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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP050062 Stenotrophomonas rhizophila strain JC1 chromosome, complete genome 5 crisprs DEDDh,csa3,WYL,cas3,Cas9_archaeal,DinG 2 2 4 0

Results visualization

1. NZ_CP050062
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP050062_1 395943-396039 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP050062_2 472770-472955 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP050062_3 643916-644023 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP050062_4 2783097-2783202 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP050062_5 3172192-3172383 Orphan NA
4 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP050062_2 2.1|472823|18|NZ_CP050062|PILER-CR 472823-472840 18 NZ_CP050062.1 472420-472437 0 1.0
NZ_CP050062_2 2.2|472894|39|NZ_CP050062|PILER-CR 472894-472932 39 NZ_CP050062.1 472328-472366 0 1.0
NZ_CP050062_2 2.2|472894|39|NZ_CP050062|PILER-CR 472894-472932 39 NZ_CP050062.1 472731-472769 0 1.0
NZ_CP050062_2 2.2|472894|39|NZ_CP050062|PILER-CR 472894-472932 39 NZ_CP050062.1 472998-473036 0 1.0
NZ_CP050062_2 2.1|472823|18|NZ_CP050062|PILER-CR 472823-472840 18 NZ_CP050062.1 472687-472704 1 0.944
NZ_CP050062_2 2.2|472894|39|NZ_CP050062|PILER-CR 472894-472932 39 NZ_CP050062.1 472461-472499 1 0.974
NZ_CP050062_2 2.2|472894|39|NZ_CP050062|PILER-CR 472894-472932 39 NZ_CP050062.1 472595-472633 2 0.949

1. spacer 2.1|472823|18|NZ_CP050062|PILER-CR matches to position: 472420-472437, mismatch: 0, identity: 1.0

acagatgcggcaccgaca	CRISPR spacer
acagatgcggcaccgaca	Protospacer
******************

2. spacer 2.2|472894|39|NZ_CP050062|PILER-CR matches to position: 472328-472366, mismatch: 0, identity: 1.0

ccgtagagccgagctctgctcggctgccgtccgttccgg	CRISPR spacer
ccgtagagccgagctctgctcggctgccgtccgttccgg	Protospacer
***************************************

3. spacer 2.2|472894|39|NZ_CP050062|PILER-CR matches to position: 472731-472769, mismatch: 0, identity: 1.0

ccgtagagccgagctctgctcggctgccgtccgttccgg	CRISPR spacer
ccgtagagccgagctctgctcggctgccgtccgttccgg	Protospacer
***************************************

4. spacer 2.2|472894|39|NZ_CP050062|PILER-CR matches to position: 472998-473036, mismatch: 0, identity: 1.0

ccgtagagccgagctctgctcggctgccgtccgttccgg	CRISPR spacer
ccgtagagccgagctctgctcggctgccgtccgttccgg	Protospacer
***************************************

5. spacer 2.1|472823|18|NZ_CP050062|PILER-CR matches to position: 472687-472704, mismatch: 1, identity: 0.944

acagatgcggcaccgaca	CRISPR spacer
acaggtgcggcaccgaca	Protospacer
****.*************

6. spacer 2.2|472894|39|NZ_CP050062|PILER-CR matches to position: 472461-472499, mismatch: 1, identity: 0.974

ccgtagagccgagctctgctcggctgccgtccgttccgg	CRISPR spacer
ccgtagagccgacctctgctcggctgccgtccgttccgg	Protospacer
************ **************************

7. spacer 2.2|472894|39|NZ_CP050062|PILER-CR matches to position: 472595-472633, mismatch: 2, identity: 0.949

ccgtagagccgagctctgctcggctgccgtccgttccgg	CRISPR spacer
ccgcagagccgagctttgctcggctgccgtccgttccgg	Protospacer
***.***********.***********************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP050062_5 5.2|3172252|21|NZ_CP050062|CRT 3172252-3172272 21 NZ_CP044217 Mesorhizobium sp. NIBRBAC000500504 plasmid unnamed, complete sequence 111114-111134 2 0.905
NZ_CP050062_5 5.4|3172333|30|NZ_CP050062|CRT 3172333-3172362 30 NC_014818 Asticcacaulis excentricus CB 48 plasmid pASTEX01, complete sequence 118487-118516 6 0.8

1. spacer 5.2|3172252|21|NZ_CP050062|CRT matches to NZ_CP044217 (Mesorhizobium sp. NIBRBAC000500504 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.905

ttcactgccttgcgggcggtc	CRISPR spacer
ttcactgccttgcgggcggcg	Protospacer
*******************. 

2. spacer 5.4|3172333|30|NZ_CP050062|CRT matches to NC_014818 (Asticcacaulis excentricus CB 48 plasmid pASTEX01, complete sequence) position: , mismatch: 6, identity: 0.8

acggctttacgggcagtcgccttcttagcg	CRISPR spacer
acgacgaggcgggccgtcgccttcttagcg	Protospacer
***.*   .***** ***************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1463389 : 1519113 55 Pseudomonas_phage(26.67%) portal,protease,integrase,terminase,capsid attL 1471156:1471172|attR 1513081:1513097
DBSCAN-SWA_2 2032810 : 2041931 10 Xanthomonas_phage(66.67%) transposase NA
DBSCAN-SWA_3 2757741 : 2817450 54 Siphoviridae_environmental_samples(40.0%) tail,protease,tRNA NA
DBSCAN-SWA_4 2820834 : 2828946 11 Pseudomonas_virus(33.33%) integrase attL 2825032:2825048|attR 2833970:2833986
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage