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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP050079 Pediococcus acidilactici strain PMC48 chromosome, complete genome 3 crisprs cas1,cas2,csn2,DEDDh,DinG,cas3,csa3 0 2 6 0

Results visualization

1. NZ_CP050079
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP050079_1 421768-422067 TypeII-A NA
4 spacers
csn2,cas2,cas1

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP050079_2 620364-620467 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP050079_3 1482276-1482432 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP050079_3 3.1|1482313|24|NZ_CP050079|PILER-CR 1482313-1482336 24 NC_031280 Acinetobacter phage vB_AbaM_phiAbaA1, complete genome 47059-47082 3 0.875
NZ_CP050079_1 1.2|421870|30|NZ_CP050079|PILER-CR,CRISPRCasFinder,CRT 421870-421899 30 MF360958 Salicola phage SCTP-2, complete genome 110995-111024 6 0.8
NZ_CP050079_1 1.2|421870|30|NZ_CP050079|PILER-CR,CRISPRCasFinder,CRT 421870-421899 30 NC_010632 Nostoc punctiforme PCC 73102 plasmid pNPUN02, complete sequence 29954-29983 7 0.767
NZ_CP050079_1 1.2|421870|30|NZ_CP050079|PILER-CR,CRISPRCasFinder,CRT 421870-421899 30 NC_015432 Staphylococcus saprophyticus subsp. saprophyticus MS1146 plasmid pSSAP1, complete sequence 32213-32242 8 0.733
NZ_CP050079_1 1.2|421870|30|NZ_CP050079|PILER-CR,CRISPRCasFinder,CRT 421870-421899 30 MG557618 Staphylococcus phage HSA30, complete genome 4295-4324 9 0.7
NZ_CP050079_1 1.2|421870|30|NZ_CP050079|PILER-CR,CRISPRCasFinder,CRT 421870-421899 30 KY779849 Staphylococcus phage qdsa002, complete genome 49912-49941 9 0.7
NZ_CP050079_1 1.2|421870|30|NZ_CP050079|PILER-CR,CRISPRCasFinder,CRT 421870-421899 30 MF001365 Staphylococcus phage SA3, partial genome 19388-19417 9 0.7
NZ_CP050079_1 1.2|421870|30|NZ_CP050079|PILER-CR,CRISPRCasFinder,CRT 421870-421899 30 MH159197 Staphylococcus phage VB_SavM_JYL01, complete genome 19479-19508 9 0.7
NZ_CP050079_1 1.2|421870|30|NZ_CP050079|PILER-CR,CRISPRCasFinder,CRT 421870-421899 30 MK250904 Staphylococcus phage VB-SavM-JYL02, complete genome 18051-18080 9 0.7
NZ_CP050079_1 1.2|421870|30|NZ_CP050079|PILER-CR,CRISPRCasFinder,CRT 421870-421899 30 MT554104 Staphylococcus phage ESa1, complete genome 47035-47064 9 0.7
NZ_CP050079_1 1.2|421870|30|NZ_CP050079|PILER-CR,CRISPRCasFinder,CRT 421870-421899 30 NC_019448 Staphylococcus phage GH15, complete genome 46544-46573 9 0.7
NZ_CP050079_1 1.2|421870|30|NZ_CP050079|PILER-CR,CRISPRCasFinder,CRT 421870-421899 30 MT786458 Staphylococcus phage vB_SauH_SAP1, complete genome 141636-141665 9 0.7
NZ_CP050079_1 1.2|421870|30|NZ_CP050079|PILER-CR,CRISPRCasFinder,CRT 421870-421899 30 MN304941 Staphylococcus phage vB_SauH_IME522, complete genome 133105-133134 9 0.7

1. spacer 3.1|1482313|24|NZ_CP050079|PILER-CR matches to NC_031280 (Acinetobacter phage vB_AbaM_phiAbaA1, complete genome) position: , mismatch: 3, identity: 0.875

tcaacggttcggatcttgccaatc	CRISPR spacer
tcaacggttcagatcgtgccaatg	Protospacer
**********.**** ******* 

2. spacer 1.2|421870|30|NZ_CP050079|PILER-CR,CRISPRCasFinder,CRT matches to MF360958 (Salicola phage SCTP-2, complete genome) position: , mismatch: 6, identity: 0.8

tcgaacaactaaatgaaaaacctaagcgaa	CRISPR spacer
taaaacaacttaatgaaaaatctaagaaaa	Protospacer
* .******* *********.***** .**

3. spacer 1.2|421870|30|NZ_CP050079|PILER-CR,CRISPRCasFinder,CRT matches to NC_010632 (Nostoc punctiforme PCC 73102 plasmid pNPUN02, complete sequence) position: , mismatch: 7, identity: 0.767

tcgaacaactaaatgaaaaacctaagcgaa	CRISPR spacer
cagaactactaaaagaaaaacctaaccaga	Protospacer
. **** ****** *********** *..*

4. spacer 1.2|421870|30|NZ_CP050079|PILER-CR,CRISPRCasFinder,CRT matches to NC_015432 (Staphylococcus saprophyticus subsp. saprophyticus MS1146 plasmid pSSAP1, complete sequence) position: , mismatch: 8, identity: 0.733

tcgaacaactaaatgaaaaacctaagcgaa	CRISPR spacer
gattacaacaaaatgaaaaacctaaacgtg	Protospacer
    ***** ***************.** .

5. spacer 1.2|421870|30|NZ_CP050079|PILER-CR,CRISPRCasFinder,CRT matches to MG557618 (Staphylococcus phage HSA30, complete genome) position: , mismatch: 9, identity: 0.7

tcgaacaactaaatgaaaaacctaagcgaa	CRISPR spacer
ctgaacaacctaatgaaaaacctaatgagg	Protospacer
..*******. **************  ...

6. spacer 1.2|421870|30|NZ_CP050079|PILER-CR,CRISPRCasFinder,CRT matches to KY779849 (Staphylococcus phage qdsa002, complete genome) position: , mismatch: 9, identity: 0.7

tcgaacaactaaatgaaaaacctaagcgaa	CRISPR spacer
ctgaacaacctaatgaaaaacctaatgagg	Protospacer
..*******. **************  ...

7. spacer 1.2|421870|30|NZ_CP050079|PILER-CR,CRISPRCasFinder,CRT matches to MF001365 (Staphylococcus phage SA3, partial genome) position: , mismatch: 9, identity: 0.7

tcgaacaactaaatgaaaaacctaagcgaa	CRISPR spacer
ctgaacaacctaatgaaaaacctaatgagg	Protospacer
..*******. **************  ...

8. spacer 1.2|421870|30|NZ_CP050079|PILER-CR,CRISPRCasFinder,CRT matches to MH159197 (Staphylococcus phage VB_SavM_JYL01, complete genome) position: , mismatch: 9, identity: 0.7

tcgaacaactaaatgaaaaacctaagcgaa	CRISPR spacer
ctgaacaacctaatgaaaaacctaatgagg	Protospacer
..*******. **************  ...

9. spacer 1.2|421870|30|NZ_CP050079|PILER-CR,CRISPRCasFinder,CRT matches to MK250904 (Staphylococcus phage VB-SavM-JYL02, complete genome) position: , mismatch: 9, identity: 0.7

tcgaacaactaaatgaaaaacctaagcgaa	CRISPR spacer
ctgaacaacctaatgaaaaacctaatgagg	Protospacer
..*******. **************  ...

10. spacer 1.2|421870|30|NZ_CP050079|PILER-CR,CRISPRCasFinder,CRT matches to MT554104 (Staphylococcus phage ESa1, complete genome) position: , mismatch: 9, identity: 0.7

tcgaacaactaaatgaaaaacctaagcgaa	CRISPR spacer
ctgaacaacctaatgaaaaacctaatgagg	Protospacer
..*******. **************  ...

11. spacer 1.2|421870|30|NZ_CP050079|PILER-CR,CRISPRCasFinder,CRT matches to NC_019448 (Staphylococcus phage GH15, complete genome) position: , mismatch: 9, identity: 0.7

tcgaacaactaaatgaaaaacctaagcgaa	CRISPR spacer
ctgaacaacctaatgaaaaacctaatgagg	Protospacer
..*******. **************  ...

12. spacer 1.2|421870|30|NZ_CP050079|PILER-CR,CRISPRCasFinder,CRT matches to MT786458 (Staphylococcus phage vB_SauH_SAP1, complete genome) position: , mismatch: 9, identity: 0.7

tcgaacaactaaatgaaaaacctaagcgaa	CRISPR spacer
ctgaacaacctaatgaaaaacctaatgagg	Protospacer
..*******. **************  ...

13. spacer 1.2|421870|30|NZ_CP050079|PILER-CR,CRISPRCasFinder,CRT matches to MN304941 (Staphylococcus phage vB_SauH_IME522, complete genome) position: , mismatch: 9, identity: 0.7

tcgaacaactaaatgaaaaacctaagcgaa	CRISPR spacer
ctgaacaacctaatgaaaaacctaatgagg	Protospacer
..*******. **************  ...

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 435881 : 443555 7 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_2 627825 : 694109 74 Lactobacillus_phage(76.32%) integrase,head,tRNA,terminase,holin,capsid,portal,protease,tail attL 626882:626898|attR 684279:684295
DBSCAN-SWA_3 917698 : 924883 18 Lactobacillus_phage(50.0%) NA NA
DBSCAN-SWA_4 1091996 : 1100557 8 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_5 1334304 : 1343091 9 Bacillus_virus(14.29%) NA NA
DBSCAN-SWA_6 1482979 : 1522071 40 Erysipelothrix_phage(82.61%) head,terminase,holin,capsid,portal,protease,tail NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage