CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP050021	Burkholderia thailandensis strain BPM chromosome 2, complete sequence	1 crisprs	csa3,cas3,DinG	0	0	1	0
NZ_CP050020	Burkholderia thailandensis strain BPM chromosome 1, complete sequence	3 crisprs	DinG,csa3,DEDDh,PrimPol,cas3,WYL	0	0	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP050021_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP050021_1

235319-235410

Orphan

Consensus_repeat	Method
CGCTTCCGCCTTGCGCGCGTCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP050021_1

>merge|NZ_CP050021|1|235319-235410|CRISPRCasFinder
CGCTTCCGCCTTGCGCGCGTCGCCGTCGTGCCTGCGGTGCCTGTCGTCGTCGGCCGTGCGCTTCGCGCCCGCTTCGGCCTTGCGCGCGTCGC

>NZ_CP050021|1|1|235319-235410|CRISPRCasFinder
CGCTTCCGCCTTGCGCGCGTCGC	CGTCGTGCCTGCGGTGCCTGTCGTCGTCGGCCGTGCGCTTCGCGCC
CGCTTCGGCCTTGCGCGCGTCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP050021.1\|WP_009907537.1\|225243_226875_-\|cytochrome-c-methylamine-utilization-protein	unknown	unknown	gnl\|CDD\|224771
NZ_CP050021.1\|WP_009896597.1\|238138_238297_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050021.1\|WP_009907544.1\|242204_243395_+\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NZ_CP050021.1\|WP_009896593.1\|233411_234032_+\|HAD-hydrolase-like-protein	unknown	unknown	gnl\|CDD\|319799
NZ_CP050021.1\|WP_009907539.1\|228568_229459_-\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|226145
NZ_CP050021.1\|WP_011401139.1\|223117_223330_-\|DUF3079-domain-containing-protein	unknown	unknown	gnl\|CDD\|337966
NZ_CP050021.1\|WP_009896595.1\|236244_236754_-\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|183009
NZ_CP050021.1\|WP_009896604.1\|243668_245699_-\|BCCT-family-transporter	unknown	unknown	gnl\|CDD\|376718
NZ_CP050021.1\|WP_009896599.1\|238616_238970_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050021.1\|WP_009896600.1\|239057_239699_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050021.1\|WP_009907543.1\|236946_237963_+\|1-aminocyclopropane-1-carboxylate-deaminase	unknown	unknown	gnl\|CDD\|183494
NZ_CP050021.1\|WP_009896586.1\|223634_223907_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050021.1\|WP_009899924.1\|230867_231593_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099
NZ_CP050021.1\|WP_127446362.1\|241383_241665_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050021.1\|WP_011401150.1\|239876_241268_-\|alkaline-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|293737
NZ_CP050021.1\|WP_009907540.1\|229510_230818_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_CP050021.1\|WP_009907538.1\|226871_228350_-\|ser/threonine-protein-phosphatase	unknown	unknown	gnl\|CDD\|277318
NZ_CP050021.1\|WP_009896587.1\|224220_225081_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|377216
NZ_CP050021.1\|WP_009896602.1\|241689_242031_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050021.1\|WP_025370244.1\|231793_233056_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877

Protein	Function_ID	Function_description	E-value
NZ_CP050021.1\|WP_009907537.1\|225243_226875_-\|cytochrome-c-methylamine-utilization-protein	gnl\|CDD\|224771	COG1858, MauG, Cytochrome c peroxidase [Inorganic ion transport and metabolism].	3.50892e-82
NZ_CP050021.1\|WP_009907544.1\|242204_243395_+\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	1.37834e-55
NZ_CP050021.1\|WP_009896593.1\|233411_234032_+\|HAD-hydrolase-like-protein	gnl\|CDD\|319799	cd04303, HAD_PGPase, phosphoglycolate phosphatase, similar to Synechococcus elongates phosphoglycolate phosphatase PGP/CbbZ. Phosphoglycolate phosphatase catalyzes the dephosphorylation of phosphoglycolate; its activity requires divalent cations, especially Mg++. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.36094e-67
NZ_CP050021.1\|WP_009907539.1\|228568_229459_-\|amidohydrolase-family-protein	gnl\|CDD\|226145	COG3618, COG3618, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only].	1.26079e-68
NZ_CP050021.1\|WP_011401139.1\|223117_223330_-\|DUF3079-domain-containing-protein	gnl\|CDD\|337966	pfam11278, DUF3079, Protein of unknown function (DUF3079). This family of proteins with unknown function appears to be restricted to Proteobacteria.	1.88329e-34
NZ_CP050021.1\|WP_009896595.1\|236244_236754_-\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	6.18054e-47
NZ_CP050021.1\|WP_009896604.1\|243668_245699_-\|BCCT-family-transporter	gnl\|CDD\|376718	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter.	0
NZ_CP050021.1\|WP_009907543.1\|236946_237963_+\|1-aminocyclopropane-1-carboxylate-deaminase	gnl\|CDD\|183494	PRK12390, PRK12390, 1-aminocyclopropane-1-carboxylate deaminase; Provisional.	0
NZ_CP050021.1\|WP_009899924.1\|230867_231593_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	3.20406e-58
NZ_CP050021.1\|WP_011401150.1\|239876_241268_-\|alkaline-phosphatase-family-protein	gnl\|CDD\|293737	cd16013, AcpA, acid phosphatase A. Acid phosphatase A catalyzes the hydrolysis reaction via a phosphoseryl intermediate to produce inorganic phosphate and the corresponding alcohol, optimally at low pH. AcpA hydrolyzes a variety of substrates, including p-nitrophenylphosphate (pNPP), p-nitrophenylphosphorylcholine (pNPPC), peptides containing phosphotyrosine, inositol phosphates, AMP, ATP, fructose 1,6-bisphosphate, glucose and fructose 6-phosphates, NADP, and ribose 5-phosphate. AcpA is distinct from histidine ACPs and purple ACPs, as well as class A, B, and C bacterial nonspecific ACPs.	2.05264e-98
NZ_CP050021.1\|WP_009907540.1\|229510_230818_-\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.02595e-132
NZ_CP050021.1\|WP_009907538.1\|226871_228350_-\|ser/threonine-protein-phosphatase	gnl\|CDD\|277318	cd00839, MPP_PAPs, purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	2.71205e-09
NZ_CP050021.1\|WP_009896587.1\|224220_225081_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|377216	pfam04072, LCM, Leucine carboxyl methyltransferase. Family of leucine carboxyl methyltransferases EC:2.1.1.-. This family may need divides a the full alignment contains a significantly shorter mouse sequence.	4.81736e-51
NZ_CP050021.1\|WP_025370244.1\|231793_233056_+\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.27954e-73

>NZ_CP050021.1|WP_009896593.1|233411_234032_+|HAD-hydrolase-like-protein
MAYKLIAFDFDGTLADSLACFLLALSESARQHGFRAIDGALLPQVRGMSAHEIVKLLGVPPWKVPLIAADMRRRMHARASDVRLFAGIDATLRALAQRGTRIAIATSNSEAVVRAIAGPATCAHIRHFSCGISLFGKARRLRALAHASGFACADVLYVGDEVRDAQAADRAGIAFRGVAWGYTAPDALQAHCRMPLIERPEELLAL
>NZ_CP050021.1|WP_025370244.1|231793_233056_+|MFS-transporter
MTKIARRLMPLLVIMFLIAFIDRQNVGFAKLQMVHALGMTETSYGLGASLFFIGYLLFEVPSTLALHRFGARLWLARIMMTWGVITVLLGFTHSTSVFYVFRFLLGVAEAGFYPGVIYYLTLWFPQSHRTRVLGLFTLGSALANMLGSLAGGLLLSLDGRLGLAGWQWVFVATGLPAVAVAFVALRYLPESVERATFLADDEKRVVLAALKREASPEAVSESPWRALVDPRVLMFALAYMLMSTSLYGVTYWLPTLLKSSGVPASLNGLLNMIPWAIAALLLLWLPARLKRERLVLKAMAIVAGVGVAGFALSLALPGLPLCFAALVLGGACIPLLYPCFWSLPPRFFSGARAAASIAAINSIGNLGGFFAQNLMPYVGKAAGSTSAPMLVPVVCLAALGVGMLAAASVAGRRRAAGMAA
>NZ_CP050021.1|WP_009899924.1|230867_231593_-|GntR-family-transcriptional-regulator
MHATDDRLPRYQRLRDELAALIAARHWRPGEAIPTEQALAKRYDVAIGTVRKAVDLLVADGMLERFQGRGTFVRRASFDSSLFRFFRFQSKHGERRIPESRILRREVVEATSAVAAALQIPARAPVIEMTRVRLIDGAPMLAEEIWLPYDRFAAFSRLELDSIGDLLYPVYEAHCNQIVASATETLTVEAIGPVHARLLRIEPGTPAVVIERLAYGYDRRPLEWRRSRGPASEFIYQAEIR
>NZ_CP050021.1|WP_009907540.1|229510_230818_-|MFS-transporter
MFEWFATVSLRERRTFWACFGGWALDALDMQMFSLVIPAIVAEWSLSRTQAGFVGGATLVASAIGGWVAGMLSDRFGRVRTLQWTIACFAVGTFACAFATSYPQFVVLKALQGAGFGGEWAAGAVLMAETIRAEHRGKAMGAVQSAWALGWAAAVLLYALAFSLMPAALAWRAMFAIGLLPALLIVYVRRGIVEPSVSASSPSNTPAAARASVPLVGIFSRDTRRMTLIGALLGVGAHGGYYALMTWLPTYLKVERHLSVLGTGGYLAVIIVAFFCGCIASAQLLDRIGRRGTILAFAACCIATVIAYLFLPLGNAAMLVLGFPLGFFAAGIPASMGALFNELYPRGTRGTGVGFCYNFGRVASAGFPVLVGHMSADMPLGTAIGIDAAIAYSIVVVAVLLLPETRARALDDLAGAHATADARADRIGAPGARPR
>NZ_CP050021.1|WP_009907539.1|228568_229459_-|amidohydrolase-family-protein
MSGQEWSACAHAAAMRRAASDITAIDAHAHVFETGLPLAGRRRYAPDYDAPLDAYLAQLDAHRVSHGVLVQPSFLGSDCRYLLRALAQQPRRLRGVAVIDAGCEPHVLDTLDRAGVVGIRLNLIGMPDPALDGPAWRATLERIAALRWHVELHAQAQRLGRLIAPLLAHRVNVVVDHFGRPNPACGIADAGFRDLLRTAATRRVWVKVSGVYRNWPLAPGEANARAQEAFDALAAEFGAERLVWGSDWPHTQFERTETFGRAFALARQWMRDDAMRRAIFVETPARLFRFGELHGA
>NZ_CP050021.1|WP_009907538.1|226871_228350_-|ser/threonine-protein-phosphatase
MPRPILRRAAALLPTLASAALLQACTSSIDNQPDAASASANIQAAWVEIGDANQAIARVITSYAPPAAAPGEAAPAVCPQLNADGKIARMTLRAAAGTAAQRPTASDPADSKPSGFPVSVCEATVPANAKDVTVAGRALPLPKAEPQRVAIIADTGCRMKKADNAFQACSDATVWPFATIAASVAKLNPDLVLHVGDYHYRENACPPDIAGCKNSPWGYGWDAWRADLFEPAAPLLAKAPWVVVRGNHEECARAGQGWFRFLDPRPYSDARSCNDPANDGNANYSEPYAVPLGTGSQVIVFDTAKVGRAALKTTDVQFQIYQKQFQTVAALANKPGMSTTIFTNHHPILAFAPIPGSTPAPGNLALQSVMSSLYAQAYYPPGVQIALHGHVHDFQAINFASGHPATIVSGNGGDNLDVALPDPFPANLTPAPGVVIDKLSHNNSFGFLIMERRAAPARGWTFKAYTAAGKLLASCDQAGTTLTCDKTGFVAP
>NZ_CP050021.1|WP_009907537.1|225243_226875_-|cytochrome-c-methylamine-utilization-protein
MTGRRRSSAARRAVPAAALTARASVTAFALGPAALGTTRTRRTVLTLSTIVRAACGALAACASAIALASGPAAPDATHSTHAARPASAASSTSPMNPTSTPGASGPAHAKAALDAARAKAAPPSPPTTVLLPGAPPERVVDTIGRGTPQVASKVDPTAAVFRPDPTLAALGKRVFFDPALSEPRGMSCASCHDPGRAFAPTLSPAALAGPRVPQGSRPGHFSRRNAPSLLYVRYVPRRHFYQDDDALAPAPFGGLFSDGRADTLAEQLRGPLFDPDEMNNASAAALMRKIGRTGLGAALAGRFGPSVRRDPERMVRVLGEAMQAYLQSDEMAPFSSRYDAYVTKRAPLTPQEMRGLALFRNPDKGNCMSCHTLSDTASRPERSLFTDFGYDAIAVPRNRALPANRDPRHFDNGLCDTAAKLRWPEPTQWCAYLRTPGLRNVAIKESFMHNGVFDTLRDAVAFYNTRSTDPARWYHGRDTFDDVPRAYRGNVNVNSTPMNRRPGTPPAMTDADVDDLVAFLRTLTDARYVGLMPAAPDGKAARP
>NZ_CP050021.1|WP_009896587.1|224220_225081_-|class-I-SAM-dependent-methyltransferase
MSNQSIAAPDSTAVRVALWRALHVEIDAPPHVLDDGIGLELAAPDDDWRSRPDMAPQATRGYRASIVGRARFVEDLIGEQAERGVAQYVVLGAGLDTFAQRRAKLASHLRVFEIDQPGTQAWKRQRLIALGYGVPEWLRLVPVDFEASGAWRAQLSAAGFDDSRPAVVSSTGVSMYLTRDAIAGTLRRIATLAPGSTLAMTFLLPLELIDDPAERAQHAAVYERARAAGTPFVSFFSPAEMLALAREAGFREVRHVSTDDLVRRYFEGRPDGLRPSSGEAFLVAST
>NZ_CP050021.1|WP_009896586.1|223634_223907_-|hypothetical-protein
MEHLVRIVNDTDRQILAWLRNQVGDERVERAAQHMGRVRKPYLSAVCRYLGVWPPISLRYQTRRAEVDHAVGDRYLTLIRQHLATHAASR
>NZ_CP050021.1|WP_011401139.1|223117_223330_-|DUF3079-domain-containing-protein
MAKKFPLHPKHPERNCWGCDRYCSVDALSCGNGSDRTQHPVELLGDDWYEWEQENEAAQKQMQQTQAAAR
>NZ_CP050021.1|WP_009896595.1|236244_236754_-|winged-helix-turn-helix-transcriptional-regulator
MCATKKSAPKAAAQPAGADIDRVDRAILRMLQRDASISNVALAAKVNLSAPACLRRVERLKEMGLIRGIVALLEPKALNAGMLVMIGVVLDRSTPDSFGAFEQAAQKVSGCMECHVVTGEFDYIMLIRTRDSDTFNRLHAEQLLYLPGVRQIRTFVVLKEILSTTSFPI
>NZ_CP050021.1|WP_009907543.1|236946_237963_+|1-aminocyclopropane-1-carboxylate-deaminase
MNLQKFPRYPLTFGPTPIQPLKRLSAHLGGKVELYAKRDDCNSGLAFGGNKTRKLEYLIPDALAQGCDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYHDAVYDRVGNIQMSRMMGADVRLVPDGFDIGFRKSWEDALADVRARGGKPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAELGFKFDYVVVCSVTGSTQAGMVVGFAADGRADRVIGIDASAKPAQTREQILRIARNTADRVELGRDIASGDVVLDERFGGPEYGLPNEGTLEAIRLCAKLEGVLTDPVYEGKSMHGMIEKVRLGEFPAGSKVLYAHLGGVPALNAYSFLFRDG
>NZ_CP050021.1|WP_009896597.1|238138_238297_+|hypothetical-protein
MVSNNIVALHNFEIACDAISISGEVTVRSRQARGALAGRPMPIAGWMRARSN
>NZ_CP050021.1|WP_009896599.1|238616_238970_+|hypothetical-protein
MGFVGGERRRARIAESNEIDGATLITKVASEPLAALGGARSEATPPLTLYGAYRQGFADYLAGRPNPYRIGSRLAGIWHEGHAEAASNDALDFTARARTCGGARTAANPVAFFRRRR
>NZ_CP050021.1|WP_009896600.1|239057_239699_-|hypothetical-protein
MKIRSGLVAELTVNLLLPWAAYRAAAPHWGETGGLIASAVPPLAWSVIELARFRRIDALSAVVLFGIVLSIAAALAGGSPRMLLMRESLASGAIGVAFLGSLALRKPLVFHLARATIAREAHDGAARIDALWAERPAFVSAMRLMTLVWGSGLVAENLLRAWMVWNWPVERVLVVAPFVGYGIYGALMLWTLWYRKVMRAHALAGLPRGGALG
>NZ_CP050021.1|WP_011401150.1|239876_241268_-|alkaline-phosphatase-family-protein
MAKILENVEHIVVVMFENRSFDTMLGWLYPPGTQPAHVLPARGSPQFDGLKPDMSNPSRAGKTIAVTREATNNVIPDPQETFVNVTSQILGPGGAGNPWPPMQGFVVNYETTRTSDPGHVMQCHSVAQLPTLTALARAYAVSDAWFASVPSQTWPNRAFAHAGTSNGHVNNGAIPDPLEWDVPTIFDVLSSIGASWAVYSDTAVTPSLTHTMFPSLWNDKYADNFERFPDFVAACKNDALPRYAFVEPSFLFEPNDQHPPHDVLAGDKFLHDIWTAISTSPGWPRTLLVVTYDEHGGCFDHVLPPANATPPDAASNPGDETFEFDRFGVRVPAVVVSPYIEAGTVFRSPTNVPYDHTSILATLRDWLAIAPDKMLKSARIANAPTLAQLFTRSVPRGDLPAIAAPSADFVQPPPSAPLNDLQKSLVTGTSRRDGNDPAASVAPIATRQHALDFFTRRATAKPT
>NZ_CP050021.1|WP_127446362.1|241383_241665_-|hypothetical-protein
MTTEPARASGGARSFTHRADRAAIRRHRQRHLRHQRGYRRNESVFMGGGANSAPGDEFAAMIETAPARAHPPARRVAGTPAAPPCFSRNIGYT
>NZ_CP050021.1|WP_009896602.1|241689_242031_-|hypothetical-protein
MIAPATPAALAAGATTFAEWAALGTLALLYLFGLGWSLRGALARSRGRAYWLACAALIAGGTACALLAKPSAPNSGEMPPGFGLGVLVVMLGIAGTTAGCAWQAIARLRHGQR
>NZ_CP050021.1|WP_009907544.1|242204_243395_+|serine-hydrolase
MNLESVTPATAAAAATDHAALAGRLDRVFATALAERRVVGAVALVARGGELVYRRAHGFAERETQRPMREDTLFRLSSITKPIVTVAVLRLVAAGRMALDAPITRWLPEFAPALPDGRAPALTVHQLLTHTAGLSYWLLEAPGSAYHTLGISDGIDLVDFDLAENLRRIAAAPLAFEPGSAWRYSLALDVLGAAIERETGLALPDAVAQLVTTPLGLRDTGFVAADPARFAAAYANAAPQPVRITDNLDVPLPEGHGVAVRFAPSRVFDATAFASGGAGMYGSADDVLRVLETIRTGGDGFLPAALAAAMRTDHTGPAAETRGPGWGFGYGGAVLSDPARAQSPQSAGTLQWGGVYGHSWFVDAARGLTVLLMTNTAYEGMSGPLTVEVRDAVYAV
>NZ_CP050021.1|WP_009896604.1|243668_245699_-|BCCT-family-transporter
MPSSRSAPRTTLKPQVVVPSLAVIGALLAVCALLPNEAGALFGAGQQWIVERFDWFYVLAITTFLIFIVLIAASRFGNIKLGPDDAEPEFSFVSWTAMLFAAGMGIGLMYFGVGEPIQHYLKPPTALGGTPAAAREAMLMSFFHWGLHAWATYGVMGLVLAYFGFRYNLPLTLRSGLYPVLREGVNGWIGHTVDAFALVGTVAGIAVTLGYGVLQLSAGLHTIAGWQTDSDAFRIGLVAVVVALAGLSAASGLDKGVRRLSELNLMLAFALLAFVVVAGPTSFLLRAFGDNVGEYLSKLVSLSFRTYAYEAPNDKGWFGGWTLLYWAWWVSWSPFVGMFIARISRGRTIREFVIGVLLVPTAFNLVWMTAFGNSAIWLDTHAAAGALAQTATNVDALLFRFFDYLPLTQLLSVAAIVLIAVFFVTSADSGAFVIDAIATRGAPHSPVWQRLFWAAVLGVTASVLLVAGGLKALQALTLVAALPVALVMLALCYGLWRGLKADHAHYSQEMAPATSFWTGQHWRQRLSQILRHTTGADARRFIAQTVEPALRKVAEELKAGGVDAHVARDDDDAVRLTVPAPAQRDFVYGARVSRKSAPAFRIREAAEPEPQREHVCEVLTFFADGRLGYDIEYLRGDEIIADVLRQYERYVSLASDTRTHLLNRAPEHAGPDGLTQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1675544 : 1686956

Stx2-converting_phage(37.5%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025370137.1\|1675544_1676762_+	acyltransferase	A0A2H4IZR3	uncultured_Caudovirales_phage	2.1e-26	25.9
WP_009891862.1\|1677011_1678271_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.5e-43	44.4
WP_165981566.1\|1678361_1679524_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	1.6e-84	53.2
WP_009888727.1\|1679974_1680382_+\|transposase	transposase	A0A0P0ZBP6	Stx2-converting_phage	3.1e-14	38.2
WP_009889515.1\|1680378_1680726_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.1e-40	72.0
WP_009889500.1\|1680755_1682327_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	6.7e-150	53.8
WP_165981704.1\|1682373_1683102_+	site-specific DNA-methyltransferase	A0A2N9QVT4	Dishui_lake_phycodnavirus	9.3e-14	25.7
WP_165981705.1\|1683136_1683661_+	hypothetical protein	NA	NA	NA	NA
WP_165981706.1\|1683757_1684297_-	hypothetical protein	NA	NA	NA	NA
WP_165981707.1\|1684431_1685016_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_165981708.1\|1685066_1685603_-	hypothetical protein	NA	NA	NA	NA
WP_009891862.1\|1685696_1686956_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.5e-43	44.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP050020

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP050020_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP050020_1

662115-662206

Orphan

Consensus_repeat	Method
TGTCGCTCGATGCGCTCGAGCGGCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP050020_1

>merge|NZ_CP050020|1|662115-662206|CRISPRCasFinder
TGTCGCTCGATGCGCTCGAGCGGCTCGTCGGCGTGAATCTCGCGCGGCTGCGCGCGGAACGCCAGCTGTCGCTCGATGCGCTCGCGCGGCTC

>NZ_CP050020|1|1|662115-662206|CRISPRCasFinder
TGTCGCTCGATGCGCTCGAGCGGCTC	GTCGGCGTGAATCTCGCGCGGCTGCGCGCGGAACGCCAGC
TGTCGCTCGATGCGCTCGCGCGGCTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP050020.1\|WP_009892883.1\|660738_661911_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP050020.1\|WP_009892876.1\|667459_668992_-\|glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|237027
NZ_CP050020.1\|WP_009892877.1\|665851_667354_-\|glycerol-kinase-GlpK	unknown	unknown	gnl\|CDD\|234594
NZ_CP050020.1\|WP_009892880.1\|663905_664592_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|319828
NZ_CP050020.1\|WP_009892886.1\|657985_659359_-\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	unknown	unknown	gnl\|CDD\|237673
NZ_CP050020.1\|WP_009892878.1\|665021_665738_-\|aquaporin-family-protein	unknown	unknown	gnl\|CDD\|223653
NZ_CP050020.1\|WP_009892881.1\|663112_663835_+\|3,4-dihydroxy-2-butanone-4-phosphate-synthase	unknown	unknown	gnl\|CDD\|235119
NZ_CP050020.1\|WP_025404068.1\|671132_672797_+\|gamma-glutamyltransferase-family-protein	unknown	unknown	gnl\|CDD\|223482
NZ_CP050020.1\|WP_025369597.1\|659660_660593_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP050020.1\|WP_009902991.1\|655506_656304_-\|rRNA-maturation-RNase-YbeY	unknown	unknown	gnl\|CDD\|237573
NZ_CP050020.1\|WP_009892898.1\|648331_650431_-\|glycine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234925
NZ_CP050020.1\|WP_009892864.1\|670114_670894_-\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NZ_CP050020.1\|WP_009892887.1\|656885_657962_-\|PhoH-family-protein	unknown	unknown	gnl\|CDD\|376820
NZ_CP050020.1\|WP_009892862.1\|673102_673936_+\|ferritin-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|153097
NZ_CP050020.1\|WP_161654082.1\|651750_653466_-\|apolipoprotein-N-acyltransferase	unknown	unknown	gnl\|CDD\|234721
NZ_CP050020.1\|WP_009892892.1\|653507_654395_-\|HlyC/CorC-family-transporter	unknown	unknown	gnl\|CDD\|226910
NZ_CP050020.1\|WP_009908481.1\|654835_655468_-\|gamma-glutamylcyclotransferase	unknown	unknown	gnl\|CDD\|226226
NZ_CP050020.1\|WP_009892896.1\|650447_651455_-\|glycine--tRNA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|236473
NZ_CP050020.1\|WP_009892870.1\|669159_669531_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050020.1\|WP_004189182.1\|669597_669795_-\|phage-tail-assembly-chaperone	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP050020.1\|WP_009892883.1\|660738_661911_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	3.20259e-99
NZ_CP050020.1\|WP_009892876.1\|667459_668992_-\|glycerol-3-phosphate-dehydrogenase	gnl\|CDD\|237027	PRK12266, glpD, glycerol-3-phosphate dehydrogenase; Reviewed.	0
NZ_CP050020.1\|WP_009892877.1\|665851_667354_-\|glycerol-kinase-GlpK	gnl\|CDD\|234594	PRK00047, glpK, glycerol kinase GlpK.	0
NZ_CP050020.1\|WP_009892880.1\|663905_664592_-\|HAD-family-hydrolase	gnl\|CDD\|319828	cd07526, HAD_BPGM_like, subfamily of beta-phosphoglucomutase-like family, similar to Escherichia coli 6-phosphogluconate phosphatase YieH. This subfamily includes Escherichia coli YieH/HAD3 an 6-phosphogluconate phosphatase, which can hydrolyzed purines and pyrimidines as secondary substrates. It belongs to the beta-phosphoglucomutase-like family whose other members include Lactococcus lactis beta-PGM, a mutase which catalyzes the interconversion of beta-D-glucose 1-phosphate (G1P) and D-glucose 6-phosphate (G6P), Saccharomyces cerevisiae phosphatases GPP1 and GPP2 that dephosphorylate DL-glycerol-3-phosphate, and DOG1 and DOG2 that dephosphorylate 2-deoxyglucose-6-phosphate. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	5.5562e-48
NZ_CP050020.1\|WP_009892886.1\|657985_659359_-\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	gnl\|CDD\|237673	PRK14325, PRK14325, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional.	0
NZ_CP050020.1\|WP_009892878.1\|665021_665738_-\|aquaporin-family-protein	gnl\|CDD\|223653	COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism].	1.57915e-71
NZ_CP050020.1\|WP_009892881.1\|663112_663835_+\|3,4-dihydroxy-2-butanone-4-phosphate-synthase	gnl\|CDD\|235119	PRK03353, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional.	3.44814e-122
NZ_CP050020.1\|WP_025404068.1\|671132_672797_+\|gamma-glutamyltransferase-family-protein	gnl\|CDD\|223482	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism].	0
NZ_CP050020.1\|WP_025369597.1\|659660_660593_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.8477e-70
NZ_CP050020.1\|WP_009902991.1\|655506_656304_-\|rRNA-maturation-RNase-YbeY	gnl\|CDD\|237573	PRK13963, PRK13963, rRNA maturation RNase YbeY.	2.1871e-153
NZ_CP050020.1\|WP_009892898.1\|648331_650431_-\|glycine--tRNA-ligase-subunit-beta	gnl\|CDD\|234925	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated.	0
NZ_CP050020.1\|WP_009892864.1\|670114_670894_-\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	3.83635e-99
NZ_CP050020.1\|WP_009892887.1\|656885_657962_-\|PhoH-family-protein	gnl\|CDD\|376820	pfam02562, PhoH, PhoH-like protein. PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation.	2.73217e-140
NZ_CP050020.1\|WP_009892862.1\|673102_673936_+\|ferritin-like-domain-containing-protein	gnl\|CDD\|153097	cd00657, Ferritin_like, Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyubiquinone hydroxylases (DMQH), DNA protecting proteins (DPS), and ubiquinol oxidases (AOX), and the aerobic cyclase system, Fe-containing subunit (ACSF).	1.52061e-10
NZ_CP050020.1\|WP_161654082.1\|651750_653466_-\|apolipoprotein-N-acyltransferase	gnl\|CDD\|234721	PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed.	0
NZ_CP050020.1\|WP_009892892.1\|653507_654395_-\|HlyC/CorC-family-transporter	gnl\|CDD\|226910	COG4535, CorC, Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism].	9.20756e-141
NZ_CP050020.1\|WP_009908481.1\|654835_655468_-\|gamma-glutamylcyclotransferase	gnl\|CDD\|226226	COG3703, ChaC, Uncharacterized protein involved in cation transport [Inorganic ion transport and metabolism].	1.02846e-57
NZ_CP050020.1\|WP_009892896.1\|650447_651455_-\|glycine--tRNA-ligase-subunit-alpha	gnl\|CDD\|236473	PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated.	0

>NZ_CP050020.1|WP_009892883.1|660738_661911_+|MFS-transporter
MPLPLLALAISAFAIGTTEFVIMGLLPDVARDLAVTLPSAGLLVSGYALGVAAGAPLLAVLTSRMPRKAALQLLMAIFIAGNVLCALAQSYGMLMFARVVTSFAHGSFFGIGAVVAASLVSVDKRASAIALMFTGLTLANVLGVPFGTFVGQTLGWRATFWIVAALGVASLAGVAALVPKPRDAGRAALGRELRVLKEPQVWLALAMTVLGFGGVFVVFTYIAPILEDVTGFSPHAVSLVLVLFGVGLTIGNAIGGRLADRALMPSLLAILVALIAVMAVFAKTSHLPAAAAITVFVWGIAAFATVPPLQSRVVEKAAHAPNLASTLNIGAFNVGNAGGAWLGGVALSHGAPLDALPWVAAVVTLAALAVTVLAARLDTRVSPGAAAAAQ
>NZ_CP050020.1|WP_025369597.1|659660_660593_-|LysR-family-transcriptional-regulator
MDRLGDIRLFVDAAELGSLSAAGRKLNLTPAAASARLAKLEAQVSTRLFERSTRRLRLTDEGRLYLNCCRQALQALDDADAMLQEGRNVVSGKVRLSSTADFGRNQLLDWLDEFNARYPDVTFSVTASDSSSNLWQDEIDLAIRFAAPPDGALIARPLAANRRVLCASPAFVDKYGTPKDPHDLARFPCNVITVASGPINVWRFTRGGDTQTYTVPLANAHETNDGGFTREWTIRGHGIALKSIWDVARDVRAGRLKVLLPEWRHQDAPLHAIHHSKRYMAPRVRVLLDFLVERFAQEEKALEDLLNACR
>NZ_CP050020.1|WP_009892886.1|657985_659359_-|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB
MTKKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDSPEDADIILFNTCSVREKAQEKVFSDLGRVRELKEAKPDLLIGVGGCVASQEGASIVARAPYVDLVFGPQTLHRLPQMIDARRESGRAQVDITFPEIEKFDHLPPARVEGPSAFVSIMEGCSKYCSYCVVPYTRGDEVSRPLDDVLTEIAGLADQGVREVTLLGQNVNAYRGALTAGAHEIADFATLIEYVADIPGIERIRYTTSHPKEFTQRLLDVYAKVPKLVDHLHLPVQHGSDRILMAMKRGYTVLEYKSLIRKLRAIRPNLSLSTDIIVGFPGETEADFDKTMALVHEMSYDTSFSFIYSPRPGTPAANLADDTPREVKLERLQHLQATIEENVARISQSMLGKVERILVEGPSRKDPNELAGRTENNRVVNFPAPLTAHARLIGQMIDVKINHAYPHSLRGELVLAHDDASAATH
>NZ_CP050020.1|WP_009892887.1|656885_657962_-|PhoH-family-protein
MKTAQALEFTAPRDDNARLANLCGPLDENLRQIEQALDVTLSRRGHRIAIRGRGARIALAALEDFYNRARDPLSVDDIQLALVEARHPGNPRRNGNGNGDGSGQPEVDVRFRGDPDHPFDEPVVRIGDEPHADEAAPKLYTRRADLRGRTPAQREYLKQILSHDVTFGVGPAGTGKTYLAVACAVDALERDQVKRIVLTRPAVEAGERLGFLPGDLAQKVDPYLRPLYDALYDLLGFDKTAKMFERQMIEIAPLAYMRGRTLNHAFIILDEAQNTTPEQMKMFLTRIGFGSKAVVTGDTSQVDLPRGHKSGLVEAQQVLGGVRGIALTRFTSADVVRHPLVARIVEAYDEFHAQHKDE
>NZ_CP050020.1|WP_009902991.1|655506_656304_-|rRNA-maturation-RNase-YbeY
MKSSRSSKSARAEAAQPEFPRLSLFDAKGKVKTVEAQALRVDFADGRSLMFDLSGSSGDAAVAIVAQHTDPSLRATIALRPEHYDSVTVEAGADENPDFAHDATDDAGEDAPDREPELDLAVQYGDEIGDAQRRSLPKRKVIAEWLEPAIFSDAQFTVRFVGADEGRTLNHSYRHKDYATNVLTFAYGEEPDGVTVADLVLCCPVVEKEAREQGKTLVAHYAHLLVHGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPYR
>NZ_CP050020.1|WP_009908481.1|654835_655468_-|gamma-glutamylcyclotransferase
MSRPAPARCPYPPSLGEARYLSDDELAASLDATLAGWDRTSDLWLFGYGSLIWNPGMPAVEALRGKVHGYHRGLYLWSRVNRGTPEQPGLVLALDRGGSCTGLAFRLAGGTAIPHLEALWRREMAMGSYRPAWLPCALAGGERVSALAFVMRRDVPTYTGKLTDDVVKAVFGCASGRYGTTLDYVSRTVAALRDSGMPDRALEALLARCR
>NZ_CP050020.1|WP_009892892.1|653507_654395_-|HlyC/CorC-family-transporter
MNDSYPSRKSSDKPHEKRSLLERLTDFISPEPDSRAELLEILQDAHERNLIDADSLSMIEGVFQVSDLCARDIMVPRAQMDALNIADKPEDFIPFVLEKAHSRYPVYEDNRDNVIGVLLAKDLLRFYAEEEFDVRGMLRPAVFIPESKRLNVLLHDFRVNRNHLAIVVDEYGGVAGLITIEDVLEQIVGDIEDEYDFDEEAGNIIAAPDGRYRVRALTEIEQFNETFGTDFSDEEVDTIGGLITHHFGRVPHRGEKVRLGDLLFEIQRGDARQIHVLLVRRAPLAGRRSGSAGED
>NZ_CP050020.1|WP_161654082.1|651750_653466_-|apolipoprotein-N-acyltransferase
MAEPISTRSQSSVSPTAAGRALPIWHYPSALLAGAANTLTFAPTPHGGWLQLAVFAWLFAQLTRTTSWKHAAATGGAFGFGNFISGIWWLYISMHVYGEMAAPLAGGALVLFCLYLSIYPAFSAGLWSFCAGHARNGKAADPRPFSPTWHGAFAFASAWAVGEWLRGTVLTGFPWLASGYAQVDGPLAGYASIVGVYGIGWVLALVAALGVQAIARAREGSNGLGGDRNNGGGNGRTDAPAGAVPLALRSPRVAAPALTAAALVALGPLLALVPWTVPANAPLTVRLLQGNVKQDIKFEEAGIQAAIAMYQKMITEKPADLVVTPETAIAVLIQELPEPFARAVRNFSDATDTAVLFGAVGGTVTNDGRIVDYTNSLYGVTPHSRDIYRYDKHHLVPFGEFIPWGFHWFVDLMKMPLGDFARGAPVQQPFIVRNQPVMADVCYEDIFGEEIAATIRDNPVSPGVLVNVTNLAWFGDTIALDQHLQIARMRSLETGRPMLRATNTGMTAAIDAHGRVIGRLKPFTIGSLDVRIEGTAGRTPYVTSGNATVLAMSLLLLAFGFAFGPRLRRRS
>NZ_CP050020.1|WP_009892896.1|650447_651455_-|glycine--tRNA-ligase-subunit-alpha
MLTFQQIILTLQSYWDRQGCALLQPIDMEVGAGTSHVHTFLRAIGPEPWRAAYVQPSRRPKDGRYGENPNRLQHYYQYQVVLKPAPENILDLYLGSLAALGFDLKQNDVRFVEDDWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLDCKPVLGEITYGLERLAMYLQKVENVYDLIWTEWEEQGPNGPEIRRLTYGDVYHQNEVEQSTYNFEQANVELLFTFFNSYEAEAKRMIEAQLALPAYELVLKAGHTFNLLDARGAISVTERAAYIGRIRALSRLVAQAYYDSREKLGFPMIGNPVPGVPGLTTDAQEAAQPAWAPPLKAERKIDQD
>NZ_CP050020.1|WP_009892898.1|648331_650431_-|glycine--tRNA-ligase-subunit-beta
MTQNHSASLLVELLTEELPPKALARLSDAFAEGIAQRLAARDLIEGELAFERYATPRRLAVVVQNVRAVAPERQVREKVLPVSVALDAQGKPTAPLAKKLAALGHPNLSIADLERAHDGKAEAFFVNYASPGATLAEGLQAALDETLAKLPIPKVMTYQRPDGTDVQFVRPVHRLSALHDDRIVPVCAFGIDAGDTTLGHRFLSDGLVAIQHANAYADTLRDKGRVLAHFAGRKEAIRAQLEANAGGDQVVMPEALLDEVTSLVEWPVVYPCRFEDEFLQVPQECLILTMQTNQKYFALTDAAGKLRSRFLIVSNIETKTPDEIVEGNERVVRPRLADAKFFFEQDKKKPLADRVPLLANVVYHNKLGSQLARIERLETLAGEIAPAIGADATVAIRAARLAKADLLTDMVGEFPELQGTMGTYYARHDGEAEDVAIACSEHYQPRFSGDALPTTPVSTAVALADKLETIVGIWGIGLAPTGEKDPFALRRHALGVLRLLLEKQLPLDLVWLLRTTYERFAAVPDVAESTDAIHAFFVERLRGLLRERGYTAGEVDAVLSLNPTRLDDIVARLDAVREFTRLAEAEALAAANKRISNILKKSESGANGAVQPALFVEAAEKALAEQLAEVTPRVQSQLEARAYTGALSALAALRAPVDAFFDGVMVNAEDPALRANRLALLSALHQQMNCVADISKLAA
>NZ_CP050020.1|WP_009892881.1|663112_663835_+|3,4-dihydroxy-2-butanone-4-phosphate-synthase
MSFPLPSKSAPADAFSDLPLLDVEPVPPRIAAALAALREGRAVVLQDDHDRENEADLIVAAERLTDETMALLIRECSGIVCLCLTDEKVRALALPPMAQLNESKNGTAFTVSIEARAGVTTGVSAADRVTTIRAAIADDAQPHDIVRPGHVFPLRAAPGGVLARRGHTEGTVDLAILAGLKPAGVLCELMNPDGTMTRGADVERFAAQHGLPMLTIAELVEFRERLASLRERDACCEGVA
>NZ_CP050020.1|WP_009892880.1|663905_664592_-|HAD-family-hydrolase
MLDHLICDCDGVLVDSEVIADRVLFDTLSAAFPAIDFTADAKAAFGQQTSRFLADLEARHGIAMPEDFLDTIEHNIETGLAQWLAPIAGVRDALTKIALPAAVVSNSRLARVRNSLKRAALTDVFGERVFSAEQVARPKPYPDVYLHAARTLGVEPARCIVVEDSVSGLNAARAAGMKTIAFVGASHIPGGYEDALRKMGIMRIMRSMDELPALVSAGMRGEFGDVQS
>NZ_CP050020.1|WP_009892878.1|665021_665738_-|aquaporin-family-protein
MSPYIAEFIGTALLVLLGNGAVANVLLAKTKGKGADLIVIVMGWAMAVFVAVYVTASFSGAHLNPIVTISLALAGKFAWAKVGGYIAAQMLGGMAGALLVWLAYRQHFAKETDPDLKLAVFCTAPAIRSVTHNVLTEAICTFVLILGVLYLASPQVGLGALDALPVGLLVLGIGISLGGPTGYAMSPARDLSPRIMHALLPIPGKRDSDWRYAWVPVLGPLVGGVLAANLYLYLHTAH
>NZ_CP050020.1|WP_009892877.1|665851_667354_-|glycerol-kinase-GlpK
MQDQYILALDQGTTSSRAMLFDRQGNIVSIAQKEFEQIYPRPGWVEHDPQEIWSTQAGVAAEAVTRVGLNGTSIAAIGITNQRETTIVWDRETGHPIYNAIVWQDRRTADFCDQLKAQGLSEKVRAKTGLPIDSYFSATKIRWILDNVEGAREKARQGKLAFGTVDSWLVWNFTKHELHVTDVTNASRTMLFNIHTLDWDDELLDALEIPRSMLPQVRASSEIYGPTKTTVFASKIPLAGIAGDQQAALFGQMCTSSGMVKNTYGTGCFLMMNTGETPIESQNNLVTTIAWQVDGKVNYALEGSIFIAGAVVQWLRDGLGIIKSASEIEALAAGVPHTDGVYLVPAFAGLGAPHWNARARGSLFGVTRGTTSAHLARAALDSIAYQSLDVLKAMEADSGIRIGELRVDGGASANNLLMQFQADLLGVDAVRPRVTETTALGAAYLAGLAIGYWKNVDELHSQWQLERRFAPSMQREQVSSCLCGWQRAVRAAKAWADDTQ
>NZ_CP050020.1|WP_009892876.1|667459_668992_-|glycerol-3-phosphate-dehydrogenase
MTQQNRYDLLVVGGGINGAGIARDAAGRGLSVLLCEQDDLASHTSSSSTKLIHGGLRYLEYKEFGLVRKALQERETLLRAAPHIIWPLRFVMPHMPNLRPAWLIRIGLFLYDHLAKRELLPGSRGIDMRRHPAGAPLVDSIKRGFVYSDGWVDDARLVVLNALDAQERGARILTRTKLVSAERRDGQWHARLQRADGSTLDVCARAVANAAGPWVGDVLHGALGRGAQHSVRLVKGSHIVTRRLFDHDHAYIFQNPDKRIIFAIPYERDFTLIGTTDVEYRDDPSRVAIDRDETRYLCESINRYFKRKISPADVCWTYSGVRPLLEDENADNPSAVTRDYRLELDGGDGAPLLSVFGGKITTFRKLAEEATDMLGGALGASRGAWTAGVPLPGGDIADARFAPFAEAFAKRHPWLPAALARRYARAYGTRAERVIGGAKSLAELGAELAPGLYEAELRYLRDAEWASCADDVLWRRSKLGLHVAPGTLDAVTAALDAWFGAAREAASAAH
>NZ_CP050020.1|WP_009892870.1|669159_669531_+|hypothetical-protein
MRTMIAAGALALLAGCAGGPAMFGGWGGPSFADLQRSCGDVRDYGEDAQAVYSAVFDAWVAKRHGKLTDARFCAFENELAQHRAALGTSTDPAERGRWVSYLNDARARALSWRAAVDPSLRGG
>NZ_CP050020.1|WP_004189182.1|669597_669795_-|phage-tail-assembly-chaperone
MLSPHEFATLLLVKDAPDQADMDRDELDALLERQLVKLEALGSGRKYCVTEIGDAALRSIKLRYS
>NZ_CP050020.1|WP_009892864.1|670114_670894_-|DeoR/GlpR-transcriptional-regulator
MTRDPRLTLNARQQELLEWVQRDGFVTVDDLAAHFNVTPQTIRRDVNWLADLNLLRRYHGGASLPTSSENVSYTARQRMFHDEKRRIAALAASHIPDQASLFINLGTTTEEVARALNRHRGLRVITNNLNVASMMSGYPECEVLITGGIVRPWDKGIVGELAIDFIRQFRVDYAIIGTSSIESDGTLRDFDTREVRVAEAIIQHARTVYLVTDHSKFGRPALVRQGHLNQIHALFTDKPLPDEMAETIAQAGTQVYVAD
>NZ_CP050020.1|WP_025404068.1|671132_672797_+|gamma-glutamyltransferase-family-protein
MTLHSNISGVPFSWRNPYLTTRVPVFARNVVSTSHPLAAQAGLRMLWKGGNAVDAAIAAAAAITVVEPVSCGLGGDAFALVWDGAKLHGLNASGVAPAAWSVDYFRRRHGDAGNGLARQPTRGWDTVTVPGVIAGWEALHAKFGSLPFADLLEPAIELAERGHAVAAVVAHKWAAAVPELNGQPGFAETFMPRGRAPEVSELVRLPGHAKTLRTIAAEGARAFYEGSIAESIAGFFRDGGGALTADDLRAYRPEWVEPIGKDFRGYTVHEIPPNGQGIAALIALGIVERFGLDDLPLDSAEAQHVQIEAMKLAFADVYRYVADPRAMALTPAQMLDDAYLDARAKLIDVTRATHFSFGMPRAGGTIYLSAADERGMMVSFIQSNYMGFGSGLVVPGMGIALQNRGCGFSMDPTSPNVVEGGKRPFHTIIPAFVTQQAGGARHAVMSFGVMGGDMQPQGHLQTIVRMLGYGQQPQAACDAPRWKVSRSFTLDVEAALGASVVDALAARGHTIQAIDDPYMDFGSGQFIWRLDRDEPDRGYVAASDSRRDGLAAGF
>NZ_CP050020.1|WP_009892862.1|673102_673936_+|ferritin-like-domain-containing-protein
MLADSDTTHEMPWRIEDIDLTRIDRQRAAANEDLLLLLCAASFIESGSDLYTSNLSQFFDDDPEVSAWLNTEWEHEELQHGRALKAYIAHVWPEFDWDLAFADFFDEYSKTCSLEAFEKTRALEMVARCVVETGTATLYRAINECSDEPVLKEITDNIRTDEVRHYKHFFRYFKKYNKVEGNGRLAVLGALMRRVLEIRNEDSEIALRHVFAIRYPDRAGDSAYCRERTARVNALVRRNLSADMCVKMLLKPLDLPAKIQPGVHYPLTKLTQHVFFR

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Crispr_ID: NZ_CP050020_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP050020_2

2185619-2185734

Orphan

Consensus_repeat	Method
CATGCGCGCCGCCGCGCACGCGCTTCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP050020_2

>merge|NZ_CP050020|2|2185619-2185734|CRISPRCasFinder
CAACGGCGGCGGCGCACATGCGCGCCGCCGCGCACGCGCTTCGCTCCCCCGCATCGCCCCCCCCGCTTCGCCACCGCATTGACCGCCGCATGCGCGCCGCCGCGCACGCACTTCGC

>NZ_CP050020|2|2|2185619-2185734|CRISPRCasFinder
CAACGGCGGCGGCGCACATGCGCGCCGC	CGCGCACGCGCTTCGCTCCCCCGCATCGCCCCCCCCGCTTCGCCACCGCATTGACCGCCG
CATGCGCGCCGCCGCGCACGCACTTCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP050020.1\|WP_009890512.1\|2187788_2188127_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050020.1\|WP_011402249.1\|2192769_2194260_-\|NCS1-family-nucleobase:cation-symporter-1	unknown	unknown	gnl\|CDD\|271404
NZ_CP050020.1\|WP_009890502.1\|2194415_2195111_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP050020.1\|WP_004192898.1\|2179419_2179851_+\|large-conductance-mechanosensitive-channel-protein-MscL	unknown	unknown	gnl\|CDD\|237569
NZ_CP050020.1\|WP_009890516.1\|2186370_2187573_+\|membrane-protein	unknown	unknown	gnl\|CDD\|368779
NZ_CP050020.1\|WP_009890543.1\|2178030_2179236_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP050020.1\|WP_011402255.1\|2174197_2176720_-\|penicillin-binding-protein-1A	unknown	unknown	gnl\|CDD\|227342
NZ_CP050020.1\|WP_009890522.1\|2181842_2182052_+\|dodecin-domain-containing-protein	unknown	unknown	gnl\|CDD\|377810
NZ_CP050020.1\|WP_009890518.1\|2185967_2186321_+\|hydroxyisourate-hydrolase	unknown	unknown	gnl\|CDD\|225226
NZ_CP050020.1\|WP_009890510.1\|2188513_2189026_-\|ureidoglycolate-lyase	unknown	unknown	gnl\|CDD\|179606
NZ_CP050020.1\|WP_009890521.1\|2182803_2183733_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176152
NZ_CP050020.1\|WP_038707963.1\|2190275_2190797_-\|2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline-decarboxylase	unknown	unknown	gnl\|CDD\|225736
NZ_CP050020.1\|WP_011402254.1\|2180176_2180665_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050020.1\|WP_038712608.1\|2180815_2181754_-\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224995
NZ_CP050020.1\|WP_009890520.1\|2183922_2185335_-\|8-oxoguanine-deaminase	unknown	unknown	gnl\|CDD\|236184
NZ_CP050020.1\|WP_009890507.1\|2190796_2191750_-\|allantoinase-PuuE	unknown	unknown	gnl\|CDD\|211797
NZ_CP050020.1\|WP_165981594.1\|2189022_2190036_-\|allantoicase	unknown	unknown	gnl\|CDD\|237319
NZ_CP050020.1\|WP_038712601.1\|2191895_2192759_-\|aspartate/glutamate-racemase-family-protein	unknown	unknown	gnl\|CDD\|226611
NZ_CP050020.1\|WP_127462262.1\|2182106_2182748_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050020.1\|WP_004521233.1\|2177236_2177917_+\|PspA/IM30-family-protein	unknown	unknown	gnl\|CDD\|224755

Protein	Function_ID	Function_description	E-value
NZ_CP050020.1\|WP_009890502.1\|2194415_2195111_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	1.67953e-47
NZ_CP050020.1\|WP_004192898.1\|2179419_2179851_+\|large-conductance-mechanosensitive-channel-protein-MscL	gnl\|CDD\|237569	PRK13952, mscL, large conductance mechanosensitive channel protein MscL.	2.50619e-80
NZ_CP050020.1\|WP_009890516.1\|2186370_2187573_+\|membrane-protein	gnl\|CDD\|368779	pfam06181, Urate_ox_N, Urate oxidase N-terminal. Cytochrome c urate oxidase (Uox) PuuD is involved in purine degradation. In contrast with soluble Uox it is a membrane protein with an 8-helix transmembrane N-terminal domain and a C-terminal cytochrome c.	0
NZ_CP050020.1\|WP_009890543.1\|2178030_2179236_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.23436e-06
NZ_CP050020.1\|WP_011402255.1\|2174197_2176720_-\|penicillin-binding-protein-1A	gnl\|CDD\|227342	COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane].	0
NZ_CP050020.1\|WP_009890522.1\|2181842_2182052_+\|dodecin-domain-containing-protein	gnl\|CDD\|377810	pfam07311, Dodecin, Dodecin. Dodecin is a flavin-binding protein,found in several bacteria and few archaea and represents a stand-alone version of the SHS2 domain. It most closely resembles the SHS2 domains of FtsA and Rpb7p, and represents a single domain small-molecule binding form.	1.01699e-32
NZ_CP050020.1\|WP_009890518.1\|2185967_2186321_+\|hydroxyisourate-hydrolase	gnl\|CDD\|225226	COG2351, COG2351, Transthyretin-like protein [General function prediction only].	3.76465e-65
NZ_CP050020.1\|WP_009890510.1\|2188513_2189026_-\|ureidoglycolate-lyase	gnl\|CDD\|179606	PRK03606, PRK03606, ureidoglycolate lyase.	4.0966e-102
NZ_CP050020.1\|WP_009890521.1\|2182803_2183733_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176152	cd08463, PBP2_DntR_like_4, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold. This CD includes an uncharacterized LysR-type transcriptional regulator similar to DntR, NahR, and LinR, which are involved in the degradation of aromatic compounds. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.40332e-127
NZ_CP050020.1\|WP_038707963.1\|2190275_2190797_-\|2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline-decarboxylase	gnl\|CDD\|225736	COG3195, COG3195, Uncharacterized protein conserved in bacteria [Function unknown].	3.08249e-76
NZ_CP050020.1\|WP_009890507.1\|2190796_2191750_-\|allantoinase-PuuE	gnl\|CDD\|211797	TIGR03212, uraD_N-term-dom, putative urate catabolism protein. This model represents a protein that is predominantly found just upstream of the UraD protein (OHCU decarboxylase) and in a number of instances as a N-terminal fusion with it. UraD itself catalyzes the last step in the catabolism of urate to allantoate. The function of this protein is presently unknown. It shows homology with the pfam01522 polysaccharide deacetylase domain family.	0
NZ_CP050020.1\|WP_011402249.1\|2192769_2194260_-\|NCS1-family-nucleobase:cation-symporter-1	gnl\|CDD\|271404	cd11555, SLC-NCS1sbd_u1, uncharacterized nucleobase-cation-symport-1 (NCS1) transporter subfamily; solute-binding domain. NCS1s are essential components of salvage pathways for nucleobases and related metabolites; their known substrates include allantoin, uracil, thiamine, and nicotinamide riboside. NCS1s belong to a superfamily which also contains the solute carrier 5 family sodium/glucose transporters (SLC5s), and solute carrier 6 family neurotransmitter transporters (SLC6s).	0
NZ_CP050020.1\|WP_009890520.1\|2183922_2185335_-\|8-oxoguanine-deaminase	gnl\|CDD\|236184	PRK08203, PRK08203, hydroxydechloroatrazine ethylaminohydrolase; Reviewed.	0
NZ_CP050020.1\|WP_165981594.1\|2189022_2190036_-\|allantoicase	gnl\|CDD\|237319	PRK13257, PRK13257, allantoicase; Provisional.	0
NZ_CP050020.1\|WP_038712601.1\|2191895_2192759_-\|aspartate/glutamate-racemase-family-protein	gnl\|CDD\|226611	COG4126, COG4126, Hydantoin racemase [Amino acid transport and metabolism].	4.13185e-80
NZ_CP050020.1\|WP_038712608.1\|2180815_2181754_-\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|224995	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism].	4.30917e-79
NZ_CP050020.1\|WP_004521233.1\|2177236_2177917_+\|PspA/IM30-family-protein	gnl\|CDD\|224755	COG1842, PspA, Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms].	5.00746e-22

>NZ_CP050020.1|WP_009890520.1|2183922_2185335_-|8-oxoguanine-deaminase
MERYSSARAGAQSQSPNRPRTLVVKHADVLVTMDGARRELRDAGLYVEDNRIVAVGPSAELPAQADEVLDLRGHLVIPGLVNTHHHMYQSLTRAIPAAQNAELFGWLTNLYRIWAHLTPEMIEVSALTAMAELLLSGCTTSSDHLYIYPNGSRLDDSVAAAQRIGMRFHASRGSMSVGQRDGGLPPDSVVEREPDILRDTQRVIETYHDEGRYAMLRVVVAPCSPFSVSRGLMRDAAALAREHRVSLHTHLAENANDVAYSRETFGMTPAEYAEDLGWVGRDVWHAHCVQLDESGIALFARTGTGVAHCPCSNMRLASGIAPVARMRVAGVPVGLGVDGSASNDGAQMVAEVRQALLLQRVGFGPDAMTARDALEIATLGGARVLNRDDIGALAPGMAADFVAFDLRTPQFAGALHDPVAALVFCAPSQAAYSVVNGRVVVREGRLTAFEIEPLVERHNALAKALCEAAR
>NZ_CP050020.1|WP_009890521.1|2182803_2183733_+|LysR-family-transcriptional-regulator
MSQQREAIDTYLLRVLHTLLMERSVTRAAVKLNQSQPAISAALRRLRDITGDPLLVRGKSGMVPTEYGLRLLEPVQNALREIERIKFQQHNFDPATSIRCYRIGCPDYLNVLFVPTVVERFRQAAPNATLEFHSLGPAFDYELALEDGKLDIVVGNWPEPPEQLHLSNLFVDEIVCLMSNAHPFAKRGGLTLDQYLNAPHLAPTPYSVGQRGAIDVHLARERLKRHVVVTLPYFNLAPYVLVKSDLIFTTTRLFADHYAKFLPLSVVPAPLDFPPMQYYQLWHERCHYSDEVRWLRGLVAEATRTLIDA
>NZ_CP050020.1|WP_127462262.1|2182106_2182748_+|hypothetical-protein
MERSFAREATVAPRHTRNACRILPLPRCGIRRNRHASRRTSRVSGERSSCPHDDLRRTARRRSFTAFRTAGPLAEIDAESATPSRATHNDNIAPTRIDTRDAPVRRADVRGRRVTGLASFARRRIDLFSSLVSPSSLAIHFLPPFLPPLFRTPFRIPFCAPFRHPFRDPHRRAFARLHRKLVTRRPRRSPVANRPRRARRLECAALDAPLCPY
>NZ_CP050020.1|WP_009890522.1|2181842_2182052_+|dodecin-domain-containing-protein
MNDHVYKLLELTGSSRQSSDDAIRNAISKAAKTMRNLHWFEVTDMRGHIEGDQVIHWQVTLKVGLRIED
>NZ_CP050020.1|WP_038712608.1|2180815_2181754_-|NAD(P)-dependent-oxidoreductase
MMGGNFNRYSNERKGEDVDVGFCGPGLMGAPMIRHLLSAGHRVHVWNRTRAKADALAAHGAQVVDTPAELAARAQTVMLCVLDAQAVGDVVFGASGVLAGDAAVRCVTRIVDHSSIPPAATRAYAARAAALGASWVDAPVSGGVPGAEAGTLAVMAGGAQADVDAVRGLIGAYASRVTHLGDAGAGQTAKLCNQAIVTASVTAIAEAVGLAQASGIDAARLAEALAGGWADSVLLQTFVPRMTSTGHPPIGALKTFQKDVDAIADAARDAGAVMPVAATVQQVLRLGAAMGLAQADFAAFIDIVRPQAKRGE
>NZ_CP050020.1|WP_011402254.1|2180176_2180665_+|hypothetical-protein
MRMPHFLQLFLRRVFMSFPKKRRRAQPDGQESFLAVLRHAKPFAQLDTKIARARAQDEPVLYAHVLPGLDVLLCSVRGAQPPYPAIVELRKRCIESIANALEQPLDGLENGGYWYEANGFGFLVFASRARARILPEFGAGVKAGLRSGIGQPNAGDTTPRSL
>NZ_CP050020.1|WP_004192898.1|2179419_2179851_+|large-conductance-mechanosensitive-channel-protein-MscL
MSIIKEFKEFAVKGNVMDLAIGVIIGGAFSKIVDSVVKDLIMPVIGVLTGGLDFSNKFVLLGQIPASFKGNPESFKDLQAAGVATFGYGSFITVLINFIILAFIIFLMVKFINKLRKPEEAAPAATPEDVLLLREIRDSLKQR
>NZ_CP050020.1|WP_009890543.1|2178030_2179236_+|tetratricopeptide-repeat-protein
MKKLLAAVGLSLILVSAAANAAVPSLQQIQQSIAQGNWQRADAQLSQVIDAYPDNARARYLYGQVLDREGRPAEALAQIERAKSLDPQLRFTDPSRFAQTEARVRADARRATSAQSSRSATSGGMLVAPQTQGQAQSQFAAAPAAPAHRGPSAGMWIGFAVLIGAIVLVLRRTLRRARSADDQRAGDERRAQLKRATDVLNDVRPLKLDARLSTAPGAGALNGEIEALEAQARELVETLSNGQNPVPPYRLDELEKQFASLKARVEGRPDPGAASAAANAPGQTGSVFAQEADRLTGAQGQPPYSPYPPQPQQQPPVVIQQGGGFGGGMGGLLTGVLLGQAMSNGRDRVIEREVIVDDEARRRAGADPGIDFGQGDSWDSGGSDGGGIDLGSSGDDWSNNG
>NZ_CP050020.1|WP_004521233.1|2177236_2177917_+|PspA/IM30-family-protein
MSLFDSISRTIKGLLNDAADSVQDPSRDARQIVRELDDSIGRAENSLIEIEAQVATQRSKRDTADERAKKYEDGAKRALQSGDEALAREALAAQANAEAERDALARELDTLEPSVDKLKGQIADMRARRNDLNARSNILQAKQEIAQAKDVAATALGGIGGKNLSEDFQKLEDKVALSNARSDARLNSADTNSGRALDDKLAALNKGPSVEDRLEALKKQLNTPAQ
>NZ_CP050020.1|WP_011402255.1|2174197_2176720_-|penicillin-binding-protein-1A
MPIIKRPPSSRATNEHHYSLRRSPAGAYYTDDDDGDDHASRRTNRDGGSRTFGSRVALWFVGLFATLLVVGALIVGYALVVMGPQLPSLDALTNYQPKVPLRVYSADHVLLGEFGEERRSLVRFADIPDVMKKAVLAIEDYRFYEHGGVDFVGILRAGVADLLHGGARQGASTITMQVARNFFLSSEKTYTRKIYEMLLAYKIERALTKDQILELYMNQIYLGQRAYGFAAAARVYFGKDLKDITLAEAAMLAGLPKAPSAYNPVVNPKRAKVRQEYILKRMLEIGYITQQQYDQAVKEEIHVRTPGNQYAVHGEYVAEMVRQMMYAQYKDETYTRGLTVTTTINAADQEAAYQAVRRGIMDYERRHGYRGPEGFVALPPAGDGRDEAIDDALADHPDNGDLQSAVVLAASPAALDVQFVGGATATINAAGLRFAAGALSSRASAALKIKPGSIVRVMKDAKGAWQIVQLPQVEGALVAVAPQDGAIRSLVGGFDFNKSKFNHVTQAWRQPGSSFKPFIYSASLEKGLGPATIINDAPLYFPPSVPGGQPWEPKDDDQPDGPMSMRTALQRSKNLVSIRILASIGTSYAQDYVTKRFGFDPAKTPPYLPMALGAGLVTPLQLAAGYAVFANGGYKVDPYLIAEVDDARGQALQKAQPVVAGASATRTIDARNAYVMNSLLHTVATAGTGAGTNALGRGDLQGKTGTTNDAKDGWFAGYQQSLVAVAWMGFDQPRSLGSREFGAQLALPIWVNYMRTALSGVPEQQMAMPDGLTTIDGELYYADRTPGAGFIANVDFNPAASPTVSANDALGSAGAAGLTPPPVTPEEKRQIIDMFEGNKP
>NZ_CP050020.1|WP_009890518.1|2185967_2186321_+|hydroxyisourate-hydrolase
MGKLTTHVLDTAHGRPGAAIKIELHAISGGGSRLLKTALTNDDGRCDAPLLEGDALAAGTYELVFHAGDYFAAQGVALPEPRFVDLVVLRFGVADPAAHYHVPLLVSPWSYSTYRGS
>NZ_CP050020.1|WP_009890516.1|2186370_2187573_+|membrane-protein
MEGFIIDWLNLAIRWLHVVAAIAWIGESFYFVALDNSLKPPKDAQLKSRGVFGELWHVHGGGFYNMQKYLVAPPEMPEDLHWSKWPSYTTWMSGFGLFFVLYLLAPNTYLIDRNVLDMGPVVAVASALGFLLAGWIVYDCACRMLGGRDKLLGVFVGLYVIAAAYIACHVFSGRAAYLIVGAMLATIMTANVFFVIIPGQRKMVDKLLKGETPDPIYGKRGKQRSVHNTYFTLPVVFAMLSNHYAMTYTNQYNWIVLVVIMLAGALIRQFFVMRHRGQQLWYLPLGGVALMLLALVTTMPKPIAPEAQAANAPNVPKLAIKDVAPILQQRCVACHSAKPTLVGSAPAGVMFDTSDEIARNAPRIYQQAVQLKAMPIGNLTHMTDDERTKIAAWFESGATK
>NZ_CP050020.1|WP_009890512.1|2187788_2188127_-|hypothetical-protein
MVIVGCIYLLVFAPLVYVLFLLHGMTIRLGGACLGIAAWVALSIAAIGIVRGWAWSRHWLIGGLIGLWIVSSNAGANGGDVAARGLDYICVALPLFTRRSTAFFRSRRDIEA
>NZ_CP050020.1|WP_009890510.1|2188513_2189026_-|ureidoglycolate-lyase
MNTLAIEPLTRAAFAPFGDVIETAGAKQIPINLGTTVRFHDLARIDVADEGGRPLVNLFRGQPRTLPFEVTMLERHPLGSQAFIPLTDRPYIVVVAPAGVLDPPKIRAFVTSGWQGVNYAKGVWHHPLIALGGVSDFIVVDRGGGGGNLDEQDLAGSLWLTEDALLAVSA
>NZ_CP050020.1|WP_165981594.1|2189022_2190036_-|allantoicase
MALPLSDPNAPEFTRRYVNLADPRLGAQALEASDDFFAPKERMLSPEPAVFIPGKYDDHGKWMDGWETRRKRTTGYDWCIVKLARPGVIKGFDIDTSHFTGNFPPAASIEAAHVPDGVPNEATKWVEVVPSTTLQGNSHHYVEARDANAYTHLRVNIYPDGGIARLRVYGQPQLDWAGASRSELFDLAAMDNGGYVVAANNQHFGLASNMLLPGRGVNMGDGWETRRRREPGNDWAIVAIAQPGVIRKIEVDTAHFKGNFPDRCSVQAAYVTGGTDSSLVTQAMFWPVLLGEQKLQMDKQHVFEAELAALGPVTHVRLNIIPDGGVSRLRVWGTLDK
>NZ_CP050020.1|WP_038707963.1|2190275_2190797_-|2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline-decarboxylase
MKAMRYTLEQLNAMSTEAFVAALSGIFEHSPWVAEAAAAARPFSSIDALHRTMRDAVDAAGDARQLALINAHPELAGKAAVRGELTAESTREQSGAGLDRCTQEEFDKLQRLNRAYREKFGFPFILAVRGYDRHGIIENFEARIDHTQDEELRASLGQIYRIARFRLDDLIDA
>NZ_CP050020.1|WP_009890507.1|2190796_2191750_-|allantoinase-PuuE
MAFDPNYPRDLVGYGRHPVQANWPGRARVAVQFVLNYEEGGENCVLHGDPASEQFLSEIVGAAAYPARHMSMESIYEYGSRAGVWRILREFDKRGLPLTVFGVGMAIERHPELARAFVEFGHEIACHGWRWIHYQDMTPEREAEHMKLGMEAIERVTGVRPLGWYTGRDSPNTHRLVAEYGGFLYDSDHYGDDLPFWMDVEVPGGARAPQLIVPYTLDANDMRFATPQGFNTADHFFHYLRDAFDVLYEEGDEAPKMMSIGMHCRLLGRPGRFRALQRFLDHIERHDRVWVARRVDIARHWREHHPYRPHARREGDA
>NZ_CP050020.1|WP_038712601.1|2191895_2192759_-|aspartate/glutamate-racemase-family-protein
MKIKLINPNTTQRMTDAMGRCAREVAAAGTAIVAVSPAMGPPSIEGHYDEALATPGLLAEVAAGERDGFDGYVIACFGDPGLYAARELARGPVIGIAEAAMHAASVLAPGFSVVTTLARTCGMAWHLAERYGMKRFCRNVRATDVAVLDLDRPGSAARRVIVDECRRALDEDGTDAIVLGCAGMAEFAHEIEAAIGAPVVEGVTAAVKWAEALIALKLATAKRGDFARPLAKRYDGEFARFSPDGAFARGAEAAAGAAVGPDAAAPGAAIQDARSPDAFAQPHIHSV
>NZ_CP050020.1|WP_011402249.1|2192769_2194260_-|NCS1-family-nucleobase:cation-symporter-1
MAQFSVAQQSASYRPNEGRPGDPDGGAAMPAGYSKRLYNEDLAPLANQNWGAYNIFAFWMSDVHSVGGYVFAGSLFALGLTSWQVLAALIVGISIVNVLCNLIAKPSQQLGVPYPVACRATFGVLGANVPAVIRGLIAIAWYGIQTYLASSALVIVVLKFFPQWMPYADVHRYGFLGLSALGWAGFMLLWVLQAFVFWNGMETIKKFIDFAGPAVYVVMFVLAGYMVWRAGWRNIGLDLGGVKYHGAEVLPVMVTAISLVVSYFSGPMLNFGDFSRYCRSYGSVKRGNFWGLPVNFLAFSLVTVITTAATLPVFGQLITDPVETVGRIDHPTAVILGALTFTIATIGINIVANFVSPAFDFSNVAPRLISWRAGGMLAAVASVFITPWNLFNNPAVIHYTLDVLGSFIGPLYGVLIVDFYLVKRGALRRDDLYTTSADGAYWYRDGVNRRAVAALLPAAAIAVACVMVPAPSGLANFSWFIGAALGGAFYRALAKA
>NZ_CP050020.1|WP_009890502.1|2194415_2195111_-|GntR-family-transcriptional-regulator
MTKKDSALTGASPESIAERIRTAILEHRLAPGTKLTEAQLCEVFGVKRGTIRQALALLATDRLVDLEPNRGAFVASPTLQDVHEVFEMRRIVELAVMERLATGPGAKRLKGVAATIDKERHAFERRDFPAWIRLSGEFHTELAALTGNTVLRDCLGGLVARSTLMSALYESHGRSPCSFDDHAQILAALEAGDAKRAAQLMAHHLQHVELRMLDRPAQGAVDLREVFGHSG

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Crispr_ID: NZ_CP050020_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP050020_3

3685703-3685826

Orphan

Consensus_repeat	Method
TTAGCGCTTACTCCGATCCCATGCCGTGGTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP050020_3

>merge|NZ_CP050020|3|3685703-3685826|CRISPRCasFinder
TTAGCGCTTACTCCGATCCCATGCCGTGGTTGGCCGAAGTTAGCGCTTCAGCGCTTACTCCGGCCCCGCGGCGGTCGATCGGAGTTAGCGCCTTAGCGCTTACTCCGATCCCATGCCATGGTTG

>NZ_CP050020|3|3|3685703-3685826|CRISPRCasFinder
TTAGCGCTTACTCCGATCCCATGCCGTGGTTG	GCCGAAGTTAGCGCTTCAGCGCTTACTCCGGCCCCGCGGCGGTCGATCGGAGTTAGCGCC
TTAGCGCTTACTCCGATCCCATGCCATGGTTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP050020.1\|WP_009910293.1\|3683297_3685028_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|236236
NZ_CP050020.1\|WP_004195828.1\|3691114_3691384_-\|F0F1-ATP-synthase-subunit-C	unknown	unknown	gnl\|CDD\|180739
NZ_CP050020.1\|WP_004185283.1\|3690516_3690987_-\|F0F1-ATP-synthase-subunit-B	unknown	unknown	gnl\|CDD\|180240
NZ_CP050020.1\|WP_059844301.1\|3677861_3680129_-\|primosomal-protein-N'	unknown	unknown	gnl\|CDD\|235514
NZ_CP050020.1\|WP_009910284.1\|3670502_3672044_+\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|341286
NZ_CP050020.1\|WP_009906701.1\|3687439_3688315_-\|F0F1-ATP-synthase-subunit-gamma	unknown	unknown	gnl\|CDD\|235535
NZ_CP050020.1\|WP_009906702.1\|3688386_3689928_-\|F0F1-ATP-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|236448
NZ_CP050020.1\|WP_025992327.1\|3692424_3692955_-\|ATP-synthase-subunit-I	unknown	unknown	gnl\|CDD\|377159
NZ_CP050020.1\|WP_011402665.1\|3677680_3677851_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|341251
NZ_CP050020.1\|WP_009906695.1\|3680569_3681664_-\|uroporphyrinogen-decarboxylase	unknown	unknown	gnl\|CDD\|234644
NZ_CP050020.1\|WP_004524506.1\|3685968_3687360_-\|F0F1-ATP-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|236447
NZ_CP050020.1\|WP_009910291.1\|3681812_3682607_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270231
NZ_CP050020.1\|WP_009906697.1\|3683061_3683256_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050020.1\|WP_009910285.1\|3673467_3677397_-\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|236989
NZ_CP050020.1\|WP_009910297.1\|3693225_3694359_-\|citrate-transporter	unknown	unknown	gnl\|CDD\|238537
NZ_CP050020.1\|WP_009906688.1\|3672243_3673383_-\|branched-chain-amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380565
NZ_CP050020.1\|WP_009906704.1\|3691460_3692312_-\|F0F1-ATP-synthase-subunit-A	unknown	unknown	gnl\|CDD\|235617
NZ_CP050020.1\|WP_009906703.1\|3689974_3690514_-\|F0F1-ATP-synthase-subunit-delta	unknown	unknown	gnl\|CDD\|235593
NZ_CP050020.1\|WP_009906700.1\|3685247_3685673_-\|F0F1-ATP-synthase-subunit-epsilon	unknown	unknown	gnl\|CDD\|234796
NZ_CP050020.1\|WP_009910299.1\|3694365_3695253_-\|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl\|CDD\|275105

Protein	Function_ID	Function_description	E-value
NZ_CP050020.1\|WP_009910293.1\|3683297_3685028_-\|AMP-binding-protein	gnl\|CDD\|236236	PRK08315, PRK08315, AMP-binding domain protein; Validated.	0
NZ_CP050020.1\|WP_004195828.1\|3691114_3691384_-\|F0F1-ATP-synthase-subunit-C	gnl\|CDD\|180739	PRK06876, PRK06876, F0F1 ATP synthase subunit C; Validated.	4.52385e-24
NZ_CP050020.1\|WP_004185283.1\|3690516_3690987_-\|F0F1-ATP-synthase-subunit-B	gnl\|CDD\|180240	PRK05759, PRK05759, F0F1 ATP synthase subunit B; Validated.	5.5546e-56
NZ_CP050020.1\|WP_059844301.1\|3677861_3680129_-\|primosomal-protein-N'	gnl\|CDD\|235514	PRK05580, PRK05580, primosome assembly protein PriA; Validated.	0
NZ_CP050020.1\|WP_009910284.1\|3670502_3672044_+\|AMP-binding-protein	gnl\|CDD\|341286	cd17631, FACL_FadD13-like, fatty acyl-CoA synthetase, including FadD13. This family contains fatty acyl-CoA synthetases, including Mycobacterium tuberculosis acid-induced operon MymA encoding the fatty acyl-CoA synthetase FadD13 which is essential for virulence and intracellular growth of the pathogen. The fatty acyl-CoA synthetase activates lipids before entering into the metabolic pathways and is also involved in transmembrane lipid transport. However, unlike soluble fatty acyl-CoA synthetases, but like the mammalian integral-membrane very-long-chain acyl-CoA synthetases, FadD13 accepts lipid substrates up to the maximum length of C26, and this is facilitated by an extensive hydrophobic tunnel from the active site to a positively charged patch. Also included is feruloyl-CoA synthetase (Fcs) in Rhodococcus strains where it is involved in biotechnological vanillin production from eugenol and ferulic acid via a non-beta-oxidative pathway.	5.94488e-162
NZ_CP050020.1\|WP_009906701.1\|3687439_3688315_-\|F0F1-ATP-synthase-subunit-gamma	gnl\|CDD\|235535	PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated.	6.55675e-157
NZ_CP050020.1\|WP_009906702.1\|3688386_3689928_-\|F0F1-ATP-synthase-subunit-alpha	gnl\|CDD\|236448	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated.	0
NZ_CP050020.1\|WP_025992327.1\|3692424_3692955_-\|ATP-synthase-subunit-I	gnl\|CDD\|377159	pfam03899, ATP-synt_I, ATP synthase I chain. The atp operon of alkaliphilic Bacillus pseudofirmus OF4, as in most prokaryotes, contains the eight structural genes for the F-ATPase (ATP synthase), which are preceded by an atpI gene that encodes a membrane protein with 2 TMSs. A tenth gene, atpZ, has been found in this operon, which is upstream of and overlapping with atpI. AtpI is a Ca2+/Mg2+ transporter.	4.5358e-12
NZ_CP050020.1\|WP_009906695.1\|3680569_3681664_-\|uroporphyrinogen-decarboxylase	gnl\|CDD\|234644	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated.	0
NZ_CP050020.1\|WP_004524506.1\|3685968_3687360_-\|F0F1-ATP-synthase-subunit-beta	gnl\|CDD\|236447	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated.	0
NZ_CP050020.1\|WP_009910291.1\|3681812_3682607_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270231	cd01069, PBP2_PheC, Cyclohexadienyl dehydratase, a member of the type 2 periplasmic binding fold protein superfamily. This subfamily includes cyclohexadienyl dehydratase PheC. These proteins catalyze the decarboxylation of prephenate to phenylpyruvate in the alternative phenylalanine biosynthesis pathway in some proteobacteria and archaea. The PheC proteins belong to the PBPII superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. Since they the PheC proteins are so similar to periplasmic binding proteins, (PBP), it is evolutionarily plausible that several pre-existing PBP proteins might have been recruited to perform the enzymatic function.	1.49544e-125
NZ_CP050020.1\|WP_011402665.1\|3677680_3677851_+\|hypothetical-protein	gnl\|CDD\|341251	cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM). MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12.	0.00358196
NZ_CP050020.1\|WP_009910285.1\|3673467_3677397_-\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	gnl\|CDD\|236989	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed.	0
NZ_CP050020.1\|WP_009910297.1\|3693225_3694359_-\|citrate-transporter	gnl\|CDD\|238537	cd01117, YbiR_permease, Putative anion permease YbiR. Based on sequence similarity, YbiR proteins are predicted to function as anion translocating permeases in eubacteria, archaea and plants. They belong to ArsB/NhaD superfamily of permeases that have been shown to translocate sodium, sulfate, arsenite and organic anions. A typical ArsB/NhaD permease is composed of 8-13 transmembrane domains.	4.83084e-60
NZ_CP050020.1\|WP_009906688.1\|3672243_3673383_-\|branched-chain-amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380565	cd06342, PBP1_ABC_LIVBP-like, type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.	1.78326e-142
NZ_CP050020.1\|WP_009906704.1\|3691460_3692312_-\|F0F1-ATP-synthase-subunit-A	gnl\|CDD\|235617	PRK05815, PRK05815, F0F1 ATP synthase subunit A; Validated.	8.73438e-72
NZ_CP050020.1\|WP_009906703.1\|3689974_3690514_-\|F0F1-ATP-synthase-subunit-delta	gnl\|CDD\|235593	PRK05758, PRK05758, F0F1 ATP synthase subunit delta; Validated.	2.09611e-64
NZ_CP050020.1\|WP_009906700.1\|3685247_3685673_-\|F0F1-ATP-synthase-subunit-epsilon	gnl\|CDD\|234796	PRK00571, atpC, F0F1 ATP synthase subunit epsilon; Validated.	3.94743e-62
NZ_CP050020.1\|WP_009910299.1\|3694365_3695253_-\|ParB/RepB/Spo0J-family-partition-protein	gnl\|CDD\|275105	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein. This model describes nucleoid occlusion protein, a close homolog to ParB chromosome partitioning proteins including Spo0J in Bacillus subtilis. Its gene often is located near the gene for the Spo0J ortholog. This protein bind a specific DNA sequence and blocks cytokinesis from happening until chromosome segregation is complete.	5.52547e-78

>NZ_CP050020.1|WP_009906700.1|3685247_3685673_-|F0F1-ATP-synthase-subunit-epsilon
MATIKVDVVSAEEQIFSGLAKFVALPGEAGELGILPGHTPLITRIRPGAVRIEAESGDEEFVFVAGGILEVQPGAVTVLADTAIRGKDLDAAKAEEARKRAEETLQNAKSDIDLAKAQSELATAMAQLEAIQRLAKIRGRH
>NZ_CP050020.1|WP_009910293.1|3683297_3685028_-|AMP-binding-protein
MAADSGVGALIAPQRGLSYVRGPADVPLSEATIGRFLLDTVARFPDRAAVVFREQGVRWTWREFADEVDVLATALIELGVARGDRVGIWSPNRAEWLLTQFATARIGAVLVNVNPAYRLAELEYALNKVGCKLLIAAERFKTSAYIEMISEIAPELATTPADGMLHAARVPSLRTVVTMGAAAPAGMLSFADVLARGRAALDPARLDAIGAALDCRDPINIQFTSGTTGSPKGATLTHHNVVNNACSIASVMRLTEVDAMCIPVPLYHCFGMVLSVLACVSVGAKMVFPGEAFEPGATLAAVSDERCTALQGVPTMFIAELDHPDFDRFDLSTLRTGIMAGSPCPIETMKRVVAKMHMSEVTIAYGMTETSPVSFQSSTTDSLEKRTTTVGRIQPHLEAKIVDATGAIVPVGETGELCTRGYSVMLGYWDDEARTREAVVDGWMRTGDLATLDEEGFCNIVGRLKDMLIRGGENVYPREIEEFLFRHPKIQSVQVFGVPDPKYGEEVCAWIVLRAGETMTDDELREFCRGQIAHYKVPRYVRFVDELPMTVTGKVQKFVMRERMIDELGLSVQKTA
>NZ_CP050020.1|WP_009906697.1|3683061_3683256_-|hypothetical-protein
MSPLKTTRYGVSARRPKMERIGVGRRRLQQGCPCEGIRYETDGPVIRACVRSHAAHETASVLKP
>NZ_CP050020.1|WP_009910291.1|3681812_3682607_+|transporter-substrate-binding-domain-containing-protein
MKMKITLLALACCAGFAHAQAAREHAAPAMPASRLDDVLARGTLRVCTTGDYKPYTYRREDGAFEGIDIDMAASLAKSLGVKTAFVKTTWPTLTDDFVAKCDIAVGGISTTLERQKHVFFTQPYVTDGKTPIVRCADVERYQTIAQIDQPQTRVIVNPGGTNERFAKQHFTHARITVFPDNVTIFKQILAGNADVMVTDASETLLQQKLNPGLCSVHPDKPFQFGEKAYMVPRGDVVFQQYVDQWLHLARETGELQAISDKWLK
>NZ_CP050020.1|WP_009906695.1|3680569_3681664_-|uroporphyrinogen-decarboxylase
MAQTLINDTFLRALLREPTDYTPIWLMRQAGRYLPEYNATRARAGSFLGLAKHPDYATEVTLQPLERFPLDAAILFSDILTIPDAMGLGLDFAAGEGPKFAHPVRTEADVAKLAVPDIGATLGYVTDAVREIRRALTDGEGRQRVPLIGFSGSPWTLACYMVEGGGSDDFRTVKSMAYARPDLMHRILDVNAQAVAAYLNAQIEAGAQAVMIFDTWGGALADGAYQRFSLDYIRRVVAQLKREHDGARVPAIAFTKGGGLWLEDLAATGVDAVGLDWTVNLGRARERVAGRVALQGNLDPTILFAPPEAIRAEARAVLDSYGNHPGHVFNLGHGISQFTPPEHVAELVDEVHRHSRAIRSGTGS
>NZ_CP050020.1|WP_059844301.1|3677861_3680129_-|primosomal-protein-N'
MADAFVRVALDHPLPTLFDYRYRGDAPAAPGMLVQVPFGRRSAVGLVCEVTAHTDVPANKLKAVDAVCAELPPLSRRWLDLVAFAADYYQRGLGEVALPALPQALRDVTRWGRLLAPELRYRLLDAGRAALPAALPARGAALRRLAQALADAPALSLAEVRALHPKAVAVLDEWQAQGWAACDEIAITHAHAQFVGNPAPIAGWRAVASRPQLTDQQADALDAIASADGFVPFLLHGVTGSGKTEVYLRALAALLERRSDAQALVLVPEINLTPQFEAAFRARFAATLPADAIVTLHSGLAEGERARHWLAAHTGRARIVLGTRLAVLASLPALAMIVVDEEHEPAYKQQEGLRYSARDLAVWRAKQCAIPVVLGSATPSLETWWQAEQGRYRRLTLTKRAVADAALPTVRLVDLEEERRRGRGSIGGLSGPLVAALKARLERGEQSLVFLNRRGYAPALACDACGWVAGCPRCSAYVVMHKPEHAVRCHHCGWEARIPRSCPECGNVDIAPLGRGTQRVEETLALAVPGARVLRIDADSTRRKGSAQALFSDVHAGEVDILVGTQMIAKGHDFQRVSLVGVLNADTALFSHDFRASERLFAQLMQVSGRAGRAGLPGEVLIQTRYPRHALYHALARQDYVGFAGATLGERRDAHLPPFVYQALLRAEGRTLEAALVFLQQAADAFSALPGAERVTVYDAVPMTIVKVANVHRAQLLIESASRAALQHTLRAWQPLLRELRGVLRWSVEVDPLDI
>NZ_CP050020.1|WP_011402665.1|3677680_3677851_+|hypothetical-protein
MDGWVVIGIVLAAWIAGAIVFVHRASAVFFQALGYAHGAKKGKRRARIPGLREAHE
>NZ_CP050020.1|WP_009910285.1|3673467_3677397_-|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase
MASTTLGVKVDDLLRARLKDAASRLERTPHWLIKQAIFAYLERIEHGQLPPELSGHTGMADLSDGHADGDEDGAPHPFLEFAQNVQPQSVLRAAITAAYRRPEPECVPFLIGEARLPASLAPDVQSMAAGLVEALREKSSGGGVEGLIHEFSLSSQEGVALMCLAEALLRIPDRATRDALIRDKISKGDWRSHVGHAPSLFVNAATWGLMITGKLVTTNSEAGLSSALTRLIGKGGEPLIRKGVDMAMRLMGEQFVTGETISEALANSRKYEARGFRYSYDMLGEAATTEEDALRYYASYEQAIHAIGKAAGGRGIYEGPGISIKLSALHARYSRSQQERTMNELLPRVRSLALLARRYDIGLNIDAEEADRLELSLDLLEALCFDSELAGWNGIGFVVQAYQKRCPFVIDYLVDLARRSRHRLMIRLVKGAYWDSEVKRAQVDGLEGYPVYTRKIYTDVSYLACAKKLLAAPDAVYPQFATHNAYTLAAIYHLAGQNYYPGQYEFQCLHGMGEPLYEEVTGRDKLNRPCRVYAPVGTHETLLAYLVRRLLENGANTSFVNRIADKTVSVKELVADPVEEAAKVVPLGAPHAKIALPRELYGASRVNSMGLDLSNEHRLASLSSALLASAHHPWRAAPMLADDALAHAEPRDVRNPADLRDVVGTVSEATPEEVGAALAHAVAAAPIWQATPVDARADCLARAADLLEAQMHTLMGLIVREAGKSLPNAIAEIREAVDFLRYYSAQIRDEFSNDTHRPLGPVVCISPWNFPLAIFMGQVAAALAAGNTVLAKPAEQTPLIAAQAVRLLRDAGVPAGAVQLLPGNGETVGAALVADPRTRAVMFTGSTEVARLINKTLSSRLDPDGKPIPLIAETGGQNAMIVDSSALAEQVVADVLQSSFDSAGQRCSALRVLCLQDDVADRTLTMLKGAMRELALGNPDRLSVDVGPVIDADAKRTIDAHIAAMKDKGHAVTQLEMPEACAQGTFVPPTIIEIGNVDELKREVFGPVLHVVRYRRSGLDKLLEQIRATGYGLTLGIHTRIDETIAHVISRAHVGNIYVNRNVIGAVVGVQPFGGEGLSGTGPKAGGALYLQRLLATRPAGLPRSLEASLVADAPQEGETRDNPSAALTALRDWLIEQREPALAARCDGYLSHVLAGATAVLSGPTGERNTYTLGARGTVLCIAATASGARAQFAAVLATGNRALFASAAGEALAAALPAPLKAHAAVRKQADAAFDAVLFEGDSDELLALVKEVAQRPGPIVSVQGVAAGAFENGGDEDYALERLLTERSVSVNTAAAGGNANLMTIG
>NZ_CP050020.1|WP_009906688.1|3672243_3673383_-|branched-chain-amino-acid-ABC-transporter-substrate-binding-protein
MQHTMKKLAGATFVAVMSLAGTAHADDVKIGFAAPMTGAQAHYGKDMQNGIVLAIEDINATKPVIGGKPVKFVLDTQDDQADPRTGTTVAQKLVDDGIKGMLGHFNSGTTIPASRIYANAGIPQIAMATAPEYTQQGYKTTFRMMTSDTQQGSVAGAFAVKDLGMKKIAIVDDRTAYGQGLADQFEKAAKAAGATIVDREFTNDKAVDFKAILTKLKAAKPDLVYYGGADSQAAPMAKQMKSLGVTAPLMGGEMMHTPTFLKIAGSAAEGSIASLAGLPLAEMPGGKTYEDKYKKRFGEDVQTYSPYAYDGAMAMFNAMKKANSTDPAKYLPLLAKTDMAGVTSTHIAYDAKGDLKNGGITMYKVEKGEWKPLKSIGGK
>NZ_CP050020.1|WP_009910284.1|3670502_3672044_+|AMP-binding-protein
MNLIAALERAARATPDKPFLRDDGATITYRQMQQRSRRAAEVLASLGIAPGERVAAMCLNTPAFFDLLLGAWRIGAVVVPVNHKLQAPEVDHILRHSASRAVLFDAALAPVLAGVGHGALRLVTEGDAAGAAPFDRLVADAPGIASGTPDDAALAEILYTSGTTGRPKGCMHSHRTVALAAATSALALSMTERERTLMAMPIWHASPLNNWFGGTLYVGGTVVLMREYHPLRFLQTVEAEQATLYFGAPVSYTLPLDTIADFASFDLTSVRAWLYGGGPIGAALARRLMRAYRSEAFYQVYGMTETGPAGTVLHPFEQTMKAGSIGRQGTPGVDVRVVTAVGDVARPGEIGEIRLRADSMMLGYLDDPDATRAAFDDDGWHRSGDVARVDDDGYLFVVDRIKDMIVTGGENVYSKEVEDVLTEHPAVAEAAVIGRAHPQWGETVIAHVVLRGAGSADRAPDGERAVDADALRAFCATRLAAYKIPREYVFAERLPRTPTGKLQKYLLRARGGA
>NZ_CP050020.1|WP_004524506.1|3685968_3687360_-|F0F1-ATP-synthase-subunit-beta
MSTAALVEGKIVQCIGAVIDVEFPRESMPKIYDALILEGSELTLEVQQQLGDGVVRTICLGASDGLRRGVVVKNTGNPISVPVGKPTLGRIMDVLGRPIDEAGPIESENKRSIHQKAPAFDELSPSTELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMELINNIAKEHGGYSVFAGVGERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVALTGLTMAEHFRDEGLDVLFFVDNIYRFTLAGTEVSALLGRMPSAVGYQPTLAEEMGKLQERITSTKKGSITSVQAVYVPADDLTDPSPATTFGHLDATVVLSRDIASLGIYPAVDPLDSTSRQIDPNVIGEEHYSITRRVQQTLQRYKELRDIIAILGMDELSPEDKLSVARARKIQRFLSQPFHVAEVFTGSPGKYVPLKETIRGFKMIVDGECDHLPEQAFYMVGTIDEAFEKAKKI
>NZ_CP050020.1|WP_009906701.1|3687439_3688315_-|F0F1-ATP-synthase-subunit-gamma
MAGMKEIRGKIKSVQNTRKITKAMEMVAASKMRRAQERMRAARPYAEKVRAIAAHMSRANPEYRHPFMVANEGVKTAGMILVTTDKGLCGGLNTNVLRASLQKFKELEEKGQKVEATAIGGKGLGFLNRFGAKVISQVVHLGDTPHLDKLIGAVKTQLDLYSEGRLSAVYLAYTRFVNTMKQETVIEQLLPLSSEHFDANDGTPATSWDYIYEPDAQAVVDELLVRYVEALVYQAVAENMASEQSARMVAMKAASDNAKTVISELQLSYNKSRQAAITKELSEIVGGAAAV
>NZ_CP050020.1|WP_009906702.1|3688386_3689928_-|F0F1-ATP-synthase-subunit-alpha
MQLNPSEISELIKSRIQGLEASADVRNQGTVISVTDGIVRIHGLSDVMQGEMLEFPGNTFGLALNLERDSVGAVILGEYEHISEGDIVKTTGRILEVPVGPELVGRVVDALGNPIDGKGPVNAKLTDAIEKIAPGVIWRKSVSQPVQTGLKSIDSMVPIGRGQRELIIGDRQCGKTAVAIDTIINQKGKDLICIYVAIGQKASSIMNVVRKLEETGALEYTIVVAASASESAAMQYLAPYAGCTMGEYFRDRGQDALIIYDDLTKQAWAYRQISLLLRRPPGREAYPGDVFYLHSRLLERAARVSEEYVEKFTNGEVKGKSGSLTALPVIETQAGDVTAFVPTNVISITDGQIFLETDLFNAGIRPAINAGVSVSRVGGAAQTKVVKKLSGGIRTDLAQYRELAAFAQFASDLDEATRKQLERGRRVTELLKQPQYQPLQVWELAVSLFSANNGYLDDLDVKDVLPFEKGLREYLKTSHADLIKRIEDTKDLSKDDESALHAAIKDFKKSGAY
>NZ_CP050020.1|WP_009906703.1|3689974_3690514_-|F0F1-ATP-synthase-subunit-delta
MAELATIARPYAEALFRVAEGGDISAWSTLVQELAQVAQLPEVLSVASSPKVSRAQVAELLLATLKSPLASGAQAKNFVQMLVDNHRIALLPEIAVQFEALKNAREGAADVQIVSAFPLEGAQLAELVTSLERKFKRKLKPAVEVDSSLIGGVRVTVGDEVLDTSVRARLAGMQAALTA
>NZ_CP050020.1|WP_004185283.1|3690516_3690987_-|F0F1-ATP-synthase-subunit-B
MNLNATLFAQMVVFLVLAWFTMKFVWPPLINALDERSKKIADGLAAAEKGKAELEAAHKRVDQELAQARNDGQQRIADAEKRALAVADEIKTNAQAEAARIIAQAKAEAEQQIVKARETLRGEVAALAVKGAEQILKREVDQTAHAELLNQLKAEL
>NZ_CP050020.1|WP_004195828.1|3691114_3691384_-|F0F1-ATP-synthase-subunit-C
MQAFIANIQGLTAIGIGIIIGLGAIGACIGIALMGGKYIEACARQPELINPLQTKMFLLAGLIDAAFLIGVGVAMLFAFANPLLSKLAG
>NZ_CP050020.1|WP_009906704.1|3691460_3692312_-|F0F1-ATP-synthase-subunit-A
MAASEGTRAPDPSEYIAHHLQNFSTSHQTSIFDIHVWNLDTLFWSIVCGLITILLLRLAARKATPGVPGRFQCAIEMLVEMVEDQSKAIVHGNRAFIAPLALTVFVWVALMNSLDFLPVDLPGRVIGWLGLSGVISHHRIVPTADLNGTLGIALGVFVLMLYYSVKIKGVGGFAHELVSAPFGAHPLLWIPNLALNIVEYVAKTVSLGMRLFGNMYAGELVFLLIALLGSMWSFGGDATFLGFVGHVIAGSVWAIFHILIVLLQAFIFMMLTLVYLGQAHDAH
>NZ_CP050020.1|WP_025992327.1|3692424_3692955_-|ATP-synthase-subunit-I
MADRAPDKRHGDRRAGQRTVSGGVGRHESAADDWDAEQQEEDVVPLTRAEAQALFGPEVSQPSRVTPYRVVVAQMVLSLVATLAWWLFSRSPGAAAQSAFLGGAIGWVPSALFVARLRLSGAGTVMGWVAGEALKLGVTIAMFAAVAFGYPGVHWVPLLVTYLVVLKTYWIALAWR
>NZ_CP050020.1|WP_009910297.1|3693225_3694359_-|citrate-transporter
MSNSVVGRATARIIAFVRHEPVLSILVAALIALQLVRPQSAGALVRLVDWQTVATLAGLLMLTKALELSGFLMWLAHRIVHRVRSERALAALLVVFAASLSVWLTNDVALFVVIPLVLSLRELTPLPFKRLVIYIALAVNAGAIATPLGNPQNLFLWQLSGISFGRFVIALGPLALVLMALLLAMTAIAFDGRPLDLSKDHAERPVDRAHAFATVAMFAGFVLLADAHHALAGVLAVAAIFLIVRRDAVLKIDWLLLLIFVLMFIVLRSAALLPAVHRTIADIGLDTPLRAYAAGALLSQAISNVPAAILLSEFTRDWRALAFGVSVGGFGIAIGSLANLIAIRLSRARGMWLPFHLVSIPFGIASAVLGALLLHYF
>NZ_CP050020.1|WP_009910299.1|3694365_3695253_-|ParB/RepB/Spo0J-family-partition-protein
MNAVAKKKGLGRGLEALLGGSADITEAVKIEGAPNVLALGKLQAGKYQPRTRMDEGSLQELAASIRAQGVMQPILVRPISSDKFEIIAGERRFRAARLAGLEEVPVLVKDVSDQAAAAMALIENIQREDLNPLEEAHGIQRLLDEFGFTHEQAAESVGRSRSAVSNLLRLLNLAMPVQTMLLAGDLDMGHARALLAVDAATQITLAHQVVNKRMSVRETEKLVTHTTKSEPAVKARAKDDGGRDTRRLEEELSDLLASNVKIKVGRRGRGQLTIDFGDLDALEGILARLRGNVAA

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

93235 : 160322

Vibrio_phage(16.67%)

transposase,integrase,tRNA,tail,protease

attL 80543:80570|attR 95372:95399

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
80543:80570	attL	NA	NA	NA	NA
WP_025369672.1\|93235_94465_+\|integrase	tyrosine-type recombinase/integrase	G9L697	Escherichia_phage	8.0e-66	36.8
WP_165981626.1\|94638_95838_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	9.2e-43	42.7
95372:95399	attR	NA	NA	NA	NA
WP_009908304.1\|96513_97062_+	hypothetical protein	NA	NA	NA	NA
WP_009908303.1\|97304_98756_+	RNA polymerase sigma factor RpoD/SigA	A0A2I7SAT0	Vibrio_phage	3.4e-31	34.4
WP_009908302.1\|98771_100385_-	glutamate--cysteine ligase	NA	NA	NA	NA
WP_009908301.1\|100534_101476_-	3-methyladenine DNA glycosylase 2	NA	NA	NA	NA
WP_009908300.1\|101472_102567_-	bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada	A0A0G2Y1B6	Acanthamoeba_polyphaga_mimivirus	1.3e-19	38.1
WP_009908299.1\|102969_103386_+	lactoylglutathione lyase	NA	NA	NA	NA
WP_009908298.1\|103513_104068_-	YaeQ family protein	NA	NA	NA	NA
WP_009902065.1\|104288_104636_-	hypothetical protein	NA	NA	NA	NA
WP_009908296.1\|105121_105682_-	spermidine N1-acetyltransferase	NA	NA	NA	NA
WP_004524602.1\|105841_106012_+	hypothetical protein	NA	NA	NA	NA
WP_009902052.1\|106355_106511_-	lipoprotein	NA	NA	NA	NA
WP_009908295.1\|106575_107736_-	DUF4382 domain-containing protein	NA	NA	NA	NA
WP_009908294.1\|108149_108374_-	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_165981627.1\|108801_110001_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	3.5e-42	42.2
WP_165981513.1\|110308_111721_+	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA	NA	NA	NA
WP_009893635.1\|111717_112308_+	DUF4390 domain-containing protein	NA	NA	NA	NA
WP_009893633.1\|112309_114718_+	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA
WP_009893632.1\|114718_115405_+	response regulator	NA	NA	NA	NA
WP_165981514.1\|117474_120267_-	hypothetical protein	K4NXL6	Burkholderia_phage	0.0e+00	98.6
WP_165981515.1\|120278_120533_-	hypothetical protein	A4JWQ9	Burkholderia_virus	2.9e-39	97.6
WP_004531070.1\|120529_120889_-	hypothetical protein	K4NXB4	Burkholderia_phage	1.1e-60	100.0
WP_165981516.1\|121075_121435_+	hypothetical protein	A4JWS0	Burkholderia_virus	3.1e-63	99.2
WP_015985032.1\|121442_122540_-	phage late control D family protein	A4JWS1	Burkholderia_virus	8.1e-203	100.0
WP_004552648.1\|123543_123657_-\|tail	GpE family phage tail protein	A0A089FGX3	Burkholderia_phage	5.4e-14	100.0
WP_165981517.1\|123677_123932_+	hypothetical protein	NA	NA	NA	NA
WP_165981518.1\|124671_125991_-	DUF3883 domain-containing protein	NA	NA	NA	NA
WP_165981519.1\|125987_127181_-	DNA (cytosine-5-)-methyltransferase	M1PSQ0	Streptococcus_phage	1.2e-31	32.6
WP_165981520.1\|127193_128813_-	Alw26I/Eco31I/Esp3I family type II restriction adenine-specific DNA-methyltransferase	NA	NA	NA	NA
WP_059649961.1\|128866_129163_-	hypothetical protein	NA	NA	NA	NA
WP_009893630.1\|130235_130970_+	7-cyano-7-deazaguanine synthase QueC	A0A1B0Z0B4	Vibrio_phage	2.1e-50	42.5
WP_009893629.1\|131067_131700_+	7-carboxy-7-deazaguanine synthase	R4TAH8	Halovirus	1.9e-07	34.7
WP_009893627.1\|131719_132172_+	6-carboxytetrahydropterin synthase QueD	A0A088FAL2	Vibrio_phage	1.3e-13	30.1
WP_009893625.1\|132517_133303_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA
WP_025369666.1\|133299_134067_+	sel1 repeat family protein	NA	NA	NA	NA
WP_009893622.1\|134184_135333_-	rod shape-determining protein RodA	NA	NA	NA	NA
WP_009893621.1\|135344_137753_-	penicillin-binding protein 2	NA	NA	NA	NA
WP_009893619.1\|137916_138429_-	rod shape-determining protein MreD	NA	NA	NA	NA
WP_009893617.1\|138425_139505_-	rod shape-determining protein MreC	NA	NA	NA	NA
WP_004189550.1\|139624_140668_-	rod shape-determining protein	NA	NA	NA	NA
WP_009893592.1\|141033_141333_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA	NA	NA	NA
WP_009893590.1\|141459_142950_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA	NA	NA	NA
WP_009893589.1\|142952_144425_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA	NA	NA	NA
WP_009893588.1\|144551_145391_+	polyphosphate kinase	NA	NA	NA	NA
WP_009893587.1\|145422_146193_+	exodeoxyribonuclease III	R4TWA8	Phaeocystis_globosa_virus	2.4e-28	32.7
WP_009893586.1\|146333_147398_-	NAD(P)-dependent alcohol dehydrogenase	A0A2K9L339	Tupanvirus	1.5e-81	46.7
WP_009893585.1\|147616_148561_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_165981521.1\|148788_149829_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_009893581.1\|149818_151132_-	AmpG family muropeptide MFS transporter	NA	NA	NA	NA
WP_009893580.1\|151143_151758_-	methionine biosynthesis protein MetW	NA	NA	NA	NA
WP_009893578.1\|151754_152900_-	homoserine O-acetyltransferase	NA	NA	NA	NA
WP_045599994.1\|153205_153898_-	nucleoid occlusion factor SlmA	NA	NA	NA	NA
WP_165981522.1\|153864_154668_-	pyrimidine 5'-nucleotidase	NA	NA	NA	NA
WP_009893574.1\|154664_155564_-	acetylglutamate kinase	NA	NA	NA	NA
WP_009893570.1\|155889_156147_+	cysteine-rich CWC family protein	NA	NA	NA	NA
WP_009893568.1\|156164_157445_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_009893567.1\|157464_158007_+	response regulator transcription factor	NA	NA	NA	NA
WP_009902157.1\|158432_159776_-\|protease	ATP-dependent protease ATPase subunit HslU	A0A191ZC11	Erwinia_phage	1.0e-37	28.2
WP_009893562.1\|159785_160322_-\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA

DBSCAN-SWA_2

851056 : 861938

Streptococcus_phage(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009892620.1\|851056_853171_-	elongation factor G	E4ZFJ7	Streptococcus_phage	1.2e-56	26.8
WP_011401863.1\|853434_853950_-	DUF192 domain-containing protein	A0A1B1IUW8	uncultured_Mediterranean_phage	1.5e-13	41.2
WP_080511442.1\|854145_854361_-	hypothetical protein	NA	NA	NA	NA
WP_009892615.1\|854621_855200_-	pseudouridine synthase	NA	NA	NA	NA
WP_009892614.1\|855464_856724_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	6.8e-12	63.0
WP_009892613.1\|856885_858481_+	multicopper oxidase family protein	NA	NA	NA	NA
WP_004196460.1\|858592_858796_-	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	6.8e-23	81.8
WP_009892611.1\|859326_859641_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A218MMY6	uncultured_virus	2.6e-13	44.6
WP_009892610.1\|859637_861938_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	5.1e-167	41.9

DBSCAN-SWA_3

1386435 : 1464447

Stx2-converting_phage(30.77%)

integrase,plate,transposase

attL 1381311:1381327|attR 1449411:1449427

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1381311:1381327	attL	NA	NA	NA	NA
WP_165981566.1\|1386435_1387597_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	1.6e-84	53.2
WP_165981567.1\|1387605_1387872_+	hypothetical protein	NA	NA	NA	NA
WP_165981568.1\|1387868_1388963_+	hypothetical protein	NA	NA	NA	NA
WP_011402469.1\|1390546_1390894_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_009891843.1\|1392237_1392495_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_009891839.1\|1392498_1392798_-	hypothetical protein	NA	NA	NA	NA
WP_009891835.1\|1392899_1393709_-	DUF4942 domain-containing protein	NA	NA	NA	NA
WP_009891833.1\|1393764_1394850_-	hypothetical protein	NA	NA	NA	NA
WP_009891830.1\|1394846_1395761_-	hypothetical protein	NA	NA	NA	NA
WP_009891828.1\|1395829_1396045_-	hypothetical protein	NA	NA	NA	NA
WP_011402467.1\|1396056_1397052_-	endonuclease	A6XMH8	Bacillus_virus	1.3e-55	39.5
WP_009891822.1\|1397121_1397322_-	hypothetical protein	NA	NA	NA	NA
WP_009891820.1\|1397318_1398287_-	DUF932 domain-containing protein	A0A0H4INH5	Stenotrophomonas_phage	3.1e-57	42.0
WP_059844718.1\|1398390_1398618_-	hypothetical protein	NA	NA	NA	NA
WP_165981569.1\|1399545_1408989_+	contact-dependent inhibition toxin BcpA	A0A0R6PJK4	Moraxella_phage	9.9e-31	31.4
WP_011402464.1\|1408985_1409798_+	contact-dependent inhibition immunity protein BcpI	NA	NA	NA	NA
WP_165981570.1\|1409825_1410050_+	CDI system lipoprotein BcpO	NA	NA	NA	NA
WP_165981571.1\|1410074_1411811_+	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
WP_009891812.1\|1412235_1414590_+	AAA family ATPase	NA	NA	NA	NA
WP_009891810.1\|1414586_1416506_+	ATP-dependent helicase	NA	NA	NA	NA
WP_009891806.1\|1416676_1417147_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_009891805.1\|1417421_1418861_-\|integrase	integrase family protein	NA	NA	NA	NA
WP_025369441.1\|1419904_1420810_+	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	1.7e-129	75.1
WP_059844701.1\|1420942_1422229_+	MFS transporter	Q6JIH2	Burkholderia_virus	3.9e-172	72.0
WP_009891799.1\|1422545_1422881_+	H-NS histone family protein	NA	NA	NA	NA
WP_009891798.1\|1423184_1424663_-	PHB depolymerase family esterase	NA	NA	NA	NA
WP_009910381.1\|1425423_1425642_-	hypothetical protein	NA	NA	NA	NA
WP_009910382.1\|1427134_1428985_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_043036944.1\|1429013_1430441_-	hypothetical protein	NA	NA	NA	NA
WP_009891791.1\|1430464_1430731_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_025369438.1\|1431256_1434055_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	1.5e-27	24.1
WP_009891787.1\|1434057_1434891_+	DUF4123 domain-containing protein	NA	NA	NA	NA
WP_165981629.1\|1435027_1435585_+	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_011402458.1\|1435581_1436181_+	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_038712723.1\|1436177_1438586_+	DUF2235 domain-containing protein	NA	NA	NA	NA
WP_025369435.1\|1438713_1439271_+	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_011402455.1\|1439267_1439867_+	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_165981572.1\|1439863_1442266_+	DUF2235 domain-containing protein	NA	NA	NA	NA
WP_009891777.1\|1442374_1445710_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_009891776.1\|1446661_1446994_+	hypothetical protein	NA	NA	NA	NA
WP_011402452.1\|1447011_1447317_+	hypothetical protein	NA	NA	NA	NA
WP_025369432.1\|1447329_1450158_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	2.6e-27	24.1
1449411:1449427	attR	NA	NA	NA	NA
WP_025369431.1\|1450161_1451178_+	hypothetical protein	NA	NA	NA	NA
WP_165981573.1\|1451180_1454204_+	Fis family transcriptional regulator	NA	NA	NA	NA
WP_004556892.1\|1454640_1454934_+	hypothetical protein	NA	NA	NA	NA
WP_080511660.1\|1455876_1456569_+	hypothetical protein	NA	NA	NA	NA
WP_009951519.1\|1457141_1457309_-	hypothetical protein	A0A0P0ZBS5	Stx2-converting_phage	9.5e-07	50.0
WP_009891747.1\|1457523_1457799_+	hypothetical protein	NA	NA	NA	NA
WP_080511659.1\|1458064_1458511_+	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA
WP_009888727.1\|1458695_1459103_+\|transposase	transposase	A0A0P0ZBP6	Stx2-converting_phage	3.1e-14	38.2
WP_009889515.1\|1459099_1459447_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.1e-40	72.0
WP_009889500.1\|1459476_1461048_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	6.7e-150	53.8
WP_156530037.1\|1462138_1462909_-	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	1.4e-36	37.1
WP_165981574.1\|1462923_1464447_-\|transposase	IS21 family transposase	NA	NA	NA	NA

DBSCAN-SWA_4

2148483 : 2156208

Ralstonia_virus(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009890596.1\|2148483_2149593_+	class II histone deacetylase	A0A2K9L2T7	Tupanvirus	1.2e-39	32.7
WP_009890595.1\|2149796_2150420_+	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	6.3e-19	32.6
WP_011402264.1\|2150657_2151119_-	MEKHLA domain-containing protein	NA	NA	NA	NA
WP_009890590.1\|2151322_2151781_+	hypothetical protein	NA	NA	NA	NA
WP_009890589.1\|2151796_2152198_+	hypothetical protein	NA	NA	NA	NA
WP_009894408.1\|2152259_2152685_+	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	4.9e-15	49.4
WP_025370026.1\|2152684_2153191_+	DUF4123 domain-containing protein	A4PE24	Ralstonia_virus	1.0e-19	40.1
WP_009894404.1\|2153183_2153657_+	hypothetical protein	NA	NA	NA	NA
WP_009891862.1\|2153752_2155012_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.5e-43	44.4
WP_165981593.1\|2155063_2155498_+	hypothetical protein	NA	NA	NA	NA
WP_025369324.1\|2155500_2156208_+	hypothetical protein	A4PE26	Ralstonia_virus	1.4e-35	42.5

DBSCAN-SWA_5

2654082 : 2662799

Acanthocystis_turfacea_chlorella_virus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009908916.1\|2654082_2654994_+	alpha/beta hydrolase	A7K906	Acanthocystis_turfacea_chlorella_virus	4.2e-11	24.6
WP_009889864.1\|2655329_2656253_-	histone deacetylase family protein	A0A2K9KZC4	Tupanvirus	3.2e-43	36.2
WP_009889862.1\|2656431_2657673_+	lytic murein transglycosylase B	NA	NA	NA	NA
WP_009904404.1\|2657767_2658670_-	cysteine synthase CysM	A0A1X9I5F1	Streptococcus_phage	4.3e-53	39.9
WP_009889858.1\|2659004_2659322_-	competence protein ComE	NA	NA	NA	NA
WP_009908914.1\|2659393_2660386_-	ADP-glyceromanno-heptose 6-epimerase	R9S880	Prochlorococcus_phage	9.1e-28	30.9
WP_080511617.1\|2660443_2661367_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	A0A2H4N7X4	Lake_Baikal_phage	1.3e-15	27.9
WP_009908912.1\|2661398_2662799_-	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	1.1e-79	38.7

DBSCAN-SWA_6

2770797 : 2777195

Stx2-converting_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059844922.1\|2770797_2771934_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	7.4e-42	32.9
WP_009889675.1\|2771948_2772578_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	2.4e-26	36.2
WP_009889673.1\|2772621_2773005_-	type II toxin-antitoxin system death-on-curing family toxin	A0A1B3AYM0	Gordonia_phage	9.9e-07	43.6
WP_009889671.1\|2773001_2773229_-	transcriptional regulator	NA	NA	NA	NA
WP_080713227.1\|2773367_2773595_+	helicase	NA	NA	NA	NA
WP_009891862.1\|2774625_2775885_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.5e-43	44.4
WP_009888727.1\|2776161_2776569_+\|transposase	transposase	A0A0P0ZBP6	Stx2-converting_phage	3.1e-14	38.2
WP_107645277.1\|2776565_2777195_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	1.5e-31	69.6

DBSCAN-SWA_7

3010074 : 3019305

unidentified_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009889266.1\|3010074_3011619_+	polynucleotide adenylyltransferase PcnB	H7BUW3	unidentified_phage	3.3e-24	31.2
WP_009889265.1\|3011654_3012182_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_009889263.1\|3012178_3012862_+	deoxynucleoside kinase	A0A249XZR7	Enterococcus_phage	3.3e-05	26.0
WP_025369782.1\|3012926_3013742_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	4.4e-36	32.9
WP_009889260.1\|3013917_3015927_-	bifunctional anthranilate synthase component I family protein/class IV aminotransferase	S4VT78	Pandoravirus	1.7e-52	35.2
WP_009889258.1\|3015958_3017089_-	molecular chaperone DnaJ	E3T4P7	Cafeteria_roenbergensis_virus	1.8e-24	38.0
WP_009889255.1\|3017352_3019305_-	molecular chaperone DnaK	A0A1V0SH73	Hokovirus	1.2e-148	49.5

DBSCAN-SWA_8

3304284 : 3355367

Pseudomonas_phage(33.33%)

tRNA,protease,plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009888666.1\|3304284_3305583_+\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_009888664.1\|3305651_3306734_+	peptide chain release factor 1	A0A0S4KWG0	Pseudomonas_phage	6.7e-08	46.6
WP_009888662.1\|3306759_3307617_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_009888661.1\|3307696_3308005_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA
WP_009888659.1\|3308018_3308615_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA
WP_009888656.1\|3308870_3309659_+	dioxygenase	NA	NA	NA	NA
WP_009888654.1\|3309815_3311417_-	APC family permease	NA	NA	NA	NA
WP_004196837.1\|3311851_3312055_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	6.3e-21	73.1
WP_009888639.1\|3312232_3313495_-	Hsp70 family protein	NA	NA	NA	NA
WP_009888637.1\|3313711_3314317_-	nitroreductase family protein	NA	NA	NA	NA
WP_043036354.1\|3314628_3315912_-	MFS transporter	NA	NA	NA	NA
WP_009888634.1\|3316070_3316718_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_009888632.1\|3317038_3317644_+	DUF1415 domain-containing protein	NA	NA	NA	NA
WP_009888631.1\|3317704_3318601_-	SAM-dependent methyltransferase	NA	NA	NA	NA
WP_009888630.1\|3318732_3319869_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_009888629.1\|3320558_3321065_-	hypothetical protein	NA	NA	NA	NA
WP_043288838.1\|3321667_3323818_+	peptidase M1	A0A0P0IY26	Acinetobacter_phage	1.3e-47	25.7
WP_154659998.1\|3324433_3324775_+	hypothetical protein	NA	NA	NA	NA
WP_009888623.1\|3324861_3325110_+	hypothetical protein	NA	NA	NA	NA
WP_009888621.1\|3325211_3325433_+	hypothetical protein	NA	NA	NA	NA
WP_009888619.1\|3326083_3327352_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_009888617.1\|3327366_3329622_+	peptidase domain-containing ABC transporter	A0A2R8FG22	Brazilian_cedratvirus	2.3e-10	31.9
WP_009888616.1\|3329618_3331067_+	TolC family protein	NA	NA	NA	NA
WP_009910677.1\|3331263_3332229_-	hypothetical protein	NA	NA	NA	NA
WP_025369750.1\|3332354_3333206_+	M15 family metallopeptidase	NA	NA	NA	NA
WP_011402549.1\|3333491_3337397_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_009888606.1\|3337393_3338383_+	type VI secretion system-associated protein TagF	NA	NA	NA	NA
WP_009888604.1\|3338387_3339323_+	OmpA family protein	NA	NA	NA	NA
WP_009888602.1\|3339522_3340653_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_009910486.1\|3340738_3343402_-	type VI secretion system ATPase TssH	A0A223W0B1	Agrobacterium_phage	1.8e-91	31.2
WP_009888601.1\|3343435_3344536_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_009888599.1\|3344499_3346338_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_009888597.1\|3346418_3346901_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_009906860.1\|3346958_3347462_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_009888594.1\|3347534_3349025_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_009888592.1\|3349041_3349560_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_043036367.1\|3349596_3350286_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_025404121.1\|3350659_3351274_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_009888581.1\|3351382_3352729_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_009888580.1\|3352725_3353511_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_158338514.1\|3354144_3354273_+\|transposase	transposase	NA	NA	NA	NA
WP_009909975.1\|3354854_3355367_-\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	1.1e-21	52.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP050021

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP050020

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection