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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP041701 Mycoplasma capricolum subsp. capripneumoniae strain 8991 chromosome, complete genome 7 crisprs NA 1 1 1 0

Results visualization

1. NZ_CP041701
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041701_1 249337-249445 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041701_2 358361-358547 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041701_3 747495-747635 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041701_4 888481-888579 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041701_5 896557-896731 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041701_6 896869-897117 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041701_7 980246-980347 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP041701_2 2.1|358413|23|NZ_CP041701|PILER-CR 358413-358435 23 NZ_CP041701.1 436723-436745 0 1.0

1. spacer 2.1|358413|23|NZ_CP041701|PILER-CR matches to position: 436723-436745, mismatch: 0, identity: 1.0

gtttaaaggtgcaacttcatttg	CRISPR spacer
gtttaaaggtgcaacttcatttg	Protospacer
***********************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP041701_2 2.2|358488|26|NZ_CP041701|PILER-CR 358488-358513 26 NZ_CP046723 Pantoea agglomerans strain ASB05 plasmid pASB05p1, complete sequence 22502-22527 4 0.846
NZ_CP041701_2 2.2|358488|26|NZ_CP041701|PILER-CR 358488-358513 26 NZ_CP034149 Pantoea agglomerans strain L15 plasmid pPagL15_1, complete sequence 22123-22148 4 0.846
NZ_CP041701_2 2.2|358488|26|NZ_CP041701|PILER-CR 358488-358513 26 NZ_CP017832 Butyrivibrio hungatei strain MB2003 plasmid pNP144, complete sequence 125823-125848 5 0.808
NZ_CP041701_2 2.2|358488|26|NZ_CP041701|PILER-CR 358488-358513 26 NC_022879 Enterococcus mundtii QU 25 plasmid pQY182, complete sequence 12569-12594 5 0.808
NZ_CP041701_2 2.2|358488|26|NZ_CP041701|PILER-CR 358488-358513 26 KC821622 Cellulophaga phage phi46:3, complete genome 12094-12119 6 0.769

1. spacer 2.2|358488|26|NZ_CP041701|PILER-CR matches to NZ_CP046723 (Pantoea agglomerans strain ASB05 plasmid pASB05p1, complete sequence) position: , mismatch: 4, identity: 0.846

aatgtttttaggagcaaaaaacttca	CRISPR spacer
agtgtttttatgtgcaaaaaacttcc	Protospacer
*.******** * ************ 

2. spacer 2.2|358488|26|NZ_CP041701|PILER-CR matches to NZ_CP034149 (Pantoea agglomerans strain L15 plasmid pPagL15_1, complete sequence) position: , mismatch: 4, identity: 0.846

aatgtttttaggagcaaaaaacttca	CRISPR spacer
agtgtttttatgtgcaaaaaacttcc	Protospacer
*.******** * ************ 

3. spacer 2.2|358488|26|NZ_CP041701|PILER-CR matches to NZ_CP017832 (Butyrivibrio hungatei strain MB2003 plasmid pNP144, complete sequence) position: , mismatch: 5, identity: 0.808

aatgtttttaggagcaaaaaacttca	CRISPR spacer
cttgtttttaggaacaaaaaactaaa	Protospacer
  ***********.*********  *

4. spacer 2.2|358488|26|NZ_CP041701|PILER-CR matches to NC_022879 (Enterococcus mundtii QU 25 plasmid pQY182, complete sequence) position: , mismatch: 5, identity: 0.808

aatgtttttaggagcaaaaaacttca	CRISPR spacer
atattttttaggagcagaaaacttcg	Protospacer
*   ************.********.

5. spacer 2.2|358488|26|NZ_CP041701|PILER-CR matches to KC821622 (Cellulophaga phage phi46:3, complete genome) position: , mismatch: 6, identity: 0.769

aatgtttttaggagcaaaaaacttca	CRISPR spacer
ggagtttttaggagcagaaaacttat	Protospacer
.. *************.*******  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 127990 : 141997 13 Lactococcus_phage(25.0%) tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage