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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP050009 Citrobacter sp. Y3 chromosome, complete genome 2 crisprs RT,cas3,PD-DExK,WYL,DEDDh,DinG,csa3 0 1 9 0
NZ_CP050010 Citrobacter sp. Y3 plasmid unnamed1, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP050011 Citrobacter sp. Y3 plasmid unnamed2, complete sequence 1 crisprs NA 0 1 1 0

Results visualization

1. NZ_CP050009
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP050009_1 869617-869711 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP050009_2 2388192-2388315 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP050009_2 2.1|2388235|38|NZ_CP050009|CRISPRCasFinder 2388235-2388272 38 NZ_CP043437 Enterobacter sp. LU1 plasmid unnamed 113727-113764 2 0.947

1. spacer 2.1|2388235|38|NZ_CP050009|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaaaatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.******.*****************************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 580713 : 588392 10 Thermobifida_phage(16.67%) NA NA
DBSCAN-SWA_2 1278035 : 1285975 6 Enterobacteria_phage(33.33%) transposase,integrase attL 1268187:1268201|attR 1288949:1288963
DBSCAN-SWA_3 2018902 : 2074782 63 uncultured_Caudovirales_phage(24.24%) protease,tail,holin,terminase,integrase attL 2034123:2034182|attR 2069727:2069793
DBSCAN-SWA_4 2826810 : 2944106 112 Escherichia_phage(34.48%) transposase,tRNA,protease,integrase attL 2859892:2859951|attR 2916147:2916967
DBSCAN-SWA_5 3327944 : 3336183 8 Enterobacteria_phage(42.86%) NA NA
DBSCAN-SWA_6 3393402 : 3401825 9 Enterobacteria_phage(66.67%) tRNA NA
DBSCAN-SWA_7 3605934 : 3693948 103 Enterobacteria_phage(33.33%) protease,capsid,tail,transposase,tRNA,holin,portal,terminase,head,integrase attL 3650279:3650297|attR 3694144:3694162
DBSCAN-SWA_8 3907507 : 3972958 86 Salmonella_phage(33.87%) protease,capsid,tail,transposase,tRNA,holin,portal,terminase,head,integrase attL 3895901:3895917|attR 3970540:3970556
DBSCAN-SWA_9 4949669 : 5006752 67 Enterobacteria_phage(39.53%) protease,capsid,tail,holin,plate,portal,terminase,head,integrase attL 4971972:4972013|attR 5003966:5004007
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP050011
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP050011_1 27524-27658 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP050011_1 1.1|27572|39|NZ_CP050011|CRISPRCasFinder 27572-27610 39 NZ_CP035636 Enterobacter cloacae strain EN3600 plasmid unnamed4, complete sequence 100226-100264 0 1.0
NZ_CP050011_1 1.1|27572|39|NZ_CP050011|CRISPRCasFinder 27572-27610 39 NZ_CP017182 Enterobacter kobei strain DSM 13645 plasmid pDSMZ13645, complete sequence 1315-1353 0 1.0
NZ_CP050011_1 1.1|27572|39|NZ_CP050011|CRISPRCasFinder 27572-27610 39 NZ_CP017182 Enterobacter kobei strain DSM 13645 plasmid pDSMZ13645, complete sequence 1402-1440 0 1.0
NZ_CP050011_1 1.1|27572|39|NZ_CP050011|CRISPRCasFinder 27572-27610 39 NZ_CP031569 Enterobacter hormaechei strain 2013_1a plasmid pIncFIB-1301491, complete sequence 7815-7853 0 1.0
NZ_CP050011_1 1.1|27572|39|NZ_CP050011|CRISPRCasFinder 27572-27610 39 NZ_CP050011 Citrobacter sp. Y3 plasmid unnamed2, complete sequence 27572-27610 0 1.0
NZ_CP050011_1 1.1|27572|39|NZ_CP050011|CRISPRCasFinder 27572-27610 39 NZ_CP019840 Enterobacter roggenkampii strain R11 plasmid pASM1, complete sequence 70340-70378 0 1.0
NZ_CP050011_1 1.1|27572|39|NZ_CP050011|CRISPRCasFinder 27572-27610 39 NZ_CP022149 Enterobacter roggenkampii strain 704SK10 plasmid p704SK10_1, complete sequence 50338-50376 0 1.0
NZ_CP050011_1 1.1|27572|39|NZ_CP050011|CRISPRCasFinder 27572-27610 39 NZ_CP009855 UNVERIFIED_ORG: Enterobacter cloacae strain ECNIH5 plasmid pENT-22e, complete sequence 14593-14631 0 1.0
NZ_CP050011_1 1.1|27572|39|NZ_CP050011|CRISPRCasFinder 27572-27610 39 NZ_CP008907 Enterobacter hormaechei subsp. hoffmannii ECR091 plasmid pENT-4bd, complete sequence 83191-83229 0 1.0
NZ_CP050011_1 1.1|27572|39|NZ_CP050011|CRISPRCasFinder 27572-27610 39 NZ_CP026851 UNVERIFIED_ORG: Enterobacter cloacae strain AR_0072 plasmid unnamed1 65584-65622 0 1.0
NZ_CP050011_1 1.1|27572|39|NZ_CP050011|CRISPRCasFinder 27572-27610 39 NZ_LT991956 Enterobacter hormaechei subsp. steigerwaltii isolate C309 plasmid pC309-p2 52487-52525 0 1.0
NZ_CP050011_1 1.1|27572|39|NZ_CP050011|CRISPRCasFinder 27572-27610 39 NZ_CP029719 UNVERIFIED_ORG: Enterobacter cloacae strain AR_0154 plasmid unnamed1, complete sequence 1341-1379 0 1.0
NZ_CP050011_1 1.1|27572|39|NZ_CP050011|CRISPRCasFinder 27572-27610 39 NZ_CP012428 Klebsiella pneumoniae strain KP5 plasmid pSg1-2, complete sequence 20127-20165 1 0.974
NZ_CP050011_1 1.1|27572|39|NZ_CP050011|CRISPRCasFinder 27572-27610 39 NC_014107 Enterobacter cloacae subsp. cloacae ATCC 13047 plasmid pECL_A, complete sequence 48095-48133 1 0.974
NZ_CP050011_1 1.1|27572|39|NZ_CP050011|CRISPRCasFinder 27572-27610 39 NZ_CP046273 Enterobacter hormaechei strain E70 plasmid pE70-sul2, complete sequence 40032-40070 1 0.974
NZ_CP050011_1 1.1|27572|39|NZ_CP050011|CRISPRCasFinder 27572-27610 39 NZ_CP012169 Enterobacter hormaechei subsp. steigerwaltii strain 34998 plasmid p34998-210.894kb, complete sequence 40032-40070 1 0.974
NZ_CP050011_1 1.1|27572|39|NZ_CP050011|CRISPRCasFinder 27572-27610 39 NZ_CP042541 Enterobacter hormaechei strain C4 plasmid pC4_001, complete sequence 40032-40070 1 0.974
NZ_CP050011_1 1.1|27572|39|NZ_CP050011|CRISPRCasFinder 27572-27610 39 NZ_CP031723 Enterobacter hormaechei strain WCHEH020038 plasmid p2_020038, complete sequence 50311-50349 1 0.974
NZ_CP050011_1 1.1|27572|39|NZ_CP050011|CRISPRCasFinder 27572-27610 39 NZ_CP042567 Enterobacter hormaechei strain C44 plasmid pC44_001, complete sequence 40032-40070 1 0.974
NZ_CP050011_1 1.1|27572|39|NZ_CP050011|CRISPRCasFinder 27572-27610 39 NZ_CP039454 Enterobacter bugandensis strain 220 plasmid pSurvcare220, complete sequence 72766-72804 2 0.949

1. spacer 1.1|27572|39|NZ_CP050011|CRISPRCasFinder matches to NZ_CP035636 (Enterobacter cloacae strain EN3600 plasmid unnamed4, complete sequence) position: , mismatch: 0, identity: 1.0

ggcggggttgaaggatgagttctgacacgcaagtaggag	CRISPR spacer
ggcggggttgaaggatgagttctgacacgcaagtaggag	Protospacer
***************************************

2. spacer 1.1|27572|39|NZ_CP050011|CRISPRCasFinder matches to NZ_CP017182 (Enterobacter kobei strain DSM 13645 plasmid pDSMZ13645, complete sequence) position: , mismatch: 0, identity: 1.0

ggcggggttgaaggatgagttctgacacgcaagtaggag	CRISPR spacer
ggcggggttgaaggatgagttctgacacgcaagtaggag	Protospacer
***************************************

3. spacer 1.1|27572|39|NZ_CP050011|CRISPRCasFinder matches to NZ_CP017182 (Enterobacter kobei strain DSM 13645 plasmid pDSMZ13645, complete sequence) position: , mismatch: 0, identity: 1.0

ggcggggttgaaggatgagttctgacacgcaagtaggag	CRISPR spacer
ggcggggttgaaggatgagttctgacacgcaagtaggag	Protospacer
***************************************

4. spacer 1.1|27572|39|NZ_CP050011|CRISPRCasFinder matches to NZ_CP031569 (Enterobacter hormaechei strain 2013_1a plasmid pIncFIB-1301491, complete sequence) position: , mismatch: 0, identity: 1.0

ggcggggttgaaggatgagttctgacacgcaagtaggag	CRISPR spacer
ggcggggttgaaggatgagttctgacacgcaagtaggag	Protospacer
***************************************

5. spacer 1.1|27572|39|NZ_CP050011|CRISPRCasFinder matches to NZ_CP050011 (Citrobacter sp. Y3 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

ggcggggttgaaggatgagttctgacacgcaagtaggag	CRISPR spacer
ggcggggttgaaggatgagttctgacacgcaagtaggag	Protospacer
***************************************

6. spacer 1.1|27572|39|NZ_CP050011|CRISPRCasFinder matches to NZ_CP019840 (Enterobacter roggenkampii strain R11 plasmid pASM1, complete sequence) position: , mismatch: 0, identity: 1.0

ggcggggttgaaggatgagttctgacacgcaagtaggag	CRISPR spacer
ggcggggttgaaggatgagttctgacacgcaagtaggag	Protospacer
***************************************

7. spacer 1.1|27572|39|NZ_CP050011|CRISPRCasFinder matches to NZ_CP022149 (Enterobacter roggenkampii strain 704SK10 plasmid p704SK10_1, complete sequence) position: , mismatch: 0, identity: 1.0

ggcggggttgaaggatgagttctgacacgcaagtaggag	CRISPR spacer
ggcggggttgaaggatgagttctgacacgcaagtaggag	Protospacer
***************************************

8. spacer 1.1|27572|39|NZ_CP050011|CRISPRCasFinder matches to NZ_CP009855 (UNVERIFIED_ORG: Enterobacter cloacae strain ECNIH5 plasmid pENT-22e, complete sequence) position: , mismatch: 0, identity: 1.0

ggcggggttgaaggatgagttctgacacgcaagtaggag	CRISPR spacer
ggcggggttgaaggatgagttctgacacgcaagtaggag	Protospacer
***************************************

9. spacer 1.1|27572|39|NZ_CP050011|CRISPRCasFinder matches to NZ_CP008907 (Enterobacter hormaechei subsp. hoffmannii ECR091 plasmid pENT-4bd, complete sequence) position: , mismatch: 0, identity: 1.0

ggcggggttgaaggatgagttctgacacgcaagtaggag	CRISPR spacer
ggcggggttgaaggatgagttctgacacgcaagtaggag	Protospacer
***************************************

10. spacer 1.1|27572|39|NZ_CP050011|CRISPRCasFinder matches to NZ_CP026851 (UNVERIFIED_ORG: Enterobacter cloacae strain AR_0072 plasmid unnamed1) position: , mismatch: 0, identity: 1.0

ggcggggttgaaggatgagttctgacacgcaagtaggag	CRISPR spacer
ggcggggttgaaggatgagttctgacacgcaagtaggag	Protospacer
***************************************

11. spacer 1.1|27572|39|NZ_CP050011|CRISPRCasFinder matches to NZ_LT991956 (Enterobacter hormaechei subsp. steigerwaltii isolate C309 plasmid pC309-p2) position: , mismatch: 0, identity: 1.0

ggcggggttgaaggatgagttctgacacgcaagtaggag	CRISPR spacer
ggcggggttgaaggatgagttctgacacgcaagtaggag	Protospacer
***************************************

12. spacer 1.1|27572|39|NZ_CP050011|CRISPRCasFinder matches to NZ_CP029719 (UNVERIFIED_ORG: Enterobacter cloacae strain AR_0154 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

ggcggggttgaaggatgagttctgacacgcaagtaggag	CRISPR spacer
ggcggggttgaaggatgagttctgacacgcaagtaggag	Protospacer
***************************************

13. spacer 1.1|27572|39|NZ_CP050011|CRISPRCasFinder matches to NZ_CP012428 (Klebsiella pneumoniae strain KP5 plasmid pSg1-2, complete sequence) position: , mismatch: 1, identity: 0.974

ggcggggttgaaggatgagttctgacacgcaagtaggag	CRISPR spacer
gacggggttgaaggatgagttctgacacgcaagtaggag	Protospacer
*.*************************************

14. spacer 1.1|27572|39|NZ_CP050011|CRISPRCasFinder matches to NC_014107 (Enterobacter cloacae subsp. cloacae ATCC 13047 plasmid pECL_A, complete sequence) position: , mismatch: 1, identity: 0.974

ggcggggttgaaggatgagttctgacacgcaagtaggag	CRISPR spacer
gacggggttgaaggatgagttctgacacgcaagtaggag	Protospacer
*.*************************************

15. spacer 1.1|27572|39|NZ_CP050011|CRISPRCasFinder matches to NZ_CP046273 (Enterobacter hormaechei strain E70 plasmid pE70-sul2, complete sequence) position: , mismatch: 1, identity: 0.974

ggcggggttgaaggatgagttctgacacgcaagtaggag	CRISPR spacer
gacggggttgaaggatgagttctgacacgcaagtaggag	Protospacer
*.*************************************

16. spacer 1.1|27572|39|NZ_CP050011|CRISPRCasFinder matches to NZ_CP012169 (Enterobacter hormaechei subsp. steigerwaltii strain 34998 plasmid p34998-210.894kb, complete sequence) position: , mismatch: 1, identity: 0.974

ggcggggttgaaggatgagttctgacacgcaagtaggag	CRISPR spacer
gacggggttgaaggatgagttctgacacgcaagtaggag	Protospacer
*.*************************************

17. spacer 1.1|27572|39|NZ_CP050011|CRISPRCasFinder matches to NZ_CP042541 (Enterobacter hormaechei strain C4 plasmid pC4_001, complete sequence) position: , mismatch: 1, identity: 0.974

ggcggggttgaaggatgagttctgacacgcaagtaggag	CRISPR spacer
gacggggttgaaggatgagttctgacacgcaagtaggag	Protospacer
*.*************************************

18. spacer 1.1|27572|39|NZ_CP050011|CRISPRCasFinder matches to NZ_CP031723 (Enterobacter hormaechei strain WCHEH020038 plasmid p2_020038, complete sequence) position: , mismatch: 1, identity: 0.974

ggcggggttgaaggatgagttctgacacgcaagtaggag	CRISPR spacer
gacggggttgaaggatgagttctgacacgcaagtaggag	Protospacer
*.*************************************

19. spacer 1.1|27572|39|NZ_CP050011|CRISPRCasFinder matches to NZ_CP042567 (Enterobacter hormaechei strain C44 plasmid pC44_001, complete sequence) position: , mismatch: 1, identity: 0.974

ggcggggttgaaggatgagttctgacacgcaagtaggag	CRISPR spacer
gacggggttgaaggatgagttctgacacgcaagtaggag	Protospacer
*.*************************************

20. spacer 1.1|27572|39|NZ_CP050011|CRISPRCasFinder matches to NZ_CP039454 (Enterobacter bugandensis strain 220 plasmid pSurvcare220, complete sequence) position: , mismatch: 2, identity: 0.949

ggcggggttgaaggatgagttctgacacgcaagtaggag	CRISPR spacer
ggcggggttgacggatgagttctgaaacgcaagtaggag	Protospacer
*********** ************* *************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 32581 : 81417 42 Shigella_phage(28.57%) integrase,transposase attL 53801:53817|attR 81245:81261
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage