CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP041708	Mycoplasma capricolum subsp. capripneumoniae strain 438LP chromosome, complete genome	5 crisprs	NA	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP041708_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041708_1

248802-248910

Orphan

Consensus_repeat	Method
AAGGAATTTCTGTGTATTTACACACTTTTTCCTTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041708_1

>merge|NZ_CP041708|1|248802-248910|CRISPRCasFinder
AAGGAATTTCTGTGTATTTACACACTTTTTCCTTATTATTATACTAAAAAGTAAGATTAGCTAGTTTTAAGTATAAGGAATTTCTGTGTATTTACACACTTTTTCCTTA

>NZ_CP041708|1|1|248802-248910|CRISPRCasFinder
AAGGAATTTCTGTGTATTTACACACTTTTTCCTTA	TTATTATACTAAAAAGTAAGATTAGCTAGTTTTAAGTAT
AAGGAATTTCTGTGTATTTACACACTTTTTCCTTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041708.1\|WP_029333232.1\|220233_220425_+\|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl\|CDD\|308794
NZ_CP041708.1\|WP_019269188.1\|223872_225513_-\|LppA-family-lipoprotein	unknown	unknown	gnl\|CDD\|274602
NZ_CP041708.1\|WP_019269195.1\|247496_248792_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224292
NZ_CP041708.1\|WP_019269190.1\|232129_232666_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041708.1\|WP_036428537.1\|252696_253614_-\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NZ_CP041708.1\|WP_045076090.1\|246025_247381_-\|peptidase-M17	unknown	unknown	gnl\|CDD\|376407
NZ_CP041708.1\|WP_019269187.1\|222957_223839_+\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|319818
NZ_CP041708.1\|WP_019269205.1\|256494_256875_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041708.1\|WP_165890745.1\|254707_255205_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041708.1\|WP_019269201.1\|254407_254572_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041708.1\|WP_036428509.1\|220372_221071_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041708.1\|WP_019269200.1\|253827_254193_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041708.1\|WP_165894299.1\|257730_257985_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041708.1\|WP_165890743.1\|226250_228050_-\|alpha-glycosidase	unknown	unknown	gnl\|CDD\|200477
NZ_CP041708.1\|WP_165894298.1\|256837_257656_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041708.1\|WP_029333244.1\|245325_246009_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|341186
NZ_CP041708.1\|WP_036428773.1\|243532_245326_-\|oligoendopeptidase-F	unknown	unknown	gnl\|CDD\|272947
NZ_CP041708.1\|WP_165890744.1\|249034_249655_+\|chromate-transporter	unknown	unknown	gnl\|CDD\|224970
NZ_CP041708.1\|WP_036428542.1\|255502_255814_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041708.1\|WP_019269197.1\|249654_250332_+\|chromate-transporter	unknown	unknown	gnl\|CDD\|376780

Protein	Function_ID	Function_description	E-value
NZ_CP041708.1\|WP_029333232.1\|220233_220425_+\|BspA-family-leucine-rich-repeat-surface-protein	gnl\|CDD\|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	1.4497e-14
NZ_CP041708.1\|WP_019269187.1\|222957_223839_+\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|319818	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily. Escherichia coli Cof is involved in the hydrolysis of HMP-PP (4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate, an intermediate in thiamin biosynthesis), Cof also has phosphatase activity against the coenzymes pyridoxal phosphate (PLP) and FMN. Thermotoga maritima TM0651 acts as a phosphatase with a phosphorylated carbohydrate molecule as a possible substrate. Escherichia coli YbhA is also a member of this family and catalyzes the dephosphorylation of PLP, YbhA can also hydrolyze erythrose-4-phosphate and fructose-1,6-bis-phosphate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	7.28816e-57
NZ_CP041708.1\|WP_019269188.1\|223872_225513_-\|LppA-family-lipoprotein	gnl\|CDD\|274602	TIGR03490, Uncharacterized_lipoprotein_lpp, mycoides cluster lipoprotein, LppA/P72 family. Members of this protein family occur in Mycoplasma mycoides, Mycoplasma hyopneumoniae, and related Mycoplasmas in small paralogous families that may also include truncated forms and/or pseudogenes. Members are predicted lipoproteins with a conserved signal peptidase II processing and lipid attachment site. Note that the name for certain characterized members, p72, reflects an anomalous apparent molecular weight, given a theoretical MW of about 61 kDa.	6.55319e-125
NZ_CP041708.1\|WP_019269195.1\|247496_248792_-\|ATP-binding-protein	gnl\|CDD\|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	2.30328e-50
NZ_CP041708.1\|WP_165890743.1\|226250_228050_-\|alpha-glycosidase	gnl\|CDD\|200477	cd11338, AmyAc_CMD, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins. Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
NZ_CP041708.1\|WP_045076090.1\|246025_247381_-\|peptidase-M17	gnl\|CDD\|376407	pfam00883, Peptidase_M17, Cytosol aminopeptidase family, catalytic domain. The two associated zinc ions and the active site are entirely enclosed within the C-terminal catalytic domain in leucine aminopeptidase.	5.63692e-140
NZ_CP041708.1\|WP_029333244.1\|245325_246009_-\|hypothetical-protein	gnl\|CDD\|341186	cd17495, RMtype1_S_Cep9333ORF4827P-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Crinalium epipsammum S subunit (S.Cep9333ORF4827P) TRD2-CR2 and Corynebacterium genitalium sp. nov. S subunit (S.CgeORF10704P) TRD2-CR2. The recognition sequences for Crinalium epipsammum S subunit (S.Cep9333ORF4827P) and Corynebacterium genitalium sp. nov. S subunit (S.CgeORF10704P) are undetermined. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. This subfamily of TRD-CR's shows similarity to TRD1-CR1 of Aminobacterium colombiense DSM 12261 S subunit (S.Aco12261I), which recognizes 5'... GCANNNNNNTGT ... 3'. This subfamily may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases.	0.00526515
NZ_CP041708.1\|WP_036428773.1\|243532_245326_-\|oligoendopeptidase-F	gnl\|CDD\|272947	TIGR00181, Oligoendopeptidase_F_homolog, oligoendopeptidase F. This family represents the oligoendopeptidase F clade of the family of larger M3 or thimet (for thiol-dependent metallopeptidase) oligopeptidase family. Lactococcus lactis PepF hydrolyzed peptides of 7 and 17 amino acids with fairly broad specificity. The homolog of lactococcal PepF in group B Streptococcus was named PepB (, with the name difference reflecting a difference in species of origin rather activity; substrate profiles were quite similar. Differences in substrate specificity should be expected in other species. The gene is duplicated in Lactococcus lactis on the plasmid that bears it. A shortened second copy is found in Bacillus subtilis. [Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NZ_CP041708.1\|WP_036428537.1\|252696_253614_-\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	4.49345e-26
NZ_CP041708.1\|WP_165890744.1\|249034_249655_+\|chromate-transporter	gnl\|CDD\|224970	COG2059, ChrA, Chromate transport protein ChrA [Inorganic ion transport and metabolism].	1.31669e-26
NZ_CP041708.1\|WP_019269197.1\|249654_250332_+\|chromate-transporter	gnl\|CDD\|376780	pfam02417, Chromate_transp, Chromate transporter. Members of this family probably act as chromate transporters. Members of this family are found in both bacteria and archaebacteria. The proteins are composed of one or two copies of this region. The alignment contains two conserved motifs, FGG and PGP.	1.61123e-12

>NZ_CP041708.1|WP_019269195.1|247496_248792_-|ATP-binding-protein
MIINRDFYLNQLINKMNNSKVKIVTGIRRCGKSFLLFNLFYKYLISINIPSDQIIKISLDGYDNRMYRTPTTLNNFIQSKITNKNKKYYLLIDEIQYCEPEINEFAPNTEKITFVDVLLSFYNNPNLDVYVTGSNSKMLSTDILTQFRGRGDEISLNTLSFFEIYDLFENKDKALKHYMLYGGLPAIYNLKTDEEKQKYLKNTFDETYIKDILERNSLTSETGEILDALLNFISSAIGSLTNPLRLANRFISEKNIKINSTTISKYLNIFKDSFLIRSSIRYDVKGNKYFNTPLKYYFTDIGLRNAKLSFRQYEENHIMENIIYNELYRRDFNIDIGIVEIQQNQNNKRTRTTLEIDFIASKNHQKYYIQSAYSIWDSQKKEQETRSLNNVNDSFKKIVVVYEDIIPWHDNNGIYYVGLKEFLLDESILNN
>NZ_CP041708.1|WP_045076090.1|246025_247381_-|peptidase-M17
MLKFNDKKKELTLICLTDVKDKKYVVDTDLSTSFISEEKTFYMVIKKDQKDLFRKLKIAFKNFVLENKYNINIDVDSFFNLLNECDCKEKLINTIYETIAFETFDKVSYKKDNKPNQVVYNLLTSFDVKDLEQKEAIKMEFVNFARMLQDTPPNIATSEYLAEKVVEKAKKIDGLKVTVLGKKEATKLGMNLFLAVNAGSIYEPQAVVLEYVGDENEPKKALVGKGITFDSGGYNLKPSSAMEGMKFDMSGAAIMLSTVMALAKMKAKVNVVGIGMFTDNRIGSTATLPQSVVKSMNGLTVEIDDTDAEGRLVLADGITYAIREKQATEIWEASTLTGSVVSALGSYATGVFTHCDKRWEIVKSVSKFSGERMWRLPLYEEHLEEVRNDAINADITNATKNYEAESSKAASFLNEFREDKPYVHFDIAGTDSIKGRGQGVLVKTLFEIFNK
>NZ_CP041708.1|WP_029333244.1|245325_246009_-|hypothetical-protein
MKLKNWTFYKAKQLVKLNESNQVLEDIAVLILRPDINKEKTLLAIGLDKKVVNSLIIDLQNKAFEENELFEIFKENIGFVSTEEISEIDAKGLNLSTPIHQDNIKSIIKIYNLFLNVESIEFDTKDYQDLENIQNQEDVFTNVDFENIPLPALLQTLNVGMENYKQRVEEIFELDGKESINKKLELVNIQSNLIAFFDQALRKMDDIITKLSEQNAELIKKLESQEK
>NZ_CP041708.1|WP_036428773.1|243532_245326_-|oligoendopeptidase-F
MKRPEALKEYKWDFDYLYKNQDEWKNDLNYLIEISKEFKNFKNKLHEKETFLKCLDLEEKVDFITNKLSTYTRMGDTNQADEVYRTLEALLMNVLQDIEIETSFISPETKKIGFETISKWLKETKVYQRYLYGYEKFFEQVKHILSEHDEELLSKISKGYTAISGMYDTLAYADRQEETINYKGIDQTLTNSLFLEILQDSDPIKDQDLRLKASEIFSKNFSTKKHSFALIYEGILQSDYQDTKLRNYDSSLQASLSSDSIPVDIYLKLLEVGKKYIKPLEDFLLLTKKHFKLNKFYPSDKQLKLVKEYNQTFTVEQAKEHIKKALSILGEEYLKNLEIAWGPNKIDYYEDTNKRDGAYSTGGHGVDPIILMNWDDKLNSVNTLAHECGHSVHTLFSEQNQVYPLSQYPIILAEVASTINEHLLFDYMYKNAKLKEEKIYLLQERIFNLVSTFYRQIQFADFEYRASQLVSKQTPLTSEVLNNLFKEVEDDYGYKVFDKLDENTKSGYGWPRISHFFHSPFYVYKYAIDVTASYKLYDDIKNGNIQTTLDFLKAGGHKEPLKIMLDAGIDFNKEQTYLPLINGISDYIKELQSLLEE
>NZ_CP041708.1|WP_019269190.1|232129_232666_+|hypothetical-protein
METKLLFGHKTHIKKPNAYFLLGICIVFIIAISASLLVSYSYLVREIKILVDSNTSLNQTELDKMISTKRSNFFKYYLFRYILNAITVIIFALYCVFAINRITVGYVFVGLWLIVWFGSAFGELILYKTLSTISIINIVLFSLVLISFYFIVKDISENKRQLRYQKTKKDNIVFRKWG
>NZ_CP041708.1|WP_165890743.1|226250_228050_-|alpha-glycosidase
MKLIDRVAIHHQQRSNMAYCYDKDYIHIILRTKKDDLKKVVIHHGDPFLRGHYLLGDDYIDLKPKEMTKTGSTKLYDYWFVELKPDFKRLTYFFELFGIDDDHCYFGEKGFYETSDFKMINTGGWGFNYAWMNPNDIYQAPNWINDTIWYQIFPERFANGNPDISPKNVLAWNSVDPSYDSFFGGDLQGIIDHLDHLVELGINGLYLCPIFKAKSNHKYDTIDYLQIDPNFGDKKTFKRLVEECHKRNIKVMLDAVFNHAGYWNKFWQDVLKNQENSKYKDWFYINKFPLQEQIIDKNNQHKKINNYYTFAFHEVIPKINTTNKDAKKYLLKVTNYWIKEFDIDAWRLDAANEVDHEFWRDFRKTVNKNKSIYILGEIWGYAHPWLKGDQFDGVTNYMITSPICELVTKTIKPSRFNDKTTEVLNNYPRNVFKGMLNCLTSHDTTRLLTLCNNDIKKFKLAYSLVFMLAGAPSIYYGDEIGLDGAHDPLNRKCMNWNKDQWNYEIFNYLKKLIQIRKKNPVLGSYGILKYTLINDDKNYLEFIKYEDNNTYLILVNNSDHQLEIKKDELVNNIDLISDQIQTNKTISLDPISMKVFKIK
>NZ_CP041708.1|WP_019269188.1|223872_225513_-|LppA-family-lipoprotein
MRKFNKLFLAFLPISSLSIFSVVSCTTNNKNNKPNEIPQLPNSKKPDNKPESANKTENKKPTEGSNSEKQPEIKPIPGDPETVPDNSNNPKQPENNDNSGSNNNYNNPNNEEPQGDEPQSDEQNDSKNRVDFLDIEKINKKIDFKYITTYNNKTANAAWVQIKSRGQNIFKEIIFNKNKEILETYQIEFDSESLPEIIDEKGIISKVKIKFTKFNESKIFIFSFIGFKEEAKSEKDNKSKKNEYIKVKDKINEKIKGLYPSLVAYMLLYVEDQNKYNKDIKQSGNVINFQDLENKNDSLFSSDFPGFSIGTKELLFEYKEEYRQIYKDEIISAAYDDLNGILQLEVQIRNTDDHTNDKGDPLITKKFKLEGFRKVDIKNENNNVIFVDLLKNDFKEIVNKGSLTEIVKQFITYGAYNKKIGLGNSNQTGIKNELFKKLIVNINDKSNIYRTTQTLSLDRNNGKKYKSILGLKNNMSLYPFHTRANKDSIKNIYLTITNENGIKEAKIEFELYLSVYASTFTDLTDNTYASEKNIKLTITQIAQINQ
>NZ_CP041708.1|WP_019269187.1|222957_223839_+|Cof-type-HAD-IIB-family-hydrolase
MKLKDLNLKRLILIDLDGTTLTNQNDQIHEITKKAILDAQSNGHIVCIVTGRPFRAVEHIYKELNLTTLLANFDGAHIHDPNSKLMKRVVLPINYEIIMQIINEPIIKNNVENILIEYYDKSLLWKADKELEDFFHLNKVKSSKDFVFIKASPYTDWKSPSNNLVLKLKSNESKDEVIRVLTKYQDAVKIQSDILYGIVTSKTKPVITLTNKNADKGFASIFLAQYYNKDIRDVIAFGDQLNDYEMLKTVGCSIAMKNGVNNLKFIAKGITHYTNDEGGLGHYLNLLLEGKEV
>NZ_CP041708.1|WP_036428509.1|220372_221071_+|hypothetical-protein
MLLILLLFQITKIRTLINVFPELLKALENKSSSVKYLGLSNFQINNPITIKAQNTKLVEELNFSILSFNDLEKEFNQNINNTTFEKLKEGYKIKLSNRSKLYSIFFKKNSSLSDNDHEHILLFTSPMKPIVLKNYINVINTNNIIAELKNTDSSFKNIDLEVKNNTIINNQAIIKLKSNHDLYEDEIRVIFNNKSKFFKDNKYIILLGVLGSGFLISSLGWLTYSLIKRKNK
>NZ_CP041708.1|WP_029333232.1|220233_220425_+|BspA-family-leucine-rich-repeat-surface-protein
MSSMFYDAKLFNKNISKWDISHVTNISKMFWGASSFDQDLSKWNTTSVINFASFSDNQNKNFN
>NZ_CP041708.1|WP_165890744.1|249034_249655_+|chromate-transporter
MNKKEYIKPPTFWNIFLFILLITFVGFGGGNAIMPVIKRYAVDKYKWLDEDEFHQNVVLTNMLPGPAAIQTTAYIAFKSLSKFKAYLVVSLASMPHTFFAVGLVFAFNKIPTQYLIVVQLGVLIAITGALLGFGYNYFKKGKKVMKLSLWLVLFLTTLLFSLFVPTPYNVPILVMILVIAIYSTIFIIKSKKTKKVDSNKIKKGIE
>NZ_CP041708.1|WP_019269197.1|249654_250332_+|chromate-transporter
MLSFIAFLVTLVLLIFVSLSVFGGGQVFMPIFVWLWKSLNSWFKIEISEEFINTVFAVSNSTPGILSPKFAAITGYMIAQGQWWGFVAMIFTYLAFVLPAIFMMMIAIKYSQKFHQSTFFKKLIDIMNPVVAGIIIALAIEIFINCMFPYFVFNESVSEYWKFIDPNKPNQSMKFFTGWRLIALYCYVPIGIIISLFLYLKKVPIFGLIFANIIFCLVLFEPWLG
>NZ_CP041708.1|WP_036428537.1|252696_253614_-|ParA-family-protein
MKEQINLISFGGLKGGVGKTTLNLNIAGALALQGKRILVMDFDPQGSITQTLRQSVQQTKDIQGTERWLLDDMNKDKLQKTILKSFIENIDFVPSTPILERQNRQLVLEPNREKRLITNMIKIGENQNLLTSYDHIIIDTNPAFDTIAENVYMACAFRGGVIQVINDDPYSLTGAIKNLKVWEKRYMNDEFVHIPNTLKGIVINKTKNNSLSKQIVLTLNSNDFPYRDLVLSTTIIENNSIKKSIFQHKNKKGKISINFACQDKRLNSWTKPKWIKENTKLDNLVKNGNPINNLILELKDKKILI
>NZ_CP041708.1|WP_019269200.1|253827_254193_-|hypothetical-protein
MINNKSDFDTTISNSLEDDFGMGLKEKIAKRNSAYSKRTDLAKNFINTSSISKSVQIEQNIFSNKLKPVKVKRSSLYMNERVEQLYQKLVYTYIEKRGKAPSITDIFVEGLYSLQNKLDNE
>NZ_CP041708.1|WP_019269201.1|254407_254572_-|hypothetical-protein
MWNYKSIDWDDSSNVKKITQQAYDLVQKEQLEKEKQLKEKQAQQQIKKTRRSWY
>NZ_CP041708.1|WP_165890745.1|254707_255205_-|hypothetical-protein
MNNIEIGIVCKERYKEFSFPIAKNKNGSLIERHGNNRPYIIFFSDEKVFYLSAKTILDSNRKTTTGDKTNVIFKKDLYGNDREIAVNCSVINVMDRELFDSLYIKDSSFNNFQTDIEHYNKIMKKLFDVFNEIKYFEVDHIDEKTNQPIWKSDNEAIKKRVWNGN
>NZ_CP041708.1|WP_036428542.1|255502_255814_-|hypothetical-protein
MSSLRDKIINSIINELESKYFIKYKKHYLIDIDELNMLVKKIAKKNDQVNAGQLLLKPVNRVSQNQALIKVENFNKYFEPVNDLNKPIKIDRANQATKQKNCY
>NZ_CP041708.1|WP_019269205.1|256494_256875_+|hypothetical-protein
MSLRFSLSDQLLDLSLDDELLVPLAPLEPPLFDDEPLELLSIHDELLELWLFEAGFLNLSICKTNVSVGWMKRLFLYSSFKFTLTFKVLVKELKLVDIHIFSKSSLLLLNSLVESKLETKLSLVFF
>NZ_CP041708.1|WP_165894298.1|256837_257656_-|hypothetical-protein
MEAVVIGKGALRQISKNIKDYRVHKLNRNGQFIRIDDTWINILDKNTTESSYFSTEGIWLFTNNADKSITNFKIVYITKEEKPNGYFTDYVTESHKTIKPLWQTNQGRRFYNYLTTKSLKNEKIISLKYEEAMEYYKQYINDLYFKTDWENYVQINPKFKQIEKDKYTVEQFKNKYINKPNNFQNTYLDEFNNKKLVSVTKLEFNNEKTGIYVYLKLNSNEIKYHLLTDKYFIPVKFKDIKIENKSTINLNLNSNYIYSIAKKILKRVLFLI
>NZ_CP041708.1|WP_165894299.1|257730_257985_-|hypothetical-protein
MDFKWYAWDPKTYAHQRELIEEFQKDEKGKTKRDKTGKPIKNPKYDPKIDPNTGTKKELIWFDFNTHNPWIINSIYGDEKNTMK

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Crispr_ID: NZ_CP041708_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041708_2

746941-747081

Orphan

Consensus_repeat	Method
GGTTGTGGTAGATTAGTGGTAGAAATATGGTAGATTAGAATATAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041708_2

>merge|NZ_CP041708|2|746941-747081|CRISPRCasFinder
GGTTGTGGTAGATTAGTGGTAGAAATATGGTAGATTAGAATATAAAAGTGATATAAAATAACAGAGTTTTTAAGCTATTTTACCAGTTTTTTACCGGTTGTGGTAGATTAGTGGTAGAAATATGGTAGATTAGAATATAAA

>NZ_CP041708|2|2|746941-747081|CRISPRCasFinder
GGTTGTGGTAGATTAGTGGTAGAAATATGGTAGATTAGAATATAAA	AGTGATATAAAATAACAGAGTTTTTAAGCTATTTTACCAGTTTTTTACC
GGTTGTGGTAGATTAGTGGTAGAAATATGGTAGATTAGAATATAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041708.1\|WP_036428027.1\|735938_736880_+\|1-phosphofructokinase-family-hexose-kinase	unknown	unknown	gnl\|CDD\|238570
NZ_CP041708.1\|WP_050777392.1\|740917_742171_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041708.1\|WP_036428011.1\|750927_752769_+\|ribonuclease-J	unknown	unknown	gnl\|CDD\|223668
NZ_CP041708.1\|WP_019269596.1\|764389_765325_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|236353
NZ_CP041708.1\|WP_036428030.1\|732246_733092_-\|class-II-fructose-bisphosphate-aldolase-family-protein	unknown	unknown	gnl\|CDD\|238477
NZ_CP041708.1\|WP_019269583.1\|745464_746877_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225420
NZ_CP041708.1\|WP_045076196.1\|749138_750593_+\|DUF285-domain-containing-protein	unknown	unknown	gnl\|CDD\|308794
NZ_CP041708.1\|WP_019269595.1\|763280_764297_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|273675
NZ_CP041708.1\|WP_019269585.1\|748125_748299_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041708.1\|WP_029333342.1\|726253_727312_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|365803
NZ_CP041708.1\|WP_052007432.1\|739460_740408_-\|ATP-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|223581
NZ_CP041708.1\|WP_036428000.1\|761937_763152_-\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
NZ_CP041708.1\|WP_019269574.1\|733295_734030_+\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NZ_CP041708.1\|WP_019269588.1\|752840_753794_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041708.1\|WP_036428024.1\|736960_738394_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041708.1\|WP_158514660.1\|761168_761327_+\|lipoprotein	unknown	unknown	gnl\|CDD\|275340
NZ_CP041708.1\|WP_050777391.1\|740373_740886_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|350692
NZ_CP041708.1\|WP_019269591.1\|759864_760530_+\|LemA-family-protein	unknown	unknown	gnl\|CDD\|224618
NZ_CP041708.1\|WP_019269597.1\|765334_766519_-\|chromosome-replication-initiation/membrane-attachment-protein	unknown	unknown	gnl\|CDD\|226138
NZ_CP041708.1\|WP_165890785.1\|728495_729071_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|350691

Protein	Function_ID	Function_description	E-value
NZ_CP041708.1\|WP_036428027.1\|735938_736880_+\|1-phosphofructokinase-family-hexose-kinase	gnl\|CDD\|238570	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.	1.09362e-89
NZ_CP041708.1\|WP_036428011.1\|750927_752769_+\|ribonuclease-J	gnl\|CDD\|223668	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair].	0
NZ_CP041708.1\|WP_019269596.1\|764389_765325_-\|ATP-binding-protein	gnl\|CDD\|236353	PRK08939, PRK08939, primosomal protein DnaI; Reviewed.	3.35273e-36
NZ_CP041708.1\|WP_036428030.1\|732246_733092_-\|class-II-fructose-bisphosphate-aldolase-family-protein	gnl\|CDD\|238477	cd00947, TBP_aldolase_IIB, Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.	7.10441e-136
NZ_CP041708.1\|WP_019269583.1\|745464_746877_-\|hypothetical-protein	gnl\|CDD\|225420	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription].	1.31319e-64
NZ_CP041708.1\|WP_045076196.1\|749138_750593_+\|DUF285-domain-containing-protein	gnl\|CDD\|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	3.96031e-44
NZ_CP041708.1\|WP_019269595.1\|763280_764297_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|273675	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I. This model represents glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilize NAD (EC 1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In some species, NAD- and NADP- utilizing forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively. Two Pfam models cover the two functional domains of this protein; pfam00044 represents the N-terminal NAD(P)-binding domain and pfam02800 represents the C-terminal catalytic domain. An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine. This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria. This enzyme is described by TIGR001532. These sequences generally score between trusted and noise to this GAPDH model due to the close evolutionary relationship. There exists the possiblity that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to posess a limited E4PD activity as well as a robust GAPDH activity). There are a great number of sequences in the databases which score between trusted and noise to this model, nearly all of them due to fragmentary sequences. It seems that study of this gene has been carried out in many species utilizing PCR probes which exclude the extreme ends of the consenses used to define this model. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model. [Energy metabolism, Glycolysis/gluconeogenesis].	3.04025e-159
NZ_CP041708.1\|WP_036428000.1\|761937_763152_-\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NZ_CP041708.1\|WP_052007432.1\|739460_740408_-\|ATP-binding-domain-containing-protein	gnl\|CDD\|223581	COG0507, RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair].	7.87557e-22
NZ_CP041708.1\|WP_019269574.1\|733295_734030_+\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	7.76295e-61
NZ_CP041708.1\|WP_029333342.1\|726253_727312_-\|AAA-family-ATPase	gnl\|CDD\|365803	pfam00004, AAA, ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.	3.05042e-25
NZ_CP041708.1\|WP_158514660.1\|761168_761327_+\|lipoprotein	gnl\|CDD\|275340	TIGR04547, putative_liporotein, MOLPALP family lipoprotein. Members of this family are surface lipoproteins, about 900 amino acids long on average, found only in the Mollicutes (Mycoplasma, Entomoplasma, Acholeplasma, Mesoplasma, Spiroplasma). Paralogs occur, such as MCAP_0360, MCAP_0361, and MCAP_0362 in Mycoplasma capricolum. This family shares significant N-terminal sequence similarity with STREFT (Secreted Thousand Residue Frequently Tandem), described by model TIGR04512; several members of the STREFT family have been misannotated as GnsA/GnsB family proteins. For proteins in this family, we suggest the name MOLPALP (Mollicutes Paralogous Lipoprotein) family lipoprotein [Cell envelope, Surface structures].	6.15031e-07
NZ_CP041708.1\|WP_050777391.1\|740373_740886_-\|AAA-family-ATPase	gnl\|CDD\|350692	cd17934, DEXXQc_Upf1-like, DEXXQ-box helicase domain of Upf1-like helicase. The Upf1-like helicase family includes UPF1, HELZ, Mov10L1, Aquarius, IGHMBP2 (SMUBP2), and similar proteins. They belong to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	5.04386e-05
NZ_CP041708.1\|WP_019269591.1\|759864_760530_+\|LemA-family-protein	gnl\|CDD\|224618	COG1704, LemA, Uncharacterized conserved protein [Function unknown].	2.36513e-35
NZ_CP041708.1\|WP_019269597.1\|765334_766519_-\|chromosome-replication-initiation/membrane-attachment-protein	gnl\|CDD\|226138	COG3611, DnaB, Replication initiation/membrane attachment protein [DNA replication, recombination, and repair].	1.40846e-29
NZ_CP041708.1\|WP_165890785.1\|728495_729071_-\|AAA-family-ATPase	gnl\|CDD\|350691	cd17933, DEXSc_RecD-like, DEXS-box helicase domain of RecD and similar proteins. RecD is a member of the RecBCD (EC 3.1.11.5, Exonuclease V) complex. It is the alpha chain of the complex and functions as a 3'-5' helicase. The RecBCD enzyme is both a helicase that unwinds, or separates the strands of DNA, and a nuclease that makes single-stranded nicks in DNA. RecD is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	7.36271e-23

>NZ_CP041708.1|WP_019269583.1|745464_746877_-|hypothetical-protein
MDFNYSGETTTVEYKVTFDSKNPDNFLHTVSAFANTKGGKIFVGINDNNQIVGLKDPQTILENISEAIKTKIDPNPEFYCEIEEHNGLKFIVVSILKGEQTPYRYLTKKADAAYIRSGNQSIKASTNQLRNLMFRGTKESFDTLKTKIHWKQASFKSLNLELNKIGQQVNTVQQLTSLGLVKDEFLTYAGALIADNEFIKFSKIYTTRWNGNDKTNSDIVSLKTKEYKGSLIDIFLKTEQFIDDYNSIMWKKTDTKRIDYVDYPFLAVREALVNALIHRDYSINGSQIDVDIYDNRIEITSPGGMFDGTNIQEAPTWAVVSRRRNEVIADIFWRINYMEKRGSGLGKIIELYASQPNYTNDLKPIFMSNEHLFKVILWNLNYKKDNLFKSDKRNLFENNIDIKVVDSIDKSQDEIVRNYIKSVSSFTRKDIEKIANIKRTRANQIINSLLEENKIIKVNGGRSTEYKVKG
>NZ_CP041708.1|WP_050777392.1|740917_742171_-|hypothetical-protein
MINNVDDNLRRLDKIFCSIFDKINDTSIDELASEIVCSDLRNFVECIILKIYNVENKENYTVEYEFIQKAKKYVFLKSEFSEIKKIYNMLQSTVSHYKLEEDNAKRLMFRYYKYLTFIRTKMQKYGLNLLENLEKYPIYLNSQEKEYYEKISQKIDEIRKGLKIAKAEHAYIYNIKEFYVNKKAYYEVIFSSANDYVKKTDRTIAFTDKKIISNYATKIYLIESSIEILGNKISILIIDSFEIKIRECEFVNFCKIFNGPNTQVSKNELKLINECLNENKINLLDLITYYEKDISQLRENVVYRTKKKSTLFLDVLEKSKKIVDECKSGSNVIKYLLFNMKNIIIKRQKADVKNSNLSDLFLENSCIPFDNSPFVFSLPNHNPSMYDLLEIFNIDDRQEENLARQIKEDTESNFKLF
>NZ_CP041708.1|WP_050777391.1|740373_740886_-|AAA-family-ATPase
MKKIILSYNQKLWFGHRPDNEINYLYIHKYANNLDFIIEKLKTYTKKGYQGYSNLSDKWLNKNNISSEEKKIIIQKIFRDTQVAFIYGSAGSGKTTLINYMSQIFNDKSKIFLSHTNSSVNNLKKRIDSLNSKFMTITKYINTKGLECDILFVDEYGVVNDSDMKKSSWK
>NZ_CP041708.1|WP_052007432.1|739460_740408_-|ATP-binding-domain-containing-protein
MTVIWKKVLENNNSELLVLVGDIFQIESIGFGRWFNYSKEVMPKKAINELKEQYRTDNRSLQKLWKCARENKENIIDSLNRYGISKTLSDSIFKRKYDDEIILCINYDGFYGINNINRILQESNQNPVFYWGTQKFKKGDPIIFHTPEAIGKGIYNNMKGKILNIDIDDNKKYIEFHIELEKKINISDIDINKCQLLDKDDCESSSISFKVYKKQNTDLDEDDLTTIIPFQISYAISIHKSQGLEYDSVKIIFSNILENKINHNIFYTAITRAKKDLIIYWSEELEEKFIKSIELESDNKDISILKNMFPSFGKK
>NZ_CP041708.1|WP_036428024.1|736960_738394_-|hypothetical-protein
MGIVELSNISLFNDYLKLKFALIFIFNLCWIIPVLWSSINLIKNSKIKILEFNIKGIKGKFNEIDQKDETIFDKEIKQIIYLLYSSNTDYVVFDDLDRYKSIEIFEKLKQLNYLLNNYYKTKNKDKVVKFIYMVSDDLFDNESRTKFFDFIITIIPIKTSKTFVRKWLEAIDIDIDSEYIENILNIITNTRIFLNAINDYLIYKKLVMRRFQLKNSDKLNLFNIVLVKNLLPDEFQHLQNNRGIIYELLTKDKEDYCKWAIDSLKLKIKEIDELIMQTSYLFSGIGYKHEFIVRELTNILSINDDLDSEEINLGLSREQVKKTPFEEKDQTKVRVLTRMYENRKMKARVKYAASGGIGYGILEQEFTYSEFFEKFVTNKLKIRLATVRRNGYKEIDKLKSIKKDLVDSLYFCKELSINKLLKIIDWDNSNNQLAQKWFEELKRKDKTKNINNFFLIKSIFNLNLINEDYKKYINYID
>NZ_CP041708.1|WP_036428027.1|735938_736880_+|1-phosphofructokinase-family-hexose-kinase
MHNKIYIVSLSPSIDYILKFDNFLKNKTNRPKSQYMYAAGKAIHIPMLLNRLNIDNELLVFTNGSFETFFYNDLKKEQIRYKKFKSNGDIRINLKIIDNEQTESSSYAPEININELNKLKKYLNNILQKDDVLILTGSLPINTDTNIYAELVELANLKRAYSVVDTFKEPLLKVVEQQPFLIKPNKDELEATFNMKLKNDSDIINQSRVLLQKGCKNVLVSLGSDGAILVTGTKIYKASLPKWNYKVDNVAGAGDSMIAGFISKHLQTNDYIKALKFSLICGSATAFSYKIASKEFIDELSTYLDKIEVKEIN
>NZ_CP041708.1|WP_019269574.1|733295_734030_+|DeoR/GlpR-transcriptional-regulator
MLKDQRRQKILEIVNEKDFVTNKQLAKLLSSTIQTIISDISELDKEKKLYKVYGGAKSANSLAKRYELFDEEKQHINIDIKDLIAQKASEYVSNGDLIFLDTGTTTKQMIKYLINKKIIVVTNGYSIALELVEQDIEVILLGGSINPSTHATIGELALKNLDNFYFDKVFIGMNNLSSQHFYTTNIKEALIKEKAIKNSDKSFILMDSSKFGSKNVIKVDVLKETILISDKDTDEYKGLIINLE
>NZ_CP041708.1|WP_036428030.1|732246_733092_-|class-II-fructose-bisphosphate-aldolase-family-protein
MKASLKDQLLKARQNHYAIGAFNFDNLEMLKAIVEAAEESNSPIIAMITESAAKYIGKEIVIASANAIISNTKVPIVLHWDHGYDLNLIKWACDNEFSSVMLDASLDDFNTNVNKTLEIVNYAKSKNVEVESEIGHVGGKEDDIDSNINKYTSVDEAIKFVNLTQIDALAIAVGTSHGIFKTAPNLNFDRIKEIRDSINTPLVLHGSSGLSDTDLKKAINSGICKINIGTDLKLVYANSLKQWFKENPISYDARKFGRFAIDQMKKVIKQKLEILGSINKA
>NZ_CP041708.1|WP_165890785.1|728495_729071_-|AAA-family-ATPase
MQSIKAFLIENKMLPFLEQHSSEELINNSINYAIKNKLFIIKKEKVYTYQTYTDELNIAWYLTGKKKVKKLNHFKFKKYVNQIEQEVKKETNISNFKYDKSQVNALKKFINNRFIVITGGHGTGKITLIKGLVKLFKKVYPNSNFRIATPTGRAAARIKESFEESNATTIHKLLQYDVETRKFKKKIKIIH
>NZ_CP041708.1|WP_029333342.1|726253_727312_-|AAA-family-ATPase
MKKGAVINLIKYYVERNDYAFKNQAYEIAYDFEKMGDFQLFDYIVAMLSGNNIFVPQDLKNDLAFVTKVKIDDQKIFLPDSIKQDVVGLINATNHKVGVNKFLFTGLPGTGKTECAKLIARNLNRELFIVNFSTLIDSKLGQTVKNITSLFEEINNLVDPSKVIILFDEIDALALDRTNSTDLREMGRATTAVFQGLDNLNTQILLIATTNLFKHFDKALLRRFDSIINFDRYSKQDLINISEVIFNEYVQKFDNLTKNIRLFKKLIALYENIPNPGDLKNIIKTSLAFSDPNNPVDYFKRLYKNVLESNSTNFDSTDIELKYLQLKGFTLRETEILTGVSKSQVSRDLKGV
>NZ_CP041708.1|WP_019269585.1|748125_748299_-|hypothetical-protein
MFIFKTSILIKDNIVIKNEDVLKLIKGDFFRVYVEQENQNLFIKCNVWNEIRIIKLI
>NZ_CP041708.1|WP_045076196.1|749138_750593_+|DUF285-domain-containing-protein
MAKKKKNIKITSKNKEQNQNKKKKKKYLIVLAGLLLGTSLITGTAIGISKNKRKVVRKDDKNKKETVINLEDAIKINSRFLPIFYTENKNDVLKHINNKINKLKTYKKTIILSEDDVDLVFFKNTNSIKVIAKPDHKKYKGQVELRFQKTNVDQFLNSKDKFLGKFDSVNEDQIIKKIIELNKYNLQDIDFNTHFEIEIKNNIVTIKAKPDSYFYKGQITGYKFKIRTKIKDLIDTKNINNFEFDLQPDNKKIIDLIKNKNPELEDFDFENNFEIKIDDQKITIKPISDDYSDKLEIDFKVKPEPQSDQNEVYNKDDETELKEIGYFKNKYGQWQIKPIPKNVKKVPEVLPGFITNLKGAFAKNENSHISGLEKWDTSNVTNMIDMFKDAKNFNQDISSLDTSRVVDMGRMFSGASSFNQDISSWDVSRVTDMNSMFNGAKAFNQDLSEWNVNRVSYIKNFNTDSHPDFNNKKIPKKFVYLLNN
>NZ_CP041708.1|WP_036428011.1|750927_752769_+|ribonuclease-J
MSNKDNKKNLEINDTENENQINSYDDDGDQLNISIDEKEFKPYVFKQKEVKRQYQKTNIPTKIFALGGLEEVGKNTYCIEYDNELIMIDAGVKFPESTMLGVSAVIPDYSYLVENQKKIKALFITHGHEDHIGGIQYLVQQVKIPVIYTPKLAAMLIRDRLKEYKIEDKTIVKEYDADDVWKTKNFKVSYAALNHSIPDAFGILVQTPNGNIFSTGDYKFDWSPLGHFAELTKLASMGENGVELLMADSTNSEVEGYTQGEKSIISNIDKLFLQAKGRIFLTTFASNVHRIQHIIETAHKYNRKIVILGRSFERIIKIIRQIGHLKISEKEFIKSTDIDKYKPEELMILTTGGQGEPMAALSRIANNKHLSINIIPGDTVVFSSSPIPGNRADVEKLVNKLTRVGAKVIENTSDNKIHTSGHASQEEQKLLFSLIRPKYFMPMHGEYRMLKKHVETGESVNLEKGNGFIMANGDVLELLQGKAKIGKRVEADAVYVDGKDMTGKASNVIREREILSKDGLIAVVISLDSQTNRLIAQPRIISRGSFYVKDAGSIISDSIQIITNAVNEVLMSSKPTFAAIKKAIKSSLSPYIFRVKRRNPLIIPVILNKKLNR
>NZ_CP041708.1|WP_019269588.1|752840_753794_+|hypothetical-protein
MKNNNSSFFSSPRTQIKFFQWVGTIFAVIGMLISLYFLSKIDVKALDQSKQVLLALGYAIMGYMFWKTIISAVIILRFVKKSTDEELVANRYILASLSLNLGGFLTPWVLTSLPNVTTQSTIKPKWFLSRSFAIITTIGSAIFLGVLFWQLKTISPNTNWFDQSKEWYWILVGFIIGNGVLLVVGLLAFILFFNKNSKERFEGNTFTSFLMKTIAVFYLVIVTIELIVLMIYSILRLIGNIINTAARVLQADNALIGVLYFLFGLLTMFFQIYYVIFLTMMISQTIKGIWRKDGVITIKVYDKLKEKEDKYQLKHNR
>NZ_CP041708.1|WP_019269591.1|759864_760530_+|LemA-family-protein
MANTLDEMNDPILDKGRQVNVINKRILITVGKGSLVFEIILWILGIIPGIIFTFIKIKAKNYLAQLEQKLQHNASQIDNYLEQRVVVMQNLASLLSKSIDLDKDVMKTIAAYRSGINLNDENRTNISTQLDKTIKGLSLQVENYPDLKSHDSIKQALQQNLYLQKEITAARDIYNDTVFQWNRSINEWPAKMIVAAKMQYTTRIPFITTTEIKRQANQDFF
>NZ_CP041708.1|WP_158514660.1|761168_761327_+|lipoprotein
MKKLLTLLGSVGLIASTSAAVVACGDRSNTEMNNSEDKAQPDGKAQPDGKMK
>NZ_CP041708.1|WP_036428000.1|761937_763152_-|phosphoglycerate-kinase
MNYNNKKTLKDIDVKNKTVLVRVDFNVPIQNGVITDDNRIIAALLTINYLIENDAKIVLFSHLSRIKTNEDKLKKSLAPVAKRLEELLNKKVKFISQTRGKELEQAVSLLQTKEIILVENTRFEDVWDNQVVKYESKNDPELGKYWASLGEVFVNDAFGTAHRSHASNVGIASNIKVSAIGFLVEKELKMLSQAVNDSKKPFIAILGGAKVSDKIGVIENLLPKVDKLLIGGGMSYTFLKAQGRSIGKSLLEEDKIDLAKHYLEVGKDKIVLPVDTACAKEFADVKPTIFETNIPDEWDGLDAGPKTIEMYKEEIKKAKTIVWNGPVGVFEFKNFETGTKFICQAIAEQTKTGAFTLIGGGDSVSAAINMGFKDNFSWISTGGGASLEFMEGKELQGISAIQDK
>NZ_CP041708.1|WP_019269595.1|763280_764297_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MSKKVAINGFGRIGRLTFRRLFEKGVDIVAINDLTDTKTLAYLLEFDTAQGIFCEDEISYTDNSIIVKGKEVKVFAEKDAANLPWSDLKIDLVVESTGFYTDKEKASAHIKAGAKKVIISAPATGDLKTIVYGVNHKSLISDDVIISGASCTTNCLTPFTKALDDAFTIKKGFMTTVHAVTNDQRLLDLNHKDLRRGRAAAWNIIPSTTGAAKAVSLVLPHLKGKLDGYALRVPAITGSITDLTVEFETQNLTIDQINNAVKKALQEDSDLAQAMKYETKPIVSSDVIGSKYGSIFDATLTKVMNVDGKQLVKVCSWYDNESSYVSQLVRTTIYFMSL
>NZ_CP041708.1|WP_019269596.1|764389_765325_-|ATP-binding-protein
MKLDDYKNNPKIKKIISDSLNSNDVITDQVLLDNKNILDEFLFNYKECSLDEKCSQIIKNYQVDLVFKDHLFYLKNVLCIHSKQTEKLFIIKKNYWFSDFDLNLFSLTYDEYFKNELNNSEFSLLDQKEKDIRKKLLSNILKFVQKNSKKGVYLYGHSGIGKTYMFKVLANTLASKNKTVIFSTLRSLIDKLKESFNSSEINSLELMKKIKTVDFLFLDDIGGENLSLWARDDFLFEVLNYRMENQKATFFTSNFSINLLEKNLQFTRQYNNFLNSKDVFELEKIKIERLISRIKTLSKELFFLGSNKRKN
>NZ_CP041708.1|WP_019269597.1|765334_766519_-|chromosome-replication-initiation/membrane-attachment-protein
MLSRDFSYSVSSNFELSQEQYKSLTCLYQPLISTQAISLYLTLIQEVKISNILKEEALESKRLLNITNFSFKELSKAFDLLNAFKLIKVYVKKSDYSLIKFEILEPLKSNEFFNHKYLNNLLLNKLQANDYEITRFMLVNETQINTNQYQEIVVDLTDVYDQSLICDFSCSDFEVKKTPNYLKKLNQFLNLDYLITSLKNKNISLDFLDQNTLKSLYELLTIKKLTEDQIVSLIINSYNSYNKNIDLNLFKNLLIDLITKKHTNNTNLELIELINKTNWFEYSKQKYDIDLSKYTTVFENIKHQYCLSNGIINCLIDFSYKKNNGQIIVKYIAKIAKTLFDKNINTTLKVMQFLKNIQNKTTTHDYETIFKSDDFNLQAEPIFEFNEEELKCLV

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Crispr_ID: NZ_CP041708_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041708_3

896009-896183

Orphan

Consensus_repeat	Method
AATCAAGATTTATCAAAATGAGAT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP041708_3

>merge|NZ_CP041708|3|896009-896183|CRISPRCasFinder
AATCAAGATTTATCAAAATGAGATACTTCTAACTTAGAATAAATAGATGGAATGTTTAAAGGAGCACACAAGTTCAATCAAAATTTATCAAAATGAGATGTTTCAAATGTTAGAATATTTGATTATGCATTTTATGGAACAAAAGCATTTGATCAAGATTTAAGTGATTGAGATG

>NZ_CP041708|3|3|896009-896183|CRISPRCasFinder
AATCAAGATTTATCAAAATGAGAT	ACTTCTAACTTAGAATAAATAGATGGAATGTTTAAAGGAGCACACAAGTTC
AATCAAAATTTATCAAAATGAGAT	GTTTCAAATGTTAGAATATTTGATTATGCATTTTATGGAACAAAAGCATTT
GATCAAGATTTAAGTGATTGAGATG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041708.1\|WP_019269681.1\|901552_904393_+\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NZ_CP041708.1\|WP_019269679.1\|898310_899261_-\|DNA-polymerase-III-subunit-delta	unknown	unknown	gnl\|CDD\|224383
NZ_CP041708.1\|WP_036427848.1\|880373_881687_+\|thymidine-phosphorylase	unknown	unknown	gnl\|CDD\|274244
NZ_CP041708.1\|WP_029333391.1\|884547_885951_+\|magnesium-transporter	unknown	unknown	gnl\|CDD\|225148
NZ_CP041708.1\|WP_036427842.1\|892545_893844_-\|adenylosuccinate-synthase	unknown	unknown	gnl\|CDD\|234904
NZ_CP041708.1\|WP_019269685.1\|908795_909728_+\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|273540
NZ_CP041708.1\|WP_036427856.1\|887731_888466_-\|DUF285-domain-containing-protein	unknown	unknown	gnl\|CDD\|308794
NZ_CP041708.1\|WP_019269687.1\|911178_912108_+\|DNA-binding-protein-WhiA	unknown	unknown	gnl\|CDD\|224398
NZ_CP041708.1\|WP_019269680.1\|899546_901544_+\|excinuclease-ABC-subunit-UvrB	unknown	unknown	gnl\|CDD\|235395
NZ_CP041708.1\|WP_019269674.1\|890680_891232_-\|hypoxanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|223707
NZ_CP041708.1\|WP_036427839.1\|894128_894929_-\|TatD-family-hydrolase	unknown	unknown	gnl\|CDD\|238635
NZ_CP041708.1\|WP_019269682.1\|904385_905495_+\|dihydrofolate-synthase	unknown	unknown	gnl\|CDD\|223362
NZ_CP041708.1\|WP_019269675.1\|891254_892553_-\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|176464
NZ_CP041708.1\|WP_036427858.1\|885952_886615_+\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	unknown	unknown	gnl\|CDD\|234649
NZ_CP041708.1\|WP_019269684.1\|907231_908812_+\|diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|223754
NZ_CP041708.1\|WP_036427819.1\|909736_911167_+\|diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|376615
NZ_CP041708.1\|WP_165894312.1\|877840_878515_-\|deoxyribose-phosphate-aldolase	unknown	unknown	gnl\|CDD\|234784
NZ_CP041708.1\|WP_019269668.1\|878526_880209_-\|phospho-sugar-mutase	unknown	unknown	gnl\|CDD\|100092
NZ_CP041708.1\|WP_019269683.1\|905522_906197_+\|folate-family-ECF-transporter-S-component	unknown	unknown	gnl\|CDD\|275311
NZ_CP041708.1\|WP_036427828.1\|896838_898308_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274765

Protein	Function_ID	Function_description	E-value
NZ_CP041708.1\|WP_019269681.1\|901552_904393_+\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NZ_CP041708.1\|WP_019269679.1\|898310_899261_-\|DNA-polymerase-III-subunit-delta	gnl\|CDD\|224383	COG1466, HolA, DNA polymerase III, delta subunit [DNA replication, recombination, and repair].	5.13058e-22
NZ_CP041708.1\|WP_036427848.1\|880373_881687_+\|thymidine-phosphorylase	gnl\|CDD\|274244	TIGR02644, Thymidine_phosphorylase, pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff. [Purines, pyrimidines, nucleosides, and nucleotides, Other].	0
NZ_CP041708.1\|WP_029333391.1\|884547_885951_+\|magnesium-transporter	gnl\|CDD\|225148	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism].	6.55263e-79
NZ_CP041708.1\|WP_036427842.1\|892545_893844_-\|adenylosuccinate-synthase	gnl\|CDD\|234904	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional.	0
NZ_CP041708.1\|WP_019269685.1\|908795_909728_+\|thioredoxin-disulfide-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	3.60077e-126
NZ_CP041708.1\|WP_036427856.1\|887731_888466_-\|DUF285-domain-containing-protein	gnl\|CDD\|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	7.58124e-53
NZ_CP041708.1\|WP_019269687.1\|911178_912108_+\|DNA-binding-protein-WhiA	gnl\|CDD\|224398	COG1481, COG1481, Uncharacterized protein conserved in bacteria [Function unknown].	6.16137e-53
NZ_CP041708.1\|WP_019269680.1\|899546_901544_+\|excinuclease-ABC-subunit-UvrB	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_CP041708.1\|WP_019269674.1\|890680_891232_-\|hypoxanthine-phosphoribosyltransferase	gnl\|CDD\|223707	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism].	6.33877e-66
NZ_CP041708.1\|WP_036427839.1\|894128_894929_-\|TatD-family-hydrolase	gnl\|CDD\|238635	cd01310, TatD_DNAse, TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.	1.08645e-97
NZ_CP041708.1\|WP_019269682.1\|904385_905495_+\|dihydrofolate-synthase	gnl\|CDD\|223362	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism].	9.32674e-66
NZ_CP041708.1\|WP_019269675.1\|891254_892553_-\|adenylosuccinate-lyase	gnl\|CDD\|176464	cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase (ASL)_subgroup 1. This subgroup contains bacterial and archeal proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).	0
NZ_CP041708.1\|WP_036427858.1\|885952_886615_+\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	gnl\|CDD\|234649	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.	1.58008e-56
NZ_CP041708.1\|WP_019269684.1\|907231_908812_+\|diacylglyceryl-transferase	gnl\|CDD\|223754	COG0682, Lgt, Prolipoprotein diacylglyceryltransferase [Cell envelope biogenesis, outer membrane].	1.02667e-23
NZ_CP041708.1\|WP_036427819.1\|909736_911167_+\|diacylglyceryl-transferase	gnl\|CDD\|376615	pfam01790, LGT, Prolipoprotein diacylglyceryl transferase.	1.69938e-22
NZ_CP041708.1\|WP_165894312.1\|877840_878515_-\|deoxyribose-phosphate-aldolase	gnl\|CDD\|234784	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional.	3.50023e-125
NZ_CP041708.1\|WP_019269668.1\|878526_880209_-\|phospho-sugar-mutase	gnl\|CDD\|100092	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NZ_CP041708.1\|WP_019269683.1\|905522_906197_+\|folate-family-ECF-transporter-S-component	gnl\|CDD\|275311	TIGR04518, conserved_hypothetical_protein, ECF transporter S component, folate family. Members of this model are the multiple membrane-spanning S (specificity) component of ECF (energy coupling factor) type uptake transporters. All seed members were found in the vicinity of the bifunctional enzyme folC, involved in making active cofactor from imported folate. However, some species have multiple members of this family, suggesting some diversity of function. [Transport and binding proteins, Unknown substrate].	8.93282e-35
NZ_CP041708.1\|WP_036427828.1\|896838_898308_-\|hypothetical-protein	gnl\|CDD\|274765	TIGR03752, conj_TIGR03752, integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition. [Mobile and extrachromosomal element functions, Plasmid functions].	0.00297957

>NZ_CP041708.1|WP_036427839.1|894128_894929_-|TatD-family-hydrolase
MIDDNKIFDNHIHFNDDLKYKDANIEQLIKEAQKEHVTAWLCSSFDLTSSKKAIEFSEQFENVFASIAIHPNEVQNFNDSVFDELEQLITNKKVVCIGETGLDYFYSKEDIKKQKEFFKKHIELAIKYNKVLQMHIRDQKDQFQAYDDVIEIIKDLNQVIKVVHCFSANDVYAQKFLDLDCYINIGGAVTFKNAKDLQKAVKIIPLKKMLLETDAPYLAPDPYRGQVNHPKYIYLTALKIAELKNIDVKEVIRITTQNSKKIFNLN
>NZ_CP041708.1|WP_036427842.1|892545_893844_-|adenylosuccinate-synthase
MKNNYKSLVIVGSQWGDEGKGKITDYFSQKADAVVRFAGGDNAGHMIEFNNKRHKVTIIPSGVFNPKVKNIIGNGTVINLKSLVNEIKRLNESNISTDNVYISDRAHLIFDWHTLIDQLQEENRKENKIGTTKRGIGPSYADKAARYGIRICDLKSPNFKEIFKENLDYHNEIITKVYNHKPLDFDQVYNELLTNYQLIKNNIIDSGYEVSNLINENKFVLFEGAQGVLLDIDHGTYPFVTSSNCSANNASIGTGIHAKQIQKVIGIVKAYNTRVGSGAMPTEIKTELANKLRERGREYGSNTGKPRRIGWLDLVALKYAIRVGGIDQLFLTLFDVLDTEEKIKICTAYKLDNQIIHTIPANENDFKRCEPIYEELDGWNEDITKITSFEQLPINAQNYIKRIQEIVNVPFLGFSVGPDRKQTILIKGEFDD
>NZ_CP041708.1|WP_019269675.1|891254_892553_-|adenylosuccinate-lyase
MISRYQIKEINQIWSDENKYNTWLKVEQLVCQAWAKLGYINKQDILKINNNLKVDLNRMLEIEQETKHDVVAFTRMLSEQLDSESKWIHLGITSTDIVDTAQNYLIKQSNQIVDNELKNISDTLKKLAFEHKNTLIMGRTHGMYGEPTSLGLKFALWFDEFQRHIKRFSLAKSDIQVVKISGSMGNYANLEPIIEEYVANKLDMNVDSLSTQVCQRDRHIFLVEVLANIASTLEKISTEIRLLQRSDVNELAEGFFKNQKGSSSMPHKKNPISSENVAGLSRYIKSIVNIVLENNNLWHERDISHSSNERIYLPDIFNLIIYILKRMNETLTNLVINQSQMLNHIKQAKNIYFSQRVLTFILLNYKNVTREKIYDLIQQITFKCFKDQSDFKDEVLKSSLTEYVSIQQLEELFDDQFFLRHIDYIFNRVFNN
>NZ_CP041708.1|WP_019269674.1|890680_891232_-|hypoxanthine-phosphoribosyltransferase
MYDLKNVKKVLFTKEQINERIKQVAKEVKKYYLEQPPVNGPLITIGLLKGCVIFNTEFVLNFDYPIQMDFMAVSSYSGMQSTGAIKIKLDTSLDLTNRDVLIVEDMVDTGLTLSKVKEHIIYKGANSVKVVTLVDKKDFHTVDFTPDWNCFDIDDYYIVGYGFDCNEDYRNLPYIGLYQPDNN
>NZ_CP041708.1|WP_036427856.1|887731_888466_-|DUF285-domain-containing-protein
MSTLSCITIAGVVGGAVNYKIVNKVDKSKPPVLVKQLKKAVYNDDKTECLEIGYFKNSHGEIQIETFPKTVNKVPKNLPKQISSLSLAFHLNLNSQITNLDKWDTSNITNMSVMFAGAEKFNQDISKWNTSNVTNISGMFIWSNSFNQDLSSWDVSNVTNMHSMFYGANSFNQNLSSWDVSRVINMNGMFYGAKSFNQDLSNWDTRNLSKNVHTKNGITYTGWTNFNKDAHPDFKDNKLPRFPK
>NZ_CP041708.1|WP_036427858.1|885952_886615_+|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB
MRLRKKAWTEQFLNQHTSYLIKYGKKINLNEIFLNNNLTCLEIGCGKGQFLTTLALKNPNLNYIGMEKSSTITAIGLKKSLKEFQNNSKKMTNINYLNKYAENLLEIFYTDSFSRIYLNFSDPWPKARHYKKRLTYLGFLDIYSDILIKNGFLEFKTDNDSLYNFTLEQLKLTNKWETISNTLDLYNDQELLKDNVPTEYETKFHLANKNIYKIVIKNLK
>NZ_CP041708.1|WP_029333391.1|884547_885951_+|magnesium-transporter
MVDLENKEQEILEFYNNKEFDKCIEIIKKLRYADVGEILNYLDEKIAFNLYKKLEINKASQIFNYLSFDLKEYILTNLNQTKIKQLINDLYTDDIINAVESMPVEVVKRVFNAASKEQKKEIASILKYDIDTAGSIMSVNFLSVKQTTTVSKTIKEIQKNHDDYDEIDDVFVVNKLNQLVGSIEVKDLILNDMNTKIENIMNTKVISINSNQSQEDASNALKKYDISTLAVVDNNNVLVGIITSDDIIDVLIEETNEDMQKYTGIRTNETNYFDTSIFEMFISRIWSLVLMLGLTIITNSLLLIIFQKYNWTPAIKTKEELLFMLIPLSIILSTVIICCANQTLVMIRRAISLEQINKKSLKTIALKELVVSLMIAFVLIIVNLLKMILIYAIKYNANLTNINIWNSILISSAGIFISIIFANLLSLFLPLIVKKIGKDSSSVSLPLFALIIDILCVGVFLGIGLLV
>NZ_CP041708.1|WP_036427848.1|880373_881687_+|thymidine-phosphorylase
MFTFTDIIEKKKHNIELTQEEISWLINSYTKNEITDYQMASFCMATYFTDMTARETAFLTKAYIESGDRYDLSKISGFKADKHSTGGVGDKTSLVYAPLVASYGIKVCKLSGRGLGKTGGTVDKLESFPGWKSEVTNDEFVDVINKANMSLIAQSDNIVPADKKIYALRDVTGTIDSMPLIVASIMSKKLIVENDGLILDVKTGNGAFMTTIEDAKDLANRMIEVGKQYNRKVAVVLTNMNKPLGRAIGNAIEVKEAWETLNGNGPKDFNELISTLVGITLLQAKIFTDLATAKQDVLKRLQSKQAAPYLKEFVTAQGGDWSVLENYDEVFKCKNKIEIKAVNSGFIRYKRAEEFGMILIELGAGRFKKTDTIDRAAGIYLDKQYGDYVNTGDVIMTLYTNREVNLKWKEMVHETYELLDKEPVKEVIWEIISDDVK
>NZ_CP041708.1|WP_019269668.1|878526_880209_-|phospho-sugar-mutase
MSFNKLDKTYLSWVNHPNLDPELKDLLNKADDDELNAAFNLELKFGTAGIRGILGAGPGRFNVYTIKKVTIAYVKLLKSKYIDQLDKGVVIGHDNRHNSKKFAKLVADILTSFNIKAYLFKDNQLQPTPVVSFATKQLNCIGGIVITASHNPAEYNGYKIYDPYGCQLMPNDTDLIASEMNKISNILDWTFQANDNLLQVVDQIVIDKYFEMIKNLEFYKDNKASKPNLKIIYSAVNGTGSLYTPIVLKQSGYQIIEVKEHAFEDETFKNVINPNPEFDPAWKIPLEYAKKYDADIIILNDPDADRFSMAVKHNNEFIRLNGNQTGAILIDWKLSNLKCLNKLPKNPALYSSFVTSDLGDRIANETYNTTIIKTLTGFKWMGQEILKEVDNGLNFVFAYEESYGYVIDDSTRDKDGIQASIIAAEACWYYKNQNMTLVDYLNQLYEKYGYYFTTTYNLNFKPEEKDSKIAPIMKLLRSNGIKEINNLKVIKTEDYINGLYNMPSEDFLKFYLEDKSWFAIRPSGTEPKLKIYFVIVDSSLQKAENKAEKIYKELKAILNI
>NZ_CP041708.1|WP_165894312.1|877840_878515_-|deoxyribose-phosphate-aldolase
MEIKLNKYIDHTLLKPEATKQDIINLCNQAIQYDFATVCVNTCWTSFCKELLKNSNVGITNVVGFPLGACLTEVKVFEVKKAIENGCDEIDMVLNIGALKDKDYDLVLNDMKEVKKAANDHVVKVILENCLLTREEIIKACELAVQAGLEFVKTSTGFNKSGANIEDIKLMSKVVKNKAQVKAAGGVRTYEDAIEMINAGASRLGTSGSVEIMLKQENKSKLLI
>NZ_CP041708.1|WP_036427828.1|896838_898308_-|hypothetical-protein
MKELYLKLLNLSLNILKTNKLKYFILKNEEFKLKYLNLINDILTLETNHNQSLDDKVFAKTFAKAFILITKPTTKQRFEVNDDITIEQIENNYKQLVSYIVKEFKVVKSKLVSENEQISDEIINQNAILTDQVISRIEARLSKQEQSKEQKTSENFSKTTTVVTETQTQQEVENKQAQTSQQTDFLNSFNPNMFSNLNNADLPVLPSQDPRFHSYKGKPKFMPYLKIALCVLAVISTILLVSSLLFLSYTTIDISSSNYANIIESNKNWSDLIKVGDKELLKAWPIGISQIVLMFKRAFGLPILIYMIPTILICTYTKKTFSNPREKYRIPLFPVIFFIMFFIGLTVNLYEFTSLEKFKEAWKLFLSGMTSKTDIDINKFFELVLKDHALKFQLGSALVISSLIVTILTLLLAIVLIFVNPKIDRQKIVKATLEHQKAVMAIMQGQKYEIDPSLYEEDEIEIKHPSKLKSFFLKLKNKKKKENNKDKNN
>NZ_CP041708.1|WP_019269679.1|898310_899261_-|DNA-polymerase-III-subunit-delta
MYFFYSEDIFLLNNQIKKTIKELQQKDQYDVLSFSLIEDDFNTIYDNVTNLNFFSSKSIIVISDAYFVTEIKTNFNKNYSLNKLEIMLKNFNPNNIIIFGLNSNKFSKKLKIAKYIESNFNVKYLSLWDEKQTIKYIIDYLKSKNKIIDINLASQIYNLLPNDLQIITNEINKLANLKSELNIDIIKTNLNKYHNEDIFKLVDAFINNNIDKFIKLYHDYILLNDDIIGLISLIDTNLSFYRDIVILKKQFKSEEQISTILKSHIYRVKLAVNNSYDINTLNDKIKIVYKIYKGIINWNINKKTLVEYMLIKNMKG
>NZ_CP041708.1|WP_019269680.1|899546_901544_+|excinuclease-ABC-subunit-UvrB
MFIANNKYKLVTKYKPSGDQNQAIEKLNKGLIENKKHQVLLGATGTGKTFTIANIIAKHNKQALVIAHNKTLAMQLYYELKEMFPENRVEYFVSNFDFFQPEAYIPSKDLYIDKDSRQNMELDMMRLSACNALLTRNDTIVVASVAALFALQNPLEYSSAFIELKVGQKIKRNELLTWLVRSGYTRNDIENQLGSFSAKGDVVKIVPGWVNNIMFRISLFDDEIESIHTLNTITNSILDNITTVTIHPAQSYITPQDKLKTICNNIRNELVQRLAELQSENKLLEAQRLEQRTKYDLESLEEFGFCSGIENYSSHLDFRSKGQRPYVLLDYFNNDFITIIDESHITLPQIRGMYNTDRSRKLTLVEYGFRLPSALDNRPLNFDEFNSLIKQVIYTSATPGDYELDLVNHQVIQQIIRPTGLLDPQIEIRKTTNQIDDIINEIHLRKLQNERVFITTLTIRMSEDLTAFLQEKNIKVAYLHSELKTLECSEILNDLRKGVYDVVVGVNLLREGLDLPEVSLVCILDADKQGFLRNYRSLIQTIGRVARNVNGKAIMYADTVSQAMDEAIKETNRRRRIQEEFNKKHNITPKTISKAISESILSEQTKKTLAKAKKIKDKKQKLQTIQQTIDTLRQEMLQAAKELDFERAAILRDTIIELENEKNTN
>NZ_CP041708.1|WP_019269681.1|901552_904393_+|excinuclease-ABC-subunit-UvrA
MSTDKIIIKGAREHNLKNIDLELPKNKLIVFTGLSGSGKSSLVFSTIYQEGRRRYIESLSAYARQFLGGNEKPDVDSIEGLSPAISIDQKTTSHNPRSTVGTVTEIYDYLRLLYARIGQPYCINNHGQIKAVSIKEIVENIKQSTSDGEQIHILSPVIRDKKGTHIDILEKLRNDGFIRVIVDDQLRMLDDQINLEKNQRHNIDIVVDRIIYHNNDEINSRIFTAVEMGLKYSNNLIKIAFPNSNKQEKLFSTSFSCKVCDFVVPELEPRLFSFNAPLGACELCNGLGVSLEPDINLILPDLKLSINQGGVVYYKNFMHTKNIEWQKFRILCDYYYIDLNTPLKDLTQKQRDIILWGSDREIDIKIVTENNNKYEKYDFIEGNAALIKRRYFESKSEEARKWYSKFMSSKICKQCKGSRLNDIALSVKINEKSIFDYTNMSISEQLDFLLNIDLTPTQAMIAKLVLDEIISRTNFLNEVGLGYLNLSRTATTLSGGESQRIRLAKQIGSQLTGILYVLDEPSIGLHQKDNDKLIKTLKHLRDLGNTLIVVEHDEDAMKSSDWIVDIGPRAGEFGGEITFSGTYQDILKSDTITGRYLSRKEGIVVPKTRRGGNGKKIEIIGASENNLKNINVTIPLNKFITITGVSGSGKSTLLEDIVYKGIHNNLSKEYLPIGKVKEIKGIENINKAIYISQEPIGKTPRSNPATYTSVFDDIRDLFTNLPEAKIRGYKKGRFSFNVHGGRCEHCQGDGVITISMQFMPSVEVVCEICDGKRYNDETLTVKYKNKSIADVLNMSVSEAYVFFENIPQIKQKLETILEVGLGYIKLGQNATTLSGGESQRIKLSTYLLKKQTGNTMFLLDEPTTGLHVDDVKRLIGVLNKLVDLGNTVLCIEHNLDFIKVSDHIIDLGPDGGEYGGQVVVTGTPEQIIDHPTSYTAKYLKDYIVND
>NZ_CP041708.1|WP_019269682.1|904385_905495_+|dihydrofolate-synthase
MISIDQELFPIIQRLNREVVFDKVLDELNHPEKFLKVINVVGTNGKGSTSFYLSKGLLKKYQKVGLFISPAFLYQNERIQINNTPISDNDLKSYLHKIDYLIKKYQLHFFEIWTLIMILYFKDQKVDIVVCEAGIGGIRDTTSFLTNQLFSLCSSISYDHMDMLGNSIDEIIYNKVNIAKPNTKLFISHDNLKYKKIINKQIINKNVELIYTDLYEDKIIYQKANKGLVKKVLEELGIFDLDIFELEPPLGRFTTLQTFPNQIIIDGAHNVDGIKKLIQSVKSLNKEFIVLYASITTKEYLKSLELLDKNFKEVYICEFDYIKSWSIEHINHKNKIKDWKIFLKNNSKNIIICGSLYFIPLVYTFLKNN
>NZ_CP041708.1|WP_019269683.1|905522_906197_+|folate-family-ECF-transporter-S-component
MEFNSLSVYWITTAIFAVLLISMWVLGLWMEGFKLKTFTIKNITIIGTLVALSVILSYVVNRNFLQILGTRITLGYFVNFLIGMVFGPLAGILAGIATDLIGTMIVGAAQWHIGFVFAKSMLGFLGSLVFVFKNNKHWVWLMVWSYAIGLFLVIFVVHPISFATVGGPSLAVAYSLTKFIVYPIELVLYPLLTYTSIRVIYILVKKDLNSKNKQWILRNDAVIF
>NZ_CP041708.1|WP_019269684.1|907231_908812_+|diacylglyceryl-transferase
MSTTYFEWIKQHGDPSLARSFFQLIPAYPIFMFLGISSVIIASIICLKLKAIPLKEFEISIFIIVPFGIFGATIFGKVFLPFYQHSNTWYRIFFFWEPGMSLFGSLLFGILAGIAWFLKRSKTTMISLWVYADCIIPNILLGQVIGRWGNFYNHEILGQIVDYNSLYWLPESIRNNLFYFPNFVEFHHLNNPTDLLVNHYNWWDFNSNTWSEVQNFVNNNNQTIKDVLNQKITYHQPLFLYESIANLFLWLIVMFIINNLTRWINHPQPWELCPKAYPGWFNKQYKYLSEEQIINFNSIVPIKYKKITIDIENKQTVVLKLSFYQVWNKAFYYYEPDHKKVSQLESKIEEFNKIKNKDRLNFQNIKSNCKHQLDLINKKYRFKLDNLNKNSLEYQKIINLKSEEIKKNKELLMISKNNYYQKYGFWNLFFNINIFSKEIEKLNNPNQFKVIRSGVLTGCYILGYLIIRIILKTFRQNHELFIQNHRAINFIILSAILLSGIFIILLTQFISPYKWRQIGWLYERSY
>NZ_CP041708.1|WP_019269685.1|908795_909728_+|thioredoxin-disulfide-reductase
MKGLTNEIYDVIVVGSGPAGLTSAIYTARAGLKTVIYEQSAPGGKLIKTDLIENYPGFETIQGPDLASKMYLQALSLNASVEFVGVDSIFKNDDDIFEVSLANGETKKAYSVILATGTQENKLGIKGEDKLYGKGVSYCAVCDGAFYKNKPVAVVGGGYSAVQEAMYLSQLVDKVYLIVRRDVFRADANKVAKLKSQPNVEFLLKSQVKEIHGTEKVESLTINTPNGEKKLVVSAIFPYIGSTPLIDSVKHLCIENEKGYIPTNDKMQTEIKGLFVAGDVRDVPLRQIAIACGDGAIAGQMAVEYVQEVK
>NZ_CP041708.1|WP_036427819.1|909736_911167_+|diacylglyceryl-transferase
MESNLKLKIDKRVIIYTSLWIILSALIISLIVLSSKYFRIDWVQNRGFDTVLEYGNVKDVYLTKSNGTGGIRVYALTMTLGMIVAIGFSLYNFNKKDLSVSELAIGVIFIIPCSLFGASFFGKLNAEGIGRHANGSTFWGLFAFWEGGMAIHGGVYVGSIVGLLIFYIIGRKTKVSLLVYADCIIPNILLGQAIGRWGNFFNHEVLGTPVAKIANSIPSHSDKAIDQIFSTYLQTHSRPLFLPGFILKNCLSIYSGENQVINNISLENGNVVLLSPIFFYESIALLLGWFVIMFIIPNVWKLFIKPIDKNNNVYKIDHKFSFYQFFNPWLKSTETKLSSKDAWKKTLNENVYDNASQTYINLTNNIDSKDYLEKKLVKNYVLNKLNNKNNYPITKAGVQMFSYFLVWSIVRYVLEAQRPNDHLFIMHYKNFSLFVIGLSAIVGLIGMILSQHFLPSVFRKPGWLYEVEYFKVRKIN
>NZ_CP041708.1|WP_019269687.1|911178_912108_+|DNA-binding-protein-WhiA
MSFALEVKEEIVMHSFNEEQKLAYLSGFIRYSSDIIFSNNTSKIRFSTISNKIARTLLSFCRQLFDGQVEISIIQSQVLKKHKNFVLTLIGNINKFLQKLRIYDQNNQKIYVFKVKEEIKDKTSIIRAYIAGIFTAIGSVNSPKTSNYHLDLQFKTKIDAINFIELTNDLGFNFKLLERTSNRYVCYIKKSIMVSDFLKLIDAYNSVMQFENERISRDVYNSINRVNNFDISNQTKTLVTGKKQIEIINYLKQTNQFHLLSKKAQVLADLRLNFPDYSYNELVQEMQKMGYEITKSGISSLFKNIEKLS

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Crispr_ID: NZ_CP041708_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041708_4

896321-896569

Orphan

Consensus_repeat	Method
AATCAAGATTTATCAAAATGAGAT	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_CP041708_4

>merge|NZ_CP041708|4|896321-896569|CRISPRCasFinder
AATCAAGATATTTCAAAATGAGATGTTTCAAATGTAACAGATATGACACAAATGTTTTTACAAGCAAAACAATTTAATCAAGATCTTAACAATTGAAATGTAGGTAACGTTAAGAAAATGAGAGCGATGTTTCGTGAAACTGAAAAATTTAATCAACCTTTAAACAAGTGAAATGTTTCAAAAGTTGAAGATATGGGAAATATGTTTATGCAAACTAAAGAGTTTGATCAAGATATTTCAATGTGAAAA

>NZ_CP041708|4|4|896321-896569|CRISPRCasFinder
AATCAAGATATTTCAAAATGAGAT	GTTTCAAATGTAACAGATATGACACAAATGTTTTTACAAGCAAAACAATTT
AATCAAGATCTTAACAATTGAAAT	GTAGGTAACGTTAAGAAAATGAGAGCGATGTTTCGTGAAACTGAAAAATTT
AATCAACCTTTAAACAAGTGAAAT	GTTTCAAAAGTTGAAGATATGGGAAATATGTTTATGCAAACTAAAGAGTTT
GATCAAGATATTTCAATGTGAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041708.1\|WP_019269681.1\|901552_904393_+\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NZ_CP041708.1\|WP_019269679.1\|898310_899261_-\|DNA-polymerase-III-subunit-delta	unknown	unknown	gnl\|CDD\|224383
NZ_CP041708.1\|WP_036427848.1\|880373_881687_+\|thymidine-phosphorylase	unknown	unknown	gnl\|CDD\|274244
NZ_CP041708.1\|WP_029333391.1\|884547_885951_+\|magnesium-transporter	unknown	unknown	gnl\|CDD\|225148
NZ_CP041708.1\|WP_036427842.1\|892545_893844_-\|adenylosuccinate-synthase	unknown	unknown	gnl\|CDD\|234904
NZ_CP041708.1\|WP_019269685.1\|908795_909728_+\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|273540
NZ_CP041708.1\|WP_036427856.1\|887731_888466_-\|DUF285-domain-containing-protein	unknown	unknown	gnl\|CDD\|308794
NZ_CP041708.1\|WP_019269687.1\|911178_912108_+\|DNA-binding-protein-WhiA	unknown	unknown	gnl\|CDD\|224398
NZ_CP041708.1\|WP_019269680.1\|899546_901544_+\|excinuclease-ABC-subunit-UvrB	unknown	unknown	gnl\|CDD\|235395
NZ_CP041708.1\|WP_019269674.1\|890680_891232_-\|hypoxanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|223707
NZ_CP041708.1\|WP_036427839.1\|894128_894929_-\|TatD-family-hydrolase	unknown	unknown	gnl\|CDD\|238635
NZ_CP041708.1\|WP_019269682.1\|904385_905495_+\|dihydrofolate-synthase	unknown	unknown	gnl\|CDD\|223362
NZ_CP041708.1\|WP_019269675.1\|891254_892553_-\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|176464
NZ_CP041708.1\|WP_036427858.1\|885952_886615_+\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	unknown	unknown	gnl\|CDD\|234649
NZ_CP041708.1\|WP_019269684.1\|907231_908812_+\|diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|223754
NZ_CP041708.1\|WP_036427819.1\|909736_911167_+\|diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|376615
NZ_CP041708.1\|WP_165894312.1\|877840_878515_-\|deoxyribose-phosphate-aldolase	unknown	unknown	gnl\|CDD\|234784
NZ_CP041708.1\|WP_019269668.1\|878526_880209_-\|phospho-sugar-mutase	unknown	unknown	gnl\|CDD\|100092
NZ_CP041708.1\|WP_019269683.1\|905522_906197_+\|folate-family-ECF-transporter-S-component	unknown	unknown	gnl\|CDD\|275311
NZ_CP041708.1\|WP_036427828.1\|896838_898308_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274765

Protein	Function_ID	Function_description	E-value
NZ_CP041708.1\|WP_019269681.1\|901552_904393_+\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NZ_CP041708.1\|WP_019269679.1\|898310_899261_-\|DNA-polymerase-III-subunit-delta	gnl\|CDD\|224383	COG1466, HolA, DNA polymerase III, delta subunit [DNA replication, recombination, and repair].	5.13058e-22
NZ_CP041708.1\|WP_036427848.1\|880373_881687_+\|thymidine-phosphorylase	gnl\|CDD\|274244	TIGR02644, Thymidine_phosphorylase, pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff. [Purines, pyrimidines, nucleosides, and nucleotides, Other].	0
NZ_CP041708.1\|WP_029333391.1\|884547_885951_+\|magnesium-transporter	gnl\|CDD\|225148	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism].	6.55263e-79
NZ_CP041708.1\|WP_036427842.1\|892545_893844_-\|adenylosuccinate-synthase	gnl\|CDD\|234904	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional.	0
NZ_CP041708.1\|WP_019269685.1\|908795_909728_+\|thioredoxin-disulfide-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	3.60077e-126
NZ_CP041708.1\|WP_036427856.1\|887731_888466_-\|DUF285-domain-containing-protein	gnl\|CDD\|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	7.58124e-53
NZ_CP041708.1\|WP_019269687.1\|911178_912108_+\|DNA-binding-protein-WhiA	gnl\|CDD\|224398	COG1481, COG1481, Uncharacterized protein conserved in bacteria [Function unknown].	6.16137e-53
NZ_CP041708.1\|WP_019269680.1\|899546_901544_+\|excinuclease-ABC-subunit-UvrB	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_CP041708.1\|WP_019269674.1\|890680_891232_-\|hypoxanthine-phosphoribosyltransferase	gnl\|CDD\|223707	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism].	6.33877e-66
NZ_CP041708.1\|WP_036427839.1\|894128_894929_-\|TatD-family-hydrolase	gnl\|CDD\|238635	cd01310, TatD_DNAse, TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.	1.08645e-97
NZ_CP041708.1\|WP_019269682.1\|904385_905495_+\|dihydrofolate-synthase	gnl\|CDD\|223362	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism].	9.32674e-66
NZ_CP041708.1\|WP_019269675.1\|891254_892553_-\|adenylosuccinate-lyase	gnl\|CDD\|176464	cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase (ASL)_subgroup 1. This subgroup contains bacterial and archeal proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).	0
NZ_CP041708.1\|WP_036427858.1\|885952_886615_+\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	gnl\|CDD\|234649	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.	1.58008e-56
NZ_CP041708.1\|WP_019269684.1\|907231_908812_+\|diacylglyceryl-transferase	gnl\|CDD\|223754	COG0682, Lgt, Prolipoprotein diacylglyceryltransferase [Cell envelope biogenesis, outer membrane].	1.02667e-23
NZ_CP041708.1\|WP_036427819.1\|909736_911167_+\|diacylglyceryl-transferase	gnl\|CDD\|376615	pfam01790, LGT, Prolipoprotein diacylglyceryl transferase.	1.69938e-22
NZ_CP041708.1\|WP_165894312.1\|877840_878515_-\|deoxyribose-phosphate-aldolase	gnl\|CDD\|234784	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional.	3.50023e-125
NZ_CP041708.1\|WP_019269668.1\|878526_880209_-\|phospho-sugar-mutase	gnl\|CDD\|100092	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NZ_CP041708.1\|WP_019269683.1\|905522_906197_+\|folate-family-ECF-transporter-S-component	gnl\|CDD\|275311	TIGR04518, conserved_hypothetical_protein, ECF transporter S component, folate family. Members of this model are the multiple membrane-spanning S (specificity) component of ECF (energy coupling factor) type uptake transporters. All seed members were found in the vicinity of the bifunctional enzyme folC, involved in making active cofactor from imported folate. However, some species have multiple members of this family, suggesting some diversity of function. [Transport and binding proteins, Unknown substrate].	8.93282e-35
NZ_CP041708.1\|WP_036427828.1\|896838_898308_-\|hypothetical-protein	gnl\|CDD\|274765	TIGR03752, conj_TIGR03752, integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition. [Mobile and extrachromosomal element functions, Plasmid functions].	0.00297957

>NZ_CP041708.1|WP_036427839.1|894128_894929_-|TatD-family-hydrolase
MIDDNKIFDNHIHFNDDLKYKDANIEQLIKEAQKEHVTAWLCSSFDLTSSKKAIEFSEQFENVFASIAIHPNEVQNFNDSVFDELEQLITNKKVVCIGETGLDYFYSKEDIKKQKEFFKKHIELAIKYNKVLQMHIRDQKDQFQAYDDVIEIIKDLNQVIKVVHCFSANDVYAQKFLDLDCYINIGGAVTFKNAKDLQKAVKIIPLKKMLLETDAPYLAPDPYRGQVNHPKYIYLTALKIAELKNIDVKEVIRITTQNSKKIFNLN
>NZ_CP041708.1|WP_036427842.1|892545_893844_-|adenylosuccinate-synthase
MKNNYKSLVIVGSQWGDEGKGKITDYFSQKADAVVRFAGGDNAGHMIEFNNKRHKVTIIPSGVFNPKVKNIIGNGTVINLKSLVNEIKRLNESNISTDNVYISDRAHLIFDWHTLIDQLQEENRKENKIGTTKRGIGPSYADKAARYGIRICDLKSPNFKEIFKENLDYHNEIITKVYNHKPLDFDQVYNELLTNYQLIKNNIIDSGYEVSNLINENKFVLFEGAQGVLLDIDHGTYPFVTSSNCSANNASIGTGIHAKQIQKVIGIVKAYNTRVGSGAMPTEIKTELANKLRERGREYGSNTGKPRRIGWLDLVALKYAIRVGGIDQLFLTLFDVLDTEEKIKICTAYKLDNQIIHTIPANENDFKRCEPIYEELDGWNEDITKITSFEQLPINAQNYIKRIQEIVNVPFLGFSVGPDRKQTILIKGEFDD
>NZ_CP041708.1|WP_019269675.1|891254_892553_-|adenylosuccinate-lyase
MISRYQIKEINQIWSDENKYNTWLKVEQLVCQAWAKLGYINKQDILKINNNLKVDLNRMLEIEQETKHDVVAFTRMLSEQLDSESKWIHLGITSTDIVDTAQNYLIKQSNQIVDNELKNISDTLKKLAFEHKNTLIMGRTHGMYGEPTSLGLKFALWFDEFQRHIKRFSLAKSDIQVVKISGSMGNYANLEPIIEEYVANKLDMNVDSLSTQVCQRDRHIFLVEVLANIASTLEKISTEIRLLQRSDVNELAEGFFKNQKGSSSMPHKKNPISSENVAGLSRYIKSIVNIVLENNNLWHERDISHSSNERIYLPDIFNLIIYILKRMNETLTNLVINQSQMLNHIKQAKNIYFSQRVLTFILLNYKNVTREKIYDLIQQITFKCFKDQSDFKDEVLKSSLTEYVSIQQLEELFDDQFFLRHIDYIFNRVFNN
>NZ_CP041708.1|WP_019269674.1|890680_891232_-|hypoxanthine-phosphoribosyltransferase
MYDLKNVKKVLFTKEQINERIKQVAKEVKKYYLEQPPVNGPLITIGLLKGCVIFNTEFVLNFDYPIQMDFMAVSSYSGMQSTGAIKIKLDTSLDLTNRDVLIVEDMVDTGLTLSKVKEHIIYKGANSVKVVTLVDKKDFHTVDFTPDWNCFDIDDYYIVGYGFDCNEDYRNLPYIGLYQPDNN
>NZ_CP041708.1|WP_036427856.1|887731_888466_-|DUF285-domain-containing-protein
MSTLSCITIAGVVGGAVNYKIVNKVDKSKPPVLVKQLKKAVYNDDKTECLEIGYFKNSHGEIQIETFPKTVNKVPKNLPKQISSLSLAFHLNLNSQITNLDKWDTSNITNMSVMFAGAEKFNQDISKWNTSNVTNISGMFIWSNSFNQDLSSWDVSNVTNMHSMFYGANSFNQNLSSWDVSRVINMNGMFYGAKSFNQDLSNWDTRNLSKNVHTKNGITYTGWTNFNKDAHPDFKDNKLPRFPK
>NZ_CP041708.1|WP_036427858.1|885952_886615_+|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB
MRLRKKAWTEQFLNQHTSYLIKYGKKINLNEIFLNNNLTCLEIGCGKGQFLTTLALKNPNLNYIGMEKSSTITAIGLKKSLKEFQNNSKKMTNINYLNKYAENLLEIFYTDSFSRIYLNFSDPWPKARHYKKRLTYLGFLDIYSDILIKNGFLEFKTDNDSLYNFTLEQLKLTNKWETISNTLDLYNDQELLKDNVPTEYETKFHLANKNIYKIVIKNLK
>NZ_CP041708.1|WP_029333391.1|884547_885951_+|magnesium-transporter
MVDLENKEQEILEFYNNKEFDKCIEIIKKLRYADVGEILNYLDEKIAFNLYKKLEINKASQIFNYLSFDLKEYILTNLNQTKIKQLINDLYTDDIINAVESMPVEVVKRVFNAASKEQKKEIASILKYDIDTAGSIMSVNFLSVKQTTTVSKTIKEIQKNHDDYDEIDDVFVVNKLNQLVGSIEVKDLILNDMNTKIENIMNTKVISINSNQSQEDASNALKKYDISTLAVVDNNNVLVGIITSDDIIDVLIEETNEDMQKYTGIRTNETNYFDTSIFEMFISRIWSLVLMLGLTIITNSLLLIIFQKYNWTPAIKTKEELLFMLIPLSIILSTVIICCANQTLVMIRRAISLEQINKKSLKTIALKELVVSLMIAFVLIIVNLLKMILIYAIKYNANLTNINIWNSILISSAGIFISIIFANLLSLFLPLIVKKIGKDSSSVSLPLFALIIDILCVGVFLGIGLLV
>NZ_CP041708.1|WP_036427848.1|880373_881687_+|thymidine-phosphorylase
MFTFTDIIEKKKHNIELTQEEISWLINSYTKNEITDYQMASFCMATYFTDMTARETAFLTKAYIESGDRYDLSKISGFKADKHSTGGVGDKTSLVYAPLVASYGIKVCKLSGRGLGKTGGTVDKLESFPGWKSEVTNDEFVDVINKANMSLIAQSDNIVPADKKIYALRDVTGTIDSMPLIVASIMSKKLIVENDGLILDVKTGNGAFMTTIEDAKDLANRMIEVGKQYNRKVAVVLTNMNKPLGRAIGNAIEVKEAWETLNGNGPKDFNELISTLVGITLLQAKIFTDLATAKQDVLKRLQSKQAAPYLKEFVTAQGGDWSVLENYDEVFKCKNKIEIKAVNSGFIRYKRAEEFGMILIELGAGRFKKTDTIDRAAGIYLDKQYGDYVNTGDVIMTLYTNREVNLKWKEMVHETYELLDKEPVKEVIWEIISDDVK
>NZ_CP041708.1|WP_019269668.1|878526_880209_-|phospho-sugar-mutase
MSFNKLDKTYLSWVNHPNLDPELKDLLNKADDDELNAAFNLELKFGTAGIRGILGAGPGRFNVYTIKKVTIAYVKLLKSKYIDQLDKGVVIGHDNRHNSKKFAKLVADILTSFNIKAYLFKDNQLQPTPVVSFATKQLNCIGGIVITASHNPAEYNGYKIYDPYGCQLMPNDTDLIASEMNKISNILDWTFQANDNLLQVVDQIVIDKYFEMIKNLEFYKDNKASKPNLKIIYSAVNGTGSLYTPIVLKQSGYQIIEVKEHAFEDETFKNVINPNPEFDPAWKIPLEYAKKYDADIIILNDPDADRFSMAVKHNNEFIRLNGNQTGAILIDWKLSNLKCLNKLPKNPALYSSFVTSDLGDRIANETYNTTIIKTLTGFKWMGQEILKEVDNGLNFVFAYEESYGYVIDDSTRDKDGIQASIIAAEACWYYKNQNMTLVDYLNQLYEKYGYYFTTTYNLNFKPEEKDSKIAPIMKLLRSNGIKEINNLKVIKTEDYINGLYNMPSEDFLKFYLEDKSWFAIRPSGTEPKLKIYFVIVDSSLQKAENKAEKIYKELKAILNI
>NZ_CP041708.1|WP_165894312.1|877840_878515_-|deoxyribose-phosphate-aldolase
MEIKLNKYIDHTLLKPEATKQDIINLCNQAIQYDFATVCVNTCWTSFCKELLKNSNVGITNVVGFPLGACLTEVKVFEVKKAIENGCDEIDMVLNIGALKDKDYDLVLNDMKEVKKAANDHVVKVILENCLLTREEIIKACELAVQAGLEFVKTSTGFNKSGANIEDIKLMSKVVKNKAQVKAAGGVRTYEDAIEMINAGASRLGTSGSVEIMLKQENKSKLLI
>NZ_CP041708.1|WP_036427828.1|896838_898308_-|hypothetical-protein
MKELYLKLLNLSLNILKTNKLKYFILKNEEFKLKYLNLINDILTLETNHNQSLDDKVFAKTFAKAFILITKPTTKQRFEVNDDITIEQIENNYKQLVSYIVKEFKVVKSKLVSENEQISDEIINQNAILTDQVISRIEARLSKQEQSKEQKTSENFSKTTTVVTETQTQQEVENKQAQTSQQTDFLNSFNPNMFSNLNNADLPVLPSQDPRFHSYKGKPKFMPYLKIALCVLAVISTILLVSSLLFLSYTTIDISSSNYANIIESNKNWSDLIKVGDKELLKAWPIGISQIVLMFKRAFGLPILIYMIPTILICTYTKKTFSNPREKYRIPLFPVIFFIMFFIGLTVNLYEFTSLEKFKEAWKLFLSGMTSKTDIDINKFFELVLKDHALKFQLGSALVISSLIVTILTLLLAIVLIFVNPKIDRQKIVKATLEHQKAVMAIMQGQKYEIDPSLYEEDEIEIKHPSKLKSFFLKLKNKKKKENNKDKNN
>NZ_CP041708.1|WP_019269679.1|898310_899261_-|DNA-polymerase-III-subunit-delta
MYFFYSEDIFLLNNQIKKTIKELQQKDQYDVLSFSLIEDDFNTIYDNVTNLNFFSSKSIIVISDAYFVTEIKTNFNKNYSLNKLEIMLKNFNPNNIIIFGLNSNKFSKKLKIAKYIESNFNVKYLSLWDEKQTIKYIIDYLKSKNKIIDINLASQIYNLLPNDLQIITNEINKLANLKSELNIDIIKTNLNKYHNEDIFKLVDAFINNNIDKFIKLYHDYILLNDDIIGLISLIDTNLSFYRDIVILKKQFKSEEQISTILKSHIYRVKLAVNNSYDINTLNDKIKIVYKIYKGIINWNINKKTLVEYMLIKNMKG
>NZ_CP041708.1|WP_019269680.1|899546_901544_+|excinuclease-ABC-subunit-UvrB
MFIANNKYKLVTKYKPSGDQNQAIEKLNKGLIENKKHQVLLGATGTGKTFTIANIIAKHNKQALVIAHNKTLAMQLYYELKEMFPENRVEYFVSNFDFFQPEAYIPSKDLYIDKDSRQNMELDMMRLSACNALLTRNDTIVVASVAALFALQNPLEYSSAFIELKVGQKIKRNELLTWLVRSGYTRNDIENQLGSFSAKGDVVKIVPGWVNNIMFRISLFDDEIESIHTLNTITNSILDNITTVTIHPAQSYITPQDKLKTICNNIRNELVQRLAELQSENKLLEAQRLEQRTKYDLESLEEFGFCSGIENYSSHLDFRSKGQRPYVLLDYFNNDFITIIDESHITLPQIRGMYNTDRSRKLTLVEYGFRLPSALDNRPLNFDEFNSLIKQVIYTSATPGDYELDLVNHQVIQQIIRPTGLLDPQIEIRKTTNQIDDIINEIHLRKLQNERVFITTLTIRMSEDLTAFLQEKNIKVAYLHSELKTLECSEILNDLRKGVYDVVVGVNLLREGLDLPEVSLVCILDADKQGFLRNYRSLIQTIGRVARNVNGKAIMYADTVSQAMDEAIKETNRRRRIQEEFNKKHNITPKTISKAISESILSEQTKKTLAKAKKIKDKKQKLQTIQQTIDTLRQEMLQAAKELDFERAAILRDTIIELENEKNTN
>NZ_CP041708.1|WP_019269681.1|901552_904393_+|excinuclease-ABC-subunit-UvrA
MSTDKIIIKGAREHNLKNIDLELPKNKLIVFTGLSGSGKSSLVFSTIYQEGRRRYIESLSAYARQFLGGNEKPDVDSIEGLSPAISIDQKTTSHNPRSTVGTVTEIYDYLRLLYARIGQPYCINNHGQIKAVSIKEIVENIKQSTSDGEQIHILSPVIRDKKGTHIDILEKLRNDGFIRVIVDDQLRMLDDQINLEKNQRHNIDIVVDRIIYHNNDEINSRIFTAVEMGLKYSNNLIKIAFPNSNKQEKLFSTSFSCKVCDFVVPELEPRLFSFNAPLGACELCNGLGVSLEPDINLILPDLKLSINQGGVVYYKNFMHTKNIEWQKFRILCDYYYIDLNTPLKDLTQKQRDIILWGSDREIDIKIVTENNNKYEKYDFIEGNAALIKRRYFESKSEEARKWYSKFMSSKICKQCKGSRLNDIALSVKINEKSIFDYTNMSISEQLDFLLNIDLTPTQAMIAKLVLDEIISRTNFLNEVGLGYLNLSRTATTLSGGESQRIRLAKQIGSQLTGILYVLDEPSIGLHQKDNDKLIKTLKHLRDLGNTLIVVEHDEDAMKSSDWIVDIGPRAGEFGGEITFSGTYQDILKSDTITGRYLSRKEGIVVPKTRRGGNGKKIEIIGASENNLKNINVTIPLNKFITITGVSGSGKSTLLEDIVYKGIHNNLSKEYLPIGKVKEIKGIENINKAIYISQEPIGKTPRSNPATYTSVFDDIRDLFTNLPEAKIRGYKKGRFSFNVHGGRCEHCQGDGVITISMQFMPSVEVVCEICDGKRYNDETLTVKYKNKSIADVLNMSVSEAYVFFENIPQIKQKLETILEVGLGYIKLGQNATTLSGGESQRIKLSTYLLKKQTGNTMFLLDEPTTGLHVDDVKRLIGVLNKLVDLGNTVLCIEHNLDFIKVSDHIIDLGPDGGEYGGQVVVTGTPEQIIDHPTSYTAKYLKDYIVND
>NZ_CP041708.1|WP_019269682.1|904385_905495_+|dihydrofolate-synthase
MISIDQELFPIIQRLNREVVFDKVLDELNHPEKFLKVINVVGTNGKGSTSFYLSKGLLKKYQKVGLFISPAFLYQNERIQINNTPISDNDLKSYLHKIDYLIKKYQLHFFEIWTLIMILYFKDQKVDIVVCEAGIGGIRDTTSFLTNQLFSLCSSISYDHMDMLGNSIDEIIYNKVNIAKPNTKLFISHDNLKYKKIINKQIINKNVELIYTDLYEDKIIYQKANKGLVKKVLEELGIFDLDIFELEPPLGRFTTLQTFPNQIIIDGAHNVDGIKKLIQSVKSLNKEFIVLYASITTKEYLKSLELLDKNFKEVYICEFDYIKSWSIEHINHKNKIKDWKIFLKNNSKNIIICGSLYFIPLVYTFLKNN
>NZ_CP041708.1|WP_019269683.1|905522_906197_+|folate-family-ECF-transporter-S-component
MEFNSLSVYWITTAIFAVLLISMWVLGLWMEGFKLKTFTIKNITIIGTLVALSVILSYVVNRNFLQILGTRITLGYFVNFLIGMVFGPLAGILAGIATDLIGTMIVGAAQWHIGFVFAKSMLGFLGSLVFVFKNNKHWVWLMVWSYAIGLFLVIFVVHPISFATVGGPSLAVAYSLTKFIVYPIELVLYPLLTYTSIRVIYILVKKDLNSKNKQWILRNDAVIF
>NZ_CP041708.1|WP_019269684.1|907231_908812_+|diacylglyceryl-transferase
MSTTYFEWIKQHGDPSLARSFFQLIPAYPIFMFLGISSVIIASIICLKLKAIPLKEFEISIFIIVPFGIFGATIFGKVFLPFYQHSNTWYRIFFFWEPGMSLFGSLLFGILAGIAWFLKRSKTTMISLWVYADCIIPNILLGQVIGRWGNFYNHEILGQIVDYNSLYWLPESIRNNLFYFPNFVEFHHLNNPTDLLVNHYNWWDFNSNTWSEVQNFVNNNNQTIKDVLNQKITYHQPLFLYESIANLFLWLIVMFIINNLTRWINHPQPWELCPKAYPGWFNKQYKYLSEEQIINFNSIVPIKYKKITIDIENKQTVVLKLSFYQVWNKAFYYYEPDHKKVSQLESKIEEFNKIKNKDRLNFQNIKSNCKHQLDLINKKYRFKLDNLNKNSLEYQKIINLKSEEIKKNKELLMISKNNYYQKYGFWNLFFNINIFSKEIEKLNNPNQFKVIRSGVLTGCYILGYLIIRIILKTFRQNHELFIQNHRAINFIILSAILLSGIFIILLTQFISPYKWRQIGWLYERSY
>NZ_CP041708.1|WP_019269685.1|908795_909728_+|thioredoxin-disulfide-reductase
MKGLTNEIYDVIVVGSGPAGLTSAIYTARAGLKTVIYEQSAPGGKLIKTDLIENYPGFETIQGPDLASKMYLQALSLNASVEFVGVDSIFKNDDDIFEVSLANGETKKAYSVILATGTQENKLGIKGEDKLYGKGVSYCAVCDGAFYKNKPVAVVGGGYSAVQEAMYLSQLVDKVYLIVRRDVFRADANKVAKLKSQPNVEFLLKSQVKEIHGTEKVESLTINTPNGEKKLVVSAIFPYIGSTPLIDSVKHLCIENEKGYIPTNDKMQTEIKGLFVAGDVRDVPLRQIAIACGDGAIAGQMAVEYVQEVK
>NZ_CP041708.1|WP_036427819.1|909736_911167_+|diacylglyceryl-transferase
MESNLKLKIDKRVIIYTSLWIILSALIISLIVLSSKYFRIDWVQNRGFDTVLEYGNVKDVYLTKSNGTGGIRVYALTMTLGMIVAIGFSLYNFNKKDLSVSELAIGVIFIIPCSLFGASFFGKLNAEGIGRHANGSTFWGLFAFWEGGMAIHGGVYVGSIVGLLIFYIIGRKTKVSLLVYADCIIPNILLGQAIGRWGNFFNHEVLGTPVAKIANSIPSHSDKAIDQIFSTYLQTHSRPLFLPGFILKNCLSIYSGENQVINNISLENGNVVLLSPIFFYESIALLLGWFVIMFIIPNVWKLFIKPIDKNNNVYKIDHKFSFYQFFNPWLKSTETKLSSKDAWKKTLNENVYDNASQTYINLTNNIDSKDYLEKKLVKNYVLNKLNNKNNYPITKAGVQMFSYFLVWSIVRYVLEAQRPNDHLFIMHYKNFSLFVIGLSAIVGLIGMILSQHFLPSVFRKPGWLYEVEYFKVRKIN
>NZ_CP041708.1|WP_019269687.1|911178_912108_+|DNA-binding-protein-WhiA
MSFALEVKEEIVMHSFNEEQKLAYLSGFIRYSSDIIFSNNTSKIRFSTISNKIARTLLSFCRQLFDGQVEISIIQSQVLKKHKNFVLTLIGNINKFLQKLRIYDQNNQKIYVFKVKEEIKDKTSIIRAYIAGIFTAIGSVNSPKTSNYHLDLQFKTKIDAINFIELTNDLGFNFKLLERTSNRYVCYIKKSIMVSDFLKLIDAYNSVMQFENERISRDVYNSINRVNNFDISNQTKTLVTGKKQIEIINYLKQTNQFHLLSKKAQVLADLRLNFPDYSYNELVQEMQKMGYEITKSGISSLFKNIEKLS

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Crispr_ID: NZ_CP041708_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041708_5

979720-979821

Orphan

Consensus_repeat	Method
AATCAAAATATAAATAATTCAAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041708_5

>merge|NZ_CP041708|5|979720-979821|CRISPRCasFinder
AATCAAAATATAAATAATTCAAATCAAATTTCAAATACTAATAGTAATAGTTATAAAAATAAAACAACTAATACCAATAATCAAAATATAAATATTTCAAAT

>NZ_CP041708|5|5|979720-979821|CRISPRCasFinder
AATCAAAATATAAATAATTCAAAT	CAAATTTCAAATACTAATAGTAATAGTTATAAAAATAAAACAACTAATACCAAT
AATCAAAATATAAATATTTCAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041708.1\|WP_036428283.1\|978493_979078_-\|membrane-protein	unknown	unknown	gnl\|CDD\|275315
NZ_CP041708.1\|WP_019269722.1\|976249_977518_-\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
NZ_CP041708.1\|WP_036428287.1\|983682_984132_+\|peroxiredoxin	unknown	unknown	gnl\|CDD\|239315
NZ_CP041708.1\|WP_165890803.1\|975829_976144_-\|DUF1904-family-protein	unknown	unknown	gnl\|CDD\|370190
NZ_CP041708.1\|WP_019269719.1\|973348_974851_-\|lysine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234778
NZ_CP041708.1\|WP_036427759.1\|964432_966262_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|225212
NZ_CP041708.1\|WP_029333414.1\|989449_990430_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041708.1\|WP_019269740.1\|994897_995473_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041708.1\|WP_036428293.1\|988066_988516_+\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|379233
NZ_CP041708.1\|WP_036428295.1\|991283_992219_+\|1-phosphofructokinase-family-hexose-kinase	unknown	unknown	gnl\|CDD\|238570
NZ_CP041708.1\|WP_036428289.1\|984280_986371_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366776
NZ_CP041708.1\|WP_011387661.1\|972927_973236_+\|thioredoxin	unknown	unknown	gnl\|CDD\|239245
NZ_CP041708.1\|WP_036428279.1\|974853_975828_-\|tRNA-dihydrouridine-synthase-DusB	unknown	unknown	gnl\|CDD\|129820
NZ_CP041708.1\|WP_164538733.1\|980533_981031_+\|transglutaminase-domain-containing-protein	unknown	unknown	gnl\|CDD\|214673
NZ_CP041708.1\|WP_071646497.1\|981605_981788_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041708.1\|WP_036428281.1\|977598_978426_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225239
NZ_CP041708.1\|WP_019269738.1\|988563_989217_-\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|350157
NZ_CP041708.1\|WP_019269725.1\|979096_979387_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041708.1\|WP_019269737.1\|987107_988013_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|378820
NZ_CP041708.1\|WP_165890802.1\|972073_972916_+\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|319818

Protein	Function_ID	Function_description	E-value
NZ_CP041708.1\|WP_036428283.1\|978493_979078_-\|membrane-protein	gnl\|CDD\|275315	TIGR04522, EcfS_MSC_0063, putative energy coupling factor transporter S component, MSC_0063 family. This family of proteins is restricted to the Mollicutes (including Mycoplasma, Spiroplasma, and Ureaplasma). Members belong to a superfamily of multiple membrane-spanning proteins, among which those with assigned activities function as the S component (the specificity component) of ECF transporters. However, members fail to score better than the trusted cutoffs to previously built models for S component proteins (see pfam07155). [Transport and binding proteins, Unknown substrate].	1.85423e-39
NZ_CP041708.1\|WP_019269722.1\|976249_977518_-\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
NZ_CP041708.1\|WP_036428287.1\|983682_984132_+\|peroxiredoxin	gnl\|CDD\|239315	cd03017, PRX_BCP, Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), which functions as an alkyl-hydroperoxide reductase during post-diauxic growth.	8.23054e-42
NZ_CP041708.1\|WP_165890803.1\|975829_976144_-\|DUF1904-family-protein	gnl\|CDD\|370190	pfam08921, DUF1904, Domain of unknown function (DUF1904). This domain is found in a set of hypothetical bacterial proteins.	6.09392e-09
NZ_CP041708.1\|WP_019269719.1\|973348_974851_-\|lysine--tRNA-ligase	gnl\|CDD\|234778	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.	0
NZ_CP041708.1\|WP_036427759.1\|964432_966262_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|225212	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only].	1.37213e-33
NZ_CP041708.1\|WP_036428293.1\|988066_988516_+\|DNA-binding-protein	gnl\|CDD\|379233	pfam13518, HTH_28, Helix-turn-helix domain. This helix-turn-helix domain is often found in transposases and is likely to be DNA-binding.	0.000536294
NZ_CP041708.1\|WP_036428295.1\|991283_992219_+\|1-phosphofructokinase-family-hexose-kinase	gnl\|CDD\|238570	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.	2.06093e-110
NZ_CP041708.1\|WP_036428289.1\|984280_986371_+\|hypothetical-protein	gnl\|CDD\|366776	pfam01732, DUF31, Putative peptidase (DUF31). This domain has no known function. It is found in various hypothetical proteins and putative lipoproteins from mycoplasmas. It appears to be related to the superfamily of trypsin peptidases and so may have a peptidase function.	4.3182e-38
NZ_CP041708.1\|WP_011387661.1\|972927_973236_+\|thioredoxin	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	3.13913e-34
NZ_CP041708.1\|WP_036428279.1\|974853_975828_-\|tRNA-dihydrouridine-synthase-DusB	gnl\|CDD\|129820	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family. This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). This branch includes NifR3 itself, from Rhodobacter capsulatus. It excludes a broadly distributed but more sparsely populated subfamily that contains sll0926 from Synechocystis PCC6803, HI0634 from Haemophilus influenzae, and BB0225 from Borrelia burgdorferi. It also excludes a shorter and more distant archaeal subfamily.The function of nifR3, a member of this family, is unknown, but it is found in an operon with nitrogen-sensing two component regulators in Rhodobacter capsulatus.Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. [Unknown function, General].	2.47666e-125
NZ_CP041708.1\|WP_164538733.1\|980533_981031_+\|transglutaminase-domain-containing-protein	gnl\|CDD\|214673	smart00460, TGc, Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.	4.6272e-08
NZ_CP041708.1\|WP_036428281.1\|977598_978426_-\|hypothetical-protein	gnl\|CDD\|225239	COG2364, COG2364, Predicted membrane protein [Function unknown].	0.00569037
NZ_CP041708.1\|WP_019269738.1\|988563_989217_-\|purine-nucleoside-phosphorylase	gnl\|CDD\|350157	cd09006, PNP_EcPNPI-like, purine nucleoside phosphorylases similar to Escherichia coli PNP-I (DeoD) and Trichomonas vaginalis PNP. Escherichia coli purine nucleoside phosphorylase (PNP)-I (or DeoD) accepts both 6-oxo and 6-amino purine nucleosides as substrates. Trichomonas vaginalis PNP has broad substrate specificity, having phosphorolytic catalytic activity with adenosine, inosine, and guanosine (with adenosine as the preferred substrate). This subfamily belongs to the nucleoside phosphorylase-I (NP-I) family, whose members accept a range of purine nucleosides as well as the pyrimidine nucleoside uridine. The NP-1 family includes phosphorolytic nucleosidases, such as purine nucleoside phosphorylase (PNPs, EC. 2.4.2.1), uridine phosphorylase (UP, EC 2.4.2.3), and 5'-deoxy-5'-methylthioadenosine phosphorylase (MTAP, EC 2.4.2.28), and hydrolytic nucleosidases, such as AMP nucleosidase (AMN, EC 3.2.2.4), and 5'-methylthioadenosine/S-adenosylhomocysteine (MTA/SAH) nucleosidase (MTAN, EC 3.2.2.16). The NP-I family is distinct from nucleoside phosphorylase-II, which belongs to a different structural family.	9.19093e-81
NZ_CP041708.1\|WP_019269737.1\|987107_988013_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|378820	pfam12146, Hydrolase_4, Serine aminopeptidase, S33. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The majority of the members in this family carry the exopeptidase active-site residues of Ser-122, Asp-239 and His-269 as in UniProtKB:Q7ZWC2.	1.77881e-49
NZ_CP041708.1\|WP_165890802.1\|972073_972916_+\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|319818	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily. Escherichia coli Cof is involved in the hydrolysis of HMP-PP (4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate, an intermediate in thiamin biosynthesis), Cof also has phosphatase activity against the coenzymes pyridoxal phosphate (PLP) and FMN. Thermotoga maritima TM0651 acts as a phosphatase with a phosphorylated carbohydrate molecule as a possible substrate. Escherichia coli YbhA is also a member of this family and catalyzes the dephosphorylation of PLP, YbhA can also hydrolyze erythrose-4-phosphate and fructose-1,6-bis-phosphate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	4.72354e-45

>NZ_CP041708.1|WP_019269725.1|979096_979387_-|hypothetical-protein
MFRKIFKILISLVLAIIVILIGIIVLGFSQSQIDTNFLQRATKVLKETNTIDLLKLNVTTLGQKIGVLLVIYIGPLIFITGFIWNFFKLLFGVFKK
>NZ_CP041708.1|WP_036428283.1|978493_979078_-|membrane-protein
MSNIKIIINWISYFKSIKYIVLTAILSSLLTVIALTTSMIQIAETGLFQVADGLFLSLTFFIPGPMMFVVGCVYASIFDLVSGAAFYIPVSILIHILMFITIKLLVNKLPFYLNIMIAELFIFLYVLYAYIINYYSNANDISQANIKALVSFITDFIQYLVSVISAIFLYNVFDTKTFLNLFNSLNIDFFNKKH
>NZ_CP041708.1|WP_036428281.1|977598_978426_-|hypothetical-protein
MKEYFCNLKTNISKNKKQYLIRSFCLLVGLYIFSLSIALYVPTAVGASHVDFTNFSILTLFKDWAKGTDQKEIPGLVSPTNYKLALMSLYGFLLVVSVIFLTVSIIKEYKVTKNKKLWLQLIPLIVFDVLINVGLSYVIDGQILMLDKIGYLNWMFNSSTAYQFRTIFFLIAFILYIVGLTFWIHSGWLLGSYNSINTNFMRLTKLPFNVSRVLMDVLIIIPGVIMFLVNPISWDIKVKFLLNYVNIGTIGFLFLAGPLLAKSLGFINKITKVYQ
>NZ_CP041708.1|WP_019269722.1|976249_977518_-|serine--tRNA-ligase
MLDINYIEQNLDEVIQRLNKRNQQDYSDDLKYVVSKNLKRKEILVKSEALKSRKKQLSKEIGTLLKEKKVDQSEQAKIEVINLNEQIIKLDEELRVVNDQILEKLLYIPNLPHKDIYFGKSDEDNVEIRKSNHSNLLKHSTPHWQIATKLGLVDFEKGVKLSGSRFLIYTGLGSKLVRSIADLLLKRHEKHGYKEIFCPLIVNKSAMLGTGQLPKFSEDMYQVGEQYLIPTSEVPLTNLHANEILAYDVLPLKYTSFTQCFRQEAGNAGRDTKGMIRLHQFNKVELVKIVHPEESMNELEMLIKDAEDVLNMFDLPYRVVELCSGDIGFSSTKTYDLEVWFPEQNKYREISSCSNCTDFQARNMQTRFKDKDSKIKLVHTLNGSGVAVDRLIAAILENYWDGEKLILPTLLRPYFNNQEFIK
>NZ_CP041708.1|WP_165890803.1|975829_976144_-|DUF1904-family-protein
MPIIKFSGLEKDKVNQFSKNIEKIADLVKADPKNIFVIWENSEIFISESNVNPIYVTVQWMSRPDKEQLLADFIIDYFKNYSQKVWVFFTDVNSKLYAHGKKLG
>NZ_CP041708.1|WP_036428279.1|974853_975828_-|tRNA-dihydrouridine-synthase-DusB
MKIGNIQIEGKVVQGPMAGVSNEAFRIISKQHGASLVYAEMVSVAGMVHDNKKTFDMLNVNKVEHPISMQIFGNNVEEFITATKWIESNVDCDIIDLNLGCPAPKVAIRSQSGSALLKTPELIYEIVKNVVKNTTKPVTAKIRLGWDKNSVNAVKVAKLIQKAGASAIAVHARTRSDFYTGHADWEKIKEVKQAVSIPVIGNGDVIDAKSAKKMLDETGCDAVMISRACQGNPWIFEQINHYLKTGKELEKPNFDEWKTTVLKHLKLLVDLKTEPIAIKEFRKHLTWYLDVLNNKQLTKILKEKANKIETFKDVENIIKEYREE
>NZ_CP041708.1|WP_019269719.1|973348_974851_-|lysine--tRNA-ligase
MLDDRKFSEQELVRRNKYKNLVDQNKDPYKITNWKRNTTLLKLNEKYKDYSKEELLNLTQKLVIVAGRIKLYREAGKKAAFVNIDDQDSSIQLYVRLDEIGQEAFEDFRDLDLGDIIGVKGIMMRTDHGELSIRCKEVVLLSKALRPLPDKHAGIQDIEEKYRRRYVDLIMNHDVRKTFQARTKIIRKMQNFLDNRGYMEVETPILHSLKGGTSAKPFVTHYNVLNTDVYLRIATELHLKRLIVGGFEGVYEIGRIFRNEGMSTRHNPEFTSIELYVAYEDMFFLMDLTEEIFRVCNSAVNSSSVIEYNNVKIDLSEPFKRLHMVDGIKQVTGVDFWQEMTVEQALELAKKHNVYVEKHQESVGHIINLFYEEFVESTIIEPTFVYGHPKEISPLAKSNPNDPRFTDRFELFIIGREYANAFSELNDPIDQYERFKAQLEEESKGNDEANDMDIDFVEALEHAMPPTAGIGIGIDRLVMLLTNSDSIKDVLLFPQMKPKE
>NZ_CP041708.1|WP_011387661.1|972927_973236_+|thioredoxin
MADIIKITSKEQFDKEIKEGKVLVDFNATWCGPCKMLAPILHDFAKKVDGVKFLDVDVDLNRQVAEEFKIMSIPTLITFENGNQKNKHIGFATPDQLKNLID
>NZ_CP041708.1|WP_165890802.1|972073_972916_+|Cof-type-HAD-IIB-family-hydrolase
MNKKNIIIFSDLDGTLLYDDYIFSPKTIEVVEKLYKKGIYLIPITARTIKDLKQKANLLGIDKFKGIIVASNGAQIYDYKTDTLIFDQTLPKEFIKEIFNRYHNKFFAKLIFYSPNCCYVFAEGRNSKYWAHQVMGLKYISVDSPDQIDEPITHFYIVTNSKATPEENLNEYKYLMNHYSDDYKVDSYNNRVFDISVKGVDKGCGVNKVMQYLNLDETNTHSYGFGDGPNDFSLLKACTTGVAMKNGVIELKEIADDITDYSNDKDGVARYICDKILNVD
>NZ_CP041708.1|WP_036427759.1|964432_966262_-|MBL-fold-metallo-hydrolase
MFWFKHSNLSYLNNKTIISSVIDKKTNYAILQHKNIKFYINDYNNKFLLDQIIEISGVFNKLENNTSFYQFDFFNYLNKQFIDFEMINYKVEKISNGIRSNFILTNYFYTNKLASMFLFESIDRSTKFGELIKDLNLSFLIVISSYNIHFFTKFFYKLNTKFKWTTIITYLFYLIVFLLSYLTNFSYASLRIIIFFIISLYFKIIKKTTLLVFKRFLTLLICFVLTPSFLTSSSAVFIIVSFMFYYEKIFRNKFLDLCLKSLIFTFYFIPLQIFYFYSFSIVIQSLLIVLRPLFSFLYFSIFIWIWFDHNFLTNILIKIFEFIKKININFNIGYVNAIFLILAYLSILIIIKYNFKSIWSWISLIFILLLSYLISWLIKPSVFLVMLNVGNGNCFIFHDKFKNTTIINDCGVGKGFSKNIGYEFLKYFGINHVDLIIISHNHADHYNAIEAIRKNIKAYETITYNNFLPFKSIKNVNMYFFWNNLKNENDKSLVYLFEYRNIRILFTGDVEKEAEQLLVNNDYFKYVINLKPIDILQVPHHGSNTSSTDEFISLIKPKYGLISGNKRTYNFPRIGTLETLYKHNVKYFISQINGNTFYNFLTNSFWFKK
>NZ_CP041708.1|WP_164538733.1|980533_981031_+|transglutaminase-domain-containing-protein
MDELNIPSRIITGTARFGSLTGRGSRHAWNMIEIDGKWYHVDPTSDRVEKDQKQEYRFFLLHDDDYDDNTLFFRNDKEKLGSRFRNLKINKFVETKEDVLALIDKELEKNKKLTSLEVNVNPKNFKEVNKAFEERNIKLKEGQSFKDFGRVGWANYKKNSLLFRH
>NZ_CP041708.1|WP_071646497.1|981605_981788_+|hypothetical-protein
MITGVDNTMEYRLKEDQNWIPIKANKLVKRKRGIYQIRIKPNKTSLPSEIEVVNVINDMN
>NZ_CP041708.1|WP_036428287.1|983682_984132_+|peroxiredoxin
MKNYQLKDHKNNLVELNNLVGTKGLVLFFYPKAKTSLCTLEVIEYQKHLDPFKALGFNVVGVSQDEPNKNDEFCCEQNLSFLLLSDLNKDLVKEFNLTSETIILDNEPFVKYERSTFVLDNQLNLVKEFRNVDHIEHVNDLLEYFKKND
>NZ_CP041708.1|WP_036428289.1|984280_986371_+|hypothetical-protein
MNKINNKLKLFFLTSAVIFPSILTISCNSITNNKPTQQDQNTNNKDQNHQDNSNNSSNEQINDQTNHINETKLFNSHFIDINELQTLTPYQIHRKTKDYIESEKEFNNFLKTNNIDFTINENKEHNQKYWEFVSKLGEYGNIGDTKLNKTKFYNPNIPLSYSIKQQKLEQLKEEEIKDLTSKEFDFTNLIKNNPFGFLPSNLSQLFSYATFNSLEKLFNIKDITFLKSRHDDITGIFELLINTKNKKHYYKVTKQTNLFLKTNEDFFKYIHERGFQLEINVKQWVIERDEKTFEEIKRLNFANASGTAWIIDRVKNDDKDNYELLLATNIHVFNLRNTFDKSIFNNKLEDSKWKQFPVGFYDGKDTTSSEDNRKMAIYLKANRAEKIDNKNGLVESDVDKEKSIEAFEIYSQYLIAPYYIPRYGTDHIFFKDINKKSKYFDDNDYLSKTNNSGADFVTLRLKIQKNKLEKLLPSLAKVIEKDQEKDWYIKFKNSKFSPLQTQFYAGYPKHWNPFIRKTQFRGLKSEGGIISTQRKILEDIYFRDIWLKYNEQKNKEYNAINENYKKYERPFIDNEHGMNLTIADQFSTLYTNVPFGQIALKQGASGSMVIDSSFNVIGILNTEVEDTRASKYISIPLFEYQGQKISLPVRIQTNGVILFNSLSNDYLNKDNKEPKIIDDLIEKLKEDKLKTINLNP
>NZ_CP041708.1|WP_019269737.1|987107_988013_+|alpha/beta-fold-hydrolase
MKTEIISTKDNKKIVLYKWDEVIRPLAVIQLVHGSCEHLKRYEDFAKEMNQNNVIVVGIDQRGHGQTSVLNNELGYFNKTKGWECLIEDQLLVNQYIKTNYINLPIYMLGHSMGSFVARSYAIKYSDTIKGLILSGTNQTNSFVLISALFLTSLTSLFIKEKQPNKIIWNISYKTLNKKFKTNNANGVEWLTRDKNIQNQFLNDRLCGFVFSSSAFKDMFKGMLFNLKSKNLKKMDKNLRILLLTGSDEPVSHFSKDVVKFSNKLNKLDYSSQLIIYPNFRHEILNELDKNLVIRDILKFM
>NZ_CP041708.1|WP_036428293.1|988066_988516_+|DNA-binding-protein
MLPKDLDFKLQIIEEHKKSLASKYDIGIWTIRDWIHQYNMFAEQGISKSIVHTKYDPEFKPHVINHKKEYNLSYPETIKLFSIKNSSTVALWEKQFKEKGIKGLSNQIGRPKNNANSYKQLFLQLEEKIADLEQQIDELKQQLNIKDIK
>NZ_CP041708.1|WP_019269738.1|988563_989217_-|purine-nucleoside-phosphorylase
MHIDKNADIASVILIAGDPRRTKWACENLLTDYKLVSDVRNAFVYTGYYKNHKVSFATSGMGQPSIAIYVHELFNDHNVNTIIRVGTCGTYNNDIKIGTVIEAKNAFSEVNIFEPNKTGWQKNQPSLDLNIGLKANVHCSDVFYRLSKLDIKEHNLDVVDMESFALFYLANYFNKKAATILTVSDNLNDHSNDLTAKQREIATLKMYQDVLEKLFTN
>NZ_CP041708.1|WP_029333414.1|989449_990430_-|hypothetical-protein
MFYYATHSVLIQINKLDNKYLIGDQVFEQIPSYILNSLYTSANWNRALKYYCLKGNLVGYYMLNFDIYLDFQTKNISLLTRNSFFTNVINQIQFRTDFLQKVLNHKHRHRLVLDTSFDIDKDFIIKNNPTIFLDILRISSINRFFINKQIDLNKYKFKDIFVLSDKFEFVITNKNQRIYKIPKDQLSIDNKPVFIDLVNYKTYLTTTLNWYHQIVLELEYEDINNINNLKAQLIEIFKNNFTTDLNWHLYNLTLDEIYLASAIKEVFESNSFILSINVLEKTFKKLLINYFFIIFRSKNLINLLKTYIKTDQDTLVFNNLLNRYNK
>NZ_CP041708.1|WP_036428295.1|991283_992219_+|1-phosphofructokinase-family-hexose-kinase
MIYTITLNPAIDCVIETNQIDFNNTNYYSNGYSLIGGKGINVAIILNNLKNDVISTGFLGKNNANQFLDKFLELNLKNHFFLYNGVTRTNFKIKNLNTFDEIELNGVGCDLKLSYLNKLLKYLKDNLKEDDIVIASGSANKSFNDNVYQIIGDLVNKKQALFILDTSKKYLLEGLKAKPFLIKPNISELFAVFNEPISYEFDLIYKKIKQLQSLGARNILLSMASKGSYYFSESNDIYKIGVGQGKLVNSIGVGDSMLAGFVHGLNQQLDIIKTLKYAASCGSSTAFNKWLATKKEINKQLKNIEVKKIER
>NZ_CP041708.1|WP_019269740.1|994897_995473_+|hypothetical-protein
MNKFSNKYLSELNLEQRIELFSELLDSINASIKKAMLEFHPLPLEYQDLLFYAWLTLQEILNKSKTKKFRAELLLKVLEAIRSKCIEVCAKSIKNYYKKLNFSIATCSLSYKKPNKDTILDSKSSLAIQKIVNTYFENSNEKLAKQVFEMYENIFSQKEICAILDISKNKFNIIIKNTICDLQKTITLSLK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

127444 : 141450

Lactococcus_phage(25.0%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_036428414.1\|127444_129646_-	PTS transporter subunit EIIC	A0A2I7SAJ6	Vibrio_phage	4.7e-08	44.2
WP_036428416.1\|129695_129947_-	hypothetical protein	NA	NA	NA	NA
WP_019269125.1\|130051_130555_-	hypothetical protein	NA	NA	NA	NA
WP_019269126.1\|130554_131001_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	4.8e-21	39.2
WP_019269127.1\|131010_133125_-	ribonuclease R	Q0GXV6	Lactococcus_phage	4.6e-61	32.6
WP_013729883.1\|133160_133445_-	preprotein translocase subunit SecG	NA	NA	NA	NA
WP_019269128.1\|133698_134718_+	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A160DHK0	Gordonia_phage	8.0e-96	53.7
WP_019269129.1\|134727_135201_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	R4JF54	Bacillus_phage	3.0e-13	35.0
WP_019269130.1\|135187_137350_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	5.0e-164	44.4
WP_019269131.1\|137632_138667_+	ribose-phosphate diphosphokinase	A0A0K1YAT7	Cronobacter_phage	2.6e-17	28.1
WP_036428422.1\|138973_139534_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_019269133.1\|139676_140120_+	50S ribosomal protein L9	NA	NA	NA	NA
WP_019269134.1\|140121_141450_+	replicative DNA helicase	A0A1P8VVQ6	Streptococcus_phage	1.4e-71	38.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP041708

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection