CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_AP022671	Nitrospira sp. KM1	2 crisprs	csa3,csx1,cas3,WYL	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_AP022671_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022671_1

807736-807867

Orphan

Consensus_repeat	Method
CAGCTCCTGCATACGCTGTTTCGCCTCATGAAGCTCTTCGGAGGCGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP022671_1

>merge|NZ_AP022671|1|807736-807867|CRISPRCasFinder
CAGCTCCTGCATACGCTGTTTCGCCTCATGAAGCTCTTCGGAGGCGCGGTTAGCATGAGACGCCTGCTCCTGAGCCGACTCCTCCAGCTCCTGCATACGCTGTTTCGCCTCATGAAGCTCTTCGGAGGCGCG

>NZ_AP022671|1|1|807736-807867|CRISPRCasFinder
CAGCTCCTGCATACGCTGTTTCGCCTCATGAAGCTCTTCGGAGGCGCG	GTTAGCATGAGACGCCTGCTCCTGAGCCGACTCCTC
CAGCTCCTGCATACGCTGTTTCGCCTCATGAAGCTCTTCGGAGGCGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022671.1\|WP_173044933.1\|801427_801736_+\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|223314
NZ_AP022671.1\|WP_173044926.1\|797749_798841_+\|LPS-export-ABC-transporter-permease-LptF	unknown	unknown	gnl\|CDD\|367632
NZ_AP022671.1\|WP_173044956.1\|815904_816642_-\|DUF3365-domain-containing-protein	unknown	unknown	gnl\|CDD\|378734
NZ_AP022671.1\|WP_173044940.1\|805977_806919_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022671.1\|WP_173044938.1\|803733_805878_-\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|225116
NZ_AP022671.1\|WP_173044934.1\|801738_802857_+\|UDP-3-O-(3-hydroxymyristoyl)glucosamine-N-acyltransferase	unknown	unknown	gnl\|CDD\|234858
NZ_AP022671.1\|WP_173044922.1\|796766_797135_+\|PilZ-domain-containing-protein	unknown	unknown	gnl\|CDD\|377796
NZ_AP022671.1\|WP_173044962.1\|818912_819872_-\|cobalamin-biosynthesis-protein-CobD	unknown	unknown	gnl\|CDD\|377002
NZ_AP022671.1\|WP_173044960.1\|817806_818928_-\|pyridoxal-phosphate-dependent-class-II-aminotransferase	unknown	unknown	gnl\|CDD\|273466
NZ_AP022671.1\|WP_173044944.1\|808545_808995_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366716
NZ_AP022671.1\|WP_173044946.1\|809022_809499_-\|chemotaxis-protein-CheW	unknown	unknown	gnl\|CDD\|366716
NZ_AP022671.1\|WP_173044954.1\|815489_815852_-\|response-regulator	unknown	unknown	gnl\|CDD\|381133
NZ_AP022671.1\|WP_173044950.1\|813017_814892_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|223910
NZ_AP022671.1\|WP_173044936.1\|802867_803389_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022671.1\|WP_173044929.1\|798912_800004_+\|LPS-export-ABC-transporter-permease-LptG	unknown	unknown	gnl\|CDD\|275201
NZ_AP022671.1\|WP_173044924.1\|797237_797453_-\|cold-shock-domain-containing-protein	unknown	unknown	gnl\|CDD\|278729
NZ_AP022671.1\|WP_173044931.1\|800161_801418_+\|beta-ketoacyl-ACP-synthase-II	unknown	unknown	gnl\|CDD\|274452
NZ_AP022671.1\|WP_173044952.1\|814948_815485_-\|purine-binding-chemotaxis-protein-CheW	unknown	unknown	gnl\|CDD\|223905
NZ_AP022671.1\|WP_173044958.1\|817052_817814_-\|adenosylcobinamide-amidohydrolase	unknown	unknown	gnl\|CDD\|376682
NZ_AP022671.1\|WP_173044948.1\|809555_812981_-\|Hpt-domain-containing-protein	unknown	unknown	gnl\|CDD\|223716

Protein	Function_ID	Function_description	E-value
NZ_AP022671.1\|WP_173044933.1\|801427_801736_+\|acyl-carrier-protein	gnl\|CDD\|223314	COG0236, AcpP, Acyl carrier protein [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism].	9.70769e-17
NZ_AP022671.1\|WP_173044926.1\|797749_798841_+\|LPS-export-ABC-transporter-permease-LptF	gnl\|CDD\|367632	pfam03739, YjgP_YjgQ, Predicted permease YjgP/YjgQ family. Members of this family are predicted integral membrane proteins of unknown function. They are about 350 amino acids long and contain about 6 transmembrane regions. They are predicted to be permeases although there is no verification of this.	1.514e-69
NZ_AP022671.1\|WP_173044956.1\|815904_816642_-\|DUF3365-domain-containing-protein	gnl\|CDD\|378734	pfam11845, DUF3365, Protein of unknown function (DUF3365). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 198 to 657 amino acids in length.	1.77712e-28
NZ_AP022671.1\|WP_173044938.1\|803733_805878_-\|HD-domain-containing-protein	gnl\|CDD\|225116	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms].	6.35004e-51
NZ_AP022671.1\|WP_173044934.1\|801738_802857_+\|UDP-3-O-(3-hydroxymyristoyl)glucosamine-N-acyltransferase	gnl\|CDD\|234858	PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional.	7.32744e-136
NZ_AP022671.1\|WP_173044922.1\|796766_797135_+\|PilZ-domain-containing-protein	gnl\|CDD\|377796	pfam07238, PilZ, PilZ domain. PilZ is a c-di-GMP binding domain which is found C terminal to pfam07317. Proteins which contain PilZ are known to interact with the flagellar switch-complex proteins FliG and FliM. This interaction results in a reduction of torque generation and induces CCW motor bias. This domain forms a beta barrel structure.	1.19935e-05
NZ_AP022671.1\|WP_173044962.1\|818912_819872_-\|cobalamin-biosynthesis-protein-CobD	gnl\|CDD\|377002	pfam03186, CobD_Cbib, CobD/Cbib protein. This family includes CobD proteins from a number of bacteria, in Salmonella this protein is called Cbib. Salmonella CobD is a different protein. This protein is involved in cobalamin biosynthesis and is probably an enzyme responsible for the conversion of adenosylcobyric acid to adenosylcobinamide or adenosylcobinamide phosphate.	3.66386e-122
NZ_AP022671.1\|WP_173044960.1\|817806_818928_-\|pyridoxal-phosphate-dependent-class-II-aminotransferase	gnl\|CDD\|273466	TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see pfamAM:pfam00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin].	2.56859e-90
NZ_AP022671.1\|WP_173044944.1\|808545_808995_-\|hypothetical-protein	gnl\|CDD\|366716	pfam01584, CheW, CheW-like domain. CheW proteins are part of the chemotaxis signaling mechanism in bacteria. CheW interacts with the methyl accepting chemotaxis proteins (MCPs) and relays signals to CheY, which affects flageller rotation. This family includes CheW and other related proteins that are involved in chemotaxis. The CheW-like regulatory domain in CheA binds to CheW, suggesting that these domains can interact with each other.	0.000989214
NZ_AP022671.1\|WP_173044946.1\|809022_809499_-\|chemotaxis-protein-CheW	gnl\|CDD\|366716	pfam01584, CheW, CheW-like domain. CheW proteins are part of the chemotaxis signaling mechanism in bacteria. CheW interacts with the methyl accepting chemotaxis proteins (MCPs) and relays signals to CheY, which affects flageller rotation. This family includes CheW and other related proteins that are involved in chemotaxis. The CheW-like regulatory domain in CheA binds to CheW, suggesting that these domains can interact with each other.	4.50013e-08
NZ_AP022671.1\|WP_173044954.1\|815489_815852_-\|response-regulator	gnl\|CDD\|381133	cd17618, REC_OmpR_PhoB, phosphoacceptor receiver (REC) domain of PhoB response regulator from the OmpR family. The transcription factor PhoB is a component of the PhoR/PhoB two-component system, a key regulatory protein network that facilitates response to inorganic phosphate (Pi) starvation conditions by turning on the phosphate (pho) regulon whose products are involved in phosphorus uptake and metabolism. PhoB is a member of the OmpR family of DNA-binding response regulators that contains REC and winged helix-turn-helix (wHTH) DNA-binding output effector domains. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	3.19895e-28
NZ_AP022671.1\|WP_173044950.1\|813017_814892_-\|HAMP-domain-containing-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	6.85655e-54
NZ_AP022671.1\|WP_173044929.1\|798912_800004_+\|LPS-export-ABC-transporter-permease-LptG	gnl\|CDD\|275201	TIGR04408, LptG_lptG, LPS export ABC transporter permease LptG. Members of this family are LptG, one of homologous, two tandem-encoded permease genes of an export ATP transporter for lipopolysaccharide (LPS) assembly in most Gram-negative bacteria. The other permease subunit is LptF (TIGR04407). [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other].	7.6949e-78
NZ_AP022671.1\|WP_173044924.1\|797237_797453_-\|cold-shock-domain-containing-protein	gnl\|CDD\|278729	pfam00313, CSD, 'Cold-shock' DNA-binding domain.	1.69585e-30
NZ_AP022671.1\|WP_173044931.1\|800161_801418_+\|beta-ketoacyl-ACP-synthase-II	gnl\|CDD\|274452	TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II. 3-oxoacyl-[acyl-carrier-protein] synthase 2 (KAS-II, FabF) is involved in the condensation step of fatty acid biosynthesis in which the malonyl donor group is decarboxylated and the resulting carbanion used to attack and extend the acyl group attached to the acyl carrier protein. Most genomes encoding fatty acid biosynthesis contain a number of condensing enzymes, often of all three types: 1, 2 and 3. Synthase 2 is mechanistically related to synthase 1 (KAS-I, FabB) containing a number of absolutely conserved catalytic residues in common. This model is based primarily on genes which are found in apparent operons with other essential genes of fatty acid biosynthesis (GenProp0681). The large gap between the trusted cutoff and the noise cutoff contains many genes which are not found adjacent to genes of the fatty acid pathway in genomes that often also contain a better hit to this model. These genes may be involved in other processes such as polyketide biosyntheses. Some genomes contain more than one above-trusted hit to this model which may result from recent paralogous expansions. Second hits to this model which are not next to other fatty acid biosynthesis genes may be involved in other processes. FabB sequences should fall well below the noise cutoff of this model. [Fatty acid and phospholipid metabolism, Biosynthesis].	0
NZ_AP022671.1\|WP_173044952.1\|814948_815485_-\|purine-binding-chemotaxis-protein-CheW	gnl\|CDD\|223905	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms].	2.35738e-32
NZ_AP022671.1\|WP_173044958.1\|817052_817814_-\|adenosylcobinamide-amidohydrolase	gnl\|CDD\|376682	pfam01955, CbiZ, Adenosylcobinamide amidohydrolase. This prokaryotic protein family includes CbiZ which converts adenosylcobinamide (AdoCbi) to adenosylcobyric acid (AdoCby), an intermediate of the de novo coenzyme B12 biosynthetic route.	5.89152e-58
NZ_AP022671.1\|WP_173044948.1\|809555_812981_-\|Hpt-domain-containing-protein	gnl\|CDD\|223716	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms].	4.39547e-130

>NZ_AP022671.1|WP_173044940.1|805977_806919_-|hypothetical-protein
MAGESSDEFQKELVDLFVQEAQEWLQNIHVALDELQQGPDPDRHAALIGILTGGVTNLGGSAATINLPEVERASFGAIPFIEALTDPQKSFSVQDFLSLCKQLGQIQSALTRATGVSFEDHGETERPAQVQPSVSLEAFLQALCSLPRHPIPGESYNRNLVGAMMDQVEAQIKAGVQQAGVDAIQGYLARMSQSEEAFAQTLDITVDALAERLLLLAEPSRPREGMLEESLKDVTQLQADAQQINAVPAISFLSGLQTFLSVCAQHRVRLAARRIDAVRDRLLVVKNLIHQWIECGRTERAAIDRVLQAGHQA
>NZ_AP022671.1|WP_173044938.1|803733_805878_-|HD-domain-containing-protein
MDDRRTVDLYRRAEHTLTDVAAAIQRQEVPDLECVSEVAAAIGDSVRQNDHLVVHALAGPIGSPLVTNMINVSILSAKIGAGLGYHGEELDRLTLAGLLHDVGLFAVPQSLVMKTGRLTGDERTLIEQHPELGYHVVHKVGSAWAWLADVVRQAHERWNGQGYPNKLKGRAINEFAQIIGVVDVFDALISPRSYRRRFFPHEAVHELIVAERKAFPREVIKALVQQLSAYPLGTLVRLTTGESGAVVRINPDFPLRPVLHIDGGRSHEARELDLSRTPLVAIVETLEPPDTARVAFPSGMPADRRTTPTTSDQFSSLLESLDALATAIQGVVEAGATISTRVKTPEADEESPTVMSGFPVLLDVNFEKELIGLFALEAREWLAQIHAALRQLGEGARASLRPKLYSIMLHGLTNLAKSASTVHQREIERMVTDLLPVLHRVGKQNMRTMTSAVVSLQRGLDRIAAAVHGASSIQSESQLQAAELVEAEPYSAQIEVDLGLSDPRETAGESSDSHPEAGGEIQDADTQHDRSVPVRSLDAVSGASLLNALRDLQQVRSRSMQPTRDVLEAVIVRAEREPMNVTAERIRQILGELDQLDEEFLHEIHSRVPRMSQKLTALREVGVTDFVTTAQLDPVVEEVDALYQAAGHVQAGMISMFLQGLRSFLVVAAYRKTTNLPQRLETVMGRIEALEPMAEQWVSIGRVERVAIAEILPV
>NZ_AP022671.1|WP_173044936.1|802867_803389_-|hypothetical-protein
MAKLVAMWRGEEIQAQAKQYVRSYILFPSGILGMVCMVAGVAGLGYQLFSSGSYTWTTFVMSSVLLLVGILFGWVQTRYHRYLLDTVPDVFAARIRMAVQRTGKKQKTASQATAIDHAGRNFVPVAYLGGIATLLGASTWALTEGSLSPLPALMMPWAGFYWGKLFFWRGIVQ
>NZ_AP022671.1|WP_173044934.1|801738_802857_+|UDP-3-O-(3-hydroxymyristoyl)glucosamine-N-acyltransferase
MPRSDSPVTLTQIHTLVGGTLHGSGETHISHLGSLGEALDDALSFVANDQALRAAGSLRAGALLCHRHIPELSIPQVVVQHPLLAFAQVAQTFFVLPYRPRGIGANLTRGTGVKIGADPSIWPFVTLGDHVTIGARVTLYPGVFVGSGSSVGDDSILYPNVVIREECSIGARVFIHSGTVIGSDGFGYVQHQGRHHKIPQLGGVVIEDDVELGANVTIDRATLGQTIIKKGTKVDNLVQIAHNVTVGEHAIVVAQVGIAGSTTIDHHVMIGGQAGLADHIHVGAQVMIAARAGVNRSLEPNQIVSGAPVMPHETWMKAQAVIPRLPELRQSVRSLEQRMAALENLKKTPEPRKRRVSQSGRKPSGRKRTSSR
>NZ_AP022671.1|WP_173044933.1|801427_801736_+|acyl-carrier-protein
MSDREILQKIIQALAEYLRRDPSSIDETFHLRDDLGLDSMAVIELLYKIEETFNLQIPDQDLPALTTVGAVSAYVQKRLAPQKPAASAKLAKAATTSKKKKA
>NZ_AP022671.1|WP_173044931.1|800161_801418_+|beta-ketoacyl-ACP-synthase-II
MRARVVVTGLGVVSPIGIGISEFWKSALAGRSGISAIRGFDPFPIDGYRSKVAGQVLNFSPEQYIDSVQPDRVDRYAQFALVAAKEALTDSGLQMTRERPHRVGVFVGAGMGGMVMGEREITQLYNHQKPHRVHPNFIPVITLNSASGIVAMAYGAKGPNVTISTACSSSAHALGQGLHCIREGRADAVIVVGADASITPLVFAGFCSLRALSTKHNEQPERASRPFDLGRDGFVMGEGAGALILESLPHAKKRKARIYAEIAGYAATSEAYHMVIPREDGEEVATTMRLALADAGMTASQIDYINAHATSTSIGDAVEAKAIRQLFKSRADKIAINATKSLVGHTLGAAGSLGGIASVLALQTGQIHPTANYDEPDPACTLAGVSRTTQERKIKTALLNAFGFGSNNAAVVFKRFAA
>NZ_AP022671.1|WP_173044929.1|798912_800004_+|LPS-export-ABC-transporter-permease-LptG
MKILFRYLLREYAKIFMMCFSGLMTIYLVIDFFEKVRRFLRYDASWLDVLAYFALKVPAISFQIAPLAILMATLLTLGLLSRSHEITAMRSCGISLPWIASPFLSLATVVALILLLFSSTVIPLASNKAEEIRAIRIEKKPPSTVVKLPQPWARMGADHLLHVATVAIGGEALGGVQLFHFDTTFRLVDMTEAEEARYAGGAWTLYRGFKRIFNRDGSITLNSFERMPVPLTLIPADFTTWLASESESMTFRTIREYTGRLYQNSSQITRLRTDYYGRIAFPFVTIIMVLIGIALSLRRSGVRGGSMAIGIGQALAIGFCYWTTHSIAIAFGRGGALPPIVAGWLTDVLFMSYGLYLMLKVRY
>NZ_AP022671.1|WP_173044926.1|797749_798841_+|LPS-export-ABC-transporter-permease-LptF
MFLRKLLDRYIFTELLSPFLVSLGVLCFVMLTRELLRLVELLVSKGVGIFAVLKVFANLLPSFLVLTLPIAGIIASITAFGRLSFDKELVAMRAAGLSLLRLSQPVFLFAALVFTLTLWLAQWGQPWSSTNLKKVALNLLRDQLVLALERGTFNEPIPKMMIFVSDLGDDPRSTGIFVSDERNADDPRIIVARQYEVLVEPSTNQIALRLLDGVIHSKPDELDEYQQVGFSNYDLKLSLSQSGYTSTEERPSYESIMRQLADSQGKDPAALRRLMEYYKDLAFPTASLVFCILGVPVGIVSKRSGRIGGFAVGVLVVILYYVLNVACEFLVTTAVIPPFAGAWLPNIIFAVITVLWFYKISRE
>NZ_AP022671.1|WP_173044924.1|797237_797453_-|cold-shock-domain-containing-protein
MKTKGTVKWFNDRKGFGFIRLDSGEDVFVHYSALQGEGFKTLKEGENVEFDIVQGAKGPQAANVAKTMVAS
>NZ_AP022671.1|WP_173044922.1|796766_797135_+|PilZ-domain-containing-protein
MAEIIPVNRGKDIFMVTRQQPRFPITFHGTLEYQDRLHQITRSWDLSRKGCRLESRFEAYAGMKVNLLLSLPEGESPILIDRAVVRWCGTREIGLEFQSLLSPYRERLDHTLEKLEAEVSHR
>NZ_AP022671.1|WP_173044944.1|808545_808995_-|hypothetical-protein
MLRAARQQKQTVAAKRAWTVVVFSVGGLKLAARTEDVGGVSPWDQQIPVPSRTPFVNSLIRQEKAVLPVYDLASRLTRSLKGATRLCLMARHVDGPMAICIDEDIPTLHTIEASRIRPTSGLDIATFGSFDHDGSDVAIVALDRLGKQL
>NZ_AP022671.1|WP_173044946.1|809022_809499_-|chemotaxis-protein-CheW
MSLRGHFKAVTAVDSARFLVIRYGTRYCALPSDCVRGVLTVEQAGINGAVTWLGSMYPDVDLAGLLSTFLDKKSREIRTILYSNDRSHAAIRVDEVVGLVEVSREQCQPLPPQFQAEERNWIPGTITYQHDLALILNSEWVLGEIGELALVGPATRHE
>NZ_AP022671.1|WP_173044948.1|809555_812981_-|Hpt-domain-containing-protein
MSAELDRQALIDIFVMEATEAATALAESFHPPGDALPSAVELQSQYVWAHKVRGAAGIYGFTGLATLGELLESTLEQATSIDAALWPHAVGALRGMLESFSAQLEVVRQGGSEDVAVSERWRSEVARLLVQSPGASNADPSSENLPAPHYLIPSIDADVLSYFAPEAEEYLDTVDRLVRRVQEAPGEAETIHALFRTAHTLKGSAHTIGFTVVGDVAHGMEDCLIAVREKHITGSEVLWGAIGYATGVIRILMRRDDGRIAQLQRDVPAAIQRLHAIAQGQAVMAVDQSAVASKPDVHPSVSVVASPIDQSQTTDHSIGQPLQLSDDYLLPQLDPEVLSYFAPEAQEYLESLEAQLLRLEKEPENPELINQLFRTAHTLKGSAYTVGFQAIGDLTHYVEDFMGAVRDGRVKVLPGHADMLLRAIDVVRLLMRRDPTLLDTVRQRYTIASHGLKQLENPAAIVAAMSQSNHSQAIQTQAAAETRDAQDLDSSKQNDARAKDSAGSEDREVIRVSRDRLERLLNLVGELVIGRGRLEQRLRVLEQLSQQVLACKGRLMDSVRSFEEKHTFTLPSVVSNIPAGVRGSHAGQSGSSFPGLSDFGSLEFDKYDDFNILARRISEVTADISESMSQLSGSIRRSHEDMSQLQQLTLGMRDEIARARMVPIGTPFTRFRRATREMARATGKEVTLVTSGEHTEVDTGVVERLVDPLVHLVRNAVYHGIEPSAVRVSIGKPAAGTIYLHASHRGNAVVIEVEDDGAGLDIGKIRTKAVERGLVRADLAKTLPEGEVIKFIFMPGFSTADHVGEQAGRGVGMDVVKRVIESMNGHIDVESVRGIGTKFTLHLPLTLLIATALMVRSGSERYGIPLPSVREVTMLTNGSLQHLGDRSVIQIGDEAIEVQPLQRLLNRAAVGTVEIGKAVVIVRTGVGPIGLVVDELLGRQEIVIKPIASLKSLAHSMFGGATIDPEGRVVLVLDPARLVTGTQKPSIADAVSQEPIAANSEKAFDTSIAPPVSEKKILLIDDSLSIRKFVGRMLETAGYEVETAVDGEEGLRKASAQSYRLILTDLEMPKLNGYEVIQALRSRPQTQQTPIIVMTTRAGDKHRQMAINIGASSYIAKPVEERALIQELERWIGPEVHAGEA
>NZ_AP022671.1|WP_173044950.1|813017_814892_-|HAMP-domain-containing-protein
MARVGMMQQFENLKTQSKLLVTFGVISVIIMFMASLGVWTNKRLSQQADQIYADYTVALIDFNQLLFNVNKYHETLQDLAKAPRAADFKADIGKLAPYKQRAMQLVNNYGMKPLRTSSSGLDEAKGLTDLKAALSGFFSQAEAGVAAIAESFESKALTQSQALQMRELGQLALTVSIAPAYDLVTSRHADQIKTIQAVSSDLNDDAKSLAWNGTLVLVAGGLIAVLLGLALGYWVAHKLALGLGQVASVAQLAANGNYQARAKIASKDELGQMATSFNTMLDRITSLVTSEDERNEMQKRLMNFLVLVSEVGKGDLTKRGEVTADMFGNLADGFNLMISRFGQLLKQVREAADRVNKSAGTLRDSAGQMAGTAKHQADESVKTLSAVEQLAAQMRQVAETAGASSESAKQVLQATERGRVAVQETVQDMQSIRSAVQRMSKQVKALGDRSLEISQIVSTIRDIANQTNLLALNAAIEAAGAGEAGARFAVVADQVRKLAESSTQATREIADLVKVIQSETQDAVVAMEQETQAVEAGSASALRTGEVFNEISGIAQRSAELAQTIASSAVTQTASTDQVGRSIRDFTGGAVATQKATDAARMTVEDMAKLADGLTSSVAQFKLA
>NZ_AP022671.1|WP_173044952.1|814948_815485_-|purine-binding-chemotaxis-protein-CheW
MASAQPSMPVPISQPEKAVPSVGRPHGNGVAPSPGAAALRVAIISLGGELFTVDLQHVREVFVVESITPVPGMPAGLVGVTNLRGAVVPLLDLRGMFGLADDAVLRYAVVLKHGSWQVAVLVDAVPEIRTIARDQFMPSPSGTGDAANPFISGVVKLEDRLRGVLETSVVLSHFENAA
>NZ_AP022671.1|WP_173044954.1|815489_815852_-|response-regulator
MSKIVVVDDSYAELQVIEGVLKGASHSVVSFPNSDKLEEKVATEKPDLIVMDVVMPGRNGFQACRDLKNDERCKNIPIILCTSKGNESDKFWGQQQGANAHIVKPFKGEELLAAVKRVLG
>NZ_AP022671.1|WP_173044956.1|815904_816642_-|DUF3365-domain-containing-protein
MEVIRMRTMTMGALAVFILAGWTGSALAANEGEVAEHLIELVKIGRGVVSEQMANINDQTKGDKGFTGDYMAAQVMDRFKKRTKIDLRIPNAVPQANLYLALVEAEKEVVDEAQPVINKVGISFKGFIPAVFARRTGEHFYKKSGVRLKLTGIDYRNPSNKPDDFEAEVLRMFSDARHPKGQSYVRNTMLDGRPVLRMMDPEYAAASCLGCHGSPKGERDVSGHKKEGWKEGELAGAISVVLPLK
>NZ_AP022671.1|WP_173044958.1|817052_817814_-|adenosylcobinamide-amidohydrolase
MHKRTPNHIDLSYRVADNTLVIDFPRPYRVLSSAPRAGGFAMARSIINHQVEANPLARPAAGTRPGLQRMSWSGPARYLRNVASRLSAAEPSVGLMTAVALKQLVTASERVGRFSVMCFCTVGVTNAVRAGESASHTGSPKQRDQTGTINVILVTNACLSRSAMVGAVQVATESKTATLLECRVPSSSGKHMATGTGTDAVVIASSGHGPKVSYSGTHTIIGSIIGRLVANCVYEGLQRSSRWQHNLRPSKAR
>NZ_AP022671.1|WP_173044960.1|817806_818928_-|pyridoxal-phosphate-dependent-class-II-aminotransferase
MSGTVTKRPTHGGNVHQASRILRKPLNAIVDFSASVNPLGPSKRVMRALADMLPVIRHYPDPECSALRYALGVRFNLPADWFVVGNGSSELIDTVPRALSIRSAAIAGPAFSEYAAAVEKHGGRSTLLSAKRIEQYRPSCGEIVRWIRSRKLQRRGVDAVFVCQPNSLTGQIWEQEELETILRAAHRARAWTILDETFAEYCSAVSIVPRLQHFPLVVVLRSFTKFYAIPGLRIGYSISCPSTAERIRRLQPPWSVNVLAQHAAIVSMQDRGYMDRSLAFMLKERPRFMESLASIGGLTVFDSHANFVMIELPPGWRADAVTMMLGRKGILIRDCSQTPGLNGRTIRLAVRTSLENDRLVRLLRKTLRIHTNA
>NZ_AP022671.1|WP_173044962.1|818912_819872_-|cobalamin-biosynthesis-protein-CobD
MAMTAADVISACALDAVIGDPRRFPHPVRMMGSASVWFEQVIRASCRRPLALRIAGTVLALGLPAVAAIGGWAVIAVATGIHEWIGFVVNLWLASTVLAWRDLMDHSNRVLDALRQTDLVEARKAVSLIVGRDTDPLSEQEIVRATVETVAESASDGVVAPLFYLTLGGVPLALAFKAVSTLDSLVGHQDDQYREFGWASARLDDLLNWIPSRLTGWLMVAAGAIVMRDLQAATRGATVLLRDGHKHASPNSGRPEAAMAGAIGVQLGGESYYDGKRVVRPYLGEPVHALSPNHIEQAQRIMSVSYVLGIAGSIVCLAL

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Crispr_ID: NZ_AP022671_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022671_2

1215463-1215580

Orphan

Consensus_repeat	Method
TCGGCATCAACGAGCGCTGCCGCGACGGTGCAGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP022671_2

>merge|NZ_AP022671|2|1215463-1215580|CRISPRCasFinder
TCGGCATCAACGAGCGCTGCCGCGACGGTGCAGATGCTGCTTAATACAACTGTGCCCGCGACCAGTGCACCCACTGGAGCCTCGGCGTCAACGAGCGCTGCCGCGACGGTGCAGATGC

>NZ_AP022671|2|2|1215463-1215580|CRISPRCasFinder
TCGGCATCAACGAGCGCTGCCGCGACGGTGCAGATGC	TGCTTAATACAACTGTGCCCGCGACCAGTGCACCCACTGGAGCC
TCGGCGTCAACGAGCGCTGCCGCGACGGTGCAGATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022671.1\|WP_173045602.1\|1217140_1222534_+\|IPT/TIG-domain-containing-protein	unknown	unknown	gnl\|CDD\|225750
NZ_AP022671.1\|WP_173051375.1\|1206812_1208276_+\|efflux-transporter-outer-membrane-subunit	unknown	unknown	gnl\|CDD\|273830
NZ_AP022671.1\|WP_173045616.1\|1227682_1229248_+\|DUF748-domain-containing-protein	unknown	unknown	gnl\|CDD\|377502
NZ_AP022671.1\|WP_173045596.1\|1214405_1214624_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|270754
NZ_AP022671.1\|WP_173045614.1\|1226992_1227508_-\|archease	unknown	unknown	gnl\|CDD\|376680
NZ_AP022671.1\|WP_173045579.1\|1203600_1203960_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022671.1\|WP_173045610.1\|1225550_1226387_+\|transposase	unknown	unknown	gnl\|CDD\|224854
NZ_AP022671.1\|WP_173045612.1\|1226700_1226898_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022671.1\|WP_173045604.1\|1222587_1222974_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022671.1\|WP_173045581.1\|1204302_1205169_+\|formate/nitrite-transporter-family-protein	unknown	unknown	gnl\|CDD\|376497
NZ_AP022671.1\|WP_173045608.1\|1225233_1225599_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022671.1\|WP_173045585.1\|1208280_1209774_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|185090
NZ_AP022671.1\|WP_173045592.1\|1212074_1212431_-\|PilZ-domain-containing-protein	unknown	unknown	gnl\|CDD\|377796
NZ_AP022671.1\|WP_173045583.1\|1205190_1206783_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|129794
NZ_AP022671.1\|WP_173045618.1\|1229261_1230404_-\|aminopeptidase-P-family-protein	unknown	unknown	gnl\|CDD\|223085
NZ_AP022671.1\|WP_173045590.1\|1210320_1212033_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_AP022671.1\|WP_173045600.1\|1216322_1217144_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022671.1\|WP_173045594.1\|1212589_1214041_-\|RtcB-family-protein	unknown	unknown	gnl\|CDD\|376465
NZ_AP022671.1\|WP_173045588.1\|1209859_1210177_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380377
NZ_AP022671.1\|WP_173045606.1\|1223014_1224565_+\|RHS-repeat-associated-core-domain-containing-protein	unknown	unknown	gnl\|CDD\|274730

Protein	Function_ID	Function_description	E-value
NZ_AP022671.1\|WP_173045602.1\|1217140_1222534_+\|IPT/TIG-domain-containing-protein	gnl\|CDD\|225750	COG3209, RhsA, Rhs family protein [Cell envelope biogenesis, outer membrane].	3.74044e-36
NZ_AP022671.1\|WP_173051375.1\|1206812_1208276_+\|efflux-transporter-outer-membrane-subunit	gnl\|CDD\|273830	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined. [Cellular processes, Detoxification, Transport and binding proteins, Porins].	1.36923e-85
NZ_AP022671.1\|WP_173045616.1\|1227682_1229248_+\|DUF748-domain-containing-protein	gnl\|CDD\|377502	pfam05359, DUF748, Domain of Unknown Function (DUF748).	3.32979e-08
NZ_AP022671.1\|WP_173045596.1\|1214405_1214624_+\|hypothetical-protein	gnl\|CDD\|270754	cd05603, STKc_SGK2, Catalytic domain of the Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. SGK2 shows a more restricted distribution than SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1. The SGK2 subfamily is part of a larger superfamily that includes the catalytic domains of other STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	0.00757028
NZ_AP022671.1\|WP_173045614.1\|1226992_1227508_-\|archease	gnl\|CDD\|376680	pfam01951, Archease, Archease protein family (MTH1598/TM1083). This archease family of proteins, has two SHS2 domains, with one inserted into another. It is predicted to be an enzyme. It is predicted to act as a chaperone in DNA/RNA metabolism.	3.18896e-36
NZ_AP022671.1\|WP_173045610.1\|1225550_1226387_+\|transposase	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.25637e-11
NZ_AP022671.1\|WP_173045581.1\|1204302_1205169_+\|formate/nitrite-transporter-family-protein	gnl\|CDD\|376497	pfam01226, Form_Nir_trans, Formate/nitrite transporter.	1.76023e-67
NZ_AP022671.1\|WP_173045585.1\|1208280_1209774_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|185090	PRK15136, PRK15136, multidrug efflux MFS transporter periplasmic adaptor subunit EmrA.	2.67181e-92
NZ_AP022671.1\|WP_173045592.1\|1212074_1212431_-\|PilZ-domain-containing-protein	gnl\|CDD\|377796	pfam07238, PilZ, PilZ domain. PilZ is a c-di-GMP binding domain which is found C terminal to pfam07317. Proteins which contain PilZ are known to interact with the flagellar switch-complex proteins FliG and FliM. This interaction results in a reduction of torque generation and induces CCW motor bias. This domain forms a beta barrel structure.	2.96914e-08
NZ_AP022671.1\|WP_173045583.1\|1205190_1206783_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	2.37474e-68
NZ_AP022671.1\|WP_173045618.1\|1229261_1230404_-\|aminopeptidase-P-family-protein	gnl\|CDD\|223085	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism].	1.76202e-56
NZ_AP022671.1\|WP_173045590.1\|1210320_1212033_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	3.25076e-23
NZ_AP022671.1\|WP_173045594.1\|1212589_1214041_-\|RtcB-family-protein	gnl\|CDD\|376465	pfam01139, RtcB, tRNA-splicing ligase RtcB. This family of RNA ligases (EC:6.5.1.3) join 2',3'-cyclic phosphate and 5'-OH ends. They catalyze the splicing of tRNA and may also participate in tRNA repair and recovery from stress-induced RNA damage.	0
NZ_AP022671.1\|WP_173045588.1\|1209859_1210177_-\|cupin-domain-containing-protein	gnl\|CDD\|380377	cd06122, cupin_TTHA0104, Thermus thermophilus TTHA0104 and related proteins, cupin domain. This family contains bacterial proteins including TTHA0104 (also called TT1209), a putative antibiotic synthesis protein from Thermus thermophilus. TTHA0104 is a cupin-like protein. The cupins are a functionally diverse superfamily originally discovered based on the highly conserved motif found in germin and germin-like proteins. This conserved motif forms a beta-barrel fold found in all of the cupins, giving rise to the name cupin (cupa is the Latin term for small barrel).	4.05538e-50
NZ_AP022671.1\|WP_173045606.1\|1223014_1224565_+\|RHS-repeat-associated-core-domain-containing-protein	gnl\|CDD\|274730	TIGR03696, tRNA_nuclease_WapA, RHS repeat-associated core domain. This model represents a conserved unique core sequence shared by large numbers of proteins. It is occasional in the Archaea Methanosarcina barkeri) but common in bacteria and eukaryotes. Most fall into two large classes. One class consists of long proteins in which two classes of repeats are abundant: an FG-GAP repeat (pfam01839) class, and an RHS repeat (pfam05593) or YD repeat (TIGR01643). This class includes secreted bacterial insecticidal toxins and intercellular signalling proteins such as the teneurins in animals. The other class consists of uncharacterized proteins shorter than 400 amino acids, where this core domain of about 75 amino acids tends to occur in the N-terminal half. Over twenty such proteins are found in Pseudomonas putida alone; little sequence similarity or repeat structure is found among these proteins outside the region modeled by this domain.	6.67481e-16

>NZ_AP022671.1|WP_173045596.1|1214405_1214624_+|hypothetical-protein
MSHRHAPLWFPAMLPLVACAILLGMVDTAPARTIGARAPVTESGNEVQLSQLSQDDQAQVAVAFDATLANAN
>NZ_AP022671.1|WP_173045594.1|1212589_1214041_-|RtcB-family-protein
MNLQTDMQVNRISDQIWEIPPSEKPGMLVPARIYASRNILQSMDRGVFDQVTNVACMPGIVRHALCMPDGHWGYGFPIGGVAAFDVHSGVISPGGVGYDVNCGMRLIRTDLTLGDVQPRLERLLDTLFRNVPAGVGAGGFVRLDRKASDAVMVGGARWCVEQGYGWHGDLARIEEGGAIDGADPSTVTDRAVGRGINQLGTLGSGNHYLEIQVVSNDGVFDPATAAALGVSGHEQIVVMVHCGSRGFGHQVASDYLKMFEKAMRRHGITVKDPQLACAPFHSPEGRDYFSAMNCAANTAFANRQVITHQVRNAFTEVFGLSGEELGMELVYDVAHNIAKVERYAEGELLVHRKGATRAFGPGHPELADAFRETGQPVICGGSMETGSYLLVGTDQAVAETFGSTMHGAGRIMSRAQAKKMVRGDQLQQQMKRRGILVKAISMSGLAEEAGCAYKNISEVVETVERAGITKKVAELRPIGNIKG
>NZ_AP022671.1|WP_173045592.1|1212074_1212431_-|PilZ-domain-containing-protein
MEQRKTQRFPVRFRSSFTSLNVVGGDGNLMDLSLRGCRVESRIEVRPGTSLELRIQVFDDDPPLVVQEGIVRWSRTQQFGLEFVTMAPDEWARLQHTVTQLELHPYQHGQHGDTSTAA
>NZ_AP022671.1|WP_173045590.1|1210320_1212033_+|tetratricopeptide-repeat-protein
MNRSERRRQDAQLGKGRITGPSGAESWLHQGRAHQQAGRFVEAEQAYLQALELAPRHAEAFHLLGLIAYRLNRLDDAISYLVRAIEYGPSAPVYRFNLGILLQKAGRLEEAVTTYKKAVELNGKYGDAYINLGNALRDSGQLQQAVRAYRQALAINPSHADTHNNLGVALKESGDLEEALTCYRRAIELKPVHLEAMNNLGLALMETGTLREAIASFQQALAIQPDYQKALYNLGVAWSWAGDENKAVNCLTRVARSRHDHGKPMTDSSVFRSRIKHDREQIDYLLHQHKLGDEQRPYLTALAECQRRLEQDSSPGNRVRMTAADLSGLAPSFNRMLFHHPPDRVSHGAINRTLDAHAVEERYHQAHPGVTFIDDLLNAEALEALRRFCWEATIWKKDYENGYCGAFLGDGFASPLLFQIAEELRLKFPGIFGAHRLTQAWAFKQDSARRGLNIHADAAAVNVNFWITPDEANLNKETGGLVVYDKEAPREWNFKDYNSEQSKPKIMGWLNGVGARAIRIPYRANRAVVFNSDLFHESDDISFRDEYLSRRINITLLYGYRLRDQPLPRT
>NZ_AP022671.1|WP_173045588.1|1209859_1210177_-|cupin-domain-containing-protein
MKVISLSDYQQFSHDKMKKNNIFETPRFFCDVYCFEAGQEQKGHIHGEQDKVYLVLEGEGTFQVGNEKQVLRQWQGTMAPAGEEHGVKNHTGQRLKVLVFVAPNP
>NZ_AP022671.1|WP_173045585.1|1208280_1209774_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MNTVDPPSPHLNEEAVHRQRTGRLLCVAVLAAIALAVYATYWWTYSRYWVETDNAYVTGNLVPVAAQATGIVTQVLFEETQFVNRGDVMLRLDEHEAYAALGRARGRLGDTVRRINALFFTQRQLAEKLSARRARLAVVSHDVTRYRQASPSGAVSKQILQNALDQLEGLRAEVRETQAEYDALDAQIGGTTVMDHPAVELAKHEFIEAHLEYARQQIRAPVSGYIAKRKAQVGDRVKPGTNLMTIVPLDHLWVEANLRETEMGDIRPGQPAEVRVDLYGGKHTFHGTVEGLVPGTGSPFALLPPDNSTGNFIHITERVPVRIALPADEIREYPIRPGLSTVTKIHVSESGQSVWSSLAKADTDEYQTDVYGDELTSAESLAKTVIAGNVRRTDQDIELAQNLSGYPSPRTSHRSPSTLSDLDRPNDDLTSGPARRQHEPLPEFYVPPRSPDLGSTFFPLAPAAGPNSKLGPATGPPLPSRSPTDSRFTPGSDHRMR
>NZ_AP022671.1|WP_173051375.1|1206812_1208276_+|efflux-transporter-outer-membrane-subunit
MQAGMLLVLAGCAWIPKGDPPAVYIESPELRETIEEVTSRLHKWPDDRWWEQFQNPELNALMESALRDNPGLKVASARLKEAMGLVRVEGARLLPFLEADASLTYERISQHGVFAALNPEVAGARILLGVINPLSFRYEFDFWGKNRATLEAALGQAAAEEAETAEVKLRLTTGIARAYFRGQALHRQLELVRAIVAIRRQLRRLAETRFRLGLDNDLAVKQSIADYETAVKREAGVRDQLAVQRHLLARLAGKGPDDTAGLFSRATVIPRHVPVPEHLSMGLLIHRPDLASALYRADSAARLVKVAKTQFYPTIDLTAFVGFNALTLTKGADKLANFLFSGQSFSYGFAPGLRLPWFEGGRLRGELAVHRAEYDSAVELYNDTLLGALREVADSLSAWQSTREMLESHERLVAAVGEDLRLAKVRLVSGLDDDREVLRHRYPLLEQEYALRALEGDQLVAAVDLIEALGGGYHNADIEKRPSQGAN
>NZ_AP022671.1|WP_173045583.1|1205190_1206783_+|DHA2-family-efflux-MFS-transporter-permease-subunit
MAEIEHPRLQGWHFVLLNIILGLAHMLVLFNAGSYVALLPHAAGDLGGVLPSFGTWAQTDFLIALALAFPLARWCASRFGERRVFTVAFIVYAAASALCVIGGGIATFVPARILLGLAGGVTLPLGQTLLLEEYPDRLKSVGLSIWGLFTLMPFTLGLATGGWLADTWSWRALFILNIPLALLVAASTAALLHGRAVEIRRERFDLAGFLLLAVIFGGLQTMLNEGNDVDWFDDPVLRIVLVIVALAIPAWIIWELGEPRPAVDIRLFGRRNFFVGLGCLGIGFLAVQGLSALFVVQLQTLMGYSSTLAGLVFLPMMLLGIPVIAVMHELAKHVDVRLLACLNALGFAATFYWIGLYDDPQSYDHFFWPMVLEGVFLGSFFTPLTVLTLHGLTGERIMRAAEAANLFRIAAGALGITWQGIIVFRRKPFHQLQLSDHFGGRMSASYDPLQQITLKFQEAGFDPAVIPYKLQLLVKQQAGILALNDAFFVSSFLCMGLAVAVWFAQSTRVPTRSPVRAVKELRAEELMEQP
>NZ_AP022671.1|WP_173045581.1|1204302_1205169_+|formate/nitrite-transporter-family-protein
MDYVKPHDVVTEMVSAGALKLDVPVRHLLIRGALAGAYLGVATSMAVTAAVETGSWLVGSLLFPFGLCLAILLKTEIITGSFALLPCAAVDGKPNASIGRVLKNWGWVFLGNLLGSTAYAILLAIVLTTGGDAAISTTGAKLVTIAEAKTTYYASHESAGLVTVFTKGMLCNWMVGLAVVFAFATTSLTGKIVAIWGPTLMFFSQGFEHAVVNMFVIPVGMLLGAHVTLSDWWLWNQIPVTLGNLVGGMLFTGLAIYITHRPASADAPAPADRSHSVADEHPRYSPTY
>NZ_AP022671.1|WP_173045579.1|1203600_1203960_+|hypothetical-protein
MNRRSPTRLAALVLVSIICPAQHSVSAGSLERVTVQLDGPSCLPRHDIISALSTLPGIHLTDISVPDHLLIDIDPSLLDRHQALANITGAIGSPGCRIQPMQSCISASFAASVRPATKE
>NZ_AP022671.1|WP_173045600.1|1216322_1217144_+|hypothetical-protein
MLSSTTKITVTGSITANGGGQNFCAPSALGNGSGGAVRLVAPEVAVPGTIQAVGVPSCTPSNPGRIRIETVVPGPIAPTNPTASIVNVLGPITANSVPALINLPTLTITSVGGVAPPPTPGGSYTTADVILPGTATNPVPVTLTATNTPVPTSYTVKMIPQFAAPVSTTVNSSGSFAMSTATANVTFPNGRISALQVFAGFTLTAALAPIIDGEPAEQVLIAAGFGESSSLTLVTKSGKEIPVSRLSYDDQVKVAAALHELQARTQGSKEAAR
>NZ_AP022671.1|WP_173045602.1|1217140_1222534_+|IPT/TIG-domain-containing-protein
MTRRYASGGLLIGLLAVLAASPVAQAQTGTDFFLHGTGPDNNPPTLFLNTTAPAAAAAKFRDSAGVNFNGGNLWKDIGTWPAASSLTTGTLTALSDLHVWLGLKNSDDQGTQFDLRAEVLKNGAVIATGLTRCITGIVRNANQAKEAIVAFGSVPSIPFDGTTDQLAIKISTRIGTNPNDTKCPGHNNAVGLRLYFDAANRQARFDATFVTQQTPTITNFTPTEGPAGTSVTITGTNFDPVPANNTVKFNGVTAAVTAASAISLTATVPVGATTGPITVTTAAGTATSATNFTVLAAPAITGFSPATGRAGVTVTVTGTNFVNVQSVTFNGIPATSVIVQNATTLAAVVPPAATTGPLAVATAGGVATSTGHFVVIPTQDMQLSVLPATITIPSSGEASFAVALAGSGGFTNVATLAATGLPGGMTASFRNATLTAGQSTRLTVTTNGAVPAGPISLTVTATGLVNGVSTTRSVPVTAQVLASGVTMLVGLVLDEDDQPVKGALVTLGAMQASTDDGGNFAMQNPPVGAEQLLLIDGGPASTPQHSLPVIPYKVTIVAGQANVLSFVPHLHFQKTTGLVDISNSGVERLVTDPELPGFQMTIPAGAVITGWDHQENTQVSVRQVPLDRTPIPPLPGDRVGVSSYMDYFDKPGGGTPSEPIPITFPNDLGAPPGTQVELWYYDEAPDGSRPNQMAQYGTGTVSANGSQIVPDIDPATGKPFGQPRFCCGSVMPAWLRTLLDFVSGLVGGPAVAAGGEGEAGGDPVDLGTGIFVLKKTDLVLPGRLPVTITRTYRTLGTNLGPFGLGTSHTYDVILRQDGDLRRLLLPGGARVAFPKQPDGTFRNLTDPAYRGAVLTEGGGGHSLRFKDGAVWAFGPPSFNVSFLIAQADRNGNQLTFTRTGSTGTLTTITDAVGRQVQFTYINDRVTEILDPLGRRVTYAYDNSGRLATVMDPEGGVTRYTYDTQGRMLTLTDARGLTFLTNEYDGAGRVSRQTQADGGLWQFAYQTNSGVITQTTVTDPRGHVTTGRFNGQGYTLERTDGQGQATRSLRDVATNQVLATTDPLGRTTQFEYDAAGNVTKIVDPALHETRFTYDAQFNRVTTITDALNHVTEFTYDPANGNLLTVKDPLNHVTTITYNAFGQPLTVTDPLTHQTTFAYDANGNLITTTDPLGNATQRAYDAVSRLTNLTDPRQLQTQFRYDGLNRVTEIADARQGITRFGYDPNGNLLSVQDAKLQPTTYTYDSMDRLGTRTDALDRSESYHYDPAGNLTQFTDRKSQPATFTYDALDRRTRADYADSSFTTFTYDAVGRLTRATDSVSGAIDFFYDNLDRLILEVTPLGAVAYAYDAIGRRTTMTVAGQAPVTYQYDAASRLTQVVQGSLIVGIGYDAAGRRTSLTYSNGTSTAYTYDNASRLTHILHQGPSVTTIEELTYTYDAAGNRTSLTRANSTASLLPAAVASATYDAANQQTAFAGTTHTFDANGNLTNDGTNTYTWDARNRLIGLSGGATASFSYDPLGRRFSKTLGGVTTQFVYDGNDIAQELQSGVSVAAYLRSLNIDEPFIRQTGSGNEHYHADVLGSSLALSDAQGASSTTYTYEPFGKTTVTGTSVNMFQFTGRENDETGLYYYRARYYSPRFQRFTREDPIRLRGKQLNIYAYVKNNPIVLKDPTGLTACACGEIATVITRVGPLGALIGNHLADEARTLAASMAGSGQVPHNNQFDAFRHCYWSCRMTQVMTPDAAAIIGDIHEECDSVQLPQEYNMDSYNNMVGRTFGMPGTDCRSACTGAMQGGVLQTFPY
>NZ_AP022671.1|WP_173045604.1|1222587_1222974_+|hypothetical-protein
MKRSSIIAVVLIGLGLVIVGVDTFYVKVFCGVEITINNQGTKEITNLVIAIRNASEKILKLGPGESTSFALQPTTETHITFTFSDSAGRVHESQGVYLDRHLAGNVRIEIKDDAGVAWAELIKTCLID
>NZ_AP022671.1|WP_173045606.1|1223014_1224565_+|RHS-repeat-associated-core-domain-containing-protein
MSVPSVWTRADYADSSFTTFTYDAVGRLTRATDSISGAIDFFYDNLDRLVLELSPQGAVAYEYDAIGRRITMTVAGQAPVMYQYDAASRLTQVAQGSLSIGIGYDAAGRRTTLTYPNGTSTSYTYDNASRLLTITHNGPAGVIESLTYTYDAAGNRTSLTRANGAASVLPASVTSATYDAANQQTAFAGTTHTFDANGNLTNDGTNTYTWDARNRLIGISGGATANFVYDPLGRRESKTIGGTTTQFVYDGNDIAQEIQGGTVAAAYLRSLNIDEPFIRQTGVAHEYYHADALGSSLVLSNAAGGSVTTYAYEPFGKTTVAGTNANTLQFTGRENDGTGLYYYRARYYSPLLPRFTNEDSLDLSEIILLAQGDQTEVPDPEFIALLRSTVLANPLLGNRYSYALSNPVNFSDPTGEIIPQLIGCTLGAGISVGVDVFSGRKINLLDASLGCALGAFGGFGYGKAFKFGLHDPHHYFPLFGRNLSHFQVNWWQKGVSGSGNAFRIPIPPSIYKIFKP
>NZ_AP022671.1|WP_173045608.1|1225233_1225599_+|hypothetical-protein
MMRERSWRPVSPSGSWENAQAGYTITGGTVTATTVVDPRGNVTTTRFNNRGYPLTTSDAVGQAGTTVRNTANQAASSTDALDRTTQCTPKGSGLAIIHFPWYGLAPWHGPYASNTLGRSIM
>NZ_AP022671.1|WP_173045610.1|1225550_1226387_+|transposase
MARPLRIEYPGAVYHVTNRGNARHNIVANDRDRAQFLTLLAHVIGRFGWLCHAYCLMDNHYHLLLETPRPNLSRGMRQLNGRYTQAYNRRHQRVGHLFQGRFTAILVEKDAHLLELCRYVVLNPVRAKMVTHPRLWTWSSYRGTAGETAGPVWLTMDWVWGQFGSRLREAQLHYRQFVAEGRGGPRPWDHVQGQIYLGSEAFIEQHQPNRVIQEIPRRQTHAKRPPLHAVFQRRGRETQLIAVAYRQYGYRLHEIATHLGVHYATVSRRLKQAEQAHV
>NZ_AP022671.1|WP_173045612.1|1226700_1226898_-|hypothetical-protein
MGITMLRHKHFQLDQSKLDRAKSVLGVKTEAEAIERALTLVVDETELDKALKRTKGRTQIRKIFR
>NZ_AP022671.1|WP_173045614.1|1226992_1227508_-|archease
MRPVCAACYNRVRASKFQSFSDHFNQTMTWSFRFLDDIAVADIAFEAQGNTVEELFSGATRALIETLADPGTIGAVWQREIHRSESDLSALLFDWLSDIVYWKDAEGVVFHDAPLTVTSEAGHWTLNARLIGAPVNRAAQELRNDVKGVTKHLYEVNQEAERWQARVVLDV
>NZ_AP022671.1|WP_173045616.1|1227682_1229248_+|DUF748-domain-containing-protein
MKRRWWLLLVLTAGLFVIATIALFYIDEPLRVYAERQFNQNVDGYTLSIGRLRFHPIGLSVDFEESTLIQNDHPEPPVATIPRWHASIHWQAILNGRLVSDHYIDRPVLRITQTQAAKEAKDDKGLAERGWQQAILSVYPLKIDVFQLHEADLTYADNPKSKPLHLSRLNVTAENIRNVRSRERTYPSTVHVDGEVFDSGNLVVDGSADFLSEPHFGADVDVSLQSIHLDDVVPLTGRFNVQLRKGTVSGKGHLEYSPHIKQARVLDLELEGVRVDYVHARSTARSELHVAEKTVETAKRLNNHPEWLIRLDRAVLRNSEMGFVNQAVDPAYRVFLSEVDLNLENFSNQFSEGTAHLQLTGKFMGTGQTEAHATFRPETHSPDFEIQVKMVKTKMRSMNDLLRSYSNFDVADGFFSFFSELKVKDGTIAGYVKPLFKDVSVYDPDQDKDKSLLQKLYEAVVGGTLELLANRDRKEVATQADVSGKIQRPETSTLQVVLKLIQNAFFKAILPGFEQEAKRAG
>NZ_AP022671.1|WP_173045618.1|1229261_1230404_-|aminopeptidase-P-family-protein
MSRSPQSHKATVFIAASEQDSNLYYATKFIAPDPFIYLEIKGERILVMNDLEMDRAKSQSSVDRVLSYSEIERRARDQGVASPGSIDIVHVVLREAKIKHLLLPANFPFSHASRLQELGYHLHAKPDPFYEQRVIKTSEEVRHIEAAQRATEQSVAAAHEVVRRSDIKDGHLWFDGGVLTSERIKKLINVKLMEADCVAQHTIVAGGEQACDPHNEGSGPLPAHRSIIFDVFPRSATTRYFADMSRTVVRGTPSPELVKLFHIVKDAQEEAIEKIKDGADGMKIHRGICDRFEKAGYKTGLVNGRMQGYFHGTGHGVGLDIHEAPRISRTGSLLQEGHVVTVEPGLYYPGLGAVRIEDMVLVTADGCRNLTDFPKVLELG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1392479 : 1400481

Paramecium_bursaria_Chlorella_virus(16.67%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_173045863.1\|1392479_1394309_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	A7IW18	Paramecium_bursaria_Chlorella_virus	1.1e-116	42.2
WP_173045865.1\|1394316_1395879_-	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	A0A2K9L821	Tupanvirus	7.3e-24	32.0
WP_173045867.1\|1395875_1396547_-	DUF502 domain-containing protein	A0A2I7S9X1	Vibrio_phage	4.6e-15	30.3
WP_173045869.1\|1396679_1397348_+	dTMP kinase	M1PSC7	Streptococcus_phage	3.1e-40	45.8
WP_173045871.1\|1397349_1398378_+	DNA polymerase III subunit delta'	D9ZNI9	Clostridium_phage	3.4e-09	28.0
WP_173045873.1\|1398417_1400481_+\|tRNA	methionine--tRNA ligase	A0A1V0SHR2	Klosneuvirus	9.5e-96	38.1

DBSCAN-SWA_2

1416904 : 1429513

Pithovirus(12.5%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_173045906.1\|1416904_1418428_-\|protease	DegQ family serine endoprotease	W5SAB9	Pithovirus	2.9e-09	29.0
WP_173045908.1\|1418430_1419354_-	class I fructose-bisphosphate aldolase	NA	NA	NA	NA
WP_173045910.1\|1419383_1420394_-	class 1 fructose-bisphosphatase	A0A1V0SKX4	Klosneuvirus	6.1e-64	43.3
WP_173045912.1\|1420536_1421352_-	DUF3108 domain-containing protein	NA	NA	NA	NA
WP_173045913.1\|1421356_1422757_-	phosphomannomutase/phosphoglucomutase	A0A127AWJ1	Bacillus_phage	1.1e-58	31.4
WP_173045915.1\|1422768_1424223_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	NA	NA	NA	NA
WP_173051389.1\|1424225_1424714_-	HAD hydrolase family protein	E3T535	Cafeteria_roenbergensis_virus	5.5e-18	37.5
WP_173045918.1\|1424867_1425719_-	dTDP-4-dehydrorhamnose reductase	A0A1C9C5B7	Heterosigma_akashiwo_virus	1.2e-07	29.0
WP_173045920.1\|1425706_1426735_-	dTDP-glucose 4,6-dehydratase	M1IBX1	Acanthocystis_turfacea_Chlorella_virus	3.9e-66	42.5
WP_173045922.1\|1426738_1427470_-	NTP transferase domain-containing protein	I7I009	Enterobacteria_phage	1.8e-49	44.8
WP_173045924.1\|1427617_1429513_-	polysaccharide biosynthesis protein	L7Y3T9	Megavirus	5.8e-23	26.6

DBSCAN-SWA_3

1914633 : 1923180

Tupanvirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_173046772.1\|1914633_1916475_+	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	5.4e-50	27.6
WP_173046774.1\|1916543_1916930_-	PilZ domain-containing protein	NA	NA	NA	NA
WP_173046776.1\|1916985_1918278_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	8.6e-79	40.5
WP_173046778.1\|1918395_1919193_+	alpha/beta fold hydrolase	R9RXH6	Mycobacterium_phage	7.6e-09	26.1
WP_173046780.1\|1919189_1919834_-	GTP cyclohydrolase I FolE	S4VV34	Pandoravirus	6.3e-46	49.3
WP_173051412.1\|1919848_1920250_-	6-carboxytetrahydropterin synthase	NA	NA	NA	NA
WP_173046782.1\|1920369_1920690_-	iron-sulfur cluster insertion protein ErpA	A0A2H4N7M3	Lake_Baikal_phage	2.2e-20	48.0
WP_173046784.1\|1920755_1921103_-	(2Fe-2S)-binding protein	NA	NA	NA	NA
WP_173046786.1\|1921129_1922431_-	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA
WP_173051413.1\|1922613_1923180_-	urate hydroxylase PuuD	A0A1B1IVR4	uncultured_Mediterranean_phage	2.0e-19	38.9

DBSCAN-SWA_4

4120800 : 4132634

uncultured_virus(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_173050788.1\|4120800_4121442_-	response regulator	W8CYM9	Bacillus_phage	4.2e-10	36.1
WP_173050790.1\|4121460_4123743_-	response regulator	A0A1V0SGX0	Hokovirus	5.5e-44	32.1
WP_173051563.1\|4123912_4124263_-	hypothetical protein	NA	NA	NA	NA
WP_173050792.1\|4124390_4126031_-	chaperonin GroEL	A0A219YK78	uncultured_virus	3.8e-172	60.2
WP_173050793.1\|4126078_4126378_-	co-chaperone GroES	A0A221S4G8	uncultured_virus	2.2e-14	49.4
WP_173050795.1\|4126638_4127631_-	RNA polymerase factor sigma-32	A0A248SJA5	Salicola_phage	2.0e-27	29.8
WP_173050797.1\|4127729_4128923_+	NarK/NasA family nitrate transporter	NA	NA	NA	NA
WP_173050800.1\|4129019_4130249_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.3e-95	48.0
WP_173050802.1\|4130290_4130836_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	3.2e-27	42.7
WP_173050804.1\|4130838_4131297_+	transcription antitermination factor NusB	NA	NA	NA	NA
WP_173050806.1\|4131293_4132634_+	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	3.5e-22	35.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_AP022671

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection