CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NZ_CP050117	Deinococcus radiodurans strain BNK-50 chromosome 2, complete sequence	0 crisprs	csa3	0	0	0
NZ_CP050118	Deinococcus radiodurans strain BNK-50 plasmid pMP1, complete sequence	1 crisprs	NA	1	1	1
NZ_CP050119	Deinococcus radiodurans strain BNK-50 plasmid pCP1, complete sequence	0 crisprs	NA	0	0	0
NZ_CP050116	Deinococcus radiodurans strain BNK-50 chromosome 1, complete sequence	1 crisprs	cas3,c2c9_V-U4,DEDDh,csa3	0	0	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP050118_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP050118_1

146621-146699

Orphan

Consensus_repeat	Method
GACTTGTAAAGCTGCGAAGCAGAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP050118_1

>merge|NZ_CP050118|1|146621-146699|CRISPRCasFinder
GACTTGTAAAGCTGCGAAGCAGAGCGGAGCGAGAGGCAAAAGAGACGTGCTGCGGGACTTGCAAAGCTGCGAAGCAGAG

>NZ_CP050118|1|1|146621-146699|CRISPRCasFinder
GACTTGTAAAGCTGCGAAGCAGAG	CGGAGCGAGAGGCAAAAGAGACGTGCTGCGG
GACTTGCAAAGCTGCGAAGCAGAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP050118.1\|WP_010884049.1\|144080_145289_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223650
NZ_CP050118.1\|WP_010884004.1\|152295_154032_+\|SgrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226909
NZ_CP050118.1\|WP_010884019.1\|135586_136570_-\|IS4-family-transposase	unknown	unknown	gnl\|CDD\|376573
NZ_CP050118.1\|WP_027480382.1\|146807_148574_-\|alkaline-phosphatase	unknown	unknown	gnl\|CDD\|224699
NZ_CP050118.1\|WP_063653100.1\|150984_152241_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340887
NZ_CP050118.1\|WP_162177804.1\|165481_167116_-\|NAD(P)-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|224983
NZ_CP050118.1\|WP_010884007.1\|141034_141436_+\|PTS-dependent-dihydroxyacetone-kinase-phosphotransferase-subunit-DhaM	unknown	unknown	gnl\|CDD\|225946
NZ_CP050118.1\|WP_010884075.1\|168120_168441_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050118.1\|WP_027480379.1\|139446_140445_+\|dihydroxyacetone-kinase-subunit-DhaK	unknown	unknown	gnl\|CDD\|237724
NZ_CP050118.1\|WP_027480374.1\|157320_160044_-\|DUF11-domain-containing-protein	unknown	unknown	gnl\|CDD\|307488
NZ_CP050118.1\|WP_010884044.1\|160196_162272_-\|DUF11-domain-containing-protein	unknown	unknown	unknown
NZ_CP050118.1\|WP_010884043.1\|163684_164641_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050118.1\|WP_010884017.1\|145285_145933_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224059
NZ_CP050118.1\|WP_081816081.1\|140399_141038_+\|dihydroxyacetone-kinase-subunit-L	unknown	unknown	gnl\|CDD\|274099
NZ_CP050118.1\|WP_010884003.1\|164800_165460_+\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_CP050118.1\|WP_155896399.1\|150744_150912_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050118.1\|WP_149358002.1\|137097_137613_-\|transposase	unknown	unknown	gnl\|CDD\|225949
NZ_CP050118.1\|WP_162177805.1\|141726_143727_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050118.1\|WP_010884051.1\|138456_138987_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050118.1\|WP_010884048.1\|145929_146388_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP050118.1\|WP_010884049.1\|144080_145289_-\|ABC-transporter-permease	gnl\|CDD\|223650	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms].	5.61897e-14
NZ_CP050118.1\|WP_149358002.1\|137097_137613_-\|transposase	gnl\|CDD\|225949	COG3415, COG3415, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.58205e-26
NZ_CP050118.1\|WP_010884019.1\|135586_136570_-\|IS4-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	1.15912e-13
NZ_CP050118.1\|WP_010884004.1\|152295_154032_+\|SgrR-family-transcriptional-regulator	gnl\|CDD\|226909	COG4533, COG4533, ABC-type uncharacterized transport system, periplasmic component [General function prediction only].	0
NZ_CP050118.1\|WP_162177804.1\|165481_167116_-\|NAD(P)-binding-domain-containing-protein	gnl\|CDD\|224983	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism].	1.15472e-148
NZ_CP050118.1\|WP_010884007.1\|141034_141436_+\|PTS-dependent-dihydroxyacetone-kinase-phosphotransferase-subunit-DhaM	gnl\|CDD\|225946	COG3412, COG3412, Uncharacterized protein conserved in bacteria [Function unknown].	2.14118e-46
NZ_CP050118.1\|WP_027480379.1\|139446_140445_+\|dihydroxyacetone-kinase-subunit-DhaK	gnl\|CDD\|237724	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional.	0
NZ_CP050118.1\|WP_027480374.1\|157320_160044_-\|DUF11-domain-containing-protein	gnl\|CDD\|307488	pfam01345, DUF11, Domain of unknown function DUF11. A domain of unknown function found in multiple copies in several archaebacterial proteins. Conserved N-terminal lysine and C-terminal asparagine with central asp/glu suggests that many of these domain may contain an isopeptide bond.	1.98261e-15
NZ_CP050118.1\|WP_010884017.1\|145285_145933_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224059	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	9.21638e-73
NZ_CP050118.1\|WP_081816081.1\|140399_141038_+\|dihydroxyacetone-kinase-subunit-L	gnl\|CDD\|274099	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form (EC 2.7.1.-) with a phosphoprotein donor related to PTS transport proteins. This family represents the subunit homologous to the E. coli YcgS subunit.	1.40088e-73
NZ_CP050118.1\|WP_010884003.1\|164800_165460_+\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.81915e-43
NZ_CP050118.1\|WP_063653100.1\|150984_152241_-\|MFS-transporter	gnl\|CDD\|340887	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MdtH and similar multidrug resistance (MDR) transporters from bacteria and archaea, many of which remain uncharacterized. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtH confers resistance to norfloxacin and enoxacin. MdtH-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.18972e-77
NZ_CP050118.1\|WP_027480382.1\|146807_148574_-\|alkaline-phosphatase	gnl\|CDD\|224699	COG1785, PhoA, Alkaline phosphatase [Inorganic ion transport and metabolism].	1.2414e-164

>NZ_CP050118.1|WP_010884048.1|145929_146388_-|hypothetical-protein
MNRRTVLKLLGAAPGALWLAPFGRAGAQSAAASLNFNELYGKVTVRGAEYSSKIKALNGRKVTMSGYMAPPLKPKLDFFVLTRQPMSTCPFCTTAADWPADIVLVIMPPGQELEPSVRGLNVTGRLEIGVKRDDETGFVSLVRLYAERVRDA
>NZ_CP050118.1|WP_010884017.1|145285_145933_-|ABC-transporter-ATP-binding-protein
MSRQLSGRNLSIQHGAEVRLTYPDFSWPAGTHLALTGPSGTGKTSLLNAVAGLLRPSTGQLCYGEHDLTALSEAGRDAFRRREVGYVFQDFHLMPGLSAQENVELGLRVAGVRNAGALAQTALRRLDLAGRLQSKPWQLSTGERQRVAIARAVAHRPGLLLVDEPTAHLDRERAAGAMSLLREVATELGATLVVVTHDEAVALSLPEHFRIRGAS
>NZ_CP050118.1|WP_010884049.1|144080_145289_-|ABC-transporter-permease
MRLAWWTALKTLRHRLGALIITVLAVALATATALVVPLVSRQVERGAQDAAQVFDLLVTAKGSGTQAVMSSLFYLDVPIGNVPHSVYQKLLSAPGTRRAVPIALGDNYAGFPVVGTSAQFFDQRLKPAAPPYFRVAQGNIFARVHDAVVGAAAARQSGLKVGSTFRSAHGLGGADTEGGAAPSTHDEPYTVTGILAPTGGPVDRAVLTPIETLWEAHGEAAASKRDVTAVLYSAENLAGIYTTAGQINAGKDAMAVFPGQVFAQARQTLMQGQAAYAGLSVLVLAIAALTVTLSVYTSGLERRRTVALLRALGAGRGTVFALVLLETGLTVTLGALLGIGLSLLVSRVGGNVLGQRLGFTLAAPELTWPLASRALGLIPLGILAALPPALQALRVSPLRHLH
>NZ_CP050118.1|WP_162177805.1|141726_143727_-|hypothetical-protein
MQRLLSTVLVLSLAVGASAQQSNGQVSFTAPKGWAASSSQGGVLQYTHTSAGGVDGALLIGQDMPLPNDPVRWLEQTARSLAGGQALSEQAVQSEQLASGLTALYKVLIGGTPQQPVAYVAALLHNGTSGVLVVFLSSDVENKNALEKDVDAVVESIRLSGKPTQTAGTTAAAGAGAKPAEPNLPTVNPMNAAQFKAAGGNPARQIIPDEFRCYVKRKGDGLSPDLTVQVLPGGTYRTVYGNGTYQINKDRKITWQGGPLNKADGSLDFDDYGQAFSLSDVSEDTQDTSLNFECYQRGPRENVALHNFKLRTPKPGSYSCVLADGQGDRGALEVGADNTYRFGGAAGRYRVDYRSDQDSARSSLTLRGEGDLEESGFYSEDETGLRVFTLTVPTGGDLISRSSTAWTCTAVAKPTPAPSLYGSEKAPAPPQGSGGLNGNFVHNRAGKLVPVLQIGPDFTSSMVLGSECPGNVCWAFAFFNPNGYVYTQEPKVDASEADCTRTYPNGLPRCEVYRVTGNTIQIGDRAPVPFTLTGSGLNLDGQRYDKLQPMDTLILRGSYESLEVTPNLYLGGSTSSLALTFGEGRTFSLSSDRSTTVMVPGATVSNSNRAATLTGTYKFSGNTVELTYRDGRVVRQFAALPVEGGKITPTLLRIGGVTYSPSIDKK
>NZ_CP050118.1|WP_010884007.1|141034_141436_+|PTS-dependent-dihydroxyacetone-kinase-phosphotransferase-subunit-DhaM
MSVTLVIVSHSAKLAEGVAEFVGQMNAGQVELEAVGGTDDGLLGTSATRIHAALERATQAGGEALVLMDLGSARLRSELALDLLREEQRVRVALAEAPLVEGAFLAAFEAATGGDLRTVQAAAEEGGALKKMG
>NZ_CP050118.1|WP_081816081.1|140399_141038_+|dihydroxyacetone-kinase-subunit-L
MGRASGHACAAVGRVNSEQTRQFLELYARKIQAADQHLTELDSAIGDADHGSNMERGMTAVVGTLPASGTPSDLLRSAAMTLISKVGGASGPLYGTALLRAATSMAGKDEWTQDDLQEALEAAYQGLLERGKAQPGDKTMLDVWRPALDALPGGVGAAAQAASSAAEATRDLTARKGRASYLGERSAGHVDPGSVSSALLFEALAEALEQRP
>NZ_CP050118.1|WP_027480379.1|139446_140445_+|dihydroxyacetone-kinase-subunit-DhaK
MKKIMNATADLVRESCEGFAAAHADLVKPQSDPLFLYRTGDLRGRVALISGGGSGHEPLHAGYIGRGMLTAACPGEVFTSPVPDQMLAAIRHTHGGQGALLIVKNYTGDVMNFELAAELAAAEGIEVASVVIGDDVAVQDSTWTAGRRGVGGTVLLEKIAGAAAEAGAELAEVKQVAQIVMDGVRSMGLALTGATVPAAGKPNFTLADDEIELGIGIHGEPGRERQQLRPADELVDALLDPVTADLDLKRGEEVIALTNGMGGTPLLELYVAHGHVVNHLADRGVKVVRHLVGNYVTSLEMQGLSVTLLRASSEQLRLWDAPVVTPALRWGA
>NZ_CP050118.1|WP_010884051.1|138456_138987_-|hypothetical-protein
MNPNLRTGALILASAFAPVVAGGAGQTAPTFAKSAFCQKYQCKLLSTETVAPGLTEQRYFLNAVVSNDPRTVVSTFMRGGQVVGAQYVTGTQDAFFAWNLGKPEPEMFAELVKTVTGKRPTPQFFEGIEDQCSRVYGTEKSAQIPGTTSRLSCVVSQEFSSAHGSGAARLSLRVHR
>NZ_CP050118.1|WP_149358002.1|137097_137613_-|transposase
MPQVWQPNRLTRQQLEERRLAAQPLLNNPEWTTASIAEHFGVKPSTVRVWRVRLSERGSLEATLSSGRPAWLNDAQVAEIIELLQQGPDPERFPDGRWTTERVRDVIGLKFDVWYDHDWIGKLLRRWGFSWQKAEKHAIEQNPEKIDAWLEEELPALEKKGRSWRNDRLGR
>NZ_CP050118.1|WP_010884019.1|135586_136570_-|IS4-family-transposase
MIDAPRVNHHDLSAHMPGMSTPQGKKRRADRTFRDEQLDRGFFIALLVVHLPPGKVLLSLDRTNWEHGETPINFLVLGAVVHGFTLPLIWVPLDQSGNSHTYARMWLVLKLLRAWPAKRWLGLVADREFIGAEWFRFLRRQGIKRAIRIRQTDMLDDMKGKEWFEHVQHGHFHEIGEKVFVFGELMRVVATRSPVGDLVIIATDFSARKTWRLYKQRWSIECTFSSFKKRGFDLERTGMTERSRLQRLFGLVTLAWMFCLRLGVWLSQTWPIPVLKHGRRAVSLVRHGAQHLVDALRWKPQQFMAILEVFIQAFCPPGAAESEVVTY
>NZ_CP050118.1|WP_027480382.1|146807_148574_-|alkaline-phosphatase
MRKTLLLLALLSASASAAKLQVYPYDGANFIAGQRFDLRVEAEDVTSFKDAVITLDGQPVTGLVKTTTKPTSVEWTLRNQSLAAGEHVLNVKFSDAGGEVTRSVHWTAQASAPSGLAALFQKPKAKNVILFIADGMGWNTLNAAKMVAYPYNPANGMPTGKLAMETGLSSMATITTSSYDSALADSANTASSIATGQKIQVNALNVYGDNTPDTLDNPRAETITAMLKRSMGKSVGIVSSAFGVDATPAAFAAYTRRRGDYQAIADQYFKGDVKPDVLLIGGSRDFIPSTAPGSRRKDNTDWISESQKMGYQFVSTRTELNAATGNKLFGLFNIDNIPSYLDRVQFKGAETIGDFKDMPYLWDSTQKAVQTLEKNPNGFFLMVEAGMVDKYEHPLDWNRAVWDVLELDKAVAWAKDYAKSHPDTLILVTADHAHSMSVYGGYDATKGPGKREAVGVYEKAGFPTYGDKRDANGFPLSETARTYAVGFAATPDYCETYLGRRVFLDPTVSNGKTGAEAAYVPNPKICDEGAVQRTGNLDPGSSQGVHTADPLPLFVFGAGAENFSGVMDQTEIFFGMARALGLDATKNK
>NZ_CP050118.1|WP_155896399.1|150744_150912_+|hypothetical-protein
MVENDTISLAELDQAMQSFSNPQSKLLGVVLNKVPRSREGYAHYSYSNAEQPTTI
>NZ_CP050118.1|WP_063653100.1|150984_152241_-|MFS-transporter
MWRQLHPNIKVRIINSFLTRMVGGAIFPFMAVYFAHYLGAGLAGLLLMALVAVQFVAGLYGGGLADAWGRRRTLLAGEVLKLLAFAALLLGNLWTPLPWVTFAALAVINVANGLINPAAEAMLVDVSTPDTRTFMYVVNYWAVNASLLLGTLLGGWLYQDHFAALLAGLLGMSFVTLFLAWRFMSETLGGLRRTAAQVRESVGVRPLLRSYAQVMTDRPYVLFTLGFVLLMTIEFGRQNFIPVHLAQSFPAQVLWGVNLTGIKVMSLVTAINTLLIVVLTLPVSHWVGKRELRPVMALGFLLFAVGFAALYGSLNLWALVAGSVVLSIGELLYVPARQTLLADLIPEEKRGSYLAVNGQVFTLAKWLATLGVPLGAQIGGPWMGVLIVLFGVLAVVLSLRGLRAASPERTPERSAPTF
>NZ_CP050118.1|WP_010884004.1|152295_154032_+|SgrR-family-transcriptional-regulator
MTPFAAGPDWPYLELRAALLARDGEQSSYALTLNDLRGWWSKSDKTVKRTLARLQAEGKVTYTPGRGRGRTSRLSFSRDLRPELLTLTRELARRQAAGELARLSRLPFPKGWVLTPDVQRIFGLSASAGGVDRLRTVVFREYTSLDPLTAFATVEAHLLLQVFDGLTRYDPATQTLEPHLAHHWGCSDDGLTWTFYLRKGVPFHHGRTLDASDVRASLERVQRGAAWLLPELLEVRSDHPYRVSLRLARPDAFLPRRLAATQALIVPRDVPPDPQQLIGTGAFQWQPLEGGVRLSAFDAHFAGRPLIDEVELYQVEPLTEAPTLHLEGAAPQKVAEWQEETGVHFLIWNAGQPAAHSAALRAAVFELHDIRRFWEETRQPWPLLSAQSFYPRRSRDRPARVHSDERARSLLAAAGPQPPLRLWVLDREDAVAEARWLSRRAAGFGLEITVELYDLHDEVTRDTPSDLMMMGEVSGPDEQLSFWTALKQPELFFRKLLPREVLAQVDTELEEYRLAQTFAGREAVIDRVEALLLEGHHVHLTHHRVKQRTVHPLLRDVWPDAYGRISFRRLWVGGPAQD
>NZ_CP050118.1|WP_027480374.1|157320_160044_-|DUF11-domain-containing-protein
MKSMLRLCLPLCCAAACLAGAAPAGTVIQNQASAQFSLPGGGAGLVNSEPAQLLVNAVCRVQVTPDGTPQAPGQRLTVRAGEPATLRYELSNAGNGPATFTLSAQALDGAFTPNLTTFVDANGDGQPQPGEQAEQLTLGAGASAAVLLVAVVPAGASGAALVNLTAQCPGGAQDDNNVAQLVATPPPHLELRKAFGAERLRPGDQTGVTVTATNTGAGAAPDVVLEDPLGQQLDAGLAYVPGSARTDRGRLEYSADGASWQAAEPAAVRGVRVQAGTLEPGEQTTLTFRMEARPSAENLLLNNVATVSSVTGEGAQASDTLDVRFLPGVALGPLGQPLAPEGTAADGQTLVFAVTGEPACFDHTVQNTGDVTDMFRLSVSVTQGQATPQLLGAAGEPLPQPFTLAPGEQRQVRVCYDLRSAQPLTAQVIAQGERGTSNATADLIRRVETQRPGLRKTVSKVGAPDWAPGSAVTSGDELEYTLSVTNPYAQPLAGVQVLDPLPAGTEFVSASDGGALLGAASAAQVAWTLGDLPAGATRTLTLRVRVGRDVRDDQELRNVFELTSSELPAPLHSNAASAVVWNTAPLLSKTLDRRDAAPGDLLTYTLTLKNPSASTALVDLVITDTPAAALKYVTGTSRLAGVPTADPAENGGELQWRVPRLGAGESLTLSYGLRVLPGAAGELLNTAVLRGYGEQTHAVAVASNRAQVSATLKLLNFAPLGDVLGTVYLDANGNRRLDEGETVLSGARVALAGGRLALTDSRGRYHFGNVDLGTQALRLDLGSVPAVRDPGTQVVQVQGLTTVDFPLRALAALQVKRDLRVQVGELTLTKRLTEIPGGYRVTTTLQSPVALAEVAWTDPLPAGAALVSGQNVRRERLSAGSTTWTYDLRWSGPPSAALTDPVLKVVK
>NZ_CP050118.1|WP_010884044.1|160196_162272_-|DUF11-domain-containing-protein
MKANMKLLALLCALGSGAAGAASTNTMTLAGTEITNQAQATFTVGGATQTTNSDAVKIVVNAVPSYTITNDGTEASPAYTSTVNVNSNATYSYSVKNTGNTPIQVAVGATVGTGSSAITQVNYSGAATGTVPTTGAATIQTITINPDQTVTLTQTFVTPAAPGTYYVNPTGVSMQYASVAANPDGSALTTATLDQTSNRTDVNNVNKTTVLTNVPLLGSPTLTNTVVPSSPNPLPPTGTTTPGTGTGPVGSGNGPAESTGPAYTGIGSTSGTQPPVVVDASGNQYAYPKADAETVNPDSVTMTTIITNPNPTAATYELVPDLSGLPAGVTVTFTDANGNPLPDTDGNGRPEVTAGPNGGTATYRVVVTYPDTESAAAVAGPIRIPVGVDGNRDGIVDATVTYNVLLSNLKFGNTNGTALGVSDVPVTRTVTQPSVTTAVVFPMDLFNDGAYDGNYALSGSTPIGPVKYYATNPDTDGDGVLSPAELAALPAEIASTGAVPVKTEKTVYAVVTIPAGQAPGDYMVTQTATGSLSGTTKSFNTDKVTVTSPNGSLLIAKRVTTPGTTTPSLNATANPGDAVSYTVTATNNYNTSLYGLVLRDPSSNNLGSFSSSNVFGFIKPSSLRATVSGVSGATVLYRTSNLNTWAAQPTVDANTTWVEVGVDTNNNSQIDSGDVFPPNAVITLTLQGTVK
>NZ_CP050118.1|WP_010884043.1|163684_164641_+|hypothetical-protein
MSSPLAEPPEINALLARVQPALLSSAWWAEWQTAGSGTQRATLLQNLSETIRKSDLALSQQLSELALEEVFQDDEREKHAEQADLVTIQALNTLAWVRANLNDYAYSLEYCDKAFNLATQRGLQDWQCRLLNTRALPRFWLGDEMGARADLQEALELAELRGDVKQLLMCYINIAWLEILSEELESAEHHLNLLAEQLHMTDDAQLRQNHIFYLYENRLHVKLLQAREAERLGRDQAMQDALSAAQTHLDWCLTNTHFCSDKPPFEMVIRAHQAQFFMLSGEPALAVQYGEAAIEFGTHSDTWVSAYAHFCLAEAYSM
>NZ_CP050118.1|WP_010884003.1|164800_165460_+|GGDEF-domain-containing-protein
MQESQTSFKRLSEFAQQRRLLHERLKREDARDVDWQERLRQADILARQDALTGVLNRRGLDEGLSALQQSGEWSATQQAEQIAVGFIDIDHFKSFNDEFSHATGDEVLRCLAALLQQIALSPTPSLLGRYGGEEFVLVASVNEERTAWQLFEDCRELIRDHDWSGIAAQRGVTVSIGFATGVPADLPQLLLKADEHLYQAKREGRNRTLPQPASIHSRA
>NZ_CP050118.1|WP_162177804.1|165481_167116_-|NAD(P)-binding-domain-containing-protein
MAAGVPCEWAEVAGGYHGFHLLKPEAEASRQFNTSFLSALRRALGLPDQNTDALPRVNTTPPTQAAALDVLIIGAGLSGIGAAHHLKTKNPGKTFEILEARQAMGGTWDLFRYPGVRSDSDVFTLGYSFKPWLGRKSIADGGDIRQYIQDAADEGGITPHIRFGHRVKSAEWSSEESLWTVTAEQEDGTPVLRQAKFLFLCSGYYSYDEAHRPEFPGEASFQGQIIHPQFWPEDVDYSGKRVVVIGSGATAVTLVPAMTDKAAHVTMLQRSPSHIAVRPLVDGTAAAFQKWLPAPVAHGVTRWKNVLSSIFYYQIARKAPDLFMRGLLDEAQKHLGERFNPADFTPSYKPWDQRVCAIPDADLFQAIRDGKASVLTETIQTFTPHGIRLTGGQELPADIIVTATGLKMNVLGDIEFALDGRPVDLSQTLIYKGMMLSSLPNFAYAFGYTNSSWTLKAELTADYVCRLLTYMDRHAFRAVSPQADSDLGERPLLDLNSGYVTRSLDVLPKQGSKQPWQVYQNYLLDKYAIQVAPINDGTLRFMRR
>NZ_CP050118.1|WP_010884075.1|168120_168441_+|hypothetical-protein
MTPAQRSPASDPFIAGRLAMRLELLITQIQQRKFSPGTEIRMGAYAYNTLQLLLTHRTSNQLDWQGFYASGLTHSLPKELSGQAPTPTYRLITDKQMQPAGGIIIQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP050118_1	1.1\|146645\|31\|NZ_CP050118\|CRISPRCasFinder	146645-146675	31	NZ_CP050116.1	529107-529137	1	0.968
NZ_CP050118_1	1.1\|146645\|31\|NZ_CP050118\|CRISPRCasFinder	146645-146675	31	NZ_CP050116.1	776827-776857	2	0.935

1. spacer 1.1|146645|31|NZ_CP050118|CRISPRCasFinder matches to position: 529107-529137, mismatch: 1, identity: 0.968

cggagcgagaggcaaaagagacgtgctgcgg	CRISPR spacer
cggagcgagaagcaaaagagacgtgctgcgg	Protospacer
**********.********************

2. spacer 1.1|146645|31|NZ_CP050118|CRISPRCasFinder matches to position: 776827-776857, mismatch: 2, identity: 0.935

cggagcgagaggcaaaagagacgtgctgcgg	CRISPR spacer
cggagcgagcagcaaaagagacgtgctgcgg	Protospacer
********* .********************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Identity
NZ_CP050118_1	1.1\|146645\|31\|NZ_CP050118\|CRISPRCasFinder	146645-146675	31	NC_000958	Deinococcus radiodurans R1 plasmid MP1, complete sequence	55186-55216	1.0
NZ_CP050118_1	1.1\|146645\|31\|NZ_CP050118\|CRISPRCasFinder	146645-146675	31	NZ_CP050118	Deinococcus radiodurans strain BNK-50 plasmid pMP1, complete sequence	146645-146675	1.0
NZ_CP050118_1	1.1\|146645\|31\|NZ_CP050118\|CRISPRCasFinder	146645-146675	31	NZ_CP050122	Deinococcus radiodurans strain BND-54 plasmid pMP1, complete sequence	91142-91172	1.0
NZ_CP050118_1	1.1\|146645\|31\|NZ_CP050118\|CRISPRCasFinder	146645-146675	31	NZ_CP031502	Deinococcus radiodurans strain R1 dM1 plasmid pMP1, complete sequence	101703-101733	1.0

1. spacer 1.1|146645|31|NZ_CP050118|CRISPRCasFinder matches to NC_000958 (Deinococcus radiodurans R1 plasmid MP1, complete sequence) position: , mismatch: 0, identity: 1.0

cggagcgagaggcaaaagagacgtgctgcgg	CRISPR spacer
cggagcgagaggcaaaagagacgtgctgcgg	Protospacer
*******************************

2. spacer 1.1|146645|31|NZ_CP050118|CRISPRCasFinder matches to NZ_CP050118 (Deinococcus radiodurans strain BNK-50 plasmid pMP1, complete sequence) position: , mismatch: 0, identity: 1.0

cggagcgagaggcaaaagagacgtgctgcgg	CRISPR spacer
cggagcgagaggcaaaagagacgtgctgcgg	Protospacer
*******************************

3. spacer 1.1|146645|31|NZ_CP050118|CRISPRCasFinder matches to NZ_CP050122 (Deinococcus radiodurans strain BND-54 plasmid pMP1, complete sequence) position: , mismatch: 0, identity: 1.0

cggagcgagaggcaaaagagacgtgctgcgg	CRISPR spacer
cggagcgagaggcaaaagagacgtgctgcgg	Protospacer
*******************************

4. spacer 1.1|146645|31|NZ_CP050118|CRISPRCasFinder matches to NZ_CP031502 (Deinococcus radiodurans strain R1 dM1 plasmid pMP1, complete sequence) position: , mismatch: 0, identity: 1.0

cggagcgagaggcaaaagagacgtgctgcgg	CRISPR spacer
cggagcgagaggcaaaagagacgtgctgcgg	Protospacer
*******************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1846 : 88812

Bacillus_phage(20.0%)

integrase,transposase

attL 45417:45442|attR 79701:79726

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010884015.1\|1846_2830_+\|transposase	IS4-like element ISDra1 family transposase	NA	NA	NA	NA
WP_149358003.1\|3118_3463_+\|transposase	transposase	NA	NA	NA	NA
WP_149358004.1\|3423_4125_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	3.2e-35	39.6
WP_063653101.1\|4200_5385_-\|transposase	IS4-like element ISDra7 family transposase	NA	NA	NA	NA
WP_010884024.1\|5538_6279_-	siderophore-interacting protein	NA	NA	NA	NA
WP_165439382.1\|6286_7045_-	heme ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.1e-12	29.9
WP_010883993.1\|7068_8133_-	iron ABC transporter permease	NA	NA	NA	NA
WP_081816091.1\|9365_9626_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_027480395.1\|9626_10007_+	PIN domain-containing protein	NA	NA	NA	NA
WP_027480394.1\|10295_11720_-	cobyric acid synthase	NA	NA	NA	NA
WP_010883990.1\|11727_12735_-	histidinol-phosphate aminotransferase family protein	NA	NA	NA	NA
WP_034351275.1\|12727_13624_-	cobalamin biosynthesis protein CobD	NA	NA	NA	NA
WP_027480393.1\|13620_14940_-	cobyrinate a,c-diamide synthase	NA	NA	NA	NA
WP_081799310.1\|14935_15547_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_027480391.1\|15555_16419_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010884020.1\|17026_18010_-\|transposase	IS4-like element ISDra1 family transposase	NA	NA	NA	NA
WP_162177818.1\|18401_19997_+	hypothetical protein	NA	NA	NA	NA
WP_010884039.1\|19989_21483_+	hypothetical protein	NA	NA	NA	NA
WP_010884026.1\|22336_23212_-	ParB/RepB/Spo0J family partition protein	S5VTK0	Leptospira_phage	1.2e-12	42.6
WP_010884025.1\|23208_23985_-	ParA family protein	Q8JL10	Natrialba_phage	1.8e-10	31.1
WP_027480407.1\|24626_26024_+	lipoprotein	NA	NA	NA	NA
WP_010884037.1\|26172_27501_-	McrC family protein	NA	NA	NA	NA
WP_010883985.1\|27500_30410_-	McrB family protein	K4I1H4	Acidithiobacillus_phage	1.5e-25	39.8
WP_162177817.1\|30406_30940_-	hypothetical protein	Q24LG0	Clostridium_phage	2.4e-06	23.4
WP_010884027.1\|30963_31470_-	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_081816096.1\|31509_31767_-	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_010884023.1\|45028_46012_-\|transposase	IS4 family transposase	NA	NA	NA	NA
45417:45442	attL	NA	NA	NA	NA
WP_051618940.1\|46318_47827_+	sodium:alanine symporter family protein	NA	NA	NA	NA
WP_063653090.1\|47919_49104_+\|transposase	IS4-like element ISDra7 family transposase	NA	NA	NA	NA
WP_027480398.1\|49615_50395_+	TerC family protein	A0A0R6PEZ3	Moraxella_phage	3.9e-42	45.9
WP_010883977.1\|50838_52140_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_010883976.1\|52136_53450_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_010883975.1\|53979_54501_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_010883974.1\|54843_55818_+	iron-siderophore ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_162177813.1\|55826_56738_+	SIP domain-containing protein	NA	NA	NA	NA
WP_010883972.1\|56734_57709_+	iron ABC transporter permease	NA	NA	NA	NA
WP_162177814.1\|57768_58737_+	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA
WP_010883970.1\|58733_59543_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.7e-16	31.2
WP_010883969.1\|60838_62107_+	sodium:proton antiporter	A0A2H4J178	uncultured_Caudovirales_phage	7.3e-38	40.6
WP_027480426.1\|62390_63344_+	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_010884022.1\|63359_64343_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_010884035.1\|64707_65421_+	DUF2259 domain-containing protein	NA	NA	NA	NA
WP_063653102.1\|65828_67013_-\|transposase	IS4-like element ISDra7 family transposase	NA	NA	NA	NA
WP_027480400.1\|68511_69078_-	DUF3592 domain-containing protein	NA	NA	NA	NA
WP_162177815.1\|69291_71601_-	glycerophosphodiester phosphodiesterase	A0A2P1N091	Streptomyces_phage	3.2e-07	36.0
WP_010884021.1\|71659_71923_-	thioredoxin	NA	NA	NA	NA
WP_027480401.1\|71915_72911_-	ribonucleotide-diphosphate reductase subunit beta	A0A142F1R6	Bacillus_phage	7.3e-86	50.8
WP_027480402.1\|72967_75055_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	R4JDX9	Bacillus_phage	1.1e-189	47.8
WP_010883964.1\|75039_75465_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	S5MA49	Bacillus_phage	5.1e-12	33.3
WP_162177816.1\|75621_76104_-	acyl-CoA thioesterase	NA	NA	NA	NA
WP_010883962.1\|76537_77572_-\|integrase	tyrosine-type recombinase/integrase	W8EHC2	Mycobacterium_phage	1.3e-08	33.3
WP_063653103.1\|77729_78905_-\|transposase	IS4-like element ISDra7 family transposase	NA	NA	NA	NA
WP_010884020.1\|79130_80114_+\|transposase	IS4-like element ISDra1 family transposase	NA	NA	NA	NA
79701:79726	attR	NA	NA	NA	NA
WP_081816080.1\|80537_81419_+	hypothetical protein	A0A1V0SK86	Klosneuvirus	6.6e-30	27.6
WP_010884034.1\|81611_82244_+	RNA ligase family protein	A0A248SJ81	Salicola_phage	5.5e-55	49.0
WP_010884064.1\|82240_83098_+	TIGR02452 family protein	G3MBH6	Bacillus_virus	7.6e-39	38.4
WP_010884033.1\|83073_84315_+	AAA family ATPase	D5GVP0	Campylobacter_virus	7.2e-06	31.4
WP_034351235.1\|84398_85187_-	alpha/beta fold hydrolase	A0A218MNI3	uncultured_virus	4.9e-61	40.8
WP_010884031.1\|85356_85695_+	hypothetical protein	NA	NA	NA	NA
WP_165439381.1\|85734_86127_-	hypothetical protein	NA	NA	NA	NA
WP_162150140.1\|87780_88812_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.2e-14	34.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP050116

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP050116_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP050116_1

509781-509870

Orphan

Consensus_repeat	Method
CGGGCAAGGACGTGACCCTCACCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP050116_1

>merge|NZ_CP050116|1|509781-509870|CRISPRCasFinder
CGGGCAAGGACGTGACCCTCACCCGGCGCGGCGAGCAGCTCAGCGGGCGCATCGGCGGGCAGGTGGACGGCAAGGACGTGACCCTCACCC

>NZ_CP050116|1|1|509781-509870|CRISPRCasFinder
CGGGCAAGGACGTGACCCTCACCC	GGCGCGGCGAGCAGCTCAGCGGGCGCATCGGCGGGCAGGTGG
ACGGCAAGGACGTGACCCTCACCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP050116.1\|WP_010889207.1\|500604_502341_+\|NAD-dependent-malic-enzyme	unknown	unknown	gnl\|CDD\|237414
NZ_CP050116.1\|WP_034350864.1\|505944_506946_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
NZ_CP050116.1\|WP_034350868.1\|503915_504155_+\|exodeoxyribonuclease-VII-small-subunit	unknown	unknown	gnl\|CDD\|224636
NZ_CP050116.1\|WP_027480270.1\|518272_519025_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226222
NZ_CP050116.1\|WP_166466052.1\|504167_504809_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|223282
NZ_CP050116.1\|WP_034350859.1\|515534_516944_+\|DUF4403-family-protein	unknown	unknown	gnl\|CDD\|379578
NZ_CP050116.1\|WP_051618895.1\|511688_512675_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|235736
NZ_CP050116.1\|WP_010889218.1\|510033_511497_+\|sigma-54-interacting-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224160
NZ_CP050116.1\|WP_027480271.1\|518007_518244_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050116.1\|WP_034350861.1\|514875_515313_-\|YjbQ-family-protein	unknown	unknown	gnl\|CDD\|223509
NZ_CP050116.1\|WP_034350892.1\|502427_503051_+\|DNA-3-methyladenine-glycosylase-2-family-protein	unknown	unknown	gnl\|CDD\|223200
NZ_CP050116.1\|WP_166479960.1\|517555_517996_+\|CAP-domain-containing-protein	unknown	unknown	gnl\|CDD\|225218
NZ_CP050116.1\|WP_027480276.1\|507037_507763_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224045
NZ_CP050116.1\|WP_010889215.1\|508070_508436_+\|ferredoxin	unknown	unknown	gnl\|CDD\|225945
NZ_CP050116.1\|WP_010889221.1\|513758_514829_-\|nitric-oxide-synthase-oxygenase	unknown	unknown	gnl\|CDD\|226804
NZ_CP050116.1\|WP_027480277.1\|505060_505933_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238563
NZ_CP050116.1\|WP_034350872.1\|503175_503859_-\|flavin-reductase-family-protein	unknown	unknown	gnl\|CDD\|224766
NZ_CP050116.1\|WP_166479959.1\|516953_517367_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237865
NZ_CP050116.1\|WP_027480273.1\|512755_513634_-\|membrane-protein	unknown	unknown	gnl\|CDD\|282131
NZ_CP050116.1\|WP_162177772.1\|508505_509423_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP050116.1\|WP_010889207.1\|500604_502341_+\|NAD-dependent-malic-enzyme	gnl\|CDD\|237414	PRK13529, PRK13529, oxaloacetate-decarboxylating malate dehydrogenase.	0
NZ_CP050116.1\|WP_034350864.1\|505944_506946_+\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	1.80536e-79
NZ_CP050116.1\|WP_034350868.1\|503915_504155_+\|exodeoxyribonuclease-VII-small-subunit	gnl\|CDD\|224636	COG1722, XseB, Exonuclease VII small subunit [DNA replication, recombination, and repair].	9.04705e-15
NZ_CP050116.1\|WP_027480270.1\|518272_519025_+\|hypothetical-protein	gnl\|CDD\|226222	COG3698, COG3698, Predicted periplasmic protein [Function unknown].	4.96726e-128
NZ_CP050116.1\|WP_166466052.1\|504167_504809_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|223282	COG0204, PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism].	4.70888e-40
NZ_CP050116.1\|WP_034350859.1\|515534_516944_+\|DUF4403-family-protein	gnl\|CDD\|379578	pfam14356, DUF4403, Domain of unknown function (DUF4403). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 455 and 518 amino acids in length. There is a single completely conserved residue W that may be functionally important.	3.26493e-117
NZ_CP050116.1\|WP_051618895.1\|511688_512675_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|235736	PRK06196, PRK06196, oxidoreductase; Provisional.	8.48585e-169
NZ_CP050116.1\|WP_010889218.1\|510033_511497_+\|sigma-54-interacting-transcriptional-regulator	gnl\|CDD\|224160	COG1239, ChlI, Mg-chelatase subunit ChlI [Coenzyme metabolism].	1.25577e-118
NZ_CP050116.1\|WP_034350861.1\|514875_515313_-\|YjbQ-family-protein	gnl\|CDD\|223509	COG0432, COG0432, Uncharacterized conserved protein [Function unknown].	3.45048e-62
NZ_CP050116.1\|WP_034350892.1\|502427_503051_+\|DNA-3-methyladenine-glycosylase-2-family-protein	gnl\|CDD\|223200	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair].	2.60755e-57
NZ_CP050116.1\|WP_166479960.1\|517555_517996_+\|CAP-domain-containing-protein	gnl\|CDD\|225218	COG2340, COG2340, Uncharacterized protein with SCP/PR1 domains [Function unknown].	1.20007e-30
NZ_CP050116.1\|WP_027480276.1\|507037_507763_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	1.77387e-96
NZ_CP050116.1\|WP_010889215.1\|508070_508436_+\|ferredoxin	gnl\|CDD\|225945	COG3411, COG3411, Ferredoxin [Energy production and conversion].	5.51703e-24
NZ_CP050116.1\|WP_010889221.1\|513758_514829_-\|nitric-oxide-synthase-oxygenase	gnl\|CDD\|226804	COG4362, COG4362, Nitric oxide synthase, oxygenase domain [Inorganic ion transport and metabolism / Amino acid transport and metabolism].	0
NZ_CP050116.1\|WP_027480277.1\|505060_505933_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238563	cd01143, YvrC, Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.	4.66555e-71
NZ_CP050116.1\|WP_034350872.1\|503175_503859_-\|flavin-reductase-family-protein	gnl\|CDD\|224766	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only].	2.11165e-37
NZ_CP050116.1\|WP_166479959.1\|516953_517367_+\|hypothetical-protein	gnl\|CDD\|237865	PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional.	8.52415e-06
NZ_CP050116.1\|WP_027480273.1\|512755_513634_-\|membrane-protein	gnl\|CDD\|282131	pfam04228, Zn_peptidase, Putative neutral zinc metallopeptidase. Members of this family have a predicted zinc binding motif characteristic of neutral zinc metallopeptidases (Prosite:PDOC00129).	1.10849e-153

>NZ_CP050116.1|WP_162177772.1|508505_509423_+|hypothetical-protein
MLGGAQAQGTQAAPVTGAPLFERLSPAERQLLLSVAGVSSGDQFQPGRLLPGLPFPAPALPGQQVIGSVEQSDGIRVVVRTSLEANAAQQTAEKALRAAGWQNLYPGVDNGGLIFQSSPTEQYVSPLCRPGVPGSLTVFAFESEPGSSQVSYQYSSLGAQGCPANMPQEDPTQLNFYAPYRNQTVYRPADRLQERGVKLPRLAAPEGAQVEATNLTSGDTELTAYTSVYGTQSTETLRQHYAAALQAQGWQLVDTRTLAGQSVTRFTFRAGKEEGVGTLSLKARTDLKDTTRPPRHDVQLELQLP
>NZ_CP050116.1|WP_010889215.1|508070_508436_+|ferredoxin
MTNGPKYFRTSGHLLLCRGSSCQQRNSVLLHKALWNALERDGLAYYKQGGSVRLTDSGCLGACKFGPTLCVYRERDGQLEQAWYAGVDFPLARAVAQAVHEGGELPDQGRYGGSPDNAGNP
>NZ_CP050116.1|WP_027480276.1|507037_507763_+|ATP-binding-cassette-domain-containing-protein
MRGVDATFRTGEFAAIIGPNGAGKSTLLRALLGLSGLEAGEVRLNGRPLRTWNRAERSRRLAYLAQSEPLPPETRVRDVVTLGRGAGEWRWGLLPTRPWSEADEEAVNRALDRTDTRRFEDRRVSELSGGEGQRVALARALAAGPELLLLDEPTNHLDLAYTLDLMRSLRREVEAGLGVIAVLHDLNLAARADRLLLLSRGEVLATGTPAEVLTPEHIAAAYGVRVDVTEQAGRPLVIPAD
>NZ_CP050116.1|WP_034350864.1|505944_506946_+|iron-ABC-transporter-permease
MSLSARRSRVYLASGTALLLALLGLAVVLGTGLGSVNIAPGAVLTALWQGVTRQALAGDAVIIWQIRLPRVVMGVLVGAALSVCGGAFQGVFRNPLSDPYLLGVASGAGLGATVALTLGWPHALIPLAALLTALGAVAATLLLAREGRRFPPTRLILSGVVVGSVLSAATTALMLRGEDRARQVLAYTLGDLSFSGWRDVLTVLPYVGLGCGALLLLARALDTLQLGDLTARSLGVPVERLRLLVVACASLATAGAVAYVGIIGFVGLIVPHLVRLAFGAGHRTLLPLSGLLGGSLLVLADLLARTTPLSQVGIVTTLLGGPFFLWLLRRERG
>NZ_CP050116.1|WP_027480277.1|505060_505933_+|ABC-transporter-substrate-binding-protein
MRTFSALLLTLSAGLATSASAVRYPLTLTDDLGRKVTIKAEPQRLISVLPSTSETLCAIGACNKLVGVDDYSDFPAQVAKLPKVGGLYDPNVEKIVSLKPDLVIVSKYGKLTEQLEQLGVPTVAVNPETYADVFSKTTLLGKIVNREAQAKALNISMQREIARVEILTKNAARKPLTYFEIDPTPYSIGPNSFMGVLLTKAGARNVIPASLGDFPKIDPELIVKQNPQLILGTDLKTASARPGWQNVAAVKSGKVIAIPKELNTILGRPGPRLPQALRGLAKIVHPELFR
>NZ_CP050116.1|WP_166466052.1|504167_504809_+|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MLWSMTGGATPATPPTAAPEERFPHVNPLVYRFVVDVTFLPVLLTGMHIDVHGREHVPPPGTPLVVAANHQSALDPFLIARALPPGRYLQFMAKRELFVPVIGDIIRAGGSFPVDRESNDVGAIRTSLRILKAGGTVGIFPQGTRGGQELHGGAALIAARGRAPILPAGISHDGKRWVVRFGEPLPARGGIKANTEELGRRLQVLAQPVGRHL
>NZ_CP050116.1|WP_034350868.1|503915_504155_+|exodeoxyribonuclease-VII-small-subunit
MSAPTSYRDAYARLSRIAAELETGEADLDRVLPLLEEARAAYAECKGRIEAVRGVLSGDWGQDAAQDPEEGEEDEDDAF
>NZ_CP050116.1|WP_034350872.1|503175_503859_-|flavin-reductase-family-protein
MSHTHFDLTALPQSARYKLLTATVVPRPIAWVGTRGSGETGKLGFNLAPYSFFGLMGSEPPVVAFAPGDRADGTPKDSALNIGSGGEFTVSLVSAALAAVMNLSATDFPRGMDEAQALGIQLAPGRRVQVPHVAAAPAALECREVQTVSIGRTRIILGEVLGLWLREDAVLDAEKHHVDTAALDLVGRMGGRGTYTHTRDTFELGRLTYAQWQEQWQAREEGDHSEK
>NZ_CP050116.1|WP_034350892.1|502427_503051_+|DNA-3-methyladenine-glycosylase-2-family-protein
MPAVLPPLTDHAGAVAHLSRDPVLAQVTSLCGELPVLAPTPDPFGRLVRSVAGQQLSVKAAQAIYGRLEGLPGGVVPAALLKVSGDDLRGVGLSWAKVRTVQAAAAAAVSGQIDFAHLSGQPDELVIAELVQLPGIGRWTAEMFLLFALARPDVFSSGDLALRQGVERLYPGEDWRDVTARWAPYRSLASRYLWANSARMQAGGAPL
>NZ_CP050116.1|WP_010889207.1|500604_502341_+|NAD-dependent-malic-enzyme
MPKSPPVSRYYDVKRDEQGQRYIEVKVTGLALLQNPLLNKTTGFTPEERRELGLEGLIPPHISSFEEQKHRTYLRYLEAPTDLARHEYLRALQDRNEVLYYAILEDHLEEMLPIIYTPTVGEAVKLYSNNYRYPRGFTVSTNDIERVEEMLDNVTVNDVRMIVATDSSAILGIGDQGFGGMAISIGKLSLYTAAGGVGPDKTLPVELDVGTNRQDLIDDPLYLGVHHRRWQGQQYDEFVDAFVEAVSARYPKAIIQWEDFSRGTAFRVLERYRKVVPSFNDDIQGTGAMALAGLLRASRMKGEFLTEQVFVVVGAGAAGIGVASAIRQGLEAEGLAPEEAGRRVYVVDRYGLLMEGQPDLEPQQMPFVRRRGDLEGWTFGGEYPTLHEVLVHARATALLGFTGVPGLFRQEDIEAMLAHTPRPIVFPLSNPSSHVEARPSDIVAWTRGGAIVATGSPFPDVPYDNERIPVGQGNNAFIFPGLGFGAVVSRAREITDNMVMAAALTLAEYTTQHHPHLVYPPISELRELSIHVAVRVAEQAIQDGVCAERRVRNMDREQLAALIRERAWLPRPLPLRRE
>NZ_CP050116.1|WP_010889218.1|510033_511497_+|sigma-54-interacting-transcriptional-regulator
MTAQTTAQPKARTLGELLQTPEYAGRKPFDGQRRLVQDEVRDNLTRKLRSGEELFPGVVGYDDTVIPQLVNALLARQNFILLGLRGQAKSRILRAITELLDPEVPVIDGVDMPDDPLNPIGAEGQHLLEAHGMELPIRWLPRADRYVEKLATPDVTVADLIGDVDPIKAARLGTSLGDTRSMHFGLLPRANRGIFAVNELADLSPKVQVALFNILQEGDVQIKGYPIRLELDVMLVFSANPEDYTARGKIVTPLKDRIGSEIRTHYPTDVQLGMDITAQEAVKEEGVVVPPFIAELIEDIAFQAREDGRIDKLSGVSQRLPISLMELACANAERRSLVSGDAPVVRVTDVYAGLPAITGKMELEYEGELKGADNVAKDLIRKAAGAAYARSYGSADTRELEKWFDQGNVFRFPQGGDASAALKATGEVPGLSDFAAQVAGSSDDAVRVSAAEFILEGLYGRKKLSRAEELYAAPEPELKRERGGRWN
>NZ_CP050116.1|WP_051618895.1|511688_512675_-|SDR-family-NAD(P)-dependent-oxidoreductase
MTHGNSSQSDRPRIISPLAPRADAAEVVRGVDLKGKTAVVTGGASGLGTETARALLLAGAHVILPVRDRAKGERVAAELRQSTGGTVELVDLDLGSLASVRRGAAEIRQLAPRIHILINNAGVMATPQSRTVDGFETQFGTNHLGHFLLTRELLPALMAAAPARVVALTSSGHRRSDIVWDDLNFERRPYDPWDAYGQSKTANALFAVGLTQRYADQGLTANAVHPGGIMTGLQKFVPLEDQRRMGWQDEHGTLNPVFKTPAEGASTSVWAATSPQLYGVGGLFLEDLQHSTPLDESAPNPLFGYKPYALDHESARRLWALSEALVGE
>NZ_CP050116.1|WP_027480273.1|512755_513634_-|membrane-protein
MDWRNLPGGGNIEDRRGGGGLPGGGLAVGGGIGGLILALIAYFFGIDPSVVTGGGQQQSPAQTQAQSQAQGGQAEDEDYQFADRIVASTDRTWTQIFQQSNRQYTKPTLVLFSRSVSSACGQASSATGPFYCPLDSKLYLDTSFFNLMQRQLGGGGDFAYSYVIAHEVGHHVQNELGIAEQVERKQRAARSEAEQNSYSVRLELQADCFAGVWGNSVKGREAANLTEDDVREAINTAAAIGDDTLQRQGQGMVVPDSFTHGTSQQRVNWFMRGFQTGNPNQCDTFSAAYNQL
>NZ_CP050116.1|WP_010889221.1|513758_514829_-|nitric-oxide-synthase-oxygenase
MSCPAAAVLTPDMRAFLRRFHEEMGEPGLPARLRAVEEAGLWWPTSAELTWGAKVAWRNSTRCVGRLYWEALSVRDLRELNTAQAVYEALLQHLDDAFCGGHIRPVISVFGPGVRLHNPQLIRYADDPINADFVDKLRRFGWQPRGERFEVLPLLIEVNGRAELFSLPPQAVQEVAITHPVCLGIGELGLRWHALPVISDMHLDIGGLHLPCAFSGWYVQTEIAARDLADVGRYDQLPAVARALGLDTSRERTLWRDRALVELNVAVLHSFDAAGVKLADHHTVTAHHVRFEEREARAGREVRGKWSWLVPPLSPATTPLWSRRYRAREESPRFVRARCPFHTPTVHASTGHAPTG
>NZ_CP050116.1|WP_034350861.1|514875_515313_-|YjbQ-family-protein
MWTQHQLTLPPQRRGFHLITREVVAAVPELAGVQVGLLHVWIQHTSASLTVNENASPDVRRDFERYFNHAVPDGWREFEHTLEGPDDMAAHIKASVLGPSLLLPVSGGRLALGRWQGIFLCEHRDHASARRLVLTLQGEEKQAGK
>NZ_CP050116.1|WP_034350859.1|515534_516944_+|DUF4403-family-protein
MRRVLTPLLLTLGMTLPAALPTAEAASTLTVPVHVPLAGVQQAANAQVPQEFARVDQTQSLLGGAVQVRVRGTVTRTAQVSVKADGDALVLSVPIRAEFRAEPGGALASLARNFGGAATITLRLTPYVTPTWEVGVRASAEHRWTDPLAVDLGRGLKLSVQSLVDPQVRAQLDKLTAQIEQQVREGADLRRRAGTLWARAQRPWPLPTPEPAYALVRPLGLGVTPPRLTPDALKLDVGATLDLGAALGQPPATVKVSPLPPLKVGPLSAPGIELSVPLRLPYPELSALAARYAAQQTLTLPVPGSPVLRVTGVQVQPVGTRLRVSVQARLDGPLGLSLRATTDVTGTPAVSADGRTVSLRDVEVETRREGLTGKAVAWLADARAQAFVTRAAHFDLGPLLARAQAQAQSKLPFTPLPGVMVGGQVGALSVQSMAVQPAALVVTARAAGRLQAQVNAGELVDSGRGNGGR
>NZ_CP050116.1|WP_166479959.1|516953_517367_+|hypothetical-protein
MRRLSLLLVALLGGVAPLARAQVQVIPFPGPAPAPVAPAPAPVPPPPPSAPAAAPALPVAPAPAPVAQSTCAPALPALHLAAADIAAGADAYRAVTNRAGAPSQFRYWKVSPRSSPPPCASCVSGGLSATAPRRAAR
>NZ_CP050116.1|WP_166479960.1|517555_517996_+|CAP-domain-containing-protein
MTAAAPAAPVPGPLGELLAGINAARTQGRRCGGVQRPPVPPLVVDARLSKAAQEHAEAMVAQGFAEHVNPRTRSTPESRARAQGFSGRVSENIRYGTPTVDGALIWWLGSAVHCTSLMSRDWTHMGAGSAVQNDQSSFWVLVLGRE
>NZ_CP050116.1|WP_027480271.1|518007_518244_-|hypothetical-protein
MFSALWTFLRELLLALIGQPSRPGPTRQEQEAELAQREALRGRQAPTSAWDAARQVGAEVGKAAIWQPTDAPRRKKKD
>NZ_CP050116.1|WP_027480270.1|518272_519025_+|hypothetical-protein
MGPMSRFAPATPLLLSLLLTSCSPAQGVRVERITGGGMLYTVATVDPARDQLTLHWLNPATGKPYSSFAQLGSRLGKQGKKLLFATNSGIYMPGPKPLGLHVEGGKTLVGLNNAGKGGGNFALLPNGVFWLRGKKAGVTETQAYRKLGLAPDYATQSGPLLVANGKLHPDFNKSGTSFKVRSGVGVCGGGKVRFAISAGPVNFYSFATFFRDTLGCPDALYLDGSISAYATPDTDTQFTEFAGIWAVTAR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

852811 : 862012

Roseobacter_phage(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010886939.1\|852811_854200_-	nicotinate phosphoribosyltransferase	A0A1B0V392	Roseobacter_phage	5.0e-125	51.1
WP_010886940.1\|854252_855101_-	phosphoprotein phosphatase	A0A2H4PRN7	Proteus_phage	2.0e-07	25.0
WP_010886941.1\|855097_855394_-	hypothetical protein	NA	NA	NA	NA
WP_010886942.1\|855437_856910_-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase	NA	NA	NA	NA
WP_010886943.1\|856985_857609_-	deoxynucleoside kinase	C1KFI3	Lactobacillus_virus	9.7e-20	31.3
WP_010886944.1\|857608_858226_-	deoxynucleoside kinase	A0A249XZR7	Enterococcus_phage	5.0e-08	24.5
WP_027480282.1\|858308_859409_-\|protease	serine protease	A0A1B1IT49	uncultured_Mediterranean_phage	5.2e-08	22.7
WP_027480281.1\|859405_859612_-	FmdB family transcriptional regulator	NA	NA	NA	NA
WP_027480280.1\|860191_862012_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	M1HVL7	Paramecium_bursaria_Chlorella_virus	2.2e-112	40.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP050118

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP050116

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection