CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP015031	Basfia succiniciproducens strain JF4016 chromosome, complete genome	2 crisprs	cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DEDDh,DinG	1	2	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP015031_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015031_1

581127-582353

TypeI

Consensus_repeat	Method
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	PILER-CR
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	CRISPRCasFinder
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	CRT

18 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NZ_CP015031_1

>merge|NZ_CP015031|1|581127-582353|PILER-CR,CRISPRCasFinder,CRT
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAGCGCTGCGGCTACTTTGCGCATTTCCGCAAATTTCGGTTTCAATTCACGCTCTCGTGTGAGAGCGGAGAAATGACCCCCTTTTTTGTGGGCAAATGAGGGATGTTTCAATTCACGCTCTCGTGTGAGAGCGGAGCTTCTGCTGATGAGCAGCTTCGAATGGATGTCGAGTTTCAATTCACGCTCTCGTGTGAGAGCGGAGGTAAGTTACATCACGACAGTACAAAGCAAAAAGCAGTTTCAATTCACGCTCTCGTGTGAGAGCGGAGAAAAATAATGTGGATGGTGGGGAGTATCGAGAAGTTTCAATTCACGCTCTCGTGTGAGAGCGGAGAATTGTGGACGCCGATTTTTATGCCTTGAACGGATGTTTCAATTCACGCTCTCGTGTGAGAGCGGAGGATCGCATAACACGCCTACGCTTAACTATCGGCGTGTTTCAATTCACGCTCTCGTGTGAGAGCGGAGATTTTCTTTCACCTTTGGCGGATTAGCCTTGAAACGTTTCAATTCACGCTCTCGTGTGAGAGCGGAGGTCCCGATAAAACCGATCATTGTGCCAGCAAAGCTCGAGTTTCAATTCACGCTCTCGTGTGAGAGCGGAGTTACAACAAGCGGCAACTAAACTACTTGAGCGCGTTTCAATTCACGCTCTCGTGTGAGAGCGGAGAACAGCGGCTACCGACACTATCACTTTTGCTGATGTTTCAATTCACGCTCTCGTGTGAGAGCGGAGGCCGCCGAGCCGTACGGACAATACCATCAAGCCGGTTTCAATTCACGCTCTCGTGTGAGAGCGGAGTTTGCAAGGAGCACGGAAAATTTTTAGGCGTGTGGTTTCAATTCACGCTCTCGTGTGAGAGCGGAGCATCATAAGTTTCAACACCTTGTGAAATAATTAAAGTTTCAATTCACGCTCTCGTGTGAGAGCGGAGTTGCTCTAATGATGGCAATTGGTCGCATTATGTTGTTTCAATTCACGCTCTCGTGTGAGAGCGGAGAATTACACGCCACGACCTAAAGCGACAGGCGCGGGTTTCAATTCACGCTCTCGTGTGAGAGCGGAGGCATTGACTATGTCAAAGCGCATCTTGCTGTGGTGTTTCAATTCACGCTCTCGTGTGAGAGCGGAGCTAATTTTTCCAACTGATTATCAAAATTAATTTGTTTCAATTCACGCTCTCGTGTGAGAGCGGAG

>NZ_CP015031|1|1|581127-582353|PILER-CR
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	CGCTGCGGCTACTTTGCGCATTTCCGCAAATTTCG
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	AAATGACCCCCTTTTTTGTGGGCAAATGAGGGAT
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	CTTCTGCTGATGAGCAGCTTCGAATGGATGTCGA
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	GTAAGTTACATCACGACAGTACAAAGCAAAAAGCA
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	AAAAATAATGTGGATGGTGGGGAGTATCGAGAA
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	AATTGTGGACGCCGATTTTTATGCCTTGAACGGAT
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	GATCGCATAACACGCCTACGCTTAACTATCGGCGT
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	ATTTTCTTTCACCTTTGGCGGATTAGCCTTGAAAC
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	GTCCCGATAAAACCGATCATTGTGCCAGCAAAGCTCGA
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	TTACAACAAGCGGCAACTAAACTACTTGAGCGC
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	AACAGCGGCTACCGACACTATCACTTTTGCTGAT
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	GCCGCCGAGCCGTACGGACAATACCATCAAGCCG
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	TTTGCAAGGAGCACGGAAAATTTTTAGGCGTGTG
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	CATCATAAGTTTCAACACCTTGTGAAATAATTAAA
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	TTGCTCTAATGATGGCAATTGGTCGCATTATGTT
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	AATTACACGCCACGACCTAAAGCGACAGGCGCGG
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	GCATTGACTATGTCAAAGCGCATCTTGCTGTGGT
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	CTAATTTTTCCAACTGATTATCAAAATTAATTT
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG

>NZ_CP015031|1|1|581127-582353|CRISPRCasFinder
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	CGCTGCGGCTACTTTGCGCATTTCCGCAAATTTCG
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	AAATGACCCCCTTTTTTGTGGGCAAATGAGGGAT
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	CTTCTGCTGATGAGCAGCTTCGAATGGATGTCGA
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	GTAAGTTACATCACGACAGTACAAAGCAAAAAGCA
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	AAAAATAATGTGGATGGTGGGGAGTATCGAGAA
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	AATTGTGGACGCCGATTTTTATGCCTTGAACGGAT
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	GATCGCATAACACGCCTACGCTTAACTATCGGCGT
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	ATTTTCTTTCACCTTTGGCGGATTAGCCTTGAAAC
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	GTCCCGATAAAACCGATCATTGTGCCAGCAAAGCTCGA
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	TTACAACAAGCGGCAACTAAACTACTTGAGCGC
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	AACAGCGGCTACCGACACTATCACTTTTGCTGAT
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	GCCGCCGAGCCGTACGGACAATACCATCAAGCCG
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	TTTGCAAGGAGCACGGAAAATTTTTAGGCGTGTG
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	CATCATAAGTTTCAACACCTTGTGAAATAATTAAA
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	TTGCTCTAATGATGGCAATTGGTCGCATTATGTT
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	AATTACACGCCACGACCTAAAGCGACAGGCGCGG
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	GCATTGACTATGTCAAAGCGCATCTTGCTGTGGT
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	CTAATTTTTCCAACTGATTATCAAAATTAATTT
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG

>NZ_CP015031|1|1|581127-582353|CRT
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	CGCTGCGGCTACTTTGCGCATTTCCGCAAATTTCG
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	AAATGACCCCCTTTTTTGTGGGCAAATGAGGGAT
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	CTTCTGCTGATGAGCAGCTTCGAATGGATGTCGA
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	GTAAGTTACATCACGACAGTACAAAGCAAAAAGCA
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	AAAAATAATGTGGATGGTGGGGAGTATCGAGAA
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	AATTGTGGACGCCGATTTTTATGCCTTGAACGGAT
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	GATCGCATAACACGCCTACGCTTAACTATCGGCGT
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	ATTTTCTTTCACCTTTGGCGGATTAGCCTTGAAAC
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	GTCCCGATAAAACCGATCATTGTGCCAGCAAAGCTCGA
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	TTACAACAAGCGGCAACTAAACTACTTGAGCGC
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	AACAGCGGCTACCGACACTATCACTTTTGCTGAT
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	GCCGCCGAGCCGTACGGACAATACCATCAAGCCG
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	TTTGCAAGGAGCACGGAAAATTTTTAGGCGTGTG
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	CATCATAAGTTTCAACACCTTGTGAAATAATTAAA
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	TTGCTCTAATGATGGCAATTGGTCGCATTATGTT
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	AATTACACGCCACGACCTAAAGCGACAGGCGCGG
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	GCATTGACTATGTCAAAGCGCATCTTGCTGTGGT
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG	CTAATTTTTCCAACTGATTATCAAAATTAATTT
GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015031.1\|WP_011200153.1\|579000_579471_-\|6,7-dimethyl-8-ribityllumazine-synthase	unknown	unknown	gnl\|CDD\|234606
NZ_CP015031.1\|WP_090654490.1\|592373_594644_-\|ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|181649
NZ_CP015031.1\|WP_090654471.1\|577540_578536_-\|thiamine-phosphate-kinase	unknown	unknown	gnl\|CDD\|235583
NZ_CP015031.1\|WP_090654488.1\|590024_592310_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
NZ_CP015031.1\|WP_041639680.1\|577027_577528_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182942
NZ_CP015031.1\|WP_090654486.1\|588598_589276_-\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
NZ_CP015031.1\|WP_090654483.1\|585050_585665_-\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NZ_CP015031.1\|WP_011200157.1\|582537_582831_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP015031.1\|WP_011200146.1\|573368_573632_+\|2Fe-2S-ferredoxin-like-protein	unknown	unknown	gnl\|CDD\|182668
NZ_CP015031.1\|WP_011200149.1\|576387_577017_-\|LysE-family-transporter	unknown	unknown	gnl\|CDD\|273358
NZ_CP015031.1\|WP_090654473.1\|578559_578991_-\|transcription-antitermination-factor-NusB	unknown	unknown	gnl\|CDD\|234686
NZ_CP015031.1\|WP_090654475.1\|579688_580900_+\|tyrosine-transporter	unknown	unknown	gnl\|CDD\|273293
NZ_CP015031.1\|WP_011200145.1\|572132_573263_+\|ribonucleotide-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|181647
NZ_CP015031.1\|WP_102030689.1\|594963_596229_-\|DegQ-family-serine-endoprotease	unknown	unknown	gnl\|CDD\|273938
NZ_CP015031.1\|WP_090654630.1\|585721_586705_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
NZ_CP015031.1\|WP_090654469.1\|575527_576340_-\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|223366
NZ_CP015031.1\|WP_090654484.1\|586712_588602_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|378245
NZ_CP015031.1\|WP_090654477.1\|582937_583951_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP015031.1\|WP_090654467.1\|573694_575155_-\|DASS-family-sodium-coupled-anion-symporter	unknown	unknown	gnl\|CDD\|279307
NZ_CP015031.1\|WP_090654481.1\|583985_585017_-\|virulence-RhuM-family-protein	unknown	unknown	gnl\|CDD\|379118

Protein	Function_ID	Function_description	E-value
NZ_CP015031.1\|WP_011200153.1\|579000_579471_-\|6,7-dimethyl-8-ribityllumazine-synthase	gnl\|CDD\|234606	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional.	4.90198e-81
NZ_CP015031.1\|WP_090654490.1\|592373_594644_-\|ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|181649	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha.	0
NZ_CP015031.1\|WP_090654471.1\|577540_578536_-\|thiamine-phosphate-kinase	gnl\|CDD\|235583	PRK05731, PRK05731, thiamine monophosphate kinase; Provisional.	3.16687e-124
NZ_CP015031.1\|WP_090654488.1\|590024_592310_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	7.01426e-57
NZ_CP015031.1\|WP_041639680.1\|577027_577528_-\|hypothetical-protein	gnl\|CDD\|182942	PRK11068, PRK11068, phosphatidylglycerophosphatase A; Provisional.	1.26172e-60
NZ_CP015031.1\|WP_090654486.1\|588598_589276_-\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	1.07406e-117
NZ_CP015031.1\|WP_090654483.1\|585050_585665_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	3.72967e-39
NZ_CP015031.1\|WP_011200157.1\|582537_582831_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	5.64529e-32
NZ_CP015031.1\|WP_011200146.1\|573368_573632_+\|2Fe-2S-ferredoxin-like-protein	gnl\|CDD\|182668	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein.	1.33559e-26
NZ_CP015031.1\|WP_011200149.1\|576387_577017_-\|LysE-family-transporter	gnl\|CDD\|273358	TIGR00949, Uncharacterized_membrane_protein_YahN, The Resistance to Homoserine/Threonine (RhtB) Family protein. [Transport and binding proteins, Amino acids, peptides and amines].	1.02685e-56
NZ_CP015031.1\|WP_090654473.1\|578559_578991_-\|transcription-antitermination-factor-NusB	gnl\|CDD\|234686	PRK00202, nusB, transcription antitermination factor NusB.	2.40074e-63
NZ_CP015031.1\|WP_090654475.1\|579688_580900_+\|tyrosine-transporter	gnl\|CDD\|273293	TIGR00837, Tyrosine-specific_transport_protein, aromatic amino acid transport protein. The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family- tyrosine/tryptophan subfamily (TC 2.A.42.1) The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli. [Transport and binding proteins, Amino acids, peptides and amines].	6.38175e-130
NZ_CP015031.1\|WP_011200145.1\|572132_573263_+\|ribonucleotide-diphosphate-reductase-subunit-beta	gnl\|CDD\|181647	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed.	0
NZ_CP015031.1\|WP_102030689.1\|594963_596229_-\|DegQ-family-serine-endoprotease	gnl\|CDD\|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NZ_CP015031.1\|WP_090654630.1\|585721_586705_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	3.83991e-140
NZ_CP015031.1\|WP_090654469.1\|575527_576340_-\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|223366	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism].	2.45831e-135
NZ_CP015031.1\|WP_090654484.1\|586712_588602_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0
NZ_CP015031.1\|WP_090654477.1\|582937_583951_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NZ_CP015031.1\|WP_090654467.1\|573694_575155_-\|DASS-family-sodium-coupled-anion-symporter	gnl\|CDD\|279307	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region. There are also some members in this family that do not match the Prosite motif, and belong to the subfamily SODIT1.	3.19257e-129
NZ_CP015031.1\|WP_090654481.1\|583985_585017_-\|virulence-RhuM-family-protein	gnl\|CDD\|379118	pfam13310, Virulence_RhuM, Virulence protein RhuM family. There are currently no experimental data for members of this group or their homologs. However, these proteins are implicated in virulence/pathogenicity because RhuM is encoded in the SPI-3 pathogenicity island in Salmonella typhimurium.	1.01269e-152

>NZ_CP015031.1|WP_090654475.1|579688_580900_+|tyrosine-transporter
MKNKTFGSALLVAGTTIGAGMLAMPLTSAEMGFTYTMALLFLLWILLSYSALLFVEVYQTVQRKDAGIATLAEQYFGMVGRVLATLSLVIFMYAILSAYVTGGGSLLAGVLPFLGEHAAPISIIAFTVILGIFIVISTGAVDGLTRLLFMIKLVAFVLVLTMMLPLVQGENLMAMPLKEFLIISASPVFFTSFGFHVIIPSINNYLDGDIKRLRAAIIGGTALPLVAYILWQMATHGVFPQVKFVEIINNDPTLNGLVDATYHVTGSNLISGSVRLFSTLALVTSFLGVSLSLFDCLDDLLKRINIKAGRLALGVLTFLPPLAFALFYPEGFIAALGYAGQMFTFYGLVLPVGLAWRARKLHPNLPYRVIGGNLTLLIALLLGLLIMNVPFLIEGGYLPKVIG
>NZ_CP015031.1|WP_011200153.1|579000_579471_-|6,7-dimethyl-8-ribityllumazine-synthase
MKVLEGGLAAPNAKVAVVVARFNSFINDSLVEGAVDALKRIGQVKDENITLVRVPGAYELPLAVRRLADSKKYDAIVALGTVIRGGTAHFEYVAGGASNGIGHVSLESNVPVAFGVLTTENIEQAIDRAGTKSGNKGAEAALVALEMVNLLAQINA
>NZ_CP015031.1|WP_090654473.1|578559_578991_-|transcription-antitermination-factor-NusB
MTEQIKKRPSPRRRARECAVQALYSFQISQNPVETVELSFVTDQDMKGVDMPYFRKLFRQTVENIPSVDSTMAPYLDRSADELDPIEKAILRLSVYELKYELDVPYKVVINEAIEVAKTFGAEDSHKYINGVLDKIAPALARK
>NZ_CP015031.1|WP_090654471.1|577540_578536_-|thiamine-phosphate-kinase
MAEGEFDLINRYFALSKQIPRQDVILSIGDDCAITQLKADQRLAVTTDTMVENSHFYPTIPPRALGYKAVATNLSDLAAMGATPAWISLALTLPKTDSHWLNEFSKGMFEILNRYDVTLIGGDTTKGEIPTVTITAQGLLGDYALCRHQAKIGDWIYVSGTLGDALAGFYLNRDIYEGKKSAVGFDEDFFIQRNLYPIPRIEFGKTLAKYRLANAALDISDGFMGDLMHILERSQVSAVVNLEDLPLSPQLSAYYGREKAELMALQGGEDYELCFTVSDENKTKLDQYLAPLNVPYTCVGQICAAEDNPVIRLQRYKQEVNLSIHSFDHFK
>NZ_CP015031.1|WP_041639680.1|577027_577528_-|hypothetical-protein
MAHSSSTTNPLDKLSLRNPVHLLALGFGSGLIRPAPGTWGSLAAIIIGAPILHWIGTVPFLVLILLGFALGVYLCQKTADDMGVHDHGAIVWDEFIGIFITLLAIPQISLFWCIAAFVLFRIFDIIKPYPISYFDKRLESGFGIMVDDVLAAVYAAISLFLLHYII
>NZ_CP015031.1|WP_011200149.1|576387_577017_-|LysE-family-transporter
MLNLIIVHFFGLVTPGPDFFYVSRMAASNSRRNVICGIIGITLGVAFWAASAMLGLAILFTTMPVLHGVIMLLGGGYLAYLGLLMVRSRTNATFAPLSAEELNKTTTVKKEIMKGLFVNLSNAKAIIYFASVMSLILVHITQVWQMLLAFAIILVETFIYFYLISVLFSRPFAKKFYSRYSRYIDNVAGIIFLIFGMILAYTGVMEMMG
>NZ_CP015031.1|WP_090654469.1|575527_576340_-|4-hydroxy-tetrahydrodipicolinate-reductase
MTLKLAIVGAGGRMGRQLIQAVQAAEGVELGAAFERKGSSLIGADAGELAGLGELGIKVAEDLTAEKDKFDIIIDFTRPEGSLEHIKFCVANNKKLILGTTGFDDAGKQAIGKAAEKTAIVFASNYSVGVNLVFKLLEKAAKVMGDYSDIEIIEAHHRHKVDAPSGTALSMGEHIAKTLGRDLKVNGVFSREGITGERKRTDIGFSTIRAADVVGEHTVWFADIGERVEISHKASSRMTFANGAVRAAKWLANKQIGLFDMTDVLDLNNL
>NZ_CP015031.1|WP_090654467.1|573694_575155_-|DASS-family-sodium-coupled-anion-symporter
MNIQTSAPKVEVRLGFKLQGLLIAVLVGIAILLIPTPEGLSTKAWGMFALFVATIVAIIAKAMPMGAATLVALVISGLSGLTPLSPAKGEVGMLSGFSNGTIWLIAIAMFLSRAVIKTGLGKRIALYFVARFGKRMMGVAYGIALADVVIGPGIPSASARGGGIMYPIMQSIADAYNSKPGPTARRAGAFLAIAVSQIDTIVCTMFLTAMAGNPLIAELAKSQGVEITWMTWFLGAIVPGIVSLILLPYFVYLIYPPELKDTPKMAEMAKEELNSMGKMSQAEWILALDFILLLLLWTVGDLVFHIPATVSAFVGLVILLLTNIMSWKNIISETAAWDTMFWFAVLVMMANALNKYGTISWISTHIADSVGSFSWPVAFTILVLVYFYTRYFFASAMAHISAMYLAFVAAAIAVGTPPIIAAIGLGYTSTLSMSLTQYAGGPGPALYGSGYNSTGQWWGVSFAVSILSLAIWFSVGGVWMKLLGWW
>NZ_CP015031.1|WP_011200146.1|573368_573632_+|2Fe-2S-ferredoxin-like-protein
MKIYQVRIENYQLTFSHNNKASLLSELEALGLKPEYQCRSGYCGSCRVKLKKGRVSYKELPLAFVNPDEILLCCCQAEEDLEIELLS
>NZ_CP015031.1|WP_011200145.1|572132_573263_+|ribonucleotide-diphosphate-reductase-subunit-beta
MAYTTFSQNKNDQLKEPMFFGQNVNVSRYDQQKYETFEKLIEKQLSFFWRPEEVDVAQDRIDYAALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEEIIKRAKDISAYYDDLIRDSQLYNLFGEGTYKVEGKECKVTLRNLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEALHLTGTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFLAAAEQEKAWADYLFKDGSMIGLNKDILVQYVEYITNIRMQAVGLPLPFQARSNPIPWINAWLVSDNVQVAPQEVEISSYLIGQIDSKVDTSDFGDFDL
>NZ_CP015031.1|WP_011200157.1|582537_582831_-|CRISPR-associated-endonuclease-Cas2
MMILITYDVSLENEGGERRLRHIAKHCLDYGIRVQYSVFECEVTPAQWVELKDKLLNTYDKETDSLRFYQLGSKWKHRVEHYGAKRAIDMFRDILII
>NZ_CP015031.1|WP_090654477.1|582937_583951_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MRKLQNTLYITTQGSYLHKERETLVVEQDRKKVAQLPVHSIGHIFCFGNVLVSPFLMGFCGENNVNLAFFTETGRYLGRLQGRQSGNVLLRRAQYRISEQNPIPIARNIIAAKIQSAKRVLQRRLRNHGEHEEVQAAVMALNFSLQQLKRAENLDLIRGIEGDAAARYFGVFQHLLAEKNGFGFDGRNRRPPRDGVNALLSFLYSILGKDISGALQGVGLDPQVGFLHADRPGRDSLAQDLLEEFRAWWVDRMVLSLINRGQIKPQDFVTEVGGAVNMKPEARRLLFQSLQAKKQEKIVHPFLQEEVEIGLLPYIQAMLLARHLRGDLAEYPPFLMR
>NZ_CP015031.1|WP_090654481.1|583985_585017_-|virulence-RhuM-family-protein
MKNKSQSELSTTRSSAAEYLTFVAATGGSAQSMEMRYENENIWLTQKMMATLYDVSVPAINQHLKRIFDDGELLPEAVIKDYLITADDGKQYRTKHYNLQAIVAVGFKINNARAVQFRKWAGQIVKDYTIQGWTMDVDRLKKGHMFTDEYFERQLEYIREIRLSERKFYQKVTDLYATAFDYDEHASTTRDFFALVQNKLHWAVHRHTAAELIVARANADKQHMGLTHWESAPHGKIIRSDVAVAKNYLNPQELDYLERIVSLYLDFAELQAMRKIPMSMQDWAKRLDGFLEFNGNEILTGPGKISHEQAKLHAETEFEKYRIVQDRLFESDFDRLLKKSEEN
>NZ_CP015031.1|WP_090654483.1|585050_585665_-|CRISPR-associated-protein-Cas4
MRIISLSALQHYAFCPRQCALIHNEQLWAENFLTAQGNALHERVDSGEPETRKGVRFERSVHVSAEQLGISGILDMVECEIQTGKLKPVEYKRGKPKPKLSDEIQLCAQALCLEEMTGKKVEEGALWYMQTRHRHPVIFSTELREKTLQVINEVKTLLESGITPPPNYSKSCKACSLVDLCQPKLLERDKSGKYVVGLFNEQKN
>NZ_CP015031.1|WP_090654630.1|585721_586705_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MMSIQNRYEFVYFFDVTNGNPNGDPDAGNMPRLDPESSKGLVTDVCLKRKIRNFVDMTSSGQAGYEIFVRENSVLNLQIERAYTESEEVIENLKAWKEYEKNKKKKNKNNSEEGISKPKRHYEDIAQDWMCENFFDVRTFGAVMSTGKEKEETDSDGEKSKIAKRAGQVRGPVQLAFAQSIDPIVPLELSITRVAVTSEAEKEEGKDTMMGRKYIVPYALYRVHGFISANLAAKTGFSEEDLQKLWQALQLMFEHDRSAARGEMAARKLIVFKHDSALGSVPAHKLFDSVKVERINGESGTPATGFADYQISIEKDKFNGITVEELL
>NZ_CP015031.1|WP_090654484.1|586712_588602_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MILSSLARYYQRLAKETDSVGNPKVPSYGFSEEKIGWVLVINQDGQLVDVVPNLSDGKKPLAKSMVVPQSFKRPGVTPKPFFLWDKTAYVLGVESNKDKATAKEQPFVISQKTFEAFKQSHLELFKDSQDLGLQAVCRFLEKWQPEHFSQPPCLTEMLDANLVFKLDGCSGYIHQREAAQTLWADLLKDDNAEQGICLISGANAPIARLHPAIKGVFGGQSSGGSIISFNKESFASFGKEQGSNAPVSEASAFAYTTTLNYLLREKAHRLSIGDTSTVFWAEADNSANAEAAVGFLASVFAPPDDEQESKKVFYILEQIAKGRPLQEVAPELSPDTRFYILGLAPNAARISVRFWLDTTFGQLADNMARYWRDLHIEPPAWRGKPPAILRILLETTPKRKGADGRLKKSESKDIPPQLAGEYMRSILTGRAYPKTMLTRMIGRIRSDGYISGLRVAVIKAVINRNSLYKEELTMGLNEETKDIPYRLGRLFAIIELAQSSALGELNAGVRDKFYGGASSSPHSTFPILLDNYRTHIAGLRKGKKAKWVKGDSKKLANWLEAKVGEIVGVFDAETPFPRHLSLEEQGRFVVGYYHQRFKKYNKQEDSNIPDDIEQANHLTDDVNAEDEEN
>NZ_CP015031.1|WP_090654486.1|588598_589276_-|type-I-C-CRISPR-associated-protein-Cas5
MANRIRLHIWGDYACFTRPEMKVERVSYDVITPSAARGILSAIHWKPAINWVIDKIYVLKPIRFESVRRNELGAKISESKISGAMKRKSVADLYTVIEDDRQQRAATVLKDVAYVIEAHAVMTSKAGTDENTTKHIEMFKRRALKGQCFQQPCMGVREFPAHFALIDDNDPLPLSQLSESELNRDLGWMLHDIDFEHGNTPHFFRAELKNGVIDVPPFYAEEVKR
>NZ_CP015031.1|WP_090654488.1|590024_592310_-|CRISPR-associated-helicase/endonuclease-Cas3
MMTNTKKVYYAHSEKDLPHEQWQTFSSHAENVAKLAAQFAEIFNAYQLAYNTGLLHDLGKYTPAFDKRLHGGPSVDHATAGAKIAIERWGFPLGKISAFCIASHHTGLVNGDGEGDNRSTLKQRLSVPFGKGNLPELDPIWQSELPLPEKLVSPDLTPDPYNPSFSLAFFIRMLYSCLVDADFLDTEAFYANLKQQDIDRGNAPSLDQLHQQFNWFISDFRERKKVLQPQTEEEQRNAKLNRLRSQILDHAVEQAQQEPGLFSLTVPTGGGKTFTSMAFALEHAKKYGMQRIIYVIPFTSIIEQNAQEFRKAFGEFGEAAVLEHHSTFDDEKLLDKDTKDKLKLASENWDMPIVVTTAVQFFESLFADKSSRCRKLHNIANSVIILDEAQMLPLNLLLPIMQSIKELARNYHSSIVMCTATQPAIQAQHGFYCGFENVREIAPNPTALFADLRRTSVQHIGMQSDKDLIEKLTENQQILIIVNNRRHARSLYEQAKQLDGTFHLTTLMCAKHRSQMLEQIRQHLQAGRSCRVIATSLIEAGVDVDFPLVMRAEAGLDSVAQAAGRCNREGKKLAEQSFVWVFQPEQQWKVPPELSLYSAVMRSTVRRYSKDLLSVEAINHYFSGVYEQKGKDLDNKQILEKCHAAGKTLDFPFQTIAKEFRMIESHMLPLIIPFDKEAEKRIEELRYAEKVGGLLRKLQPYTVQIPKESLEALFKAGRIEAINEKQFGNQFYSLIGLDLYDEVAGLDWEDLGFIKVEGMVF
>NZ_CP015031.1|WP_090654490.1|592373_594644_-|ribonucleoside-diphosphate-reductase-subunit-alpha
MNKALMVTKRDGQVEPLDLDKIHRVITWAAEGLENVSVSQVELRSHIQFYEGIRTSDIHETIIKAAADLISKDAPDYQYLAARLAIFHLRKKAYGHFDPPRLYEHVKKLVRLGKYDESLLSDFSREEWDEMDNFLDHSRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAASLFSKYPAETRLDYIHRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIECDDSLDSINATSSAIIKYVSQRAGIGINAGAIRALGSPIRDGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATVYFPMWHLEVESLVVLKNNRGVEENRARHMDYGVQINRTMYQRLIKGGDITLFSPSDVPGLYEAFFADQSKFEELYVKYEQDPTIRKRTVKAVDLFSLLMQERASTGRIYVQNVDHCNTHSPFDPAVAPVRQSNLCLEIALPTKPLNNINDEDGEIALCTLSAFNLGKIDDLDELENLADLAVRSLDALLDYQDYPVPAAKRSSLGRRALGIGVINYAYYLAKNGVRYSDGSANNLTHRTFEAIQYYLLKASMNLAKELGACEYFNETTYAKGILPIDTYKKDVDNLTSEPLHYDWEQLRTEILEFGLRNSTLTALMPSETSSQISNATNGIEPPRGHISVKASKDGILKQVVPDYENLSDKYELLWDIPNMDGYLHLVGIMQKFVDQSISANTNYDPKRFEDDKVPMKILLKDLLTAYKYGLKTLYYQNTRDGADDAQEDLDDGCAGGACKI
>NZ_CP015031.1|WP_102030689.1|594963_596229_-|DegQ-family-serine-endoprotease
MLEKVLPAVVSIAVEGNQKIAKRSFDIPEEFKFFFGEDFFGDNSSKSSSRKFRGLGSGVIINAEKGYVLTNNHVIDNADKITVLLQDGREFKGKILGKDSQSDIALVQLENPKNLTEIKFADSDKLRVGDFTVAIGNPFGLGQTVTSGIISALGRSTGSDSGAYENYIQTDAAVNQGNSGGPLINLNGELIGINTAILSPSGANAGIAFAIPSNMANNLAQQIGEFGEVRRGMLGIKGGELNADLAKAFHVDAQQGAFVSEVLPGSAADKAGIKAGDVIIAMNGQKVSSFAEMRAKIATSGAGKEIELTYLRDNKKENVKVTLQADDQAQSTANAEAVIPALEGAELTNFNENGKKGVKLSKVAENSPAAQRGLKTGDLIIGVNRIAIEDLTQLRKAMENKDSVIALNIERGNNNFYLLIQ

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Crispr_ID: NZ_CP015031_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015031_2

980793-980884

Orphan

Consensus_repeat	Method
GGGGGAGCGATATTTTGCCTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP015031_2

>merge|NZ_CP015031|2|980793-980884|CRISPRCasFinder
GGGGGAGCGATATTTTGCCTATTACAATAGCGCTAATGTCATTCAGTTCATTCCCTCCCCCGCAAAGTCGGGGGAGCGATATTTTGCCTATT

>NZ_CP015031|2|2|980793-980884|CRISPRCasFinder
GGGGGAGCGATATTTTGCCTATT	ACAATAGCGCTAATGTCATTCAGTTCATTCCCTCCCCCGCAAAGTC
GGGGGAGCGATATTTTGCCTATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015031.1\|WP_090653937.1\|978378_979476_-\|porin	unknown	unknown	gnl\|CDD\|225744
NZ_CP015031.1\|WP_090653939.1\|979878_980742_+\|SAM-dependent-methyltransferase-TehB	unknown	unknown	gnl\|CDD\|183450
NZ_CP015031.1\|WP_090653943.1\|981748_982804_-\|molybdenum-ABC-transporter-ATP-binding-protein-ModC	unknown	unknown	gnl\|CDD\|182993
NZ_CP015031.1\|WP_090653941.1\|981302_981707_-\|endonuclease-domain-containing-protein	unknown	unknown	gnl\|CDD\|238509
NZ_CP015031.1\|WP_011200502.1\|966310_966901_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|368781
NZ_CP015031.1\|WP_165898047.1\|987210_988047_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP015031.1\|WP_090653935.1\|975214_977866_-\|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type	unknown	unknown	gnl\|CDD\|236500
NZ_CP015031.1\|WP_011200505.1\|968873_969800_+\|DUF3298-domain-containing-protein	unknown	unknown	gnl\|CDD\|378702
NZ_CP015031.1\|WP_090653950.1\|985682_986654_+\|ferrochelatase	unknown	unknown	gnl\|CDD\|234585
NZ_CP015031.1\|WP_050738259.1\|969819_970824_+\|DUF3298-and-DUF4163-domain-containing-protein	unknown	unknown	gnl\|CDD\|378702
NZ_CP015031.1\|WP_011200519.1\|985264_985693_+\|hotdog-fold-thioesterase	unknown	unknown	gnl\|CDD\|161843
NZ_CP015031.1\|WP_041640202.1\|970897_971455_-\|endopeptidase	unknown	unknown	gnl\|CDD\|236773
NZ_CP015031.1\|WP_090653978.1\|982790_983519_-\|molybdate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|181841
NZ_CP015031.1\|WP_165898014.1\|986908_987223_+\|transposase	unknown	unknown	gnl\|CDD\|225511
NZ_CP015031.1\|WP_090653929.1\|966999_968730_+\|arginine--tRNA-ligase	unknown	unknown	gnl\|CDD\|223097
NZ_CP015031.1\|WP_090653948.1\|984475_985249_+\|TOBE-domain-containing-protein	unknown	unknown	gnl\|CDD\|182640
NZ_CP015031.1\|WP_090653946.1\|983588_984350_-\|molybdate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|182641
NZ_CP015031.1\|WP_090653933.1\|973205_975089_-\|pyruvate-dehydrogenase-complex-dihydrolipoyllysine-residue-acetyltransferase	unknown	unknown	gnl\|CDD\|236999
NZ_CP015031.1\|WP_090656434.1\|988310_989579_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|273555
NZ_CP015031.1\|WP_090653931.1\|971646_973074_-\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|180579

Protein	Function_ID	Function_description	E-value
NZ_CP015031.1\|WP_090653937.1\|978378_979476_-\|porin	gnl\|CDD\|225744	COG3203, OmpC, Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane].	1.60805e-46
NZ_CP015031.1\|WP_090653939.1\|979878_980742_+\|SAM-dependent-methyltransferase-TehB	gnl\|CDD\|183450	PRK12335, PRK12335, tellurite resistance protein TehB; Provisional.	0
NZ_CP015031.1\|WP_090653943.1\|981748_982804_-\|molybdenum-ABC-transporter-ATP-binding-protein-ModC	gnl\|CDD\|182993	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC.	0
NZ_CP015031.1\|WP_090653941.1\|981302_981707_-\|endonuclease-domain-containing-protein	gnl\|CDD\|238509	cd01038, Endonuclease_DUF559, Domain of unknown function, appears to be related to a diverse group of endonucleases.	1.26637e-42
NZ_CP015031.1\|WP_011200502.1\|966310_966901_-\|VOC-family-protein	gnl\|CDD\|368781	pfam06185, YecM, YecM protein. This family consists of several bacterial YecM proteins of unknown function.	4.76476e-87
NZ_CP015031.1\|WP_165898047.1\|987210_988047_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	8.45957e-61
NZ_CP015031.1\|WP_090653935.1\|975214_977866_-\|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type	gnl\|CDD\|236500	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed.	0
NZ_CP015031.1\|WP_011200505.1\|968873_969800_+\|DUF3298-domain-containing-protein	gnl\|CDD\|378702	pfam11738, DUF3298, Protein of unknown function (DUF3298). This family of bacterial protein C-terminal regions is highly conserved but the function is not known. Several members are annotated as being endo-1,4-beta-xylanase-like, but this could not be confirmed, and the structure can be defined as a heat-shock cognate 70kd protein 44kd ATPase.	7.30306e-06
NZ_CP015031.1\|WP_090653950.1\|985682_986654_+\|ferrochelatase	gnl\|CDD\|234585	PRK00035, hemH, ferrochelatase; Reviewed.	7.73616e-159
NZ_CP015031.1\|WP_050738259.1\|969819_970824_+\|DUF3298-and-DUF4163-domain-containing-protein	gnl\|CDD\|378702	pfam11738, DUF3298, Protein of unknown function (DUF3298). This family of bacterial protein C-terminal regions is highly conserved but the function is not known. Several members are annotated as being endo-1,4-beta-xylanase-like, but this could not be confirmed, and the structure can be defined as a heat-shock cognate 70kd protein 44kd ATPase.	1.18208e-07
NZ_CP015031.1\|WP_011200519.1\|985264_985693_+\|hotdog-fold-thioesterase	gnl\|CDD\|161843	TIGR00369, Putative_esterase, uncharacterized domain 1. Most proteins containing this domain consist almost entirely of a single copy of this domain. A protein from C. elegans consists of two tandem copies of the domain. The domain is also found as the N-terminal region of an apparent initiation factor eIF-2B alpha subunit of Aquifex aeolicus. The function of the domain is unknown.	2.65421e-49
NZ_CP015031.1\|WP_041640202.1\|970897_971455_-\|endopeptidase	gnl\|CDD\|236773	PRK10838, spr, bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase.	4.5694e-52
NZ_CP015031.1\|WP_090653978.1\|982790_983519_-\|molybdate-ABC-transporter-permease-subunit	gnl\|CDD\|181841	PRK09421, modB, molybdate ABC transporter permease subunit.	1.07395e-143
NZ_CP015031.1\|WP_165898014.1\|986908_987223_+\|transposase	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.51184e-13
NZ_CP015031.1\|WP_090653929.1\|966999_968730_+\|arginine--tRNA-ligase	gnl\|CDD\|223097	COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].	0
NZ_CP015031.1\|WP_090653948.1\|984475_985249_+\|TOBE-domain-containing-protein	gnl\|CDD\|182640	PRK10676, PRK10676, DNA-binding transcriptional regulator ModE; Provisional.	6.03844e-85
NZ_CP015031.1\|WP_090653946.1\|983588_984350_-\|molybdate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|182641	PRK10677, modA, molybdate transporter periplasmic protein; Provisional.	1.16592e-110
NZ_CP015031.1\|WP_090653933.1\|973205_975089_-\|pyruvate-dehydrogenase-complex-dihydrolipoyllysine-residue-acetyltransferase	gnl\|CDD\|236999	PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated.	0
NZ_CP015031.1\|WP_090656434.1\|988310_989579_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|273555	TIGR01326, Includes:_O-acetylhomoserine_sulfhydrylase, OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. [Amino acid biosynthesis, Aspartate family, Amino acid biosynthesis, Serine family].	0
NZ_CP015031.1\|WP_090653931.1\|971646_973074_-\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|180579	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed.	0

>NZ_CP015031.1|WP_090653939.1|979878_980742_+|SAM-dependent-methyltransferase-TehB
MKSELICYKKLPVWNKNSLPKMFQEKHNTKAGTWGKLTVLQGKLKFYTLDEDGSIVNEHIFSANTDTPFVEPQQWHKVEALSDDLECYLEFYCTKEDYFGKKYNMTATHSDVLKTAKIITPCKVLDLGCGHGRNSLYLALKGYDVTSWDHNAASIAFLADTAAKENLQIQTAVYDINNANIQENYDFILSTVVFMFLDREAVPAIIDNMQKHTNTGGYNLIVAAMSTEEVPCPIPFDFTFGENELKNYYQGWEFVEYNENIGELHKTDENGNHYKMKFVTMLAKKVK
>NZ_CP015031.1|WP_090653937.1|978378_979476_-|porin
MKKTLVALAVAATTAAMAVPATAATVYEQDGAKVELSGSFRAFLGRVGDDNRGDLKNDGSRVYVKASQDLGNGLSAFAGYQIRFEEEAYKTAQKGSDSDFGDPTTRELYAGIKHVDIGALSFGRQNTNSDDFLDDAAYYTSASLSPLTTRSDKSVKFKSAEWNGFSFGLDYLFGDSDKLDVTNDGNYKNGYAAVLFYHNAIGEHAYNLKALYSQDRYEGFGSETGVKKTQWGLHAGYNYGPFDAALSYVNYRTKFETGYFGTVGQVSLAREAGIVDDAKGNYILLDAGYRVIPESRLYVQWERLDAKADDADYTAAIRNQYTAGIDYRLHKNVVPYIEYAHTRTKFANAETEKDNTFGVGLRVFF
>NZ_CP015031.1|WP_090653935.1|975214_977866_-|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type
MSQMINDVDPIETSDWLLAIDSIIREEGVERAQFIIEELMQHARSKSVALPTGATTEYVNTIPPSEQPPYPGNLSIERRVRSAIRWNALMMVLRAQKKDLELGGHISTYQSAASIYEVCFNHFFKAATEKNGGDLVFFQGHAAPGIYARAFVEGRISQEQMDNFRQEAKANGLSSYPHPKLMPDFWQFSTVSMGLGPVNAIYNARFLKYLNNRGLKDTTDQTVYAFLGDGEMDEIESKGALTLAAREGLDNLIFVISCNLQRLDGPVNGNGKIVQELEGLFFGAGWEVIKVMWATGWDKLFAKDTSGKLTKLMMEVVDGDYLTFKSKNGAYIREHFFGRYPETAALVADMTDDEIWALRRGGHDTEKMFAALARAKKSDKPVVILAQMVKGYKIPEAESKNTAHQTKKMSHASLKSFRNHFDLPLTDEQIDNYEYITFAPDSEESKYLHERRAALNGYVPARLPKFTTEFKVPALEDFSQLLEEQPRAISTTMAFVRVLNTLLKNKDIGKQIVPIIADEARTFGMEGLFRQVGIYNPHGQNYVPSDKELVAYYREAKDGQVLQEGINELGATASWLAAATSYSVNNLPMIPFFIYYSMFGFQRVGDMMWAAGDQLARGFMIGGTSGRTTLNGEGLQHEDGHSHIQAGVIPNCVSYDPAFAFEVAVIMQDGINRMYGEKQEDVFYYITTLNETYDQPAMPAGVEEGIRKGIYKFETVGKGEAAIQLMGSGAILRHVRQAAQILADDYGIASDVFSVPSFTEVAREGADVARWNLLHPTETQRVPYIAQVMSDKPAVAATDYMKLYAEQVRAFIPAQSYHVLGTDGFGRSDSRENLREHFEVDAHYVVVAALNELAKQGKLEKQVVADAIAKFGLDVDRINPLYA
>NZ_CP015031.1|WP_090653933.1|973205_975089_-|pyruvate-dehydrogenase-complex-dihydrolipoyllysine-residue-acetyltransferase
MSKQIQIPDIGADEVTVTEVMVKVGDTVTEEQSIINVEGDKASMEVPSPEAGVVKEILVKVGDKVTTGSPMFVLESADSAPASAPQAAAVEPAAAPTTSAVIEIHVPDIGSDEVNVTEIMVKVGDSVAEEQSIINVEGDKASMEVPAPQAGVVKEILIKEGDKVSTGSLIMKFEVAGGGAPAAETPATTVQAAPAASAVQDVNVPDIGGDEVNVTEIMVKVGDSVAEEQSLITVEGDKASMEVPAPFAGVVKEILVKSGDKVSTGSLIMRFDVAGSAPAVQAAAPAQAASAPVAPAPQAAPAQSLAPVNQDSIATSASYAHATPVVRRLAREFGVNLDKVKGTGRKGRILKEDVQEYVKNALKALESGATASTGAASGAGLGLLPWPKVDFSKFGEVEEIELTRINKISGANLHRNWVMIPHVTHFDRADITDLEAFRKEQNVLAEKQKLGVKITPVVFIMKAAAKALEAYPRFNSSISEDGQRLTLKKYVNIGVAVDTPNGLVVPVFKDVNKKGIIELSRELMEVSKKARDGKLTASDMQGGCFTISSIGGLGTTHFAPIVNAPEVAILGVSKSEMAPVWNGKEFMPRLMLPLSLSFDHRVIDGADGARFISYINGVLSDLRRLVM
>NZ_CP015031.1|WP_090653931.1|971646_973074_-|dihydrolipoyl-dehydrogenase
MSKEIKTQVVVLGAGPAGYSSAFRCADLGLETVLVERYSTLGGVCLNVGCIPSKALLHVAKVIEDAKHVEHHGIVFGEPTIDLDKVREGKNAVVGRLTGGLAGMAKMRKVTVVEGLAEFADSHTLVAKDREGNPTTIKFDNAIIAAGSRPVQLPFIPHEDPRVWDSTDALALREVPKNLLVMGGGIIGLEMGTVYSALGSQIDVVEMFDQVIPAADKDIVKIFTKRIEQKFNLLLETKVTTVEAKEDGIHVSMEAKDGKVETRVYDAVLVAIGRTPNGKLIGAEKAGIEVTDRGFINVDKQMRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAGKKHYFDPKVIPSIAYTEPEVAWVGKTEKECKAENLNYEVATFPWAASGRAIASDCADGMTKLIFDKDSHRILGGAIVGTNAGELLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAAEVFEGSVTDLPNPKAKKK
>NZ_CP015031.1|WP_041640202.1|970897_971455_-|endopeptidase
MIKKFLLVTAALVMTACSNSSRLDAAVYPSADETNDTQLTELIGSLKTNKPQYDVRSNSIHSTKNAQINNKKLMQVYSAWAGTRYRLGGTTTRGIDCSAFMQEAFSTAFGIDLPRSTSEQRSVGKKIQKSELKQGDLVFFRGNRHVGVYLGGNRFMHSSTKEGVTISSLDDGYWSRTYTQSRRVL
>NZ_CP015031.1|WP_050738259.1|969819_970824_+|DUF3298-and-DUF4163-domain-containing-protein
MSKTTLSLLISATLLLSACNDEEVRSLKEQLQTSRQQIAQLQAELQQTNATSTIKADSAQPEAAISPTEDTAIQGKIIQDEIPTLYVKPVTVFDKTEKFNFNVSKKPKNNEPLYEESHIHYAMHTVETGIEWLDSLLYQNLMADITIEDADKQKEFESIPNAKDRYAAFIEYFYNNALPEIKNGTTLGSDYYINLDYVGQRENILTFKVANYMYDGGAHGMYSTDYINIDSRKKAVIDLNTLVNKDKQNQLKELLWKSYLAYTNNDNSDIPFTEKQDFDISQQFYFSSEGVNFVYPPYALGSFAEGEITLSISWSDAKNIINKDYLREGFTIQE
>NZ_CP015031.1|WP_011200505.1|968873_969800_+|DUF3298-domain-containing-protein
MNKALLPVLVSSIFMLSACNEEKNIELAAQLQHYQQQVDQLKTELENANNKLTQTQNELTAQQQAFPALKTTEEKIFTRNEEISFTENRPTGSGIINYYIDTVKTSIPWLDKLLISQAIDILNQDAEPKDKLTINDSDSDQQKAVLTEKLENNYQRDLDILTANKLPGIDYIIETSYLGQRENLVSFSLFRHAYYGGERSSFYTRYLNIDSETQSIIRLSDVIPPVKQKELKELLWNSYANALGNNKPYIKKQNFYIAKDFYFTPDGMNFVYSPSSIAPFSAGEITLQLYWNEINTLINGQYIWHDIK
>NZ_CP015031.1|WP_090653929.1|966999_968730_+|arginine--tRNA-ligase
MNIQWILSDKIKRAMIAAGAEQNAEPLVRQSGKPQFGDYQANGIMGAAKKLGLNPREFAQKVLEQVDLSDIAEKTEIAGPGFINIFLNKNWVAQQADTALNAPNFGIKTAHPQTVVIDYSSPNVAKEMHVGHLRSTIIGDAVARALEFMGNHVIRANHVGDWGTQFGMLIAYLEKMENEHADAMQLSDLEAFYRAAKETYDNDEEFAVKARSYVVKLQSGDEYCRTMWKKLVDMTMQQNQRNYERLNVTLTEKDVMGESLYNPMLPAIVEDLKKQGLAVEDDGALVVYLDEFKNKDGDPMGVIVQKKDGGFLYTTTDIAAAKYRYHTLHADRALVFSDTRQSQHMQQAWLITRKAGYVPDSFSLEHHNFGMMLGKDGKPFKTRSGGTVKLADLLDEAVERATLLINEKNTALSEQEKAAVIEAVAIGSVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRIRSIFNKTDVNPTALSAAHIEIRNDKERALAIKLLQFEEAVQTVAKDGTPHILCNYLYELAGVFSSFYEHCPILNAEEPVKLSRLKLAKLTEKTLKQGLDLLGIKTVEKM
>NZ_CP015031.1|WP_011200502.1|966310_966901_-|VOC-family-protein
MQKFNQIHSLFEHLPANYGEFSDFEQKIATLAQEMKVDLSLYEIDHLSIRVNTEDKAKSWLTTLLNYGKILSNNLVNGRAIYLIELEQPLLFMGQRVFIIELPFPKNKHYPVESWEHIEFVIPFLPNESSIEWVERVQQQFLWNQSGNLTIKVDEPKVDGEQLPNPSIAVSFADKSQNHVCIKVHPFNIKNIIKVS
>NZ_CP015031.1|WP_090653941.1|981302_981707_-|endonuclease-domain-containing-protein
MYINSIFFYIDYSKLKIGVTMELKEFALKLRKNLTEEESILWYHLRKKQLAGFHFRKQAVIAPYVVDFICYKAKLIIEIDGEQHFQPSALVYDEKRTFYLKSKGFRVIRFTNYEIKRELDSVLDKIWYELTGEF
>NZ_CP015031.1|WP_090653943.1|981748_982804_-|molybdenum-ABC-transporter-ATP-binding-protein-ModC
MLEINVKKRLGQLVLNARLTIPGQGITGIFGISGSGKSSLINLVSGLIHPDEGNIRLNDRTLIDTANNICLAPNQRNIGYVFQDARLFPHYSVKGNLCYGIKRFNQQEFNRIVRLLGIEHLLARYPLTLSGGEKQRVAIGRALLSNPEMLLMDEPLSALDLPRKRELLAYLEKLSQEINIPILYVTHSLDELFRLADFVVLLDEGKVAAFDSLENLWQSPLFEPWQEQGQKSAVLSLPILSHNFSYKMTALLLGEQQLWVKLLNGDEGKTVRICIRSTDVSIMLTVPEKTSIRNILSGKIITLLPKGNQVDVKIALGKDEIWASVSTWAAEELQLQIGQSVYAQIKAVSVM
>NZ_CP015031.1|WP_090653978.1|982790_983519_-|molybdate-ABC-transporter-permease-subunit
MLSSLINYFQFSPNEINAIRLSIKVAVVAICCSLPFAIFVAWLLARKNFWGKSLVNGIIHLPLVLPPVVIGYLLLISMGRNGIIGRYLLQWFDFSFGFSWYGAALASAIVAFPLVVRSIRLALESVDFKLEQAARTLGASSWRVFFTVTLPLALPGVLAGVILGFARSLGEFGSTITFVSNIPNVTQTIPLAMYSFIETPGAESSAARLCIVAIFISLISLLLSEWLAKRTQTKLGQIDVRN
>NZ_CP015031.1|WP_090653946.1|983588_984350_-|molybdate-ABC-transporter-substrate-binding-protein
MSKIKNIFIGLTLSCAVSLFAEAKVTVFAAASMTNALEEVASDYKKVNPNEDIVFSFASSSVLARQITEGAPADIFISADQKWMDFLAEKDEIVKDSRVDLVGNKLVMIAPKTSKIEKVDLTNDKWQTALDKTYLSVGDPDHVPAGIYAKTAFTYLNQWAALENKLARAKNVRDALRLVEQGESPLGVVYATDAAISQKVKVVAIFPAESHPPVEYPAVIVKNKDNQESKAFFNYLKSDKAKTVFEKFGFSAK
>NZ_CP015031.1|WP_090653948.1|984475_985249_+|TOBE-domain-containing-protein
MDNTEILLTIKLHQRLFVDPKRIRLLKEIAHCGSINQAAKNAKVSYKSAWDHLEAMNAISPKPLLERNIGGKNGGGTQLTNYARRLLQLYDLLEKTQEKAFQILQDESIPLNNPLSATARFSLQSSARNQFFGKVTKLELKNGHCMVSIQIEGLNRPLVASITEKSAVRLGLVPGKEVMLMIKAPWIKTQLEEPVDKENQFLAEVRSVSDKGSEKEIILSIGENPEFCATIEKTVDVAVNQKRWLYIDPEQIVLASL
>NZ_CP015031.1|WP_011200519.1|985264_985693_+|hotdog-fold-thioesterase
MGIWTKDYTLSELNQIGEHCSVAHLAIRISAIEENWIEATMPVDQRTKQPFGLLNGGLSVALAETLGSIAGNLCLQEGQAAVGAEINASHLRPATSGLVTARATPVKLGKTLQVWQIDIRNEQNKVCCTSRLTLSVINKNEK
>NZ_CP015031.1|WP_090653950.1|985682_986654_+|ferrochelatase
MKSSKTGILLANLGTPDTPSPKAISRYLKEFLSDPRVVDLPRWKWLPLLNGIILPIRSRRIAKNYGAIWTEQGSPLFAITQKQKALLTEFFQQRQQNVIIEIGMTYGNPSMQYAIDNLIEQKVDKIIVLPLYPQYSSTTTAPVFDVFAQALKRHRHIVPFEFIHSYHLDENYIEALVKSIKVRLKNDEFLLFSFHGIPKRYEQEGDFYRPQCEQTAQAVVQKLGLKKEQWRLCFQSRFGSEPWLQPYTDKFLETAAQQGITKLAVICPGFSADCLETLEEIKEENKRIFLAHGGESYHYIPALNDSPEHIACLGNLLLKRMTI
>NZ_CP015031.1|WP_165898014.1|986908_987223_+|transposase
MRRTFSAEYKAEAVKLVTERGYSVSQACRELGVGETALRRWISQVQAEQQGYVLAGSKPISPEQQRIRELENRIKELEEDKAILKKATAILMSLENKNTKSLRR
>NZ_CP015031.1|WP_165898047.1|987210_988047_+|IS3-family-transposase
MTTLKSRGINRLCELFSVSESAYYAHLRTAKKPAKHTALAVEIKAIFDASRSSAGKRTIQSHLKEKGIFVGLYLIRKLMNKQGLFSKQPQKWRNPSKGNSQVFENILSREFTPDSQTTVLCGDTTYIKINGIWCYLAVVINLLNRQVVGWKLSRYHDSELVKDALNHAMLNIERTERMLFHSDQGSIYGSEIFTDSVKKHGLTQSMSRRGNCWDNAPVERWFRSFKYEWMLKGGYSDFESAVNDVREYVMYYNHIRPHSYNQGLSPILAKTTYRRLLN
>NZ_CP015031.1|WP_090656434.1|988310_989579_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MKFETQCLHAGYSPKNGEPRVQPIVQSTTYTYDSAESIGKLFDLQEAGFFYTRLANPTTNAAEEKLAALEGGVAALCTASGQAATFYALMNLVESGDHFISTTNIYGGTYNLFAHTFRKMGVEVTFVNQDDNLDELRKAIRPNTKAVFGETISNPTLRVLDIEKFAALAQAANAPLIIDNTFATPYFCRPFEYGANIVVHSTSKYLDGHAVALGGAIIDGGNFNWEQEKFRQFSQPDITYHGLVYTRTFGKAAYAVKARVQLMRDLGATPAPQNSFLLNLGMETLPLRMKQHYANAQAVAEWLERHPMVERVNYPGLASSKDYELKQKYMPNGLCGVLSFELKGDKQTAMKWLDSLQIISREVHVADIRSCALHPATSTHRQLSDEEMRAANITPGFIRLSIGIENPEDLLADLQNAFDQIK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP015031_1	1.18\|582289\|33\|NZ_CP015031\|PILER-CR,CRISPRCasFinder,CRT	582289-582321	33	NZ_CP015031.1	2032853-2032885	0	1.0

1. spacer 1.18|582289|33|NZ_CP015031|PILER-CR,CRISPRCasFinder,CRT matches to position: 2032853-2032885, mismatch: 0, identity: 1.0

ctaatttttccaactgattatcaaaattaattt	CRISPR spacer
ctaatttttccaactgattatcaaaattaattt	Protospacer
*********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP015031_1	1.2\|581226\|34\|NZ_CP015031\|PILER-CR,CRISPRCasFinder,CRT	581226-581259	34	NZ_CP030790	Vibrio campbellii strain DS40M4 plasmid unnamed1, complete sequence	7370-7403	10	0.706
NZ_CP015031_1	1.2\|581226\|34\|NZ_CP015031\|PILER-CR,CRISPRCasFinder,CRT	581226-581259	34	NZ_CP015865	Vibrio campbellii CAIM 519 = NBRC 15631 strain ATCC 25920, CAIM 519T plasmid unnamed, complete sequence	12070-12103	10	0.706
NZ_CP015031_1	1.18\|582289\|33\|NZ_CP015031\|PILER-CR,CRISPRCasFinder,CRT	582289-582321	33	NZ_CP032856	Bacillus subtilis subsp. subtilis strain PJ-7 plasmid unnamed1, complete sequence	2010-2042	10	0.697

1. spacer 1.2|581226|34|NZ_CP015031|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030790 (Vibrio campbellii strain DS40M4 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

aaatgacccccttttttgtgggcaaatgagggat	CRISPR spacer
gagttacccccttttttgtgtgcagatgaactga	Protospacer
.*.* *************** ***.****.  .

2. spacer 1.2|581226|34|NZ_CP015031|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015865 (Vibrio campbellii CAIM 519 = NBRC 15631 strain ATCC 25920, CAIM 519T plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

aaatgacccccttttttgtgggcaaatgagggat	CRISPR spacer
gagttacccccttttttgtgtgcagatgaactga	Protospacer
.*.* *************** ***.****.  .

3. spacer 1.18|582289|33|NZ_CP015031|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032856 (Bacillus subtilis subsp. subtilis strain PJ-7 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.697

ctaatttttccaactgattatcaaaattaattt	CRISPR spacer
acaattcttccaactgattataaaaagttcaca	Protospacer
 .****.************** **** *   .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1403811 : 1415790

Streptococcus_phage(10.0%)

protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_090656240.1\|1403811_1404933_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.9e-66	40.9
WP_011201023.1\|1405134_1405923_+	threonine/serine exporter family protein	NA	NA	NA	NA
WP_011201022.1\|1405923_1406388_+	hypothetical protein	NA	NA	NA	NA
WP_090656243.1\|1406421_1406907_+	type 3 dihydrofolate reductase	A0A076GDN3	Bacillus_phage	2.7e-33	41.6
WP_011201020.1\|1406953_1407628_-	7-carboxy-7-deazaguanine synthase QueE	A0A218M2Y8	Acidovorax_phage	4.7e-12	35.2
WP_090656245.1\|1407588_1408017_-	6-carboxytetrahydropterin synthase QueD	A0A1U9WRB3	Streptococcus_virus	5.1e-20	44.6
WP_090656248.1\|1408030_1408699_-	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	2.5e-53	48.8
WP_011201017.1\|1408903_1409737_+	membrane protein	A0A1I9SA48	Rhodococcus_phage	1.1e-29	37.2
WP_090656252.1\|1410793_1411645_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.3e-30	36.4
WP_041639991.1\|1411773_1412217_+	peptidoglycan-binding protein LysM	J9QDY6	Clostridium_phage	9.7e-06	44.4
WP_090656255.1\|1412450_1413746_+	trigger factor	NA	NA	NA	NA
WP_011201010.1\|1413955_1414537_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	1.1e-60	62.9
WP_090656258.1\|1414551_1415790_+\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.8e-121	55.3

DBSCAN-SWA_2

1459618 : 1489704

Shigella_phage(30.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_157847505.1\|1459618_1460455_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	9.0e-45	40.0
WP_165898014.1\|1460442_1460757_-\|transposase	transposase	A9YX41	Burkholderia_phage	4.9e-12	42.4
WP_090656769.1\|1460924_1462082_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_090656783.1\|1462347_1463508_-	Na+/H+ antiporter NhaA	A0A2H4J5W3	uncultured_Caudovirales_phage	2.2e-86	49.9
WP_090656770.1\|1463774_1464683_-	recombination-associated protein RdgC	S4TWL4	Salmonella_phage	3.8e-73	50.3
WP_090656777.1\|1464803_1465619_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA
WP_090656778.1\|1465618_1466764_+	3-phenylpropionate MFS transporter	NA	NA	NA	NA
WP_090656779.1\|1466916_1468131_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_090656780.1\|1468368_1469685_+	isochorismate synthase	NA	NA	NA	NA
WP_011200959.1\|1469675_1471382_+	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA
WP_090656781.1\|1471433_1472189_+	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA
WP_090656782.1\|1472274_1473132_+	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA
WP_165898014.1\|1473428_1473743_+\|transposase	transposase	A9YX41	Burkholderia_phage	4.9e-12	42.4
WP_165898047.1\|1473730_1474567_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	2.6e-44	39.6
WP_011201030.1\|1474750_1475275_+	23S rRNA accumulation protein YceD	NA	NA	NA	NA
WP_005544470.1\|1475292_1475463_+	50S ribosomal protein L32	NA	NA	NA	NA
WP_090656743.1\|1475490_1476507_+	phosphate acyltransferase PlsX	NA	NA	NA	NA
WP_090656746.1\|1476547_1477498_+	ketoacyl-ACP synthase III	NA	NA	NA	NA
WP_011201034.1\|1477562_1478501_+	ACP S-malonyltransferase	NA	NA	NA	NA
WP_090656747.1\|1478591_1479320_+	3-oxoacyl-ACP reductase FabG	Q06VL0	Trichoplusia_ni_ascovirus	5.3e-17	32.1
WP_005759872.1\|1479580_1479811_+	acyl carrier protein	B2ZXV3	Ralstonia_phage	3.0e-11	50.0
WP_011201037.1\|1480043_1481393_+	anaerobic C4-dicarboxylate transporter	NA	NA	NA	NA
WP_090656748.1\|1481462_1482161_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA
WP_090656749.1\|1482243_1483485_-	uracil permease	NA	NA	NA	NA
WP_011201040.1\|1483528_1484155_-	uracil phosphoribosyltransferase	NA	NA	NA	NA
WP_090656750.1\|1484300_1484942_-	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA	NA	NA	NA
WP_090656751.1\|1485050_1485824_-	imidazole glycerol phosphate synthase subunit HisF	NA	NA	NA	NA
WP_090656752.1\|1485805_1486555_-	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase	NA	NA	NA	NA
WP_090656753.1\|1486569_1487271_-	MOSC domain-containing protein	NA	NA	NA	NA
WP_090656756.1\|1487270_1487864_-	imidazole glycerol phosphate synthase subunit HisH	NA	NA	NA	NA
WP_090656765.1\|1487876_1488413_-	hypothetical protein	NA	NA	NA	NA
WP_165898047.1\|1488565_1489402_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	2.6e-44	39.6
WP_165898014.1\|1489389_1489704_-\|transposase	transposase	A9YX41	Burkholderia_phage	4.9e-12	42.4

DBSCAN-SWA_3

2012475 : 2020613

Streptococcus_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011199347.1\|2012475_2014578_+	elongation factor G	E4ZFJ7	Streptococcus_phage	1.2e-61	28.3
WP_011199348.1\|2014648_2015833_+	elongation factor Tu	A0A2K9L516	Tupanvirus	3.7e-12	25.8
WP_011199349.1\|2016067_2016547_+\|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	NA	NA	NA	NA
WP_011199351.1\|2016562_2017258_-	hypothetical protein	NA	NA	NA	NA
WP_011199352.1\|2017281_2018541_-	multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR	A0A0C5K935	Enterococcus_phage	1.0e-92	46.9
WP_011199355.1\|2018979_2019624_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	4.2e-42	44.9
WP_011199356.1\|2019676_2019916_-	sulfurtransferase TusA	A0A140XB86	Dickeya_phage	7.3e-08	72.2
WP_011199357.1\|2020004_2020613_+	YigZ family protein	A0A1X9I5T8	Streptococcus_phage	1.7e-21	41.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP015031

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection