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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP026662 Bacillus subtilis strain H1 chromosome, complete genome 2 crisprs DinG,cas3,csa3,DEDDh 0 1 14 0

Results visualization

1. NZ_CP026662
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP026662_1 1377166-1377273 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP026662_2 3437906-3438011 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP026662_1 1.1|1377190|60|NZ_CP026662|CRISPRCasFinder 1377190-1377249 60 NZ_CP024037 Bacillus aryabhattai strain K13 plasmid unnamed2 10417-10476 7 0.883
NZ_CP026662_1 1.1|1377190|60|NZ_CP026662|CRISPRCasFinder 1377190-1377249 60 NZ_CP026740 Bacillus megaterium strain YC4-R4 plasmid unnamed4 70764-70823 7 0.883
NZ_CP026662_1 1.1|1377190|60|NZ_CP026662|CRISPRCasFinder 1377190-1377249 60 NC_017139 Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence 1318-1377 7 0.883
NZ_CP026662_1 1.1|1377190|60|NZ_CP026662|CRISPRCasFinder 1377190-1377249 60 NZ_CP010587 Bacillus megaterium Q3 plasmid p1, complete sequence 838-897 7 0.883
NZ_CP026662_1 1.1|1377190|60|NZ_CP026662|CRISPRCasFinder 1377190-1377249 60 NZ_CP023319 Bacillus megaterium strain A plasmid p2, complete sequence 75825-75884 7 0.883
NZ_CP026662_1 1.1|1377190|60|NZ_CP026662|CRISPRCasFinder 1377190-1377249 60 NC_020451 Vibrio coralliilyticus strain ATCC BAA-450 plasmid, complete sequence 1960-2019 9 0.85
NZ_CP026662_1 1.1|1377190|60|NZ_CP026662|CRISPRCasFinder 1377190-1377249 60 NZ_CP015440 Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_2, complete sequence 64773-64832 12 0.8
NZ_CP026662_1 1.1|1377190|60|NZ_CP026662|CRISPRCasFinder 1377190-1377249 60 NZ_CP033045 Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence 483791-483850 13 0.783
NZ_CP026662_1 1.1|1377190|60|NZ_CP026662|CRISPRCasFinder 1377190-1377249 60 NZ_LR134399 Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence 57361-57420 14 0.767

1. spacer 1.1|1377190|60|NZ_CP026662|CRISPRCasFinder matches to NZ_CP024037 (Bacillus aryabhattai strain K13 plasmid unnamed2) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

2. spacer 1.1|1377190|60|NZ_CP026662|CRISPRCasFinder matches to NZ_CP026740 (Bacillus megaterium strain YC4-R4 plasmid unnamed4) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

3. spacer 1.1|1377190|60|NZ_CP026662|CRISPRCasFinder matches to NC_017139 (Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

4. spacer 1.1|1377190|60|NZ_CP026662|CRISPRCasFinder matches to NZ_CP010587 (Bacillus megaterium Q3 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

5. spacer 1.1|1377190|60|NZ_CP026662|CRISPRCasFinder matches to NZ_CP023319 (Bacillus megaterium strain A plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

6. spacer 1.1|1377190|60|NZ_CP026662|CRISPRCasFinder matches to NC_020451 (Vibrio coralliilyticus strain ATCC BAA-450 plasmid, complete sequence) position: , mismatch: 9, identity: 0.85

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcattttagttatggcccggg	Protospacer
****************************************** ***   * ***  **. 

7. spacer 1.1|1377190|60|NZ_CP026662|CRISPRCasFinder matches to NZ_CP015440 (Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_2, complete sequence) position: , mismatch: 12, identity: 0.8

cagcttggaaggctgaggttttaccactaaactacacccgca-------atttttatttg	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcataataatatataccattg	Protospacer
******************************************       ** * .  ***

8. spacer 1.1|1377190|60|NZ_CP026662|CRISPRCasFinder matches to NZ_CP033045 (Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence) position: , mismatch: 13, identity: 0.783

cagcttggaaggctgaggttttaccactaaactacacccgc--------aatttttattt	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatggttaaaagttttgcca	Protospacer
*****************************************        ** ****... 

9. spacer 1.1|1377190|60|NZ_CP026662|CRISPRCasFinder matches to NZ_LR134399 (Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence) position: , mismatch: 14, identity: 0.767

cagcttggaaggctgaggttttaccactaaactacacccgc---------aatttttatt	CRISPR spacer
cagcttggaaggctgtagttttaccactaaactacacccgcatagtaagtagttcttagt	Protospacer
*************** .************************         *.**.*** *

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 11555 : 33913 24 Bacillus_phage(85.71%) holin NA
DBSCAN-SWA_2 45200 : 81179 47 Bacillus_phage(96.97%) NA NA
DBSCAN-SWA_3 84501 : 143382 100 Bacillus_phage(95.0%) tRNA,integrase attL 84467:84488|attR 105963:105984
DBSCAN-SWA_4 801124 : 830450 36 Bacillus_phage(36.36%) terminase,tail,holin,plate,portal NA
DBSCAN-SWA_5 833568 : 841444 14 uncultured_Caudovirales_phage(60.0%) NA NA
DBSCAN-SWA_6 994441 : 1103295 115 Bacillus_phage(58.82%) tRNA,tail,terminase,head,holin,coat,plate,capsid,portal,protease NA
DBSCAN-SWA_7 1561406 : 1583554 21 Bacillus_phage(61.54%) tail,head,holin,plate,protease NA
DBSCAN-SWA_8 1589678 : 1601218 18 Bacillus_phage(36.36%) integrase attL 1584633:1584646|attR 1605796:1605809
DBSCAN-SWA_9 2072006 : 2190835 113 Bacillus_phage(22.22%) tRNA,lysis,holin,coat,bacteriocin,protease NA
DBSCAN-SWA_10 2603201 : 2669510 81 Bacillus_phage(42.22%) tRNA,terminase,tail,integrase,holin,plate,capsid,portal attL 2615934:2615993|attR 2680620:2680741
DBSCAN-SWA_11 3121100 : 3166883 70 uncultured_Caudovirales_phage(35.9%) tRNA,terminase,tail,head,integrase,portal,protease attL 3113418:3113432|attR 3161315:3161329
DBSCAN-SWA_12 3212499 : 3220865 8 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_13 3707772 : 3751974 47 Planktothrix_phage(25.0%) tRNA,coat NA
DBSCAN-SWA_14 3779331 : 3889674 116 Bacillus_phage(24.44%) tRNA,terminase,tail,holin,coat,plate,portal,protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage