein	H2DE79	Erwinia_phage	9.2e-29	61.6

DBSCAN-SWA_8

4907461 : 4918591

Enterobacteria_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012479083.1\|4907461_4908517_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.4e-79	46.2
WP_012479084.1\|4908531_4909419_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	9.7e-98	58.9
WP_012479085.1\|4909415_4909973_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	5.4e-46	51.1
WP_165711254.1\|4909969_4910875_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.1e-27	37.5
WP_143568537.1\|4911067_4912363_+	hypothetical protein	NA	NA	NA	NA
WP_165711255.1\|4912415_4913819_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	1.0e-40	28.1
WP_165711256.1\|4913830_4915177_-	phosphomannomutase	A0A127AWJ1	Bacillus_phage	2.9e-29	26.6
WP_012479090.1\|4915273_4918591_-	DEAD/DEAH box helicase	A0A0P0YNJ0	Yellowstone_lake_phycodnavirus	1.1e-45	34.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP049956

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection