CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NZ_CP050121	Deinococcus radiodurans strain BND-54 chromosome 2, complete sequence	0 crisprs	csa3	0	0	0
NZ_CP050123	Deinococcus radiodurans strain BND-54 plasmid pCP1, complete sequence	0 crisprs	NA	0	0	0
NZ_CP050120	Deinococcus radiodurans strain BND-54 chromosome 1, complete sequence	1 crisprs	WYL,c2c9_V-U4,csa3,DEDDh	0	0	1
NZ_CP050122	Deinococcus radiodurans strain BND-54 plasmid pMP1, complete sequence	1 crisprs	NA	1	1	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP050120_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP050120_1

171870-171958

Orphan

Consensus_repeat	Method
GGGTGAGGGTCACGTCCTTGCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP050120_1

>merge|NZ_CP050120|1|171870-171958|CRISPRCasFinder
GGGTGAGGGTCACGTCCTTGCCGTCCACCTGCCCGCCGATGCGCCCGCTGAGCTGCTCGCCGCGCCGGGTGAGGGTCACGTCCTTGCCC

>NZ_CP050120|1|1|171870-171958|CRISPRCasFinder
GGGTGAGGGTCACGTCCTTGCCG	TCCACCTGCCCGCCGATGCGCCCGCTGAGCTGCTCGCCGCGCC
GGGTGAGGGTCACGTCCTTGCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP050120.1\|WP_162177772.1\|172317_173235_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050120.1\|WP_051618898.1\|181298_181997_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224627
NZ_CP050120.1\|WP_027480277.1\|175806_176679_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238563
NZ_CP050120.1\|WP_166466052.1\|176929_177571_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|223282
NZ_CP050120.1\|WP_034350892.1\|178686_179310_-\|DNA-3-methyladenine-glycosylase-2-family-protein	unknown	unknown	gnl\|CDD\|223200
NZ_CP050120.1\|WP_010889221.1\|166911_167982_+\|nitric-oxide-synthase-oxygenase	unknown	unknown	gnl\|CDD\|226804
NZ_CP050120.1\|WP_166466053.1\|177555_177822_-\|exodeoxyribonuclease-VII-small-subunit	unknown	unknown	gnl\|CDD\|224636
NZ_CP050120.1\|WP_034350872.1\|177878_178562_+\|flavin-reductase-family-protein	unknown	unknown	gnl\|CDD\|224766
NZ_CP050120.1\|WP_027480271.1\|163496_163733_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050120.1\|WP_034350864.1\|174793_175795_-\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
NZ_CP050120.1\|WP_027480276.1\|173976_174702_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224045
NZ_CP050120.1\|WP_034350859.1\|164796_166206_-\|DUF4403-family-protein	unknown	unknown	gnl\|CDD\|379578
NZ_CP050120.1\|WP_166466051.1\|163744_164620_-\|CAP-domain-containing-protein	unknown	unknown	gnl\|CDD\|225218
NZ_CP050120.1\|WP_027480273.1\|168106_168985_+\|membrane-protein	unknown	unknown	gnl\|CDD\|282131
NZ_CP050120.1\|WP_010889207.1\|179396_181133_-\|NAD-dependent-malic-enzyme	unknown	unknown	gnl\|CDD\|237414
NZ_CP050120.1\|WP_010889226.1\|161454_162651_-\|acetate-kinase	unknown	unknown	gnl\|CDD\|234680
NZ_CP050120.1\|WP_027480270.1\|162715_163468_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226222
NZ_CP050120.1\|WP_034350861.1\|166427_166865_+\|YjbQ-family-protein	unknown	unknown	gnl\|CDD\|223509
NZ_CP050120.1\|WP_051618895.1\|169065_170052_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|235736
NZ_CP050120.1\|WP_010889227.1\|160870_161458_-\|UbiX-family-flavin-prenyltransferase	unknown	unknown	gnl\|CDD\|223241

Protein	Function_ID	Function_description	E-value
NZ_CP050120.1\|WP_027480270.1\|162715_163468_-\|hypothetical-protein	gnl\|CDD\|226222	COG3698, COG3698, Predicted periplasmic protein [Function unknown].	4.96726e-128
NZ_CP050120.1\|WP_027480277.1\|175806_176679_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238563	cd01143, YvrC, Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.	4.66555e-71
NZ_CP050120.1\|WP_166466052.1\|176929_177571_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|223282	COG0204, PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism].	4.70888e-40
NZ_CP050120.1\|WP_034350892.1\|178686_179310_-\|DNA-3-methyladenine-glycosylase-2-family-protein	gnl\|CDD\|223200	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair].	2.60755e-57
NZ_CP050120.1\|WP_010889221.1\|166911_167982_+\|nitric-oxide-synthase-oxygenase	gnl\|CDD\|226804	COG4362, COG4362, Nitric oxide synthase, oxygenase domain [Inorganic ion transport and metabolism / Amino acid transport and metabolism].	0
NZ_CP050120.1\|WP_166466053.1\|177555_177822_-\|exodeoxyribonuclease-VII-small-subunit	gnl\|CDD\|224636	COG1722, XseB, Exonuclease VII small subunit [DNA replication, recombination, and repair].	9.1607e-16
NZ_CP050120.1\|WP_034350872.1\|177878_178562_+\|flavin-reductase-family-protein	gnl\|CDD\|224766	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only].	2.11165e-37
NZ_CP050120.1\|WP_051618898.1\|181298_181997_+\|HD-domain-containing-protein	gnl\|CDD\|224627	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism].	4.8168e-65
NZ_CP050120.1\|WP_034350864.1\|174793_175795_-\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	1.80536e-79
NZ_CP050120.1\|WP_034350859.1\|164796_166206_-\|DUF4403-family-protein	gnl\|CDD\|379578	pfam14356, DUF4403, Domain of unknown function (DUF4403). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 455 and 518 amino acids in length. There is a single completely conserved residue W that may be functionally important.	3.26493e-117
NZ_CP050120.1\|WP_166466051.1\|163744_164620_-\|CAP-domain-containing-protein	gnl\|CDD\|225218	COG2340, COG2340, Uncharacterized protein with SCP/PR1 domains [Function unknown].	4.73272e-34
NZ_CP050120.1\|WP_027480273.1\|168106_168985_+\|membrane-protein	gnl\|CDD\|282131	pfam04228, Zn_peptidase, Putative neutral zinc metallopeptidase. Members of this family have a predicted zinc binding motif characteristic of neutral zinc metallopeptidases (Prosite:PDOC00129).	1.10849e-153
NZ_CP050120.1\|WP_010889207.1\|179396_181133_-\|NAD-dependent-malic-enzyme	gnl\|CDD\|237414	PRK13529, PRK13529, oxaloacetate-decarboxylating malate dehydrogenase.	0
NZ_CP050120.1\|WP_010889226.1\|161454_162651_-\|acetate-kinase	gnl\|CDD\|234680	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed.	0
NZ_CP050120.1\|WP_027480276.1\|173976_174702_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	1.77387e-96
NZ_CP050120.1\|WP_034350861.1\|166427_166865_+\|YjbQ-family-protein	gnl\|CDD\|223509	COG0432, COG0432, Uncharacterized conserved protein [Function unknown].	3.45048e-62
NZ_CP050120.1\|WP_051618895.1\|169065_170052_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|235736	PRK06196, PRK06196, oxidoreductase; Provisional.	8.48585e-169
NZ_CP050120.1\|WP_010889227.1\|160870_161458_-\|UbiX-family-flavin-prenyltransferase	gnl\|CDD\|223241	COG0163, UbiX family flavin prenyltransferase [Coenzyme transport and metabolism].	1.50923e-95

>NZ_CP050120.1|WP_051618895.1|169065_170052_+|SDR-family-NAD(P)-dependent-oxidoreductase
MTHGNSSQSDRPRIISPLAPRADAAEVVRGVDLKGKTAVVTGGASGLGTETARALLLAGAHVILPVRDRAKGERVAAELRQSTGGTVELVDLDLGSLASVRRGAAEIRQLAPRIHILINNAGVMATPQSRTVDGFETQFGTNHLGHFLLTRELLPALMAAAPARVVALTSSGHRRSDIVWDDLNFERRPYDPWDAYGQSKTANALFAVGLTQRYADQGLTANAVHPGGIMTGLQKFVPLEDQRRMGWQDEHGTLNPVFKTPAEGASTSVWAATSPQLYGVGGLFLEDLQHSTPLDESAPNPLFGYKPYALDHESARRLWALSEALVGE
>NZ_CP050120.1|WP_027480273.1|168106_168985_+|membrane-protein
MDWRNLPGGGNIEDRRGGGGLPGGGLAVGGGIGGLILALIAYFFGIDPSVVTGGGQQQSPAQTQAQSQAQGGQAEDEDYQFADRIVASTDRTWTQIFQQSNRQYTKPTLVLFSRSVSSACGQASSATGPFYCPLDSKLYLDTSFFNLMQRQLGGGGDFAYSYVIAHEVGHHVQNELGIAEQVERKQRAARSEAEQNSYSVRLELQADCFAGVWGNSVKGREAANLTEDDVREAINTAAAIGDDTLQRQGQGMVVPDSFTHGTSQQRVNWFMRGFQTGNPNQCDTFSAAYNQL
>NZ_CP050120.1|WP_010889221.1|166911_167982_+|nitric-oxide-synthase-oxygenase
MSCPAAAVLTPDMRAFLRRFHEEMGEPGLPARLRAVEEAGLWWPTSAELTWGAKVAWRNSTRCVGRLYWEALSVRDLRELNTAQAVYEALLQHLDDAFCGGHIRPVISVFGPGVRLHNPQLIRYADDPINADFVDKLRRFGWQPRGERFEVLPLLIEVNGRAELFSLPPQAVQEVAITHPVCLGIGELGLRWHALPVISDMHLDIGGLHLPCAFSGWYVQTEIAARDLADVGRYDQLPAVARALGLDTSRERTLWRDRALVELNVAVLHSFDAAGVKLADHHTVTAHHVRFEEREARAGREVRGKWSWLVPPLSPATTPLWSRRYRAREESPRFVRARCPFHTPTVHASTGHAPTG
>NZ_CP050120.1|WP_034350861.1|166427_166865_+|YjbQ-family-protein
MWTQHQLTLPPQRRGFHLITREVVAAVPELAGVQVGLLHVWIQHTSASLTVNENASPDVRRDFERYFNHAVPDGWREFEHTLEGPDDMAAHIKASVLGPSLLLPVSGGRLALGRWQGIFLCEHRDHASARRLVLTLQGEEKQAGK
>NZ_CP050120.1|WP_034350859.1|164796_166206_-|DUF4403-family-protein
MRRVLTPLLLTLGMTLPAALPTAEAASTLTVPVHVPLAGVQQAANAQVPQEFARVDQTQSLLGGAVQVRVRGTVTRTAQVSVKADGDALVLSVPIRAEFRAEPGGALASLARNFGGAATITLRLTPYVTPTWEVGVRASAEHRWTDPLAVDLGRGLKLSVQSLVDPQVRAQLDKLTAQIEQQVREGADLRRRAGTLWARAQRPWPLPTPEPAYALVRPLGLGVTPPRLTPDALKLDVGATLDLGAALGQPPATVKVSPLPPLKVGPLSAPGIELSVPLRLPYPELSALAARYAAQQTLTLPVPGSPVLRVTGVQVQPVGTRLRVSVQARLDGPLGLSLRATTDVTGTPAVSADGRTVSLRDVEVETRREGLTGKAVAWLADARAQAFVTRAAHFDLGPLLARAQAQAQSKLPFTPLPGVMVGGQVGALSVQSMAVQPAALVVTARAAGRLQAQVNAGELVDSGRGNGGR
>NZ_CP050120.1|WP_166466051.1|163744_164620_-|CAP-domain-containing-protein
MPVAPAPAPVAQSTCAPALPALHLAAADIAAGADAYRAVTNRAGAPSQFRYWKVSPAQLPATVRELCQRGFVGYGTAPSGSLMIVLGARWPGGTPAEASAPASPVAAAPAPVAAAPVVLAPAAPAPAAPAPSSRPPTSPTLSSPPVTAAAPAAPVPGPLGELLAGINAARTQGRRCGGVQRPPVPPLVVDARLSKAAQEHAEAMVAQGFAEHVNPRTRSTPESRARAQGFSGRVSENIRYGTPTVDGALIWWLGSAVHCTSLMSRDWTHMGAGSAVQNDQSSFWVLVLGRE
>NZ_CP050120.1|WP_027480271.1|163496_163733_+|hypothetical-protein
MFSALWTFLRELLLALIGQPSRPGPTRQEQEAELAQREALRGRQAPTSAWDAARQVGAEVGKAAIWQPTDAPRRKKKD
>NZ_CP050120.1|WP_027480270.1|162715_163468_-|hypothetical-protein
MGPMSRFAPATPLLLSLLLTSCSPAQGVRVERITGGGMLYTVATVDPARDQLTLHWLNPATGKPYSSFAQLGSRLGKQGKKLLFATNSGIYMPGPKPLGLHVEGGKTLVGLNNAGKGGGNFALLPNGVFWLRGKKAGVTETQAYRKLGLAPDYATQSGPLLVANGKLHPDFNKSGTSFKVRSGVGVCGGGKVRFAISAGPVNFYSFATFFRDTLGCPDALYLDGSISAYATPDTDTQFTEFAGIWAVTAR
>NZ_CP050120.1|WP_010889226.1|161454_162651_-|acetate-kinase
MWTLVLNSGSSSLKFALLNPASGEVRLSGLAERLGTPAAAVKLEHSGQQESRSLEGGSYDAALGEVLRELETLGMRSAVRAVGHRVVHGGERFSAPVLVTPEVLEAVRACVPLAPLHNPANIVGIEAAQQAFPKLPHVAVFDTAFHQTMPEVAYRYAVPEAWYSQHGVRRYGFHGTSHAYVAGRAAEMLQRPLPTLNLITAHLGNGASVCAVAGGRSVDTSMGLTPLEGLIMGSRSGDVDPGLHDYLARQAGLSLSEITAALNKESGLLGLSGLTNDMRELEKAALTGHRGARLALGAFIYRLAKCMAGMAVALGRVDGVVFTGGIGENSRTVRGETLRRLGVLGLHLDEEANKALPRGDVGVISLPGGPVALVIPTHEELMIARETAVIVGGRGYAL
>NZ_CP050120.1|WP_010889227.1|160870_161458_-|UbiX-family-flavin-prenyltransferase
MSDAPSGPPRLVVGVSGGSGIPYALDILRALRGLDVETHLVVSSGAKRVMSAEGGPQLADLTALASVVHDDRDLAAAVASGSYRTGGMLIVPCSAGTLAKVAHGFADNLISRAAHVTLKERRPLVLVVREDPMPRPMLQNMLAAHDAGATVMSASPGFYHAPESLGELLGFVTARVLDQFGLNAPGFRRWREDEA
>NZ_CP050120.1|WP_162177772.1|172317_173235_-|hypothetical-protein
MLGGAQAQGTQAAPVTGAPLFERLSPAERQLLLSVAGVSSGDQFQPGRLLPGLPFPAPALPGQQVIGSVEQSDGIRVVVRTSLEANAAQQTAEKALRAAGWQNLYPGVDNGGLIFQSSPTEQYVSPLCRPGVPGSLTVFAFESEPGSSQVSYQYSSLGAQGCPANMPQEDPTQLNFYAPYRNQTVYRPADRLQERGVKLPRLAAPEGAQVEATNLTSGDTELTAYTSVYGTQSTETLRQHYAAALQAQGWQLVDTRTLAGQSVTRFTFRAGKEEGVGTLSLKARTDLKDTTRPPRHDVQLELQLP
>NZ_CP050120.1|WP_027480276.1|173976_174702_-|ATP-binding-cassette-domain-containing-protein
MRGVDATFRTGEFAAIIGPNGAGKSTLLRALLGLSGLEAGEVRLNGRPLRTWNRAERSRRLAYLAQSEPLPPETRVRDVVTLGRGAGEWRWGLLPTRPWSEADEEAVNRALDRTDTRRFEDRRVSELSGGEGQRVALARALAAGPELLLLDEPTNHLDLAYTLDLMRSLRREVEAGLGVIAVLHDLNLAARADRLLLLSRGEVLATGTPAEVLTPEHIAAAYGVRVDVTEQAGRPLVIPAD
>NZ_CP050120.1|WP_034350864.1|174793_175795_-|iron-ABC-transporter-permease
MSLSARRSRVYLASGTALLLALLGLAVVLGTGLGSVNIAPGAVLTALWQGVTRQALAGDAVIIWQIRLPRVVMGVLVGAALSVCGGAFQGVFRNPLSDPYLLGVASGAGLGATVALTLGWPHALIPLAALLTALGAVAATLLLAREGRRFPPTRLILSGVVVGSVLSAATTALMLRGEDRARQVLAYTLGDLSFSGWRDVLTVLPYVGLGCGALLLLARALDTLQLGDLTARSLGVPVERLRLLVVACASLATAGAVAYVGIIGFVGLIVPHLVRLAFGAGHRTLLPLSGLLGGSLLVLADLLARTTPLSQVGIVTTLLGGPFFLWLLRRERG
>NZ_CP050120.1|WP_027480277.1|175806_176679_-|ABC-transporter-substrate-binding-protein
MRTFSALLLTLSAGLATSASAVRYPLTLTDDLGRKVTIKAEPQRLISVLPSTSETLCAIGACNKLVGVDDYSDFPAQVAKLPKVGGLYDPNVEKIVSLKPDLVIVSKYGKLTEQLEQLGVPTVAVNPETYADVFSKTTLLGKIVNREAQAKALNISMQREIARVEILTKNAARKPLTYFEIDPTPYSIGPNSFMGVLLTKAGARNVIPASLGDFPKIDPELIVKQNPQLILGTDLKTASARPGWQNVAAVKSGKVIAIPKELNTILGRPGPRLPQALRGLAKIVHPELFR
>NZ_CP050120.1|WP_166466052.1|176929_177571_-|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MLWSMTGGATPATPPTAAPEERFPHVNPLVYRFVVDVTFLPVLLTGMHIDVHGREHVPPPGTPLVVAANHQSALDPFLIARALPPGRYLQFMAKRELFVPVIGDIIRAGGSFPVDRESNDVGAIRTSLRILKAGGTVGIFPQGTRGGQELHGGAALIAARGRAPILPAGISHDGKRWVVRFGEPLPARGGIKANTEELGRRLQVLAQPVGRHL
>NZ_CP050120.1|WP_166466053.1|177555_177822_-|exodeoxyribonuclease-VII-small-subunit
MSAPTSYRDAYARLSRIAAELETGEADLDRVLPLLEEARAAYAECKGRIEAVRGVLSGDWGQDAAQDPEEGRKTRTTPSELPSVCSGP
>NZ_CP050120.1|WP_034350872.1|177878_178562_+|flavin-reductase-family-protein
MSHTHFDLTALPQSARYKLLTATVVPRPIAWVGTRGSGETGKLGFNLAPYSFFGLMGSEPPVVAFAPGDRADGTPKDSALNIGSGGEFTVSLVSAALAAVMNLSATDFPRGMDEAQALGIQLAPGRRVQVPHVAAAPAALECREVQTVSIGRTRIILGEVLGLWLREDAVLDAEKHHVDTAALDLVGRMGGRGTYTHTRDTFELGRLTYAQWQEQWQAREEGDHSEK
>NZ_CP050120.1|WP_034350892.1|178686_179310_-|DNA-3-methyladenine-glycosylase-2-family-protein
MPAVLPPLTDHAGAVAHLSRDPVLAQVTSLCGELPVLAPTPDPFGRLVRSVAGQQLSVKAAQAIYGRLEGLPGGVVPAALLKVSGDDLRGVGLSWAKVRTVQAAAAAAVSGQIDFAHLSGQPDELVIAELVQLPGIGRWTAEMFLLFALARPDVFSSGDLALRQGVERLYPGEDWRDVTARWAPYRSLASRYLWANSARMQAGGAPL
>NZ_CP050120.1|WP_010889207.1|179396_181133_-|NAD-dependent-malic-enzyme
MPKSPPVSRYYDVKRDEQGQRYIEVKVTGLALLQNPLLNKTTGFTPEERRELGLEGLIPPHISSFEEQKHRTYLRYLEAPTDLARHEYLRALQDRNEVLYYAILEDHLEEMLPIIYTPTVGEAVKLYSNNYRYPRGFTVSTNDIERVEEMLDNVTVNDVRMIVATDSSAILGIGDQGFGGMAISIGKLSLYTAAGGVGPDKTLPVELDVGTNRQDLIDDPLYLGVHHRRWQGQQYDEFVDAFVEAVSARYPKAIIQWEDFSRGTAFRVLERYRKVVPSFNDDIQGTGAMALAGLLRASRMKGEFLTEQVFVVVGAGAAGIGVASAIRQGLEAEGLAPEEAGRRVYVVDRYGLLMEGQPDLEPQQMPFVRRRGDLEGWTFGGEYPTLHEVLVHARATALLGFTGVPGLFRQEDIEAMLAHTPRPIVFPLSNPSSHVEARPSDIVAWTRGGAIVATGSPFPDVPYDNERIPVGQGNNAFIFPGLGFGAVVSRAREITDNMVMAAALTLAEYTTQHHPHLVYPPISELRELSIHVAVRVAEQAIQDGVCAERRVRNMDREQLAALIRERAWLPRPLPLRRE
>NZ_CP050120.1|WP_051618898.1|181298_181997_+|HD-domain-containing-protein
MALRLPQALPAALDELPLWQERVRLMVKPRRYEHVLRVAELAREIAEAAALSPEEIAQAYAAGILHDIARDLPESELLRLAPPECDIDSRHPLALHGRAARTLLERWGYRDERVLAAVEDHTTGPRGGNRVAACVYIADVSEPGRGVNADIRELALNDLGAALRRSVTSKVTYLQGKGIPVHPRTLAAYHDLEAYALEAVPALTLATLAEASPPESQCVEPLLAETHLKGSD

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2468380 : 2477580

Paramecium_bursaria_Chlorella_virus(16.67%)

protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_027480280.1\|2468380_2470201_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	M1HVL7	Paramecium_bursaria_Chlorella_virus	2.2e-112	40.5
WP_027480281.1\|2470780_2470987_+	FmdB family transcriptional regulator	NA	NA	NA	NA
WP_027480282.1\|2470983_2472084_+\|protease	serine protease	A0A1B1IT49	uncultured_Mediterranean_phage	5.2e-08	22.7
WP_010886944.1\|2472166_2472784_+	deoxynucleoside kinase	A0A249XZR7	Enterococcus_phage	5.0e-08	24.5
WP_010886943.1\|2472783_2473407_+	deoxynucleoside kinase	C1KFI3	Lactobacillus_virus	9.7e-20	31.3
WP_010886942.1\|2473482_2474955_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase	NA	NA	NA	NA
WP_010886941.1\|2474998_2475295_+	hypothetical protein	NA	NA	NA	NA
WP_010886940.1\|2475291_2476140_+	phosphoprotein phosphatase	A0A2H4PRN7	Proteus_phage	2.0e-07	25.0
WP_010886939.1\|2476191_2477580_+	nicotinate phosphoribosyltransferase	A0A1B0V392	Roseobacter_phage	5.0e-125	51.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP050122

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP050122_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP050122_1

91118-91196

Orphan

Consensus_repeat	Method
GACTTGTAAAGCTGCGAAGCAGAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP050122_1

>merge|NZ_CP050122|1|91118-91196|CRISPRCasFinder
GACTTGTAAAGCTGCGAAGCAGAGCGGAGCGAGAGGCAAAAGAGACGTGCTGCGGGACTTGCAAAGCTGCGAAGCAGAG

>NZ_CP050122|1|1|91118-91196|CRISPRCasFinder
GACTTGTAAAGCTGCGAAGCAGAG	CGGAGCGAGAGGCAAAAGAGACGTGCTGCGG
GACTTGCAAAGCTGCGAAGCAGAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP050122.1\|WP_010884075.1\|112619_112940_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050122.1\|WP_162177805.1\|86223_88224_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050122.1\|WP_010884049.1\|88577_89786_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223650
NZ_CP050122.1\|WP_149358002.1\|81594_82110_-\|transposase	unknown	unknown	gnl\|CDD\|225949
NZ_CP050122.1\|WP_010884004.1\|96794_98531_+\|SgrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226909
NZ_CP050122.1\|WP_155896399.1\|95243_95411_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050122.1\|WP_027480379.1\|83943_84942_+\|dihydroxyacetone-kinase-subunit-DhaK	unknown	unknown	gnl\|CDD\|237724
NZ_CP050122.1\|WP_010884019.1\|80083_81067_-\|IS4-family-transposase	unknown	unknown	gnl\|CDD\|376573
NZ_CP050122.1\|WP_010884048.1\|90426_90885_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050122.1\|WP_010884043.1\|108183_109140_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050122.1\|WP_010884044.1\|104695_106771_-\|DUF11-domain-containing-protein	unknown	unknown	unknown
NZ_CP050122.1\|WP_063653100.1\|95483_96740_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340887
NZ_CP050122.1\|WP_010884006.1\|93474_95025_-\|sensor-domain-containing-diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NZ_CP050122.1\|WP_010884007.1\|85531_85933_+\|PTS-dependent-dihydroxyacetone-kinase-phosphotransferase-subunit-DhaM	unknown	unknown	gnl\|CDD\|225946
NZ_CP050122.1\|WP_081816081.1\|84896_85535_+\|dihydroxyacetone-kinase-subunit-L	unknown	unknown	gnl\|CDD\|274099
NZ_CP050122.1\|WP_010884003.1\|109299_109959_+\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_CP050122.1\|WP_162177804.1\|109980_111615_-\|NAD(P)-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|224983
NZ_CP050122.1\|WP_010884017.1\|89782_90430_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224059
NZ_CP050122.1\|WP_010884051.1\|82953_83484_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050122.1\|WP_027480382.1\|91304_93071_-\|alkaline-phosphatase	unknown	unknown	gnl\|CDD\|224699

Protein	Function_ID	Function_description	E-value
NZ_CP050122.1\|WP_010884049.1\|88577_89786_-\|ABC-transporter-permease	gnl\|CDD\|223650	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms].	5.61897e-14
NZ_CP050122.1\|WP_149358002.1\|81594_82110_-\|transposase	gnl\|CDD\|225949	COG3415, COG3415, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.58205e-26
NZ_CP050122.1\|WP_010884004.1\|96794_98531_+\|SgrR-family-transcriptional-regulator	gnl\|CDD\|226909	COG4533, COG4533, ABC-type uncharacterized transport system, periplasmic component [General function prediction only].	0
NZ_CP050122.1\|WP_027480379.1\|83943_84942_+\|dihydroxyacetone-kinase-subunit-DhaK	gnl\|CDD\|237724	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional.	0
NZ_CP050122.1\|WP_010884019.1\|80083_81067_-\|IS4-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	1.15912e-13
NZ_CP050122.1\|WP_063653100.1\|95483_96740_-\|MFS-transporter	gnl\|CDD\|340887	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MdtH and similar multidrug resistance (MDR) transporters from bacteria and archaea, many of which remain uncharacterized. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtH confers resistance to norfloxacin and enoxacin. MdtH-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.18972e-77
NZ_CP050122.1\|WP_010884006.1\|93474_95025_-\|sensor-domain-containing-diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.54873e-33
NZ_CP050122.1\|WP_010884007.1\|85531_85933_+\|PTS-dependent-dihydroxyacetone-kinase-phosphotransferase-subunit-DhaM	gnl\|CDD\|225946	COG3412, COG3412, Uncharacterized protein conserved in bacteria [Function unknown].	2.14118e-46
NZ_CP050122.1\|WP_081816081.1\|84896_85535_+\|dihydroxyacetone-kinase-subunit-L	gnl\|CDD\|274099	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form (EC 2.7.1.-) with a phosphoprotein donor related to PTS transport proteins. This family represents the subunit homologous to the E. coli YcgS subunit.	1.40088e-73
NZ_CP050122.1\|WP_010884003.1\|109299_109959_+\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.81915e-43
NZ_CP050122.1\|WP_162177804.1\|109980_111615_-\|NAD(P)-binding-domain-containing-protein	gnl\|CDD\|224983	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism].	1.15472e-148
NZ_CP050122.1\|WP_010884017.1\|89782_90430_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224059	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	9.21638e-73
NZ_CP050122.1\|WP_027480382.1\|91304_93071_-\|alkaline-phosphatase	gnl\|CDD\|224699	COG1785, PhoA, Alkaline phosphatase [Inorganic ion transport and metabolism].	1.2414e-164

>NZ_CP050122.1|WP_010884048.1|90426_90885_-|hypothetical-protein
MNRRTVLKLLGAAPGALWLAPFGRAGAQSAAASLNFNELYGKVTVRGAEYSSKIKALNGRKVTMSGYMAPPLKPKLDFFVLTRQPMSTCPFCTTAADWPADIVLVIMPPGQELEPSVRGLNVTGRLEIGVKRDDETGFVSLVRLYAERVRDA
>NZ_CP050122.1|WP_010884017.1|89782_90430_-|ABC-transporter-ATP-binding-protein
MSRQLSGRNLSIQHGAEVRLTYPDFSWPAGTHLALTGPSGTGKTSLLNAVAGLLRPSTGQLCYGEHDLTALSEAGRDAFRRREVGYVFQDFHLMPGLSAQENVELGLRVAGVRNAGALAQTALRRLDLAGRLQSKPWQLSTGERQRVAIARAVAHRPGLLLVDEPTAHLDRERAAGAMSLLREVATELGATLVVVTHDEAVALSLPEHFRIRGAS
>NZ_CP050122.1|WP_010884049.1|88577_89786_-|ABC-transporter-permease
MRLAWWTALKTLRHRLGALIITVLAVALATATALVVPLVSRQVERGAQDAAQVFDLLVTAKGSGTQAVMSSLFYLDVPIGNVPHSVYQKLLSAPGTRRAVPIALGDNYAGFPVVGTSAQFFDQRLKPAAPPYFRVAQGNIFARVHDAVVGAAAARQSGLKVGSTFRSAHGLGGADTEGGAAPSTHDEPYTVTGILAPTGGPVDRAVLTPIETLWEAHGEAAASKRDVTAVLYSAENLAGIYTTAGQINAGKDAMAVFPGQVFAQARQTLMQGQAAYAGLSVLVLAIAALTVTLSVYTSGLERRRTVALLRALGAGRGTVFALVLLETGLTVTLGALLGIGLSLLVSRVGGNVLGQRLGFTLAAPELTWPLASRALGLIPLGILAALPPALQALRVSPLRHLH
>NZ_CP050122.1|WP_162177805.1|86223_88224_-|hypothetical-protein
MQRLLSTVLVLSLAVGASAQQSNGQVSFTAPKGWAASSSQGGVLQYTHTSAGGVDGALLIGQDMPLPNDPVRWLEQTARSLAGGQALSEQAVQSEQLASGLTALYKVLIGGTPQQPVAYVAALLHNGTSGVLVVFLSSDVENKNALEKDVDAVVESIRLSGKPTQTAGTTAAAGAGAKPAEPNLPTVNPMNAAQFKAAGGNPARQIIPDEFRCYVKRKGDGLSPDLTVQVLPGGTYRTVYGNGTYQINKDRKITWQGGPLNKADGSLDFDDYGQAFSLSDVSEDTQDTSLNFECYQRGPRENVALHNFKLRTPKPGSYSCVLADGQGDRGALEVGADNTYRFGGAAGRYRVDYRSDQDSARSSLTLRGEGDLEESGFYSEDETGLRVFTLTVPTGGDLISRSSTAWTCTAVAKPTPAPSLYGSEKAPAPPQGSGGLNGNFVHNRAGKLVPVLQIGPDFTSSMVLGSECPGNVCWAFAFFNPNGYVYTQEPKVDASEADCTRTYPNGLPRCEVYRVTGNTIQIGDRAPVPFTLTGSGLNLDGQRYDKLQPMDTLILRGSYESLEVTPNLYLGGSTSSLALTFGEGRTFSLSSDRSTTVMVPGATVSNSNRAATLTGTYKFSGNTVELTYRDGRVVRQFAALPVEGGKITPTLLRIGGVTYSPSIDKK
>NZ_CP050122.1|WP_010884007.1|85531_85933_+|PTS-dependent-dihydroxyacetone-kinase-phosphotransferase-subunit-DhaM
MSVTLVIVSHSAKLAEGVAEFVGQMNAGQVELEAVGGTDDGLLGTSATRIHAALERATQAGGEALVLMDLGSARLRSELALDLLREEQRVRVALAEAPLVEGAFLAAFEAATGGDLRTVQAAAEEGGALKKMG
>NZ_CP050122.1|WP_081816081.1|84896_85535_+|dihydroxyacetone-kinase-subunit-L
MGRASGHACAAVGRVNSEQTRQFLELYARKIQAADQHLTELDSAIGDADHGSNMERGMTAVVGTLPASGTPSDLLRSAAMTLISKVGGASGPLYGTALLRAATSMAGKDEWTQDDLQEALEAAYQGLLERGKAQPGDKTMLDVWRPALDALPGGVGAAAQAASSAAEATRDLTARKGRASYLGERSAGHVDPGSVSSALLFEALAEALEQRP
>NZ_CP050122.1|WP_027480379.1|83943_84942_+|dihydroxyacetone-kinase-subunit-DhaK
MKKIMNATADLVRESCEGFAAAHADLVKPQSDPLFLYRTGDLRGRVALISGGGSGHEPLHAGYIGRGMLTAACPGEVFTSPVPDQMLAAIRHTHGGQGALLIVKNYTGDVMNFELAAELAAAEGIEVASVVIGDDVAVQDSTWTAGRRGVGGTVLLEKIAGAAAEAGAELAEVKQVAQIVMDGVRSMGLALTGATVPAAGKPNFTLADDEIELGIGIHGEPGRERQQLRPADELVDALLDPVTADLDLKRGEEVIALTNGMGGTPLLELYVAHGHVVNHLADRGVKVVRHLVGNYVTSLEMQGLSVTLLRASSEQLRLWDAPVVTPALRWGA
>NZ_CP050122.1|WP_010884051.1|82953_83484_-|hypothetical-protein
MNPNLRTGALILASAFAPVVAGGAGQTAPTFAKSAFCQKYQCKLLSTETVAPGLTEQRYFLNAVVSNDPRTVVSTFMRGGQVVGAQYVTGTQDAFFAWNLGKPEPEMFAELVKTVTGKRPTPQFFEGIEDQCSRVYGTEKSAQIPGTTSRLSCVVSQEFSSAHGSGAARLSLRVHR
>NZ_CP050122.1|WP_149358002.1|81594_82110_-|transposase
MPQVWQPNRLTRQQLEERRLAAQPLLNNPEWTTASIAEHFGVKPSTVRVWRVRLSERGSLEATLSSGRPAWLNDAQVAEIIELLQQGPDPERFPDGRWTTERVRDVIGLKFDVWYDHDWIGKLLRRWGFSWQKAEKHAIEQNPEKIDAWLEEELPALEKKGRSWRNDRLGR
>NZ_CP050122.1|WP_010884019.1|80083_81067_-|IS4-family-transposase
MIDAPRVNHHDLSAHMPGMSTPQGKKRRADRTFRDEQLDRGFFIALLVVHLPPGKVLLSLDRTNWEHGETPINFLVLGAVVHGFTLPLIWVPLDQSGNSHTYARMWLVLKLLRAWPAKRWLGLVADREFIGAEWFRFLRRQGIKRAIRIRQTDMLDDMKGKEWFEHVQHGHFHEIGEKVFVFGELMRVVATRSPVGDLVIIATDFSARKTWRLYKQRWSIECTFSSFKKRGFDLERTGMTERSRLQRLFGLVTLAWMFCLRLGVWLSQTWPIPVLKHGRRAVSLVRHGAQHLVDALRWKPQQFMAILEVFIQAFCPPGAAESEVVTY
>NZ_CP050122.1|WP_027480382.1|91304_93071_-|alkaline-phosphatase
MRKTLLLLALLSASASAAKLQVYPYDGANFIAGQRFDLRVEAEDVTSFKDAVITLDGQPVTGLVKTTTKPTSVEWTLRNQSLAAGEHVLNVKFSDAGGEVTRSVHWTAQASAPSGLAALFQKPKAKNVILFIADGMGWNTLNAAKMVAYPYNPANGMPTGKLAMETGLSSMATITTSSYDSALADSANTASSIATGQKIQVNALNVYGDNTPDTLDNPRAETITAMLKRSMGKSVGIVSSAFGVDATPAAFAAYTRRRGDYQAIADQYFKGDVKPDVLLIGGSRDFIPSTAPGSRRKDNTDWISESQKMGYQFVSTRTELNAATGNKLFGLFNIDNIPSYLDRVQFKGAETIGDFKDMPYLWDSTQKAVQTLEKNPNGFFLMVEAGMVDKYEHPLDWNRAVWDVLELDKAVAWAKDYAKSHPDTLILVTADHAHSMSVYGGYDATKGPGKREAVGVYEKAGFPTYGDKRDANGFPLSETARTYAVGFAATPDYCETYLGRRVFLDPTVSNGKTGAEAAYVPNPKICDEGAVQRTGNLDPGSSQGVHTADPLPLFVFGAGAENFSGVMDQTEIFFGMARALGLDATKNK
>NZ_CP050122.1|WP_010884006.1|93474_95025_-|sensor-domain-containing-diguanylate-cyclase
MTTAAPQPQDNYARLLALARYEILDTLPEDSFDRLVQLTRHILRTPAAYINFVDQSRQWTKACVGAERDSKPLSESMCAWTILQDAPLVVENARLDRRFSHMQLVTGEASLQMYAGVPLTTPSGHRIGTLCVTDNQCHPLGDEDIQALQDLAALVMTELELRAANQELQRDLQAASCQSEELRRTLAQAKTLEGVSALTDLQLPPEEMMLAAAALLSDAVASDLTSLLLFDGPVLRAQAAHTHSRLSPAQRRYLELAVAALPNLAAGFTWSVRDAAVPVYVNDYAAHPHAQAEMVAGGVTQVAWVPLGTRSGVTSGLMSVRLGDHPVARWRSGDCALLEAAGRTIRSALDRWLLTELASQQARQDVLTGALNRRAFEEDFPVRPAPFSLALLDLDGFKAINDREGHSQGDKVLRVFAETLNVELPGGASLYRVGGDEFVVLLNSDDVPLFDEQLDIALLAARQVVAGSVGVSLGMAHSHEAAGPALVQLADARMYALKERRRAQRDTQHQDATKTL
>NZ_CP050122.1|WP_155896399.1|95243_95411_+|hypothetical-protein
MVENDTISLAELDQAMQSFSNPQSKLLGVVLNKVPRSREGYAHYSYSNAEQPTTI
>NZ_CP050122.1|WP_063653100.1|95483_96740_-|MFS-transporter
MWRQLHPNIKVRIINSFLTRMVGGAIFPFMAVYFAHYLGAGLAGLLLMALVAVQFVAGLYGGGLADAWGRRRTLLAGEVLKLLAFAALLLGNLWTPLPWVTFAALAVINVANGLINPAAEAMLVDVSTPDTRTFMYVVNYWAVNASLLLGTLLGGWLYQDHFAALLAGLLGMSFVTLFLAWRFMSETLGGLRRTAAQVRESVGVRPLLRSYAQVMTDRPYVLFTLGFVLLMTIEFGRQNFIPVHLAQSFPAQVLWGVNLTGIKVMSLVTAINTLLIVVLTLPVSHWVGKRELRPVMALGFLLFAVGFAALYGSLNLWALVAGSVVLSIGELLYVPARQTLLADLIPEEKRGSYLAVNGQVFTLAKWLATLGVPLGAQIGGPWMGVLIVLFGVLAVVLSLRGLRAASPERTPERSAPTF
>NZ_CP050122.1|WP_010884004.1|96794_98531_+|SgrR-family-transcriptional-regulator
MTPFAAGPDWPYLELRAALLARDGEQSSYALTLNDLRGWWSKSDKTVKRTLARLQAEGKVTYTPGRGRGRTSRLSFSRDLRPELLTLTRELARRQAAGELARLSRLPFPKGWVLTPDVQRIFGLSASAGGVDRLRTVVFREYTSLDPLTAFATVEAHLLLQVFDGLTRYDPATQTLEPHLAHHWGCSDDGLTWTFYLRKGVPFHHGRTLDASDVRASLERVQRGAAWLLPELLEVRSDHPYRVSLRLARPDAFLPRRLAATQALIVPRDVPPDPQQLIGTGAFQWQPLEGGVRLSAFDAHFAGRPLIDEVELYQVEPLTEAPTLHLEGAAPQKVAEWQEETGVHFLIWNAGQPAAHSAALRAAVFELHDIRRFWEETRQPWPLLSAQSFYPRRSRDRPARVHSDERARSLLAAAGPQPPLRLWVLDREDAVAEARWLSRRAAGFGLEITVELYDLHDEVTRDTPSDLMMMGEVSGPDEQLSFWTALKQPELFFRKLLPREVLAQVDTELEEYRLAQTFAGREAVIDRVEALLLEGHHVHLTHHRVKQRTVHPLLRDVWPDAYGRISFRRLWVGGPAQD
>NZ_CP050122.1|WP_010884044.1|104695_106771_-|DUF11-domain-containing-protein
MKANMKLLALLCALGSGAAGAASTNTMTLAGTEITNQAQATFTVGGATQTTNSDAVKIVVNAVPSYTITNDGTEASPAYTSTVNVNSNATYSYSVKNTGNTPIQVAVGATVGTGSSAITQVNYSGAATGTVPTTGAATIQTITINPDQTVTLTQTFVTPAAPGTYYVNPTGVSMQYASVAANPDGSALTTATLDQTSNRTDVNNVNKTTVLTNVPLLGSPTLTNTVVPSSPNPLPPTGTTTPGTGTGPVGSGNGPAESTGPAYTGIGSTSGTQPPVVVDASGNQYAYPKADAETVNPDSVTMTTIITNPNPTAATYELVPDLSGLPAGVTVTFTDANGNPLPDTDGNGRPEVTAGPNGGTATYRVVVTYPDTESAAAVAGPIRIPVGVDGNRDGIVDATVTYNVLLSNLKFGNTNGTALGVSDVPVTRTVTQPSVTTAVVFPMDLFNDGAYDGNYALSGSTPIGPVKYYATNPDTDGDGVLSPAELAALPAEIASTGAVPVKTEKTVYAVVTIPAGQAPGDYMVTQTATGSLSGTTKSFNTDKVTVTSPNGSLLIAKRVTTPGTTTPSLNATANPGDAVSYTVTATNNYNTSLYGLVLRDPSSNNLGSFSSSNVFGFIKPSSLRATVSGVSGATVLYRTSNLNTWAAQPTVDANTTWVEVGVDTNNNSQIDSGDVFPPNAVITLTLQGTVK
>NZ_CP050122.1|WP_010884043.1|108183_109140_+|hypothetical-protein
MSSPLAEPPEINALLARVQPALLSSAWWAEWQTAGSGTQRATLLQNLSETIRKSDLALSQQLSELALEEVFQDDEREKHAEQADLVTIQALNTLAWVRANLNDYAYSLEYCDKAFNLATQRGLQDWQCRLLNTRALPRFWLGDEMGARADLQEALELAELRGDVKQLLMCYINIAWLEILSEELESAEHHLNLLAEQLHMTDDAQLRQNHIFYLYENRLHVKLLQAREAERLGRDQAMQDALSAAQTHLDWCLTNTHFCSDKPPFEMVIRAHQAQFFMLSGEPALAVQYGEAAIEFGTHSDTWVSAYAHFCLAEAYSM
>NZ_CP050122.1|WP_010884003.1|109299_109959_+|GGDEF-domain-containing-protein
MQESQTSFKRLSEFAQQRRLLHERLKREDARDVDWQERLRQADILARQDALTGVLNRRGLDEGLSALQQSGEWSATQQAEQIAVGFIDIDHFKSFNDEFSHATGDEVLRCLAALLQQIALSPTPSLLGRYGGEEFVLVASVNEERTAWQLFEDCRELIRDHDWSGIAAQRGVTVSIGFATGVPADLPQLLLKADEHLYQAKREGRNRTLPQPASIHSRA
>NZ_CP050122.1|WP_162177804.1|109980_111615_-|NAD(P)-binding-domain-containing-protein
MAAGVPCEWAEVAGGYHGFHLLKPEAEASRQFNTSFLSALRRALGLPDQNTDALPRVNTTPPTQAAALDVLIIGAGLSGIGAAHHLKTKNPGKTFEILEARQAMGGTWDLFRYPGVRSDSDVFTLGYSFKPWLGRKSIADGGDIRQYIQDAADEGGITPHIRFGHRVKSAEWSSEESLWTVTAEQEDGTPVLRQAKFLFLCSGYYSYDEAHRPEFPGEASFQGQIIHPQFWPEDVDYSGKRVVVIGSGATAVTLVPAMTDKAAHVTMLQRSPSHIAVRPLVDGTAAAFQKWLPAPVAHGVTRWKNVLSSIFYYQIARKAPDLFMRGLLDEAQKHLGERFNPADFTPSYKPWDQRVCAIPDADLFQAIRDGKASVLTETIQTFTPHGIRLTGGQELPADIIVTATGLKMNVLGDIEFALDGRPVDLSQTLIYKGMMLSSLPNFAYAFGYTNSSWTLKAELTADYVCRLLTYMDRHAFRAVSPQADSDLGERPLLDLNSGYVTRSLDVLPKQGSKQPWQVYQNYLLDKYAIQVAPINDGTLRFMRR
>NZ_CP050122.1|WP_010884075.1|112619_112940_+|hypothetical-protein
MTPAQRSPASDPFIAGRLAMRLELLITQIQQRKFSPGTEIRMGAYAYNTLQLLLTHRTSNQLDWQGFYASGLTHSLPKELSGQAPTPTYRLITDKQMQPAGGIIIQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP050122_1	1.1\|91142\|31\|NZ_CP050122\|CRISPRCasFinder	91142-91172	31	NZ_CP050120.1	152604-152634	1	0.968
NZ_CP050122_1	1.1\|91142\|31\|NZ_CP050122\|CRISPRCasFinder	91142-91172	31	NZ_CP050120.1	2553533-2553563	2	0.935

1. spacer 1.1|91142|31|NZ_CP050122|CRISPRCasFinder matches to position: 152604-152634, mismatch: 1, identity: 0.968

cggagcgagaggcaaaagagacgtgctgcgg	CRISPR spacer
cggagcgagaagcaaaagagacgtgctgcgg	Protospacer
**********.********************

2. spacer 1.1|91142|31|NZ_CP050122|CRISPRCasFinder matches to position: 2553533-2553563, mismatch: 2, identity: 0.935

cggagcgagaggcaaaagagacgtgctgcgg	CRISPR spacer
cggagcgagcagcaaaagagacgtgctgcgg	Protospacer
********* .********************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Identity
NZ_CP050122_1	1.1\|91142\|31\|NZ_CP050122\|CRISPRCasFinder	91142-91172	31	NC_000958	Deinococcus radiodurans R1 plasmid MP1, complete sequence	55186-55216	1.0
NZ_CP050122_1	1.1\|91142\|31\|NZ_CP050122\|CRISPRCasFinder	91142-91172	31	NZ_CP050118	Deinococcus radiodurans strain BNK-50 plasmid pMP1, complete sequence	146645-146675	1.0
NZ_CP050122_1	1.1\|91142\|31\|NZ_CP050122\|CRISPRCasFinder	91142-91172	31	NZ_CP050122	Deinococcus radiodurans strain BND-54 plasmid pMP1, complete sequence	91142-91172	1.0
NZ_CP050122_1	1.1\|91142\|31\|NZ_CP050122\|CRISPRCasFinder	91142-91172	31	NZ_CP031502	Deinococcus radiodurans strain R1 dM1 plasmid pMP1, complete sequence	101703-101733	1.0

1. spacer 1.1|91142|31|NZ_CP050122|CRISPRCasFinder matches to NC_000958 (Deinococcus radiodurans R1 plasmid MP1, complete sequence) position: , mismatch: 0, identity: 1.0

cggagcgagaggcaaaagagacgtgctgcgg	CRISPR spacer
cggagcgagaggcaaaagagacgtgctgcgg	Protospacer
*******************************

2. spacer 1.1|91142|31|NZ_CP050122|CRISPRCasFinder matches to NZ_CP050118 (Deinococcus radiodurans strain BNK-50 plasmid pMP1, complete sequence) position: , mismatch: 0, identity: 1.0

cggagcgagaggcaaaagagacgtgctgcgg	CRISPR spacer
cggagcgagaggcaaaagagacgtgctgcgg	Protospacer
*******************************

3. spacer 1.1|91142|31|NZ_CP050122|CRISPRCasFinder matches to NZ_CP050122 (Deinococcus radiodurans strain BND-54 plasmid pMP1, complete sequence) position: , mismatch: 0, identity: 1.0

cggagcgagaggcaaaagagacgtgctgcgg	CRISPR spacer
cggagcgagaggcaaaagagacgtgctgcgg	Protospacer
*******************************

4. spacer 1.1|91142|31|NZ_CP050122|CRISPRCasFinder matches to NZ_CP031502 (Deinococcus radiodurans strain R1 dM1 plasmid pMP1, complete sequence) position: , mismatch: 0, identity: 1.0

cggagcgagaggcaaaagagacgtgctgcgg	CRISPR spacer
cggagcgagaggcaaaagagacgtgctgcgg	Protospacer
*******************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

7861 : 82110

Bacillus_phage(38.89%)

transposase,integrase

attL 8981:9018|attR 82271:82308

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010884022.1\|7861_8845_-\|transposase	IS4 family transposase	NA	NA	NA	NA
8981:9018	attL	NA	NA	NA	NA
WP_010884035.1\|9209_9923_+	DUF2259 domain-containing protein	NA	NA	NA	NA
WP_063653102.1\|10330_11515_-\|transposase	IS4-like element ISDra7 family transposase	NA	NA	NA	NA
WP_027480400.1\|13013_13580_-	DUF3592 domain-containing protein	NA	NA	NA	NA
WP_162177815.1\|13793_16103_-	glycerophosphodiester phosphodiesterase	A0A2P1N091	Streptomyces_phage	3.2e-07	36.0
WP_010884021.1\|16161_16425_-	thioredoxin	NA	NA	NA	NA
WP_027480401.1\|16417_17413_-	ribonucleotide-diphosphate reductase subunit beta	A0A142F1R6	Bacillus_phage	7.3e-86	50.8
WP_027480402.1\|17469_19557_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	R4JDX9	Bacillus_phage	1.1e-189	47.8
WP_010883964.1\|19541_19967_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	S5MA49	Bacillus_phage	5.1e-12	33.3
WP_162177816.1\|20123_20606_-	acyl-CoA thioesterase	NA	NA	NA	NA
WP_010883962.1\|21039_22074_-\|integrase	tyrosine-type recombinase/integrase	W8EHC2	Mycobacterium_phage	1.3e-08	33.3
WP_063653103.1\|22231_23407_-\|transposase	IS4-like element ISDra7 family transposase	NA	NA	NA	NA
WP_010884020.1\|23632_24616_+\|transposase	IS4-like element ISDra1 family transposase	NA	NA	NA	NA
WP_081816080.1\|25039_25921_+	hypothetical protein	A0A1V0SK86	Klosneuvirus	6.6e-30	27.6
WP_010884034.1\|26113_26746_+	RNA ligase family protein	A0A248SJ81	Salicola_phage	5.5e-55	49.0
WP_010884064.1\|26742_27600_+	TIGR02452 family protein	G3MBH6	Bacillus_virus	7.6e-39	38.4
WP_010884033.1\|27575_28817_+	AAA family ATPase	D5GVP0	Campylobacter_virus	7.2e-06	31.4
WP_034351235.1\|28900_29689_-	alpha/beta fold hydrolase	A0A218MNI3	uncultured_virus	4.9e-61	40.8
WP_010884031.1\|29858_30197_+	hypothetical protein	NA	NA	NA	NA
WP_165439381.1\|30236_30629_-	hypothetical protein	NA	NA	NA	NA
WP_162150140.1\|32282_33314_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.2e-14	34.0
WP_010883959.1\|33496_34222_-	DNA starvation/stationary phase protection protein	A0A0A7RTZ1	Clostridium_phage	1.4e-06	24.6
WP_010883958.1\|34421_35081_+	response regulator transcription factor	W8CYM9	Bacillus_phage	2.8e-25	33.0
WP_010883957.1\|35077_36433_+	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	4.0e-10	23.0
WP_010884029.1\|36586_38002_-	hypothetical protein	NA	NA	NA	NA
WP_010883956.1\|38348_39446_-	sensor histidine kinase KdpD	NA	NA	NA	NA
WP_051618915.1\|39451_40042_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA
WP_010883954.1\|40234_41941_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA
WP_010884066.1\|41943_42159_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA
WP_034351346.1\|44714_46262_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_166466121.1\|46254_46884_+	response regulator transcription factor	NA	NA	NA	NA
WP_162177797.1\|46918_47671_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_010883950.1\|47906_49094_+	o-succinylbenzoate synthase	NA	NA	NA	NA
WP_027480350.1\|49112_49883_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010884014.1\|50705_51524_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	2.5e-15	30.4
WP_027480352.1\|51783_54264_+	phosphoenolpyruvate--protein phosphotransferase	A0A2D2W2B1	Stenotrophomonas_phage	3.2e-05	40.5
WP_010884013.1\|54265_55213_+	1-phosphofructokinase	NA	NA	NA	NA
WP_010884012.1\|55351_57148_+	PTS fructose-like transporter subunit IIB	NA	NA	NA	NA
WP_162177800.1\|57162_57537_+	FAD-dependent monooxygenase	NA	NA	NA	NA
WP_010884060.1\|57627_57879_+	PqqD family protein	NA	NA	NA	NA
WP_010884063.1\|57875_58739_+	hypothetical protein	NA	NA	NA	NA
WP_010884010.1\|58774_61009_-	S8 family serine peptidase	A0A217EQY2	Bacillus_phage	4.9e-21	29.7
WP_010884059.1\|61026_63687_-	hypothetical protein	NA	NA	NA	NA
WP_010884009.1\|64399_67603_-	ExeM/NucH family extracellular endonuclease	NA	NA	NA	NA
WP_166466122.1\|67592_67757_-	hypothetical protein	NA	NA	NA	NA
WP_162177798.1\|69288_72675_+	DUF3616 domain-containing protein	NA	NA	NA	NA
WP_010884056.1\|73023_73350_+	hypothetical protein	NA	NA	NA	NA
WP_166466123.1\|73354_76252_-	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_027480358.1\|76293_76620_-	hypothetical protein	NA	NA	NA	NA
WP_027480359.1\|76824_77301_-	hypothetical protein	NA	NA	NA	NA
WP_063653036.1\|77439_78672_-\|transposase	transposase	A0A218MNH3	uncultured_virus	1.7e-36	28.1
WP_010884019.1\|80083_81067_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_149358002.1\|81594_82110_-\|transposase	transposase	NA	NA	NA	NA
82271:82308	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP050120

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP050122

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection