CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP050144	Komagataeibacter rhaeticus strain ENS 9a1a plasmid pENS5, complete sequence	0 crisprs	NA	0	0
NZ_CP050139	Komagataeibacter rhaeticus strain ENS 9a1a chromosome, complete genome	1 crisprs	csa3,DEDDh,WYL	1	2
NZ_CP050141	Komagataeibacter rhaeticus strain ENS 9a1a plasmid pENS2, complete sequence	0 crisprs	NA	0	0
NZ_CP050140	Komagataeibacter rhaeticus strain ENS 9a1a plasmid pENS1, complete sequence	1 crisprs	NA	1	0
NZ_CP050143	Komagataeibacter rhaeticus strain ENS 9a1a plasmid pENS4, complete sequence	0 crisprs	NA	0	0
NZ_CP050142	Komagataeibacter rhaeticus strain ENS 9a1a plasmid pENS3, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP050139_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP050139_1

3283014-3283107

Orphan

Consensus_repeat	Method
TCAGTTCTCAGTGAAAATCAACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP050139_1

>merge|NZ_CP050139|1|3283014-3283107|CRISPRCasFinder
TCAGTTCTCAGTGAAAATCAACAGTCAACTCTTCAGCATCCTCCCAGGACCACTGCGAGCCGTCCACACCATCAGTTCTCAGTGAAAATCAACA

>NZ_CP050139|1|1|3283014-3283107|CRISPRCasFinder
TCAGTTCTCAGTGAAAATCAACA	GTCAACTCTTCAGCATCCTCCCAGGACCACTGCGAGCCGTCCACACCA
TCAGTTCTCAGTGAAAATCAACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP050139.1\|WP_112210235.1\|3280992_3281823_-\|FAD-binding-oxidoreductase	unknown	unknown	unknown
NZ_CP050139.1\|WP_112210239.1\|3284248_3285553_-\|DUF1173-family-protein	unknown	unknown	gnl\|CDD\|369028
NZ_CP050139.1\|WP_112210260.1\|3281826_3282363_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050139.1\|WP_112210243.1\|3287895_3288501_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050139.1\|WP_102325775.1\|3278499_3278802_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050139.1\|WP_039998253.1\|3290159_3290582_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050139.1\|WP_007396655.1\|3284026_3284206_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050139.1\|WP_112210230.1\|3279154_3279562_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050139.1\|WP_007396178.1\|3289653_3290163_-\|lytic-transglycosylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|381603
NZ_CP050139.1\|WP_053324074.1\|3275189_3275684_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NZ_CP050139.1\|WP_078524628.1\|3280498_3280993_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050139.1\|WP_112210228.1\|3276788_3277223_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|369571
NZ_CP050139.1\|WP_010511735.1\|3277748_3278429_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050139.1\|WP_082267062.1\|3283116_3283392_+\|MucR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|227293
NZ_CP050139.1\|WP_112210232.1\|3279575_3280388_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050139.1\|WP_081749555.1\|3283415_3284021_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050139.1\|WP_112210244.1\|3288511_3289657_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050139.1\|WP_112210241.1\|3285549_3287892_-\|TraM-recognition-domain-containing-protein	unknown	unknown	gnl\|CDD\|274760
NZ_CP050139.1\|WP_112210226.1\|3275703_3276723_+\|zinc-binding-alcohol-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|176214
NZ_CP050139.1\|WP_010511855.1\|3290578_3290827_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP050139.1\|WP_082267062.1\|3283116_3283392_+\|MucR-family-transcriptional-regulator	gnl\|CDD\|227293	COG4957, COG4957, Predicted transcriptional regulator [Transcription].	2.43336e-18
NZ_CP050139.1\|WP_112210239.1\|3284248_3285553_-\|DUF1173-family-protein	gnl\|CDD\|369028	pfam06666, DUF1173, Protein of unknown function (DUF1173). This family contains a group of hypothetical bacterial proteins that contain three conserved cysteine residues towards the N-terminal. The function of these proteins is unknown.	2.48918e-53
NZ_CP050139.1\|WP_112210241.1\|3285549_3287892_-\|TraM-recognition-domain-containing-protein	gnl\|CDD\|274760	TIGR03743, SXT_TraD, conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains. [Mobile and extrachromosomal element functions, Other].	3.67834e-07
NZ_CP050139.1\|WP_053324074.1\|3275189_3275684_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	3.95142e-49
NZ_CP050139.1\|WP_112210226.1\|3275703_3276723_+\|zinc-binding-alcohol-dehydrogenase-family-protein	gnl\|CDD\|176214	cd08252, AL_MDR, Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	0
NZ_CP050139.1\|WP_007396178.1\|3289653_3290163_-\|lytic-transglycosylase-domain-containing-protein	gnl\|CDD\|381603	cd13400, LT_IagB-like, Escherichia coli invasion protein IagB and similar proteins. Lytic transglycosylase-like protein, similar to Escherichia coli invasion protein IagB. IagB is encoded within a pathogenicity island in Salmonella enterica and has been shown to degrade polymeric peptidoglycan. IagB-like invasion proteins are implicated in the invasion of eukaryotic host cells by bacteria. Lytic transglycosylase (LT) catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Members of this family resemble the soluble and insoluble membrane-bound LTs in bacteria and the LTs in bacteriophage lambda.	3.72914e-34
NZ_CP050139.1\|WP_112210228.1\|3276788_3277223_+\|cupin-domain-containing-protein	gnl\|CDD\|369571	pfam07883, Cupin_2, Cupin domain. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel).	1.11148e-08

>NZ_CP050139.1|WP_112210260.1|3281826_3282363_-|hypothetical-protein
MTTQAATRSVLLWLTEHHDAVAAIRPPGGSWKPVIAVMRESGLDISADHSGLRKVRKLWVQVRNARKGHAEEQTASVEVDPPVHTTHPSRLPQDWKPDLVDDGQRNLSHFPDAAAVPAPRVSAEKNAQVASLPATVPGCSGSETTREKNFPIGRARAEAIKRDLLARLKRKEPGFHRE
>NZ_CP050139.1|WP_112210235.1|3280992_3281823_-|FAD-binding-oxidoreductase
MASATITDAADPTDLVTRPTLLVAIGRQRVGKTTFLKSLAEITAQQGGRPEIWNTDSMNRSHTLSSLGPQVLEADSMSPTGQAAWLEGQIEKLVESRHDAILDIGGGWTAMHELIRSSPLVAALDELGVSLVTIFMIGMENADIDYLQDLQEQHGFLPPRTAIVINEGLLPVGIDTPQAVSQILENEAVLNALDRGAAHGVFPAINGLKKIADRGQSFMDFAANKPVPGQPKSSVFDRLRVNRWLKRDVPLFLRDLGADYLPRMPKGLPDVVMENV
>NZ_CP050139.1|WP_078524628.1|3280498_3280993_-|hypothetical-protein
MAAQGDIEAADREFAIRMENLRRVAAQWVERPIAPEVEVLSALVAAIDQIGTLCIEARRASIRSVAESRLVAEQQRETLAQDTIAIRSHLRDGIEAVHTLRTINEKLVEKKLLAITADMTKGLRGAIESQATAMTRRYNLQTAFRILGYSSIVLIAGFALGRMP
>NZ_CP050139.1|WP_112210232.1|3279575_3280388_-|hypothetical-protein
MIRLPFPCRRTTQATVILVTCGLVAPPIGHAQTVNVPGGLPTHVNATYQEPGLGGWTPDTTGTAQATSGSGAVTQTTTAGTSDSDALETLYQQSWGYAAAQNAEALGVNPSALAATCVVESGCQNLYTAGNGSTITGAFQMSNGTYSQTLGEALAADPSLASSITSGTAGQQDPATQAVAAAQYLKDAATSLQQSGISNPTALDARAYYNFGPSAGAEIATADDSSLMSSYISSTAMSGNNISSTTTVGQWRAAVAAKMGSAASSSILTG
>NZ_CP050139.1|WP_112210230.1|3279154_3279562_-|hypothetical-protein
MRFSHRAAILAALTCSISHPAFALHRTPVRALDGYRCMALDAPARVMMDFRHPIPLQSEPRDGAPSIAPALAVLPIATDAPPTNGYVRSMNLALRPGWVSTRWLKPYDAVHPGMTCTPYVMNDGKLGFVFGRATQ
>NZ_CP050139.1|WP_102325775.1|3278499_3278802_+|hypothetical-protein
MSEYESMADRDEALALSRAAPHHAWVLTDRDVWHRNPFYHGPEMPHPEDDGAHDFIADHGIDAWREATTAARAAAIAAAEAKAREIADAPDPWWPDDPTP
>NZ_CP050139.1|WP_010511735.1|3277748_3278429_+|hypothetical-protein
MSNATNTMTAALASAQEKKAASKAKSGQKAPAARRFEEAARRAPVITIEAAEALIPVPDQITKIVSHFGLEDFDADALAETARQAFTVIARSLSPVLVVTTWNGEQNDKGLEMHLQRMAGAAVASAFGAAQFYDAKRAQARELSSQFNEYREEDRMGVDGLENRAANARRFAAEQGIKAAALVASARGALAAYEDMIGTPWKPYTASNARTIDQRAAAAEMDALGF
>NZ_CP050139.1|WP_112210228.1|3276788_3277223_+|cupin-domain-containing-protein
MTDEEHLMTLNRTGGRFDLNRIVAAFPQTADTMLLDTYLTDRPEASIRVFRIYRDVPPHYHTQCDEVLHVLSGEGTFWIDDPAEEAPFVPGHLLVFPRRAVHAVPRILRDPVIFLAIDTPRRAPDDVVFVDPAKGTPSGFIKSI
>NZ_CP050139.1|WP_112210226.1|3275703_3276723_+|zinc-binding-alcohol-dehydrogenase-family-protein
MRAVGYQTPFPIDNPASLQDIDLPKPVPSGRDLLVEIRAVSVNPVDTKVRRSATPDAGQWRVLGWDAAGIVVGTGPEVTDFAIGDEVFYAGALDRPGTDAEFHLVDERIVGRKPRSLNWAEAAALPLTAITAWEMLFDRLDIRRPVPGVKPAVLIIGGAGGVSSIAIQLARVLTDVTVIATASRPETRDWVTSLGADHVVDHSRPLAAQVAALPTGAPGFVFSTTQTDRHMPEIVALIAPQGHFGLIDDPAALDALPLKKKSLSLHWELMFTRPLFGTADMGRQGEILNKVSRLVDDGRIRTTLGRNLGLITAANLRQAHALIESGQAKGKIVLEGFPG
>NZ_CP050139.1|WP_053324074.1|3275189_3275684_-|helix-turn-helix-transcriptional-regulator
MKENSEHYAGFGQERTFNAHSIGNDTVMARIRHKSLDCSPGCAVEATLQLIDGKWKGVILYHLLEGTLRFNEIRRRLPNITQRMLTAQLRELEQDGFVLRTVYAEVPPKVEYSLTPRGRTLEPVIMALKKWGDENTGFRRDPESPAKLDEPAADCPVSCVQAGG
>NZ_CP050139.1|WP_082267062.1|3283116_3283392_+|MucR-family-transcriptional-regulator
MTLEEYRRKWGLPSHYPMVAPNYTVRRSELAREIGLGRDITSAATEFDDMGNGTGIAREVAGEASGQKEGHPPKAERAVRRGGVAVLLIQS
>NZ_CP050139.1|WP_081749555.1|3283415_3284021_-|hypothetical-protein
MTALHTSFVLGYHGCSEEVGRKLINGESAPTPSETDYDWLGPGFYVWESDPLRAQEWAYQKQRRDSGFKPFVIGLVVDLGNCLDLTTREDLEMLKTAYEGLRETLSTDDIPMPVNRDSRHDVNSDKLFRNLDCAVIRYLHDSIEAPESHLAPYDTVRGLFQEGGELYPGSAFREKTHTQIAIRNLDCIKGIFRLPDSSVGI
>NZ_CP050139.1|WP_007396655.1|3284026_3284206_-|hypothetical-protein
MKLNSHQVALAAIRKQTLANTKSKRTAHAALLRMGIIDSKGAVTKEYTRDPRIEGMLKA
>NZ_CP050139.1|WP_112210239.1|3284248_3285553_-|DUF1173-family-protein
MTGTIIILPGGERFQLEWRRTDPERWGRRLKAKYDESWSAERSDKARCLCQHRGASLPLQIRYRADSHSYHLAVWPNEGPLHEKTCPFYKPDPEKSGRASYVNSVIREGEDGDVAVTLSIGLRRKGPPRPVDDTPLPASDRPGQARQRRMTPLGLLHLLWERAGLTEWRPQFARHRTPTAALGRIASAGTRIRAQGRLISDLLCPVAPGHEKFGRRFHAIVRTEGKENHLFLIGFVEALEPDPRGNFTMTLSGQRNGYRCFLTVPAAERNRLARSHQLAAATLALPEAARQAHVVALLYVTARNIGTHNSRWRGWIQAEVRTGALMTVSRSMLPFESSHELAVADALVAAGRAFEKPLRFDAERDLVFPDFILQDTARSDGYPMEVFGRTDEAYTTRRAEKENYYDATFGAGGWWSWDATTGSRMPPFPSGRLR
>NZ_CP050139.1|WP_112210241.1|3285549_3287892_-|TraM-recognition-domain-containing-protein
MVKREIGGPQVHQQLKHGSTYRDTRPFTVRIAEELQSSSSGFALMILAGLSVLAPAIVGIIFPLALCLTLWVMTRQPVLPFHLPRYSGLKDKHDLDPKTRRPRAAAGIIYLGTDGLTGQQLWLSSDAGRQHAAVPGTTGAGKTTSAISLLANPLAHGSGFILIDGKGDNTVHGDVLALARRFGLDDQVLNLNFLTASGIRQSNTFNPFATGNADAIREMLVSQLGEPSSNDANGVFRDRAVGLAGTIAPVLTWMRDTHGVPINIETMRYAMELRWIGTLARHRVFLIRNPGSDHPIEISVPEIPDDILYPAQAYLGELPGYDSSLAWNEQKENKPSEQHGYAKMYFTRVFTQLGVSLGHIFRAQIPDIDMRDVVLNRRILVVTLPALENSSDTLAGLGKIVVAAGRGVMAQLLGARLDGPAEQVFKLKAGSGDAPFHFFYDELSAYVTDGMDRQLAMGRGLNCMFWLGFQDLPGLTTRIGDKAFTLLGNANLTHAMRLQDAMRTREWIEKQSDRIEVSQATHFEGNSAGSYREGRGAEVREVARIPWADLQSLIEGEAITMYAGRIVHSKTFFAAVNGRSGAIRMAQPVMLAAPLDLNRVPPDQQLLALLATIEGGLFQSELTTVHDEPDVRALEEAVDRLGSGSQDILRNFAQIGAAVAAAPRRVATANDDEENEHAAGTDMLTPFSYMLRDAASIPKPGFRTPPRTIPPIDGHLLGRLEAIERRVDRQPGVARRQALLLLGVRDAMTKGAPKEGAASTGMTEKEILAQIRILREKTSA
>NZ_CP050139.1|WP_112210243.1|3287895_3288501_-|hypothetical-protein
MTRIILHADGRAPITIELDGTGLQPLHFHLGSDFGHTETNDAAATLPEAAAARRWRLKKALPALIAGGLAAILIIGTRQAMVSDRAVPDTGPTGMLRPPAILPPLSGAPMTDEGAPGVRSTYVPGARMPVDGNVVGNPDGHPASAEIDAARRIMAQRPVITYPQPPGSAQTAPTAPVSPTAPTAPVAPTIDTGKSPFGLED
>NZ_CP050139.1|WP_112210244.1|3288511_3289657_-|hypothetical-protein
MSTNRVPWSSSDDYLLFSSIIIIVGVLLFSYMAWSLWHTQITAVYLWAMLGQINLLHTSNPDLMRLQVQLQAAQYRPDLVRAIQLYYGLAILGNALKWPVAIVIALLGGLCMWRAAPGRFAKALDLEGLIAVQAEMFPTLKGFVRRRLDRLVTPTDGIPLPADPALTRAEWGARFAVDAQGRYSETGALEAFTRQLGRHWSSINAASPVEQVLLVAFAMHYLQRRREALALLGELSAGLADAGLDGPHGPLAPLTVPESVMRSARSALQDKEITNCIDTVCERSGWSVTALMTLLHEARRQAGVLAPSSFAIVKLIDRSLWYALHSLGFPAEIPAEDLHPNPRIEAAGARAHWSEERRYQRPIYIPAVENALAILRPMPEA
>NZ_CP050139.1|WP_007396178.1|3289653_3290163_-|lytic-transglycosylase-domain-containing-protein
MILRLALAALGAFPLFVASTTARATSIEENGRQIAACLEASAKISGVPRGVLLVLLYVEAGRPGMVSPNGNGTADLGPMQVNTTWVDRIARRWHSTPAQTYAALRDSSCANIEAGAWILGQAMHEAHGDLWQAVAFYHSHTPRHGNAYLRRFYDIALTMMARNRRDDRS
>NZ_CP050139.1|WP_039998253.1|3290159_3290582_-|hypothetical-protein
MSAIDLAAISAAQTRLLAEIGKPIELLDRGTGKRVVVSPADAAHPEAYLPVFLISAEALWLELTGTGFALDVSRTPDSALGYAVRKVRAGSFTVVMLCLIDVTMRLAEMDDALVLNHLIDFWGEAHGRIADVAPTLQGAT
>NZ_CP050139.1|WP_010511855.1|3290578_3290827_-|hypothetical-protein
MWRATAYPVRVFILDARSCFPILISVTHWSLTTLLIGVFGVVFFGTISFFGLTLPAAIRSMRRFLIGPVRTALPTWQRRRFS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP050139_1	1.1\|3283037\|48\|NZ_CP050139\|CRISPRCasFinder	3283037-3283084	48	NZ_CP021468	Komagataeibacter europaeus strain SRCM101446 plasmid pKE1446-1	128051-128098	0	1.0
NZ_CP050139_1	1.1\|3283037\|48\|NZ_CP050139\|CRISPRCasFinder	3283037-3283084	48	NZ_CP050140	Komagataeibacter rhaeticus strain ENS 9a1a plasmid pENS1, complete sequence	98-145	0	1.0
NZ_CP050139_1	1.1\|3283037\|48\|NZ_CP050139\|CRISPRCasFinder	3283037-3283084	48	NC_016037	Komagataeibacter medellinensis NBRC 3288 plasmid pGXY010, complete sequence	52080-52127	1	0.979
NZ_CP050139_1	1.1\|3283037\|48\|NZ_CP050139\|CRISPRCasFinder	3283037-3283084	48	NZ_CP004365	Komagataeibacter xylinus E25 plasmid pGX5, complete sequence	208514-208561	2	0.958

1. spacer 1.1|3283037|48|NZ_CP050139|CRISPRCasFinder matches to NZ_CP021468 (Komagataeibacter europaeus strain SRCM101446 plasmid pKE1446-1) position: , mismatch: 0, identity: 1.0

gtcaactcttcagcatcctcccaggaccactgcgagccgtccacacca	CRISPR spacer
gtcaactcttcagcatcctcccaggaccactgcgagccgtccacacca	Protospacer
************************************************

2. spacer 1.1|3283037|48|NZ_CP050139|CRISPRCasFinder matches to NZ_CP050140 (Komagataeibacter rhaeticus strain ENS 9a1a plasmid pENS1, complete sequence) position: , mismatch: 0, identity: 1.0

gtcaactcttcagcatcctcccaggaccactgcgagccgtccacacca	CRISPR spacer
gtcaactcttcagcatcctcccaggaccactgcgagccgtccacacca	Protospacer
************************************************

3. spacer 1.1|3283037|48|NZ_CP050139|CRISPRCasFinder matches to NC_016037 (Komagataeibacter medellinensis NBRC 3288 plasmid pGXY010, complete sequence) position: , mismatch: 1, identity: 0.979

gtcaactcttcagcatcctcccaggaccactgcgagccgtccacacca	CRISPR spacer
gtcaactcttcagcatcctctcaggaccactgcgagccgtccacacca	Protospacer
********************.***************************

4. spacer 1.1|3283037|48|NZ_CP050139|CRISPRCasFinder matches to NZ_CP004365 (Komagataeibacter xylinus E25 plasmid pGX5, complete sequence) position: , mismatch: 2, identity: 0.958

gtcaactcttcagcatcctcccaggaccactgcgagccgtccacacca	CRISPR spacer
gtcaactcttcagcatcctctcaggaccactgcgagccgtccacaccg	Protospacer
********************.**************************.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

424887 : 490624

Enterobacteria_phage(40.0%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012813092.1\|424887_425202_-\|transposase	transposase	NA	NA	NA	NA
WP_112209847.1\|426899_427088_-	hypothetical protein	NA	NA	NA	NA
WP_112209845.1\|427168_427726_+	phosphate-starvation-inducible PsiE family protein	NA	NA	NA	NA
WP_112210156.1\|428191_428674_-	Hsp20 family protein	A0A218MMV3	uncultured_virus	1.9e-18	36.1
WP_112209841.1\|428709_428991_-	hypothetical protein	NA	NA	NA	NA
WP_102324447.1\|428989_429253_+	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA
WP_010511782.1\|429773_430022_+	hypothetical protein	NA	NA	NA	NA
WP_010511780.1\|430130_430394_+	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA
WP_006559873.1\|430386_430731_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A2H4JBF4	uncultured_Caudovirales_phage	4.5e-19	48.4
WP_166498090.1\|431005_431428_+	hypothetical protein	NA	NA	NA	NA
WP_166498091.1\|431455_433672_+	EAL domain-containing protein	NA	NA	NA	NA
WP_166498092.1\|433908_434664_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_166498093.1\|435005_435647_+	hypothetical protein	NA	NA	NA	NA
WP_166498094.1\|435676_437413_+	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
WP_166498095.1\|437409_447276_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	NA	NA	NA
WP_083824506.1\|447573_448008_+	hypothetical protein	NA	NA	NA	NA
WP_083824534.1\|449497_449689_-	hypothetical protein	A0A0P0ZBY2	Stx2-converting_phage	1.2e-08	63.8
WP_166498096.1\|452197_453991_-	DNA-binding domain-containing protein	NA	NA	NA	NA
WP_166498097.1\|454246_454618_+	DUF3742 family protein	NA	NA	NA	NA
WP_166498098.1\|454619_456143_-	conjugal transfer protein TraG	NA	NA	NA	NA
WP_166498099.1\|456139_456511_-	hypothetical protein	NA	NA	NA	NA
WP_166498100.1\|456507_457920_-	integrating conjugative element protein	NA	NA	NA	NA
WP_166498101.1\|457931_458882_-	TIGR03756 family integrating conjugative element protein	NA	NA	NA	NA
WP_166498102.1\|458878_459322_-	TIGR03757 family integrating conjugative element protein	NA	NA	NA	NA
WP_166498103.1\|459462_460032_-	hypothetical protein	NA	NA	NA	NA
WP_166498104.1\|460570_460978_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_166498105.1\|460978_461212_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_166498106.1\|461326_462073_-	thioredoxin domain-containing protein	NA	NA	NA	NA
WP_166498107.1\|462082_464959_-	conjugative transfer ATPase	NA	NA	NA	NA
WP_166498108.1\|464958_465399_-	TIGR03751 family conjugal transfer lipoprotein	NA	NA	NA	NA
WP_166498182.1\|465379_466831_-	TIGR03752 family integrating conjugative element protein	NA	NA	NA	NA
WP_166498109.1\|466820_467735_-	TIGR03749 family integrating conjugative element protein	NA	NA	NA	NA
WP_166498110.1\|467731_468424_-	TIGR03746 family integrating conjugative element protein	NA	NA	NA	NA
WP_166498111.1\|468420_468852_-	TIGR03750 family conjugal transfer protein	NA	NA	NA	NA
WP_166498112.1\|468867_469236_-	TIGR03745 family integrating conjugative element membrane protein	NA	NA	NA	NA
WP_166498113.1\|469259_469499_-	TIGR03758 family integrating conjugative element protein	NA	NA	NA	NA
WP_166498114.1\|469495_469861_-	raqprd family integrative conjugative element protein	NA	NA	NA	NA
WP_166498115.1\|470188_470458_-	hypothetical protein	NA	NA	NA	NA
WP_166498116.1\|470481_470880_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_166498117.1\|470876_471134_-	type II toxin-antitoxin system prevent-host-death family antitoxin	NA	NA	NA	NA
WP_166498118.1\|471235_471955_-	hypothetical protein	NA	NA	NA	NA
WP_166498119.1\|472249_472858_+	hypothetical protein	NA	NA	NA	NA
WP_166498120.1\|473016_473517_+	hypothetical protein	NA	NA	NA	NA
WP_003626675.1\|473889_474165_+	formaldehyde-responsive transcriptional repressor FrmR	NA	NA	NA	NA
WP_003618982.1\|475373_475775_+	VOC family protein	NA	NA	NA	NA
WP_166498121.1\|475799_476627_+	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_039906093.1\|477069_478260_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_166498183.1\|478687_480253_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_166498122.1\|480249_481089_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	1.0e-35	34.3
WP_166498123.1\|483453_484233_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	1.8e-34	37.1
WP_007396201.1\|485095_486175_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_083819175.1\|486543_488271_+	hypothetical protein	NA	NA	NA	NA
WP_130732960.1\|488335_488605_+	hypothetical protein	NA	NA	NA	NA
WP_083824464.1\|488792_489761_+	HNH endonuclease	NA	NA	NA	NA
WP_039999222.1\|489814_490624_-\|transposase	IS5 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

3313020 : 3355100

Acinetobacter_phage(22.22%)

integrase,transposase

attL 3300913:3300972|attR 3354360:3354519

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3300913:3300972	attL	NA	NA	NA	NA
WP_039998313.1\|3313020_3314052_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_166498166.1\|3314129_3318872_+	DEAD/DEAH box helicase	A0A1V0SLK7	Klosneuvirus	5.3e-25	24.5
WP_007396369.1\|3319149_3319704_+	hypothetical protein	NA	NA	NA	NA
WP_039998314.1\|3319704_3320319_+	RES family NAD+ phosphorylase	NA	NA	NA	NA
WP_034931780.1\|3320607_3321381_-	aromatic-ring-hydroxylating dioxygenase	A0A1B1IVW1	uncultured_Mediterranean_phage	9.6e-09	27.0
WP_112209798.1\|3321370_3322510_-\|transposase	transposase	NA	NA	NA	NA
WP_081749560.1\|3323905_3324175_-	Txe/YoeB family addiction module toxin	NA	NA	NA	NA
WP_061276673.1\|3324171_3324447_-	type II toxin-antitoxin system prevent-host-death family antitoxin	NA	NA	NA	NA
WP_166498167.1\|3325351_3326293_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.3e-12	26.2
WP_035366892.1\|3326619_3327219_-	DUF488 domain-containing protein	NA	NA	NA	NA
WP_061507197.1\|3327217_3327433_+	DUF2945 domain-containing protein	NA	NA	NA	NA
WP_003631413.1\|3327456_3327636_-	hypothetical protein	NA	NA	NA	NA
WP_025439978.1\|3329073_3330267_-	Fic family protein	D7RWK9	Brochothrix_phage	7.6e-13	22.3
WP_112209709.1\|3330727_3331231_+	MucR family transcriptional regulator	A0A1P8VVG0	Erythrobacter_phage	1.1e-21	46.0
WP_112209721.1\|3331260_3331776_-	hypothetical protein	NA	NA	NA	NA
WP_158551941.1\|3331681_3331999_-	hypothetical protein	NA	NA	NA	NA
WP_112209708.1\|3332348_3332771_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_112209707.1\|3332767_3333025_-	plasmid stabilization protein	NA	NA	NA	NA
WP_112209706.1\|3333207_3333462_-	hypothetical protein	NA	NA	NA	NA
WP_061275760.1\|3333538_3333955_-	type II toxin-antitoxin system HicB family antitoxin	A0A0D4DCG1	Acinetobacter_phage	7.2e-19	38.9
WP_019087453.1\|3333965_3334145_-	type II toxin-antitoxin system HicA family toxin	A0A0D4DC32	Acinetobacter_phage	7.3e-13	59.3
WP_166498168.1\|3334344_3335531_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_112209712.1\|3335877_3336300_-	hypothetical protein	NA	NA	NA	NA
WP_112209711.1\|3337364_3338315_-	replication initiator protein A	NA	NA	NA	NA
WP_083824336.1\|3338311_3338629_-	hypothetical protein	NA	NA	NA	NA
WP_062247395.1\|3338628_3339282_-	ParA family protein	B0ZSI1	Halomonas_phage	4.3e-10	28.4
WP_007396268.1\|3339437_3339857_-	putative toxin-antitoxin system toxin component, PIN family	NA	NA	NA	NA
WP_039998284.1\|3339860_3340115_-	hypothetical protein	NA	NA	NA	NA
WP_112209710.1\|3340203_3340839_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_110096515.1\|3340835_3341132_-	WGR domain-containing protein	NA	NA	NA	NA
WP_007396290.1\|3341528_3343103_+	Fic family protein	NA	NA	NA	NA
WP_007396156.1\|3344673_3346113_+	hypothetical protein	NA	NA	NA	NA
WP_007396158.1\|3346332_3346467_-	resolvase	NA	NA	NA	NA
WP_034933542.1\|3346467_3346707_-	hypothetical protein	NA	NA	NA	NA
WP_019087483.1\|3347124_3347724_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_007396161.1\|3347713_3348958_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
WP_112209677.1\|3349542_3351279_-	hypothetical protein	NA	NA	NA	NA
WP_039998494.1\|3351280_3351598_-	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA
WP_146750195.1\|3352427_3352748_-	hypothetical protein	NA	NA	NA	NA
WP_112209689.1\|3352773_3353253_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_083824501.1\|3353385_3354069_-	hypothetical protein	A0A1I9KF49	Aeromonas_phage	1.0e-09	29.4
WP_039998273.1\|3354269_3355100_-\|transposase	IS5-like element IS1032 family transposase	NA	NA	NA	NA
3354360:3354519	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP050140

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP050140_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP050140_1

75-168

Orphan

Consensus_repeat	Method
TCAGTTCTCAGTGAAAATCAACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP050140_1

>merge|NZ_CP050140|1|75-168|CRISPRCasFinder
TCAGTTCTCAGTGAAAATCAACAGTCAACTCTTCAGCATCCTCCCAGGACCACTGCGAGCCGTCCACACCATCAGTTCTCAGTGAAAATCAACA

>NZ_CP050140|1|1|75-168|CRISPRCasFinder
TCAGTTCTCAGTGAAAATCAACA	GTCAACTCTTCAGCATCCTCCCAGGACCACTGCGAGCCGTCCACACCA
TCAGTTCTCAGTGAAAATCAACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP050140.1\|WP_112210244.1\|5572_6718_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050140.1\|WP_112210241.1\|2610_4953_-\|TraM-recognition-domain-containing-protein	unknown	unknown	gnl\|CDD\|274760
NZ_CP050140.1\|WP_082267062.1\|177_453_+\|MucR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|227293
NZ_CP050140.1\|WP_007396178.1\|6714_7224_-\|lytic-transglycosylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|381603
NZ_CP050140.1\|WP_039998253.1\|7220_7643_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050140.1\|WP_007396655.1\|1087_1267_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050140.1\|WP_010511855.1\|7639_7888_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050140.1\|WP_081749555.1\|476_1082_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050140.1\|WP_112210243.1\|4956_5562_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050140.1\|WP_112210239.1\|1309_2614_-\|DUF1173-family-protein	unknown	unknown	gnl\|CDD\|369028

Protein	Function_ID	Function_description	E-value
NZ_CP050140.1\|WP_112210241.1\|2610_4953_-\|TraM-recognition-domain-containing-protein	gnl\|CDD\|274760	TIGR03743, SXT_TraD, conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains. [Mobile and extrachromosomal element functions, Other].	3.67834e-07
NZ_CP050140.1\|WP_082267062.1\|177_453_+\|MucR-family-transcriptional-regulator	gnl\|CDD\|227293	COG4957, COG4957, Predicted transcriptional regulator [Transcription].	2.43336e-18
NZ_CP050140.1\|WP_007396178.1\|6714_7224_-\|lytic-transglycosylase-domain-containing-protein	gnl\|CDD\|381603	cd13400, LT_IagB-like, Escherichia coli invasion protein IagB and similar proteins. Lytic transglycosylase-like protein, similar to Escherichia coli invasion protein IagB. IagB is encoded within a pathogenicity island in Salmonella enterica and has been shown to degrade polymeric peptidoglycan. IagB-like invasion proteins are implicated in the invasion of eukaryotic host cells by bacteria. Lytic transglycosylase (LT) catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Members of this family resemble the soluble and insoluble membrane-bound LTs in bacteria and the LTs in bacteriophage lambda.	3.72914e-34
NZ_CP050140.1\|WP_112210239.1\|1309_2614_-\|DUF1173-family-protein	gnl\|CDD\|369028	pfam06666, DUF1173, Protein of unknown function (DUF1173). This family contains a group of hypothetical bacterial proteins that contain three conserved cysteine residues towards the N-terminal. The function of these proteins is unknown.	2.48918e-53

>NZ_CP050140.1|WP_082267062.1|177_453_+|MucR-family-transcriptional-regulator
MTLEEYRRKWGLPSHYPMVAPNYTVRRSELAREIGLGRDITSAATEFDDMGNGTGIAREVAGEASGQKEGHPPKAERAVRRGGVAVLLIQS
>NZ_CP050140.1|WP_081749555.1|476_1082_-|hypothetical-protein
MTALHTSFVLGYHGCSEEVGRKLINGESAPTPSETDYDWLGPGFYVWESDPLRAQEWAYQKQRRDSGFKPFVIGLVVDLGNCLDLTTREDLEMLKTAYEGLRETLSTDDIPMPVNRDSRHDVNSDKLFRNLDCAVIRYLHDSIEAPESHLAPYDTVRGLFQEGGELYPGSAFREKTHTQIAIRNLDCIKGIFRLPDSSVGI
>NZ_CP050140.1|WP_007396655.1|1087_1267_-|hypothetical-protein
MKLNSHQVALAAIRKQTLANTKSKRTAHAALLRMGIIDSKGAVTKEYTRDPRIEGMLKA
>NZ_CP050140.1|WP_112210239.1|1309_2614_-|DUF1173-family-protein
MTGTIIILPGGERFQLEWRRTDPERWGRRLKAKYDESWSAERSDKARCLCQHRGASLPLQIRYRADSHSYHLAVWPNEGPLHEKTCPFYKPDPEKSGRASYVNSVIREGEDGDVAVTLSIGLRRKGPPRPVDDTPLPASDRPGQARQRRMTPLGLLHLLWERAGLTEWRPQFARHRTPTAALGRIASAGTRIRAQGRLISDLLCPVAPGHEKFGRRFHAIVRTEGKENHLFLIGFVEALEPDPRGNFTMTLSGQRNGYRCFLTVPAAERNRLARSHQLAAATLALPEAARQAHVVALLYVTARNIGTHNSRWRGWIQAEVRTGALMTVSRSMLPFESSHELAVADALVAAGRAFEKPLRFDAERDLVFPDFILQDTARSDGYPMEVFGRTDEAYTTRRAEKENYYDATFGAGGWWSWDATTGSRMPPFPSGRLR
>NZ_CP050140.1|WP_112210241.1|2610_4953_-|TraM-recognition-domain-containing-protein
MVKREIGGPQVHQQLKHGSTYRDTRPFTVRIAEELQSSSSGFALMILAGLSVLAPAIVGIIFPLALCLTLWVMTRQPVLPFHLPRYSGLKDKHDLDPKTRRPRAAAGIIYLGTDGLTGQQLWLSSDAGRQHAAVPGTTGAGKTTSAISLLANPLAHGSGFILIDGKGDNTVHGDVLALARRFGLDDQVLNLNFLTASGIRQSNTFNPFATGNADAIREMLVSQLGEPSSNDANGVFRDRAVGLAGTIAPVLTWMRDTHGVPINIETMRYAMELRWIGTLARHRVFLIRNPGSDHPIEISVPEIPDDILYPAQAYLGELPGYDSSLAWNEQKENKPSEQHGYAKMYFTRVFTQLGVSLGHIFRAQIPDIDMRDVVLNRRILVVTLPALENSSDTLAGLGKIVVAAGRGVMAQLLGARLDGPAEQVFKLKAGSGDAPFHFFYDELSAYVTDGMDRQLAMGRGLNCMFWLGFQDLPGLTTRIGDKAFTLLGNANLTHAMRLQDAMRTREWIEKQSDRIEVSQATHFEGNSAGSYREGRGAEVREVARIPWADLQSLIEGEAITMYAGRIVHSKTFFAAVNGRSGAIRMAQPVMLAAPLDLNRVPPDQQLLALLATIEGGLFQSELTTVHDEPDVRALEEAVDRLGSGSQDILRNFAQIGAAVAAAPRRVATANDDEENEHAAGTDMLTPFSYMLRDAASIPKPGFRTPPRTIPPIDGHLLGRLEAIERRVDRQPGVARRQALLLLGVRDAMTKGAPKEGAASTGMTEKEILAQIRILREKTSA
>NZ_CP050140.1|WP_112210243.1|4956_5562_-|hypothetical-protein
MTRIILHADGRAPITIELDGTGLQPLHFHLGSDFGHTETNDAAATLPEAAAARRWRLKKALPALIAGGLAAILIIGTRQAMVSDRAVPDTGPTGMLRPPAILPPLSGAPMTDEGAPGVRSTYVPGARMPVDGNVVGNPDGHPASAEIDAARRIMAQRPVITYPQPPGSAQTAPTAPVSPTAPTAPVAPTIDTGKSPFGLED
>NZ_CP050140.1|WP_112210244.1|5572_6718_-|hypothetical-protein
MSTNRVPWSSSDDYLLFSSIIIIVGVLLFSYMAWSLWHTQITAVYLWAMLGQINLLHTSNPDLMRLQVQLQAAQYRPDLVRAIQLYYGLAILGNALKWPVAIVIALLGGLCMWRAAPGRFAKALDLEGLIAVQAEMFPTLKGFVRRRLDRLVTPTDGIPLPADPALTRAEWGARFAVDAQGRYSETGALEAFTRQLGRHWSSINAASPVEQVLLVAFAMHYLQRRREALALLGELSAGLADAGLDGPHGPLAPLTVPESVMRSARSALQDKEITNCIDTVCERSGWSVTALMTLLHEARRQAGVLAPSSFAIVKLIDRSLWYALHSLGFPAEIPAEDLHPNPRIEAAGARAHWSEERRYQRPIYIPAVENALAILRPMPEA
>NZ_CP050140.1|WP_007396178.1|6714_7224_-|lytic-transglycosylase-domain-containing-protein
MILRLALAALGAFPLFVASTTARATSIEENGRQIAACLEASAKISGVPRGVLLVLLYVEAGRPGMVSPNGNGTADLGPMQVNTTWVDRIARRWHSTPAQTYAALRDSSCANIEAGAWILGQAMHEAHGDLWQAVAFYHSHTPRHGNAYLRRFYDIALTMMARNRRDDRS
>NZ_CP050140.1|WP_039998253.1|7220_7643_-|hypothetical-protein
MSAIDLAAISAAQTRLLAEIGKPIELLDRGTGKRVVVSPADAAHPEAYLPVFLISAEALWLELTGTGFALDVSRTPDSALGYAVRKVRAGSFTVVMLCLIDVTMRLAEMDDALVLNHLIDFWGEAHGRIADVAPTLQGAT
>NZ_CP050140.1|WP_010511855.1|7639_7888_-|hypothetical-protein
MWRATAYPVRVFILDARSCFPILISVTHWSLTTLLIGVFGVVFFGTISFFGLTLPAAIRSMRRFLIGPVRTALPTWQRRRFS

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP050140_1	1.1\|98\|48\|NZ_CP050140\|CRISPRCasFinder	98-145	48	NZ_CP021468	Komagataeibacter europaeus strain SRCM101446 plasmid pKE1446-1	128051-128098	0	1.0
NZ_CP050140_1	1.1\|98\|48\|NZ_CP050140\|CRISPRCasFinder	98-145	48	NZ_CP050140	Komagataeibacter rhaeticus strain ENS 9a1a plasmid pENS1, complete sequence	98-145	0	1.0
NZ_CP050140_1	1.1\|98\|48\|NZ_CP050140\|CRISPRCasFinder	98-145	48	NC_016037	Komagataeibacter medellinensis NBRC 3288 plasmid pGXY010, complete sequence	52080-52127	1	0.979
NZ_CP050140_1	1.1\|98\|48\|NZ_CP050140\|CRISPRCasFinder	98-145	48	NZ_CP004365	Komagataeibacter xylinus E25 plasmid pGX5, complete sequence	208514-208561	2	0.958

1. spacer 1.1|98|48|NZ_CP050140|CRISPRCasFinder matches to NZ_CP021468 (Komagataeibacter europaeus strain SRCM101446 plasmid pKE1446-1) position: , mismatch: 0, identity: 1.0

gtcaactcttcagcatcctcccaggaccactgcgagccgtccacacca	CRISPR spacer
gtcaactcttcagcatcctcccaggaccactgcgagccgtccacacca	Protospacer
************************************************

2. spacer 1.1|98|48|NZ_CP050140|CRISPRCasFinder matches to NZ_CP050140 (Komagataeibacter rhaeticus strain ENS 9a1a plasmid pENS1, complete sequence) position: , mismatch: 0, identity: 1.0

gtcaactcttcagcatcctcccaggaccactgcgagccgtccacacca	CRISPR spacer
gtcaactcttcagcatcctcccaggaccactgcgagccgtccacacca	Protospacer
************************************************

3. spacer 1.1|98|48|NZ_CP050140|CRISPRCasFinder matches to NC_016037 (Komagataeibacter medellinensis NBRC 3288 plasmid pGXY010, complete sequence) position: , mismatch: 1, identity: 0.979

gtcaactcttcagcatcctcccaggaccactgcgagccgtccacacca	CRISPR spacer
gtcaactcttcagcatcctctcaggaccactgcgagccgtccacacca	Protospacer
********************.***************************

4. spacer 1.1|98|48|NZ_CP050140|CRISPRCasFinder matches to NZ_CP004365 (Komagataeibacter xylinus E25 plasmid pGX5, complete sequence) position: , mismatch: 2, identity: 0.958

gtcaactcttcagcatcctcccaggaccactgcgagccgtccacacca	CRISPR spacer
gtcaactcttcagcatcctctcaggaccactgcgagccgtccacaccg	Protospacer
********************.**************************.

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP050139

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP050140

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection