CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP050135	Kingella kingae strain ATCC 23331 chromosome, complete genome	2 crisprs	cas2,cas1,cas9,cas3,DinG,c2c9_V-U4,DEDDh,csa3	4	10	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP050135_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP050135_1

320862-321425

TypeII

Consensus_repeat	Method
GTTGTAGTTCCCTTTCTCATTTCGCAATGCTACAAT	CRISPRCasFinder
GTTGTAGTTCCCTTTCTCATTTCGCAATGCTACAAT	CRT
GTTGTAGTTCCCTTTCTCATTTCGCAATGCTACAAT	PILER-CR

8 spacers

cas2,cas1,cas9

The CRISPR arrays of NZ_CP050135_1

>merge|NZ_CP050135|1|320862-321425|CRISPRCasFinder,CRT,PILER-CR
AGTGTAGCTCCCTTTCTCATTTCGCAATGCTACAATGGCTCTTGTTTTTGGTATTCCAAAAATTCGGTTGTAGTTCCCTTTCTCATTTCGCAATGCTACAATCACCGAGCTGATGAAATGGTGTGTACGCCGGTTGTAGTTCCCTTTCTCATTTCGCAATGCTACAATTGCAAACAAAACGATCGCAGTCGGTAATAAGTTGTAGTTCCCTTTCTCATTTCGCAATGCTACAATCAAAATACGATGTTATCGTCGTGTTTGGAAGTTGTAGTTCCCTTTCTCATTTCGCAATGCTACAATTCAACTGGCGCGTGTGCTACGGCAATCTGTGTTGTAGTTCCCTTTCTCATTTCGCAATGCTACAATTAGTGGTGATGGCGTATTTGATTGGTTCGCGTTGTAGTTCCCTTTCTCATTTCGCAATGCTACAATCTGCAAAATGTCGGCTGCGTTCAAATCCAGGTTGTAGTTCCCTTTCTCATTTCGCAATGCTACAATGCACTGCGTACTGGGTAGGTGTAGTCGCATGTTGTAGTTCCCTTTCTCATTTCGCAATGCTACAAT

>NZ_CP050135|1|1|320862-321425|CRISPRCasFinder
AGTGTAGCTCCCTTTCTCATTTCGCAATGCTACAAT	GGCTCTTGTTTTTGGTATTCCAAAAATTCG
GTTGTAGTTCCCTTTCTCATTTCGCAATGCTACAAT	CACCGAGCTGATGAAATGGTGTGTACGCCG
GTTGTAGTTCCCTTTCTCATTTCGCAATGCTACAAT	TGCAAACAAAACGATCGCAGTCGGTAATAA
GTTGTAGTTCCCTTTCTCATTTCGCAATGCTACAAT	CAAAATACGATGTTATCGTCGTGTTTGGAA
GTTGTAGTTCCCTTTCTCATTTCGCAATGCTACAAT	TCAACTGGCGCGTGTGCTACGGCAATCTGT
GTTGTAGTTCCCTTTCTCATTTCGCAATGCTACAAT	TAGTGGTGATGGCGTATTTGATTGGTTCGC
GTTGTAGTTCCCTTTCTCATTTCGCAATGCTACAAT	CTGCAAAATGTCGGCTGCGTTCAAATCCAG
GTTGTAGTTCCCTTTCTCATTTCGCAATGCTACAAT	GCACTGCGTACTGGGTAGGTGTAGTCGCAT
GTTGTAGTTCCCTTTCTCATTTCGCAATGCTACAAT

>NZ_CP050135|1|1|320862-321425|CRT
AGTGTAGCTCCCTTTCTCATTTCGCAATGCTACAAT	GGCTCTTGTTTTTGGTATTCCAAAAATTCG
GTTGTAGTTCCCTTTCTCATTTCGCAATGCTACAAT	CACCGAGCTGATGAAATGGTGTGTACGCCG
GTTGTAGTTCCCTTTCTCATTTCGCAATGCTACAAT	TGCAAACAAAACGATCGCAGTCGGTAATAA
GTTGTAGTTCCCTTTCTCATTTCGCAATGCTACAAT	CAAAATACGATGTTATCGTCGTGTTTGGAA
GTTGTAGTTCCCTTTCTCATTTCGCAATGCTACAAT	TCAACTGGCGCGTGTGCTACGGCAATCTGT
GTTGTAGTTCCCTTTCTCATTTCGCAATGCTACAAT	TAGTGGTGATGGCGTATTTGATTGGTTCGC
GTTGTAGTTCCCTTTCTCATTTCGCAATGCTACAAT	CTGCAAAATGTCGGCTGCGTTCAAATCCAG
GTTGTAGTTCCCTTTCTCATTTCGCAATGCTACAAT	GCACTGCGTACTGGGTAGGTGTAGTCGCAT
GTTGTAGTTCCCTTTCTCATTTCGCAATGCTACAAT

>NZ_CP050135|1|1|320864-321425|PILER-CR
TGTAGCTCCCTTTCTCATTTCGCAATGCTACAATGG	CTCTTGTTTTTGGTATTCCAAAAATTCGGT
TGTAGTTCCCTTTCTCATTTCGCAATGCTACAATCA	CCGAGCTGATGAAATGGTGTGTACGCCGGT
TGTAGTTCCCTTTCTCATTTCGCAATGCTACAATTG	CAAACAAAACGATCGCAGTCGGTAATAAGT
TGTAGTTCCCTTTCTCATTTCGCAATGCTACAATCA	AAATACGATGTTATCGTCGTGTTTGGAAGT
TGTAGTTCCCTTTCTCATTTCGCAATGCTACAATTC	AACTGGCGCGTGTGCTACGGCAATCTGTGT
TGTAGTTCCCTTTCTCATTTCGCAATGCTACAATTA	GTGGTGATGGCGTATTTGATTGGTTCGCGT
TGTAGTTCCCTTTCTCATTTCGCAATGCTACAATCT	GCAAAATGTCGGCTGCGTTCAAATCCAGGT
TGTAGTTCCCTTTCTCATTTCGCAATGCTACAATGC	ACTGCGTACTGGGTAGGTGTAGTCGCATGT
TGTAGTTCCCTTTCTCATTTCGCAATGCTACAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP050135.1\|WP_003791335.1\|328178_328952_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP050135.1\|WP_003791354.1\|310335_310644_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050135.1\|WP_038320031.1\|329047_330307_+\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|223810
NZ_CP050135.1\|WP_166503165.1\|326390_328025_-\|FAD-dependent-5-carboxymethylaminomethyl-2-thiouridine(34)-oxidoreductase-MnmC	unknown	unknown	gnl\|CDD\|274478
NZ_CP050135.1\|WP_038311234.1\|310665_311403_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|187576
NZ_CP050135.1\|WP_003791355.1\|309691_310330_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371245
NZ_CP050135.1\|WP_003785236.1\|314892_316155_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050135.1\|WP_003785259.1\|331334_331691_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050135.1\|WP_032134027.1\|308108_309365_-\|lipoprotein-releasing-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|274034
NZ_CP050135.1\|WP_019389495.1\|321488_321815_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_CP050135.1\|WP_003791345.1\|313940_314723_-\|tryptophan-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|237285
NZ_CP050135.1\|WP_038303962.1\|322796_325979_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
NZ_CP050135.1\|WP_003791331.1\|330377_331268_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225431
NZ_CP050135.1\|WP_003791343.1\|316366_318544_+\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|223394
NZ_CP050135.1\|WP_003791326.1\|333780_334353_-\|carbonic-anhydrase	unknown	unknown	gnl\|CDD\|239474
NZ_CP050135.1\|WP_166503164.1\|313112_313937_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133038
NZ_CP050135.1\|WP_038311242.1\|332147_333719_+\|glutamine-hydrolyzing-GMP-synthase	unknown	unknown	gnl\|CDD\|234614
NZ_CP050135.1\|WP_019389496.1\|321807_322722_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NZ_CP050135.1\|WP_038311236.1\|318813_320778_+\|RNA-polymerase-sigma-factor-RpoD	unknown	unknown	gnl\|CDD\|235549
NZ_CP050135.1\|WP_003785230.1\|311883_313116_-\|sugar-transferase	unknown	unknown	gnl\|CDD\|274398

Protein	Function_ID	Function_description	E-value
NZ_CP050135.1\|WP_003791335.1\|328178_328952_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	2.19956e-126
NZ_CP050135.1\|WP_038320031.1\|329047_330307_+\|M23-family-metallopeptidase	gnl\|CDD\|223810	COG0739, NlpD, Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane].	1.22626e-21
NZ_CP050135.1\|WP_166503165.1\|326390_328025_-\|FAD-dependent-5-carboxymethylaminomethyl-2-thiouridine(34)-oxidoreductase-MnmC	gnl\|CDD\|274478	TIGR03197, MnmC_Cterm, tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein. [Protein synthesis, tRNA and rRNA base modification].	3.13296e-116
NZ_CP050135.1\|WP_038311234.1\|310665_311403_-\|hypothetical-protein	gnl\|CDD\|187576	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4. Atypical SDRs in this subgroup are poorly defined, one member is identified as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is related to, but is different from, the archetypical SDRs, GXGXXG. This subgroup also lacks most of the characteristic active site residues of the SDRs; however, the upstream Ser is present at the usual place, and some potential catalytic residues are present in place of the usual YXXXK active site motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	2.32492e-52
NZ_CP050135.1\|WP_003791355.1\|309691_310330_-\|hypothetical-protein	gnl\|CDD\|371245	pfam10786, G6PD_bact, Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49). This family is conserved in Firmicutes and Proteobacteria. Several members are annotated as being glucose-6-phosphate 1-dehydrogenase (EC:1.1.1.49) but this could not be confirmed.	3.20868e-54
NZ_CP050135.1\|WP_038311242.1\|332147_333719_+\|glutamine-hydrolyzing-GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
NZ_CP050135.1\|WP_032134027.1\|308108_309365_-\|lipoprotein-releasing-ABC-transporter-permease-subunit	gnl\|CDD\|274034	TIGR02212, releasing_system_transmembrane_protein_lolC., lipoprotein releasing system, transmembrane protein, LolC/E family. This model describes the LolC protein, and its paralog LolE found in some species. These proteins are homologous to permease proteins of ABC transporters. In some species, two paralogs occur, designated LolC and LolE. In others, a single form is found and tends to be designated LolC. [Protein fate, Protein and peptide secretion and trafficking].	1.44906e-170
NZ_CP050135.1\|WP_019389495.1\|321488_321815_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	6.44034e-49
NZ_CP050135.1\|WP_003791345.1\|313940_314723_-\|tryptophan-synthase-subunit-alpha	gnl\|CDD\|237285	PRK13111, trpA, tryptophan synthase subunit alpha; Provisional.	7.8845e-129
NZ_CP050135.1\|WP_038303962.1\|322796_325979_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
NZ_CP050135.1\|WP_003791331.1\|330377_331268_+\|hypothetical-protein	gnl\|CDD\|225431	COG2876, AroA, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism].	8.42721e-36
NZ_CP050135.1\|WP_003791343.1\|316366_318544_+\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	gnl\|CDD\|223394	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription].	0
NZ_CP050135.1\|WP_166503164.1\|313112_313937_-\|glycosyltransferase	gnl\|CDD\|133038	cd04195, GT2_AmsE_like, GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.	2.39146e-103
NZ_CP050135.1\|WP_003791326.1\|333780_334353_-\|carbonic-anhydrase	gnl\|CDD\|239474	cd03379, beta_CA_cladeD, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.	3.76702e-56
NZ_CP050135.1\|WP_003785230.1\|311883_313116_-\|sugar-transferase	gnl\|CDD\|274398	TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP), E. coli WcaJ, Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes, such as Sinorhizobium ExoY and Lactococcus EpsD, lack the N-terminal domain and are not found by this model.	1.70868e-101
NZ_CP050135.1\|WP_038311236.1\|318813_320778_+\|RNA-polymerase-sigma-factor-RpoD	gnl\|CDD\|235549	PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.	0
NZ_CP050135.1\|WP_019389496.1\|321807_322722_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	2.8598e-128

>NZ_CP050135.1|WP_038311236.1|318813_320778_+|RNA-polymerase-sigma-factor-RpoD
MSNQHFQDNDTDDNTLDDSRPLTPEEQRERLRRLIMLGKERGYITYAEINDSLPDDMSDAEQIDGIVNMIQSLGIQVTEEAPDADALLMNDNSTGITDDDAVAEAEAALSQADSEFGRTTDPVRMYMREMGQVELLTREDEIKIAKEIENALKNMIQAISACPGSVGEILELIEQIKKDEIRVDEVVEAIIDPNEVLLNELGLGHLESSLQSDNDAATDSDDSSDESDEDDDSDSGDAGSMDNQQNLEELKAEVLEHFKQIEKSYGLMIRALDKNDSKHAKYLEHRNNIAQKLLEVRFSTRQIEKLSDNLRSRVEQIRKLEREIRDICLDRVRMDREYFIEQFMPNATYLEWIDEEVAKNRVWSEALGRFKHAILEKQTEMAALEAHARISIAELKDISKNMVKSEKETAAAKQKMIQANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQYLQETGEEPDSAKLAELMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDVNNVAPADAAMYSSLREVTSDILESLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSDKLKSFLDSEEGK
>NZ_CP050135.1|WP_003791343.1|316366_318544_+|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase
MNPAHLQDYLDYANNQPAPEQKLLQAALKLAQTHYPDDAVTTSAHEPLLQHLLQAALMVRDMDLLAEAVAATLLTDISTYCTDWKTQVSEQCGQAVATLVAGIDEVQKLTHFAKVDALATPEERANQAETMRKMLLAMVSDIRVVLIKLALRTRSMQYLSQTPDSPQKRALAKETLDIFAPLANRLGVWQLKWQLEDLGFRHYNPEEYKRIAKLLDEKRTERLEYIEQFLSSLQTAVNQAGIQCDVAGRPKHIYSIYKKMVKKKLDFDGLYDIRAVRVLVNSVSECYTTLGIVHSLWQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGIEVQIRTHEMHEFNEFGVAAHWRYKEGGKGDSAYEQKIAWLRQLLDWRENMAESGKEDLAAAFKTELFNDTIYVLTPHGKVLSLPAGATPIDFAYALHSNLGDRCRGAKVNGQIVPLSTPLENGQRVEIIAAKEGVPSVNWLHEGWVKSNKAISKIRAYIRQQNAEAIREDGKNQFDKAIAKINPKPNHQQLCEKLGFKHLDDLFTAVGQGEVSPHAIQKAAGVLNEPPPVPISETSIVKKSKIQSGGKNGVLVGGEGGLLTNLAKCCKPAPPDLIVGFVTRDKGVSIHRQGCADFEHLATQSPEKVMTASWAGIDAGQMFAIDIEVRAQDRNGLLRDVSDALARHKVNVTAVHTQTRDLEASMRFTLEVKKVDELPRVLASLAEVKGVSGVMRL
>NZ_CP050135.1|WP_003785236.1|314892_316155_-|hypothetical-protein
MRLTHSALALALAFSFGNFAHANTLACSNSYGFRVDVSGNTGATVCSNTSSDLIDLVKDFSLSNSGYTQSSAAFAVGRINDVDFTASYAANSNDLVFNAPDLGIENKVFTGATRKKAQDAFEDWVKHSGIIGDMMRYQSKHSAASPITGAAGIMPTMAATDFNTEIQSVSNIATTPSSSTDNKESTTNADATPINNLIGTGVSIGSFSNNGERINSYTLPLSYSIGTGDDSRQQLIISVPLTMYTIGKAKGYHAGVGIAHRFPITQNWTLTPGVRYALTGSVDRATIASVTSASLTSTYHIPFEQFDLNIANMIGHYRTGKFKAGDYSFDPNIKQTMLRNGVMLSQPITLGSQQLAIEYSLIDTRYIGGQKPFMRDMQEFGVTLGTHRNNNSHQSFLRAGVSYVRAKDNNGFTFNFGYWF
>NZ_CP050135.1|WP_003791345.1|313940_314723_-|tryptophan-synthase-subunit-alpha
MSRIAQTFVQLGKRKALIPYITVGDPNLATTVQLMHSMAQAGASILELGVPFSDPMADGPTIQRAVERALANHVSLHDVLNVVREFRQSNQHTPVVLMGYLNPIHKMGYEAFAQAAAEAGVDGVLTVDSPIEHIAPLQEALKSRGVDCIFLIAPTTTEARMQEIAKRASGFVYYVSLKGVTGSAQLDTQAVADKIAVLRQHIHIPIGVGFGIHDANSAAQIAQVADAVIVGSCIVKQIEEHGSNAPQAVGDLVRELVAAI
>NZ_CP050135.1|WP_166503164.1|313112_313937_-|glycosyltransferase
MPTQYAPFSVLMSLYEREQPAFLNQCLSSLHTQTCLADEIVIVLDGNITPQLQAALNDWATRLPLRVLPLSHNVGLGKALNHGLAHCQHDWVFRMDTDDIAAPHRFERQLAYLATHPNVALLGAQIAEFTQSPEQAHGNRRVPESHQQIQQFAQKRNPFNHMTIAYRKSAVQQAGGYQHHWFMEDYNLWLRMLAQNVQAANLPDVLVYARTGTNMVQRRRGWQYVQSEWQLYQLKRQLRLQAPLAAVFCLLQRTLPRLLPTFLLQHLYTWLRRT
>NZ_CP050135.1|WP_003785230.1|311883_313116_-|sugar-transferase
MKPTPSLFIRLLTGIVLAAITTELYLFFKDINPLNSKVINSNLISLLAYTLAAISINKLLYFPGKQSWLHILPAVGLSYSSVFGMSAVFFVTFSNSFVITNGILATAFFVGDFIRRNRHIPHIAYIPIGRASQAQQIPHVNWIELQQPVLPQSSLQSVVADLHSPDLTPEWQKFLAACTLRGIPVYNIRQIQESLTGRVQIHHMYENDLGSLLPSPAYMLVKRLLDIVCVLCALPFALPLMLLTAIAIRLESSGSVLFTQNRVGQGGREFRIYKFRSMSQDSEKDGAKLAQVGDSRITQVGHFIRKTRLDELPQFFNILKGDMSLIGPRPEQKVFVEQFEQSIAFYNYRHIVKPGLSGWAQVTQGYAGNEDETRVKIEHDFYYIKHFSLSLDLLIVFKTIKIILTGFGAR
>NZ_CP050135.1|WP_038311234.1|310665_311403_-|hypothetical-protein
MTISVLIIGMGFVGRALAESLYQQNIAVGAIKRHLTSDDVNLPIALDAADLNRPVWQAHWANYTTWVLLLPPSAMADYAATVAWWVQQGQRVGVQHWIYGSSVGVFGATQGVCDERTVPTPSTESGKKVQAAEQLLLNSGATNVDIVRLGGLYAAERHPLYSLLRREMPLSGGNAVANMIHRDAAVATLVQAALSPNGCRIMHAVEQPALCKRDFYAREAKKLGQPAPVWLDDAPASAKQIISTT
>NZ_CP050135.1|WP_003791354.1|310335_310644_-|hypothetical-protein
MDWCQIFLHCMIWVVGVVVVCVGLWLVVMIPIMLITAFVGLIYGSIPLFLPFLPPFWATLASSSNDNKKKGFDWGDKTEADRHRDLVEHIRIQQMNEDRHRR
>NZ_CP050135.1|WP_003791355.1|309691_310330_-|hypothetical-protein
MQQPILTAWHCDTLNQPFYQFAQMKQFAPDSIETVKAHYRVAWTDWKQFVQQVQAALQASGLPIGATHIERWCNGWQVRAHLFAFFKLAGHEHDAPILSLILNRQNLIVSLDWHAYRAAKSNSTVGQYHGYLAQLAHANWHDWHIWRGKDSEYATHPLVGEKQPAHYSWREGDDFYRIGKTLSRDELAQHDCVAWTAQHLQQLAQLYARCFD
>NZ_CP050135.1|WP_032134027.1|308108_309365_-|lipoprotein-releasing-ABC-transporter-permease-subunit
MVSLETWIGLRYLRAKKRSGFMSFISVMSIVGIALGVIALIVVLSVVNGFQKEIRGQLLNIAPHAEVGHIVTGENATQTWQSLQQKFAGKPQVLATAPYVAGQGLIANSGEVRGIQLRGILPEQEKSVVDFANKMSAGSFDDLKADEFSIILGSGLAQILGAEVGGKVTVITPEGNVTPAGVVPRLKQFSVVGIVKTGVDEADNSMALIHLADAQKLYRLDDAMIGLRLKLADPQNAPAVMQTLLPESERTNLWTQNWTDNNRSYFNAVEMEKRMLTLLLTCIIVVAVFNLVSSLVMAVNEKQSDIAILRTLGLSPRGVMKIFVVQGMVSGVLGTLTGLVLGLLLAWKIGAIIAQIEQWFGVQFVSSQVYFINYLPSDIQTSDVIGVVSISLILSLLATLYPSWSASRTQPAEALRYE
>NZ_CP050135.1|WP_019389495.1|321488_321815_-|CRISPR-associated-endonuclease-Cas2
MSENQFMRIIVFFDLPVTSRAKRKAANDFRRFLVKDGYIRLQLSVYTRIVRGRDMLEKYHKRLCANLPKEGSVRCLEVTEKQFVAMKVLLGDKPTQEKRVNAQQFLLF
>NZ_CP050135.1|WP_019389496.1|321807_322722_-|type-II-CRISPR-associated-endonuclease-Cas1
MSWRSLLISKGGKLSLHNNQLLIAQQDGSHTVPLEDIAIIVVENRETVLTAPLLSALAQNGIGLLTCDEQFLPCGQWLPFAQYHRPLKTLNLQLNATLPQKKQLWQKIVRQKIINQSFVLNEMGADKAAERLLHFAEKVKSGDSDNQEAQAAAYYFQVAFGDEFTRQQENSLNAHLNYGYTILRSAVARALVQYGWLPALGLHHHNEQNPFNLADDVIEPFRPLVDLWVHTATLSGSLQDELTPHNKQNLIQLLHYQMRWRGQIFTTLGAIDRAVASLQAALKEKDAQKLTLPELLSLKEHNYE
>NZ_CP050135.1|WP_038303962.1|322796_325979_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MAAKSLNYILGLDLGIASCGWAVVEMDEQENPLRLIDVGVRTFEEAENPKDGSSLAETRRLARAQRRLINRRANRMNKLRRLLKQENVLQANDYDEKGLIIGLPNQAWELRAQGLDRKLEPKEWAAVLIHLVKHRGYLSQRKNESQTADKELGALLSGMNHNHQLLQSQSNQYRTPAELAIKQFATQDGHIRNQRGAYTHTFNRLDLQNELNQLFDAQTRLGNPHVSGSLKTAINDLLMNQKAALSGDAILEMLGRCTSEPSEYKAAKNTYSAERFVWLGKLTNLRIQDNGLESALSREQRELLLNEPYNKTKLTYQQVRKLLRLPETAFFKGLRYGKDNAESATFMEMKSYHAIRKSLENKSLKSEWEKLKTQPKLLDLIGTAFSIYKTDDEIAGCLKNQLPENVIIALQEQLNFSNFMELSLKALEKLLPLMEQGLRYDEADTQIYGNRHEKIADETEKFLPNIPADKLRNPVVLRTLTQARKVINAIIRRYGSPARVHIETGREVGKSFSDRDKLKKQQEENQEQRQRAIDEWKQFFPNAAHEPKAVDILKLRLYQLQQGKCLYSGLPIDVRRLPEKGYVEIDHALPFSRTWDDSFNNKILVLASENQNKGNQTPYEYLRGADNSESWRLFVENVQNCQFSPNKKQKIMAKQLDEKGFLERNLNDTRYVSRFLCQFISEYLHLTGKGKKRVFASNGQITALLRGRWGLSKNREENDRHHAVDAVVVACSTVAMQQKITQFVRYQKGNVFTGERIDKETGEVISIHFPTPWEHFREEVMIRVFDDNPLRTLPEKLPNRPEALHEYVMPLFVSRMPTRKMTGQGHKETIKSAKRLDEKISVLRVPLTQLKLNDLENMVNREREPALYEALKARLEQFKNDPAKAFAEPFFKQGGQQVKAVRVEIVQKSGMLLRKINGVADNGSMVRVDVFEKSGKFYLVPIYAWQVAEGILPNHAVVHSKDESDWILMDESYHFKFTLYKNDLLEVQTKKGCIMGYFASLDRATGAITIREHDRDKKKCKDGEHRSIGVKMASSFKKLQVDELGKNIHETRSRKRPNIG
>NZ_CP050135.1|WP_166503165.1|326390_328025_-|FAD-dependent-5-carboxymethylaminomethyl-2-thiouridine(34)-oxidoreductase-MnmC
MTLNLPVYAWNVSPTWSQVVQFEQHNPHEKHVVWCVLPDSVPHYELTSPQNEYESSLHLAIQNALSCATTQAVHCVPNAWQNTHLWLIPQSQASSLHAHFSVPIQWQTEAIAPAPEVSPKAWQTPPAADCRDPSSLHILIIGAGIAGAATAYECAIRGAKVTVLEAQSQVAQAGSGNRQGLLYAKISPHATEQTELLLSGYGYTRHLLRRLLPEQTTWQACGVLHLNHNAKEAERNRKLAQQTQHAHLYRAVSAQQASELAGICIEQDGLFWQQGAWLNPASLVQKLLSHPNITLHTNQRLIQADYDGVMWHVRSNTHTWQGSHLVFCTGASSLHTPIAQTLPLQIIRGQTSLVAANKNSLQLKIALSGASYISPAWQGEHCFGATFAPNCADDTWQSADEQHNRNELAKLNNTLYQSFSTLWNEPSSLHESSHGHAALRCDCHDHLPAVGALGDADAMRRVYAQYALDKNYRINTPCPYLPNAYINTAHGSRGLATAPLCAADIAAQIMNTPRLLSLRLRHALNPNRLIIKELVHGKVGAKSQ
>NZ_CP050135.1|WP_003791335.1|328178_328952_+|5'/3'-nucleotidase-SurE
MNILISNDDGYLSQGIALLARLAGEFANVRVVAPERDKSGTSNSLTLDKPLRIRTASNGFQFVNGTPTDCIHVGMHVLAQSDFKPDLVLSGVNHGANMGDDTVYSGTVAAATEAYLMGIPAVAFSLNSHRFDLFTETVEKAVWSVLSHIMQQPPTSPVLWNVNIPAVAVQDLCGIKVTRLGLRHHEQNVIESTDPRGAPIYWIGPAGEVRDNQADTDFAACDAGWISITPLQMDLTAHNQIDKLQAAWQDFRLQECP
>NZ_CP050135.1|WP_038320031.1|329047_330307_+|M23-family-metallopeptidase
MNTNKKTACLLLSLVAAAILSACSSAQQAPAPVVSGTNTGGYGYDNGTVTTPYGTVNTPYGTTGSPTDTANNPYNTAPYASAATATPSATPYTPAATTTPTAAPYTPATGTAYTPTASTGSTFIPNYSPVDKNASTHRVQAGDTVYNISKRYGISQEQLMQWNNLSGTTLSIGQTLRVKPVGSSSRTNAAPVTAAKTGTGSQHKVVAGDTVYNISKRYGISQEQLRQWNNLNGNNIQLGQVLRVSQSGRATSTATTAAAAPYVPAKQPAPAAVTTTNTAAATTTATTPAVVATPTPVVASVRTQTKDGIVWQSPLPNGSVTQEFGTNRGMLIDGKGANAVAAADGQVIHIGALRNYGNLLIVQHSDQHLTAYAQIASALVQNGQKVVRGQPVATLGSNKLLFEVRSDGKAVNPTTYIPF
>NZ_CP050135.1|WP_003791331.1|330377_331268_+|hypothetical-protein
MIIVMQATAQDEDVQRVVQTIRQQGLSEHISRGKECTIIGAVGDERVFDIAQIEALPQVERAIRIVQDWRIISREAWAQDTQITVRGMALGGHSGIRKIQAIAQTDASSLHLNADSDAALFDPFYTPANPCARAGCFSLENTTQTLHDISQICRQNNKIIVMRIRDSAHLEVALSVQADILYLGGELLANRSLLQEVGSLNIPTIVCKDNHHRVRDWLVAAEQIVLRGNQHVILGDAGTLSLHGEPLRLDVDALVAAKKLSHLPVLANISQLAHRHMDKQTLWALACAAQVDAIIV
>NZ_CP050135.1|WP_003785259.1|331334_331691_-|hypothetical-protein
MNYDKTVSEMLNVDGALAAAVVDYSSGMLLAGGGSAAIDLEIAAAGNTEVMRAKMKTMGMLGLKDNIEDILITLGKQYHLLRPLAKHDGLFLYSVLDRSKSNLALARRSLVDAENNLN
>NZ_CP050135.1|WP_038311242.1|332147_333719_+|glutamine-hydrolyzing-GMP-synthase
MTNQDKILILDFGSQVTQLIARRVREAHVYCELHSFDMPLDEIKAFNPKGIILSGGPNSVYESDYQADVGLFDLGVPVLGICYGMQFMAHHLGGEVSAGNQREFGYAQVKTIDCELTRDIHDGTPNVLDVWMSHGDKVSKLPMGFAVIGDTPSCPIAMMEHAEKQFYGIQFHPEVTHTKQGKALLNRFVLDICGAKPSWTMPNYIEEAIVKIREQVGNEEVILGLSGGVDSSVAAALIHRAIGDQLTCVFVDHGLLRLNEGKNVMDMFARNLGVKVVHIDATEQFMGKLAGVTDPEQKRKIIGAEFIEVFDAEEKKLTNAKWLAQGTIYPDVIESAGAKTKKAHAIKSHHNVGGLPENMKLKLLEPLRDLFKDEVRELGVALGLPREMVYRHPFPGPGLGVRILGEVKREYADLLRRADDIFIEELRNTIDEQSGKSWYDLTSQAFAVFLPVKSVGVMGDGRTYDYVVALRAVITSDFMTAHWAELPYSLLGKVSNRIINEIKGINRVVYDVSGKPPATIEWE
>NZ_CP050135.1|WP_003791326.1|333780_334353_-|carbonic-anhydrase
MSELNHILQHNQSFVDSGAYEHFLTNKYPERKLAILSCMDTRMVELLPAALGLRNGDVKLIKNAGAVVTHPWGSVMRSLLVAVLELRVEEIMVIAHYDCGMRGLNAQAFLAKAEEQGVPEDRITTLRHAGIDLDNWLTGFDSVEDSVRHTVSLIRKHPLMPANIAVHGLVIHPVTGKLTVVVHGDESCAI

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Crispr_ID: NZ_CP050135_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP050135_2

447422-447518

Orphan

Consensus_repeat	Method
AAAAGCAGCCTGCACTTTGAAACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP050135_2

>merge|NZ_CP050135|2|447422-447518|CRISPRCasFinder
AAAAGCAGCCTGCACTTTGAAACAGGCTTGCGTGTGGAAGTTTGGTTGTCTTTTGATTGAATCAATAAAATAGAAAAGCAGCCTGCACTTTGAATCA

>NZ_CP050135|2|2|447422-447518|CRISPRCasFinder
AAAAGCAGCCTGCACTTTGAAACA	GGCTTGCGTGTGGAAGTTTGGTTGTCTTTTGATTGAATCAATAAAATAG
AAAAGCAGCCTGCACTTTGAATCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP050135.1\|WP_032828289.1\|458538_459762_+\|sugar-MFS-transporter	unknown	unknown	gnl\|CDD\|340952
NZ_CP050135.1\|WP_003791188.1\|447553_448531_-\|malate-dehydrogenase	unknown	unknown	gnl\|CDD\|235468
NZ_CP050135.1\|WP_003787424.1\|439460_439730_-\|HPr-family-phosphocarrier-protein	unknown	unknown	gnl\|CDD\|376329
NZ_CP050135.1\|WP_164538267.1\|455571_458277_-\|phosphoenolpyruvate-carboxylase	unknown	unknown	gnl\|CDD\|234570
NZ_CP050135.1\|WP_032828178.1\|453093_453969_-\|RNase-adapter-RapZ	unknown	unknown	gnl\|CDD\|235450
NZ_CP050135.1\|WP_038311280.1\|453949_454918_-\|HPr-kinase/phosphorylase	unknown	unknown	gnl\|CDD\|235459
NZ_CP050135.1\|WP_038311275.1\|441504_443337_+\|phosphogluconate-dehydratase	unknown	unknown	gnl\|CDD\|181628
NZ_CP050135.1\|WP_003791195.1\|443657_444518_-\|acetyl-CoA-carboxylase-carboxyltransferase-subunit-beta	unknown	unknown	gnl\|CDD\|235547
NZ_CP050135.1\|WP_032828177.1\|459903_461289_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341025
NZ_CP050135.1\|WP_003791185.1\|451590_452841_-\|serine-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|234571
NZ_CP050135.1\|WP_003791190.1\|446228_447005_+\|GTP-cyclohydrolase-I-FolE2	unknown	unknown	gnl\|CDD\|237466
NZ_CP050135.1\|WP_003791169.1\|461291_461813_+\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|136097
NZ_CP050135.1\|WP_003791194.1\|444636_445794_-\|PLP-dependent-transferase	unknown	unknown	gnl\|CDD\|223699
NZ_CP050135.1\|WP_003787426.1\|439773_440166_-\|PTS-mannose-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|225446
NZ_CP050135.1\|WP_003787419.1\|436884_437652_-\|triose-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234589
NZ_CP050135.1\|WP_038311273.1\|437721_439458_-\|phosphoenolpyruvate--protein-phosphotransferase	unknown	unknown	gnl\|CDD\|224006
NZ_CP050135.1\|WP_003791200.1\|440288_441266_-\|FAD:protein-FMN-transferase	unknown	unknown	gnl\|CDD\|224394
NZ_CP050135.1\|WP_166503184.1\|436510_436882_-\|preprotein-translocase-subunit-SecG	unknown	unknown	gnl\|CDD\|273280
NZ_CP050135.1\|WP_003787459.1\|454984_455428_-\|PTS-IIA-like-nitrogen-regulatory-protein-PtsN	unknown	unknown	gnl\|CDD\|162350
NZ_CP050135.1\|WP_003791186.1\|448749_449625_-\|ribosome-small-subunit-dependent-GTPase-A	unknown	unknown	gnl\|CDD\|234631

Protein	Function_ID	Function_description	E-value
NZ_CP050135.1\|WP_032828289.1\|458538_459762_+\|sugar-MFS-transporter	gnl\|CDD\|340952	cd17394, MFS_FucP_like, Fucose permease and similar proteins of the Major Facilitator Superfamily of transporters. This subfamily is composed of L-fucose permease (also called L-fucose-proton symporter) and similar proteins such as glucose/galactose transporter and N-acetyl glucosamine transporter NagP. L-fucose permease facilitates the uptake of L-fucose across the boundary membrane with the concomitant transport of protons into the cell; it can also transport L-galactose and D-arabinose. Glucose/galactose transporter functions in the uptake of of glucose and galactose. The FucP-like subfamily belongs to the bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4 (FucP/MFSD4) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.22763e-144
NZ_CP050135.1\|WP_003791188.1\|447553_448531_-\|malate-dehydrogenase	gnl\|CDD\|235468	PRK05442, PRK05442, malate dehydrogenase; Provisional.	0
NZ_CP050135.1\|WP_003787424.1\|439460_439730_-\|HPr-family-phosphocarrier-protein	gnl\|CDD\|376329	pfam00381, PTS-HPr, PTS HPr component phosphorylation site.	1.45334e-36
NZ_CP050135.1\|WP_164538267.1\|455571_458277_-\|phosphoenolpyruvate-carboxylase	gnl\|CDD\|234570	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed.	0
NZ_CP050135.1\|WP_032828178.1\|453093_453969_-\|RNase-adapter-RapZ	gnl\|CDD\|235450	PRK05416, PRK05416, RNase adapter RapZ.	1.38715e-144
NZ_CP050135.1\|WP_038311280.1\|453949_454918_-\|HPr-kinase/phosphorylase	gnl\|CDD\|235459	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional.	1.83135e-141
NZ_CP050135.1\|WP_038311275.1\|441504_443337_+\|phosphogluconate-dehydratase	gnl\|CDD\|181628	PRK09054, PRK09054, phosphogluconate dehydratase; Validated.	0
NZ_CP050135.1\|WP_003791195.1\|443657_444518_-\|acetyl-CoA-carboxylase-carboxyltransferase-subunit-beta	gnl\|CDD\|235547	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta.	0
NZ_CP050135.1\|WP_032828177.1\|459903_461289_+\|MFS-transporter	gnl\|CDD\|341025	cd17472, MFS_YajR_like, Escherichia coli inner membrane transport protein YajR and similar multidrug-efflux transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli inner membrane transport protein YajR and some uncharacterized multidrug-efflux transporters. YajR is a putative proton-driven major facilitator superfamily (MFS) transporter found in many gram-negative bacteria. Unlike most MFS transporters, YajR contains a C-terminal, cytosolic YAM domain, which may play an essential role for the proper functioning of the transporter. YajR-like transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.56405e-128
NZ_CP050135.1\|WP_003791185.1\|451590_452841_-\|serine-hydroxymethyltransferase	gnl\|CDD\|234571	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed.	0
NZ_CP050135.1\|WP_003791190.1\|446228_447005_+\|GTP-cyclohydrolase-I-FolE2	gnl\|CDD\|237466	PRK13674, PRK13674, GTP cyclohydrolase I FolE2.	3.28976e-131
NZ_CP050135.1\|WP_003791169.1\|461291_461813_+\|single-stranded-DNA-binding-protein	gnl\|CDD\|136097	PRK06863, PRK06863, single-stranded DNA-binding protein; Provisional.	6.8983e-55
NZ_CP050135.1\|WP_003791194.1\|444636_445794_-\|PLP-dependent-transferase	gnl\|CDD\|223699	COG0626, MetC, Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism].	1.05563e-179
NZ_CP050135.1\|WP_003787426.1\|439773_440166_-\|PTS-mannose-transporter-subunit-IIA	gnl\|CDD\|225446	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism].	2.58138e-25
NZ_CP050135.1\|WP_003787419.1\|436884_437652_-\|triose-phosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	7.14799e-112
NZ_CP050135.1\|WP_038311273.1\|437721_439458_-\|phosphoenolpyruvate--protein-phosphotransferase	gnl\|CDD\|224006	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism].	0
NZ_CP050135.1\|WP_003791200.1\|440288_441266_-\|FAD:protein-FMN-transferase	gnl\|CDD\|224394	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism].	6.71433e-56
NZ_CP050135.1\|WP_166503184.1\|436510_436882_-\|preprotein-translocase-subunit-SecG	gnl\|CDD\|273280	TIGR00810, secG, protein translocase, SecG subunit. This family of proteins forms a complex with SecY and SecE. SecA then recruits the SecYEG complex to form an active protein translocation channel. [Protein fate, Protein and peptide secretion and trafficking].	5.90731e-17
NZ_CP050135.1\|WP_003787459.1\|454984_455428_-\|PTS-IIA-like-nitrogen-regulatory-protein-PtsN	gnl\|CDD\|162350	TIGR01419, nitro_reg_IIA, PTS IIA-like nitrogen-regulatory protein PtsN. This model describes a full-length protein of about 160 residues closely related to the fructose-specific phosphotransferase (PTS) system IIA component. It is a regulatory protein found only in species with a phosphoenolpyruvate-protein phosphotransferase (enzyme I of PTS systems) and an HPr-like phosphocarrier protein, but not all species have a IIC-like permease. Members of this family are found in Proteobacteria, Chlamydia, and the spirochete Treponema pallidum. [Signal transduction, PTS].	2.18956e-49
NZ_CP050135.1\|WP_003791186.1\|448749_449625_-\|ribosome-small-subunit-dependent-GTPase-A	gnl\|CDD\|234631	PRK00098, PRK00098, GTPase RsgA; Reviewed.	1.77545e-138

>NZ_CP050135.1|WP_003791190.1|446228_447005_+|GTP-cyclohydrolase-I-FolE2
MSAIADVQSSKDLRNIPINQVGIKDLRFPIRVQSAQGEQHTVARLTMTVFLPADQKGTHMSRFVALMEEQQLAFNAHNLRDLTAQMVAKLDSHSGKISATFPFFRTKTAPVSGIQSLLDYDVTLSCEIVQGKAQSSLRVLVPVTSLCPCSKEISQYGAHNQRSHVTVSLNTNAPVEVEEVLDWVEQQASCQLYGLLKRPDEKFVTERAYENPKFVEDMVRDVATILQQDSRIDSFVLESENFESIHNHSAYAVIEWAR
>NZ_CP050135.1|WP_003791194.1|444636_445794_-|PLP-dependent-transferase
MQFSTKTIHAAYDADEHQRAIMPPLYQNSMFAMHELEENIPFRYSRLANPTRKILEDTVAELENGTHGFAFGSGMAAIDCIFRTFLQPNDTIVAVSDIYGGSYDLLHDVYAKWGVNVIFADLTKPENLDKILAEQKVKMIWLETPSNPLLRVVDIELLTQKAKAHGALVGIDNTFATPYLQNPLDLGCDIVFHSATKYLCGHSDVLMGVAVVKDEKLAKPLQNMMVMTGGIAGPMDCWLVLRGIKTLSVRMKQHIANAQILAERLEQHPAIERVFYLGLPSHEHHELAKRQMRGFGGMVTVYLKNDTREAVNSVIKNLHMLQLASSLGGVESLVNHCYSQSHSGMAHDVKMALGIRVGLLRFSVGIEDIEDIYADIDQALNTTLS
>NZ_CP050135.1|WP_003791195.1|443657_444518_-|acetyl-CoA-carboxylase-carboxyltransferase-subunit-beta
MSWLDKILPPKIKKSDNKSGIPEGLWSKCDACGATQYVTDVVKNHHVCPKCGHHEALSARERLDMLLDEEGREEIATNIKPTDILKFKDSKKYLDRLSAAKKATGEDDAIVVMKGSLHGLPVVVAAFEFRFIGGSMGSVVGERFVQGVRRAVADNCAFICVAASGGARMQEGLSSLMQMTKTSASLHLLREKDLPFISVLTDPTMGGVSASFAFLGDIVLAEPNALIGFAGPRVIEQTVRETLPEGFQRAEFLLEKGAIDQIVDRRDMKQRLADLITLLRRQEPVV
>NZ_CP050135.1|WP_038311275.1|441504_443337_+|phosphogluconate-dehydratase
MKSLHPKLAEITQRIIERSKPTREAYLARIRAFKQQGKLERDQLGCSNLAHGYASMPKSIKIEMQKPDVPNLGIITAYNDMVSAHQPFKDFPDWIKDEAQKHGATAQVAGGTPAMCDGITQGYEGMELSLFSRDVIAMSTAVGLSHQMFDGALFLGVCDKIVPGLVIGALSCGHIPAVFTPAGPMESGIGNKEKARTRQLFAEGKVGREALLASEMGSYHSPGTCTFYGTANSNQMMMEFMGLHLPAAAFFNPYTPMREALTRHAAVQLVQDIRSKKAKPIGEMLSEKSLINAMIGLMATGGSTNHTMHLVAMARAAGVILNWDDFDEISNIIPLLIRVYPNGQADVNHFAAAGGLPFVIRELRENGLLHDDVDTVVGHGMQAYTQEPFLDNDKLVWRDATAQSLNDEILRTFDNPFSPNGGLRLMKGNVGRGVIKVSAVKDSHRIIEAPAIVFNDQKEVLTAFERGELDGKDFVCVVRFQGARANGMPELHKLTPPLAILLDRGQKVALVTDGRMSGASGKVPASIHMSPEASMGGGIGKIQTGDLIRFDSVTGELTALVDEKEWAAREIPAADLSKNHYGVGRELFAGFRAQTSSAETGAMSFGGDFA
>NZ_CP050135.1|WP_003791200.1|440288_441266_-|FAD:protein-FMN-transferase
MQTTRRRFIGITAAVSAAALLPTRTWAQAKTEPVVWQGVALGADAELRLYHPNRALAESLIQKSLAEVARLEKIFSVYQDNSQVSRLNRAGSLHAPSADLLAVLNQVQRIHRITQGAFDPTVQVLWQQFAQHFSRQPNSQTAPNVQAALRRVGWKNVRVNNQHIAFTQANMAMTLNGIAQGYITDRITQLLQNEGLTYALVDMGETRHLDTHKQHLQHAKIQNPKGNGTLQNVAIPVQNQALATSSGFGTPFDVAGKFTHLFDPRTGSSAPRYQSVSVLANNAALADALSTAFAVSSESEIQAAIQQTGAKAWLVLLDGSVKMLG
>NZ_CP050135.1|WP_003787426.1|439773_440166_-|PTS-mannose-transporter-subunit-IIA
MIGLLIITHETLGAAYKQLAQHFFANQNLEHIHILNVETTDDHEDIISRAQAILPDINRGNGVLILTDIFGATPCNAAMKMVSPQSAMISGLNAPMLIKAVNYSTQSSQLGDFVELVKQAGINGIMAFTE
>NZ_CP050135.1|WP_003787424.1|439460_439730_-|HPr-family-phosphocarrier-protein
MQTQTVQIINKLGLHARASSKFTQTAAQFQSEVWVSRNGKRVNGKSIMGLMMLAAAQGTEIEIETNGADEQAAMTALCALIADYFGEGE
>NZ_CP050135.1|WP_038311273.1|437721_439458_-|phosphoenolpyruvate--protein-phosphotransferase
MIVLHGYAAGKGIAIGRARLVVRGSSEVPQYHLHEAEIANETARFETAIKATRKQLEQLRSAIPENAPTELGAFISLHLMLLTDVTLSREPVDIIEAQQINAEWALKIQTDHLSQQFDAIDDDYLRQRKQDMLQVVERIQKNLVGQNTEIVFGENLLDDTILIAHDLSPADTVFFKDAKIEGFVTDMGGPTSHTAILGRSLNIPSVIGTGNARQLISENEWVIVDGMTGVLIINPDEIVLAEYRRRLKEFKTRQKALNKLKKTATTTEDGEEIELLANIEHMDDIKALHNIGADGVGLLRTEFQYLNRDSLPTEDELFQTYSEMAKKLKGKPLTIRTVDLGVDKNPRWFGNNGTPNASLNPALGLTGIRLCHAEPVMFRTQMRAILRAAAHGKLRMMFPMIASLSELKQSLVHLETAKRQLTERGETFADVDIGCMIEIPSAALTVSSLLKLVDFVSIGTNDLIQYTLSVDRSDDAVSYLYQPAHPAVLKLLAHIIRTANRMNKGVSVCGEMAGDATYTRLLLGLGLRKFSMNVGDLLSVKDVVLRSHTEDLETDIIKLIRNEDPDKTTALLKKLNEM
>NZ_CP050135.1|WP_003787419.1|436884_437652_-|triose-phosphate-isomerase
MEQNIWQQKWVVGNWKMNGQLHSNNSLVHKLRSLPAADSVCIGISPPTVYLSQVHHAVQIVLNNKIHICAQDVSRFADKGAYTGEVSAEMMKDVGVDIVLIGHSERSLYFNEKNDIQRLKIENVLNVGLIPLLCVGESLKEREDGREKEAVAYQLSVFKGLKTQNFAVAYEPVWAIGTGKVATKEQIADMHQFIYNEILSLCGNDANIRILYGGSVNDKNAAEIFSVPYVDGALVGGASLKYESFTAIINAAQEA
>NZ_CP050135.1|WP_166503184.1|436510_436882_-|preprotein-translocase-subunit-SecG
MEAFKTIIWIINIFSSLSIIILVLMQNGKGADAGAGASFGSGSGSAQGVFGSAGNANFLTRLTGICAAVFFASCLALSYVHSHSGKTGTLDFSDVQQTTTTHPVTGTTTAPASVASPAASSAQ
>NZ_CP050135.1|WP_003791188.1|447553_448531_-|malate-dehydrogenase
MKQPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLDLPQAQKAVQGVMMELQDCAFPLLDGMIASDDPEVAFKDADIAILVGARPRGPGMERADLLQANAQIFTVQGAALNKVASRNVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLRLDHNRAVSQITEKTGKAVRDIEKLCVWGNHSPTMYADYRFATIGGQSVKEMINDQEWNANVFLPTVGKRGAAIIEARGLSSAASAANAAIDHIRDWVLGTNGKWVTMGVPSDGSYGIPAETIFGFPVTCENGEYQIVQGLEMDAFSQECINKTLAELEGEKDGVKDLL
>NZ_CP050135.1|WP_003791186.1|448749_449625_-|ribosome-small-subunit-dependent-GTPase-A
MSSTTAQIIASYGRRYIVRTDQSQTYEASTRSKRTDYACGDWVCIQIINQEQAVIEAVQERQSLLYRQDAWKSKLIAANVSQLLIVLAAVPSPSEALLQRALIAAEAAHIHAIIVLNKSDLPETAIWREKLSFYKTLGYEVIELSALHESSASSLHNVLHGHTNILLGQSGMGKSTLTNALLGEQLARTNDISAALDSGKHTTTHTQLYDLEEQTKLIDSPGLQEFGLHHLQLADLPHYFPDLCHLIGQCRFHNCTHRAEPNCAFKQAAEQGEIRAERLALLQKISNELDH
>NZ_CP050135.1|WP_003791185.1|451590_452841_-|serine-hydroxymethyltransferase
MYSKSVTIAQYDPELAAAIAAEVTRQQDHIELIASENYVSCAVMEAQGSQLTNKYAEGYPNKRYYGGCEHVDVAEQLAIDRAKKLFGAEYVNVQPHSGSQANQAVYASVLKPGDTILGMSLAHGGHLTHGASVNISGKLYNAITYGLDENEVLDYAEVERLALEHKPKMIVAGASAYALEIDWAKFREIADKVGAYLFVDMAHYAGLVAGGEYPNPVPFADFVTTTTHKTLRGPRGGVILCRDNTHEKALNSAIFPSLQGGPLMHVIAAKAVAFKEALEPEFKQYAKQVKINAAAMAEELVKRGLRIISGRTESHVFLVDLRPKNITGKAAEEALGKAHITINKNAIPNDPEKPFVTSGIRVGAAAITTRGFTEADARELANLVADVLENPNDEAVLKQVAEKAKVLCDKNPVYGA
>NZ_CP050135.1|WP_032828178.1|453093_453969_-|RNase-adapter-RapZ
MKIVLISGLSGSGKSVALNLLEDHGFYCVDNLPLALIPELVRHHATSWQSSLHTEKLGISLDIRSRPNTSMANELIASLRQQGHSVQILFLEADQAVLLRRFSETRRSHPLAQESAGSLHDSLNHEREWLLPLRNLAYCLDTTHLTSQQLRQRVSQWLDADHSSLLISIESFGFKYGAAPAADFVFDVRSLPNPYYLPDLRPYNGTQEPIIQYLNQQDLAQEMLNDISQFMQKWLPKMQDESRSYVTIAIGCTGGQHRSVYLTEQLAARLCGQFQVITRHRQMKYSGLNLD
>NZ_CP050135.1|WP_038311280.1|453949_454918_-|HPr-kinase/phosphorylase
MPSISVRKLYQDNQQKLQMAWTAGTAGGDNRISVEADRPALALVGHLNFIHHNQVQVLGVAEVAYLQKLEQSDNPTSLDELFNFPMALVIVANDLPVPQSLRDYCHTHNIPLLTSALESPYLMDVLRIYLQRVLAVSAVKHGVFLDVFEVGVLLTGASGLGKSELALELISRGHSLVADDAVELHRTAPEVLEGRCPTMLRDFLEVRGLGVLNIRHIFGETSIRPKKQLKLIIQLVPADDHYMKTLDRLSIRTETEAILNVKIRSVVLPVAAGRNLAVLVEAAVRNYILQLRGKDSTKEFLERHQAMMNKPDSELNDEDSID
>NZ_CP050135.1|WP_003787459.1|454984_455428_-|PTS-IIA-like-nitrogen-regulatory-protein-PtsN
MKAIGDIIPISHIVLDQQASSKKRLFEQVAQLLHEQAGLPQNEIFDCLIARERLGSTGLGHGVAIPHGRHASVQAACGAFIRLQEAVDFDAPDGKPVSLVCVLLVPEAATSEHLEILSHLAGKFNDKAVRDALLQSQTAEQIQQLLN
>NZ_CP050135.1|WP_164538267.1|455571_458277_-|phosphoenolpyruvate-carboxylase
MQLDLLLTSEKDAPLLADAEFMTASLYAMLENHADEMVVNALKILAKAHDASHVITELLPSLSDEQTENLITAVGMFAQVLNIAEDVHHERRRLAHEHAGSAASDGSLAATIQKFQAQNISSTQLQNVLNNTQVNPVMTAHPTEVQRQATLISHRKIRALLPRREFCRSAEELGDLQHEMDIVLLTLWQTSETRHFKLSVNSEINNGVNIFPMSFFQALPKFYRRMEKQLQAAFPNISVPNLLQIGGWIGGDRDGNPFVTAQTLRDAFVRHADAAFHHYRRELEALYQELPLSIRRTQISDGVLLLSAKSPDTEVSRQEEPYRRAIGLILSRMAGKANALGLKLGCKFGLGEPYANVDEFLRDLKTLQSSLQQNGSGVLASGRLADIIRTVSVCGFHLMPLDLRQHAEKHENVVAELFQHAGLEDYASLSESDKQAVLLRELSSPRPLLNPFVAYSAAACYELDIFRAAHQIKHDFGEDAISQSIISNCEKPNDLLALALILKETGLLKIENGKPVSRINIVPLFETIDALANACPIMETLFALDWYRALVSSRDNVQEIMLGYSDSNKDGGYISSTWGLYQAEIGLVQLFQKHDVRIRLFHGRGGSVGRGGGPSYQAILAQPAGSVAGQIRITEQGEVITSKYGDPSNAARNLETLVAATLEATLLPAMQDPDIALMNALSEQSFAHYRALITRNGFIDYFLQTSPIEQIASLNLGSRPASRKTLARIQDLRAIPWVFSWTQNRLMLPAWYGFGTAVAKLCESDPSSLHKLQDHAQNNPFFRTMLSNMEQVMAKTDLTLAEHYAALSENSADGAAIFATIKDEYQRSHQALLDILQVEELLLDNRALARSLALRIPYLNALGGLQVALLKKLRQDPNNQHVLQMVHQTINGVAQGLRNTG
>NZ_CP050135.1|WP_032828289.1|458538_459762_+|sugar-MFS-transporter
MSSQAPKNNTVALGVLTSLFFMMGFITCMNDILIPHLKGIFNLNYTQAMLIQFCFFTAYALMSIPAGKLVEKIGYKGGVIGGFLIAALGCILFYPAAGSASYPIFLGALFILATGIVLLQVAGNPYVTLLAKPGKESATLTLIQAFNSLATAIAPPIGAALIFVDATASIEERIASVQIPYLGLAGFMILLAVAVALIKLPDARQIAQEETEHNHDGKTSVWQYKHMILGAVGIFCYVGGEVAIGSMMINVLEHVANLDHAKAAGYLSLYWGGAMVGRFAGTFLMSKFQPHKCLAFNASVVVALILLAIVAGGHVAMWSLLAIGLFNSIMFPTIFSLGTKGLGKFTGEASGIICTAIVGGALIPVVQGAFADMPSIGLLPAFFVSALCYCYIVFFALKGHKVDEQQA
>NZ_CP050135.1|WP_032828177.1|459903_461289_+|MFS-transporter
MARKAKIPMLAHEWRASVSLSGVYALRMLGMFLVLPVLALHAHQLAGDGASSLKMVGLAMAAYGLTQAVLQLPLGMLSDKIGRKKVIYLGMTVFAAGSFWAACTLSVESLIMARAVQGAGAVSAAVTALLADLTREEVRTRAMSMIGLTIGLTFSVSLVLSPILTSWFGVEGLFVIMGVLSAASMVLVAWYTPEPQRSRIHQDTQVKANHLGEVLKNSQLLRLDLGIFVLQAGLMAMFTVLPFALRQLGWDKATHWQIYLPATVIGLILMVPAIIVGETRNKLKYVFLLGIILVIAAQAALIWSLSSAWSIGIALVIYFIGFNILEASMPSLVSKIAPSNLKGTAMGVYNTTQSLGVFTGGLLGSRLFDWAGYAGVFGFCCGIGAIWLMLAATAPAPLPVKNVVYAIPDAWKNRLPDLGTALQAASGVQVVSFSDDGETVFIKALQHGFDEDKVKQILIGE
>NZ_CP050135.1|WP_003791169.1|461291_461813_+|single-stranded-DNA-binding-protein
MSLNKVMLIGRLGRDPETRYMPNGDAVCNFSVATSENWTDRNNGQRQERTEWHNITMYRRQAEIAAQYLRKGSQVYLEGKIQSRKYTDKTGAERTAYDIVCDVMRMLDSKNGQQGGSSHVPYDNEYSAAPPPVRQQPAPAAPASEPPVAPQRRESKPVAPVEPVENIDEDIPF

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Identity
NZ_CP050135_1	1.6\|321228\|30\|NZ_CP050135\|CRISPRCasFinder,CRT	321228-321257	30	NZ_CP050135.1	716565-716594	1.0
NZ_CP050135_1	1.7\|321294\|30\|NZ_CP050135\|CRISPRCasFinder,CRT	321294-321323	30	NZ_CP050135.1	357111-357140	1.0
NZ_CP050135_1	1.14\|321230\|30\|NZ_CP050135\|PILER-CR	321230-321259	30	NZ_CP050135.1	716565-716594	1.0
NZ_CP050135_1	1.15\|321296\|30\|NZ_CP050135\|PILER-CR	321296-321325	30	NZ_CP050135.1	357111-357140	1.0

1. spacer 1.6|321228|30|NZ_CP050135|CRISPRCasFinder,CRT matches to position: 716565-716594, mismatch: 0, identity: 1.0

tagtggtgatggcgtatttgattggttcgc	CRISPR spacer
tagtggtgatggcgtatttgattggttcgc	Protospacer
******************************

2. spacer 1.7|321294|30|NZ_CP050135|CRISPRCasFinder,CRT matches to position: 357111-357140, mismatch: 0, identity: 1.0

ctgcaaaatgtcggctgcgttcaaatccag	CRISPR spacer
ctgcaaaatgtcggctgcgttcaaatccag	Protospacer
******************************

3. spacer 1.14|321230|30|NZ_CP050135|PILER-CR matches to position: 716565-716594, mismatch: 0, identity: 1.0

tagtggtgatggcgtatttgattggttcgc	CRISPR spacer
tagtggtgatggcgtatttgattggttcgc	Protospacer
******************************

4. spacer 1.15|321296|30|NZ_CP050135|PILER-CR matches to position: 357111-357140, mismatch: 0, identity: 1.0

ctgcaaaatgtcggctgcgttcaaatccag	CRISPR spacer
ctgcaaaatgtcggctgcgttcaaatccag	Protospacer
******************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP050135_1	1.6\|321228\|30\|NZ_CP050135\|CRISPRCasFinder,CRT	321228-321257	30	NZ_CP045386	Ruegeria sp. THAF33 plasmid pTHAF33_b, complete sequence	186616-186645	6	0.8
NZ_CP050135_1	1.14\|321230\|30\|NZ_CP050135\|PILER-CR	321230-321259	30	NZ_CP045386	Ruegeria sp. THAF33 plasmid pTHAF33_b, complete sequence	186616-186645	6	0.8
NZ_CP050135_1	1.1\|320898\|30\|NZ_CP050135\|CRISPRCasFinder,CRT	320898-320927	30	MK250029	Prevotella phage Lak-C1, complete genome	129226-129255	7	0.767
NZ_CP050135_1	1.1\|320898\|30\|NZ_CP050135\|CRISPRCasFinder,CRT	320898-320927	30	MK250016	Prevotella phage Lak-A1, complete genome	168970-168999	7	0.767
NZ_CP050135_1	1.1\|320898\|30\|NZ_CP050135\|CRISPRCasFinder,CRT	320898-320927	30	MK250019	Prevotella phage Lak-A2, complete genome	92035-92064	7	0.767
NZ_CP050135_1	1.3\|321030\|30\|NZ_CP050135\|CRISPRCasFinder,CRT	321030-321059	30	NZ_AP018205	Leptolyngbya boryana NIES-2135 plasmid plasmid2 DNA, complete genome	511959-511988	7	0.767
NZ_CP050135_1	1.4\|321096\|30\|NZ_CP050135\|CRISPRCasFinder,CRT	321096-321125	30	NZ_LN906635	Lactobacillus reuteri plasmid p53608_1, complete genome, strain ATCC 53608	39098-39127	7	0.767
NZ_CP050135_1	1.5\|321162\|30\|NZ_CP050135\|CRISPRCasFinder,CRT	321162-321191	30	MN855666	Myoviridae sp. isolate 212, complete genome	1719-1748	7	0.767
NZ_CP050135_1	1.9\|320900\|30\|NZ_CP050135\|PILER-CR	320900-320929	30	MK250029	Prevotella phage Lak-C1, complete genome	129226-129255	7	0.767
NZ_CP050135_1	1.9\|320900\|30\|NZ_CP050135\|PILER-CR	320900-320929	30	MK250016	Prevotella phage Lak-A1, complete genome	168970-168999	7	0.767
NZ_CP050135_1	1.9\|320900\|30\|NZ_CP050135\|PILER-CR	320900-320929	30	MK250019	Prevotella phage Lak-A2, complete genome	92035-92064	7	0.767
NZ_CP050135_1	1.11\|321032\|30\|NZ_CP050135\|PILER-CR	321032-321061	30	NZ_AP018205	Leptolyngbya boryana NIES-2135 plasmid plasmid2 DNA, complete genome	511959-511988	7	0.767
NZ_CP050135_1	1.12\|321098\|30\|NZ_CP050135\|PILER-CR	321098-321127	30	NZ_LN906635	Lactobacillus reuteri plasmid p53608_1, complete genome, strain ATCC 53608	39098-39127	7	0.767
NZ_CP050135_1	1.13\|321164\|30\|NZ_CP050135\|PILER-CR	321164-321193	30	MN855666	Myoviridae sp. isolate 212, complete genome	1719-1748	7	0.767

1. spacer 1.6|321228|30|NZ_CP050135|CRISPRCasFinder,CRT matches to NZ_CP045386 (Ruegeria sp. THAF33 plasmid pTHAF33_b, complete sequence) position: , mismatch: 6, identity: 0.8

tagtggt-gatggcgtatttgattggttcgc	CRISPR spacer
-atcgctagaaggcgtatttgattggttggc	Protospacer
 * .* * ** ***************** **

2. spacer 1.14|321230|30|NZ_CP050135|PILER-CR matches to NZ_CP045386 (Ruegeria sp. THAF33 plasmid pTHAF33_b, complete sequence) position: , mismatch: 6, identity: 0.8

tagtggt-gatggcgtatttgattggttcgc	CRISPR spacer
-atcgctagaaggcgtatttgattggttggc	Protospacer
 * .* * ** ***************** **

3. spacer 1.1|320898|30|NZ_CP050135|CRISPRCasFinder,CRT matches to MK250029 (Prevotella phage Lak-C1, complete genome) position: , mismatch: 7, identity: 0.767

ggctcttgtttttggtattccaaaaattcg	CRISPR spacer
gccatttgtttttggtcttccaaagattac	Protospacer
* * .*********** *******.***

4. spacer 1.1|320898|30|NZ_CP050135|CRISPRCasFinder,CRT matches to MK250016 (Prevotella phage Lak-A1, complete genome) position: , mismatch: 7, identity: 0.767

ggctcttgtttttggtattccaaaaattcg	CRISPR spacer
gccatttgtttttggtcttccaaagattac	Protospacer
* * .*********** *******.***

5. spacer 1.1|320898|30|NZ_CP050135|CRISPRCasFinder,CRT matches to MK250019 (Prevotella phage Lak-A2, complete genome) position: , mismatch: 7, identity: 0.767

ggctcttgtttttggtattccaaaaattcg	CRISPR spacer
gccatttgtttttggtcttccaaagattac	Protospacer
* * .*********** *******.***

6. spacer 1.3|321030|30|NZ_CP050135|CRISPRCasFinder,CRT matches to NZ_AP018205 (Leptolyngbya boryana NIES-2135 plasmid plasmid2 DNA, complete genome) position: , mismatch: 7, identity: 0.767

tgcaaacaaaacgatcgcagtcggtaataa	CRISPR spacer
ggcaaacaaaactatcgctgtcgggactgt	Protospacer
 *********** ***** ***** * *.

7. spacer 1.4|321096|30|NZ_CP050135|CRISPRCasFinder,CRT matches to NZ_LN906635 (Lactobacillus reuteri plasmid p53608_1, complete genome, strain ATCC 53608) position: , mismatch: 7, identity: 0.767

caaaatacgatgttatcgtcgtgtttggaa	CRISPR spacer
caaaatacaatgttatcgtcgagaatacat	Protospacer
********.************ *  *. *

8. spacer 1.5|321162|30|NZ_CP050135|CRISPRCasFinder,CRT matches to MN855666 (Myoviridae sp. isolate 212, complete genome) position: , mismatch: 7, identity: 0.767

tcaactggcgcgtgtgctacggcaatctgt	CRISPR spacer
tcaactggcgcgtgtgctgctgcatagtcg	Protospacer
******************.* ***   *

9. spacer 1.9|320900|30|NZ_CP050135|PILER-CR matches to MK250029 (Prevotella phage Lak-C1, complete genome) position: , mismatch: 7, identity: 0.767

ggctcttgtttttggtattccaaaaattcg	CRISPR spacer
gccatttgtttttggtcttccaaagattac	Protospacer
* * .*********** *******.***

10. spacer 1.9|320900|30|NZ_CP050135|PILER-CR matches to MK250016 (Prevotella phage Lak-A1, complete genome) position: , mismatch: 7, identity: 0.767

ggctcttgtttttggtattccaaaaattcg	CRISPR spacer
gccatttgtttttggtcttccaaagattac	Protospacer
* * .*********** *******.***

11. spacer 1.9|320900|30|NZ_CP050135|PILER-CR matches to MK250019 (Prevotella phage Lak-A2, complete genome) position: , mismatch: 7, identity: 0.767

ggctcttgtttttggtattccaaaaattcg	CRISPR spacer
gccatttgtttttggtcttccaaagattac	Protospacer
* * .*********** *******.***

12. spacer 1.11|321032|30|NZ_CP050135|PILER-CR matches to NZ_AP018205 (Leptolyngbya boryana NIES-2135 plasmid plasmid2 DNA, complete genome) position: , mismatch: 7, identity: 0.767

tgcaaacaaaacgatcgcagtcggtaataa	CRISPR spacer
ggcaaacaaaactatcgctgtcgggactgt	Protospacer
 *********** ***** ***** * *.

13. spacer 1.12|321098|30|NZ_CP050135|PILER-CR matches to NZ_LN906635 (Lactobacillus reuteri plasmid p53608_1, complete genome, strain ATCC 53608) position: , mismatch: 7, identity: 0.767

caaaatacgatgttatcgtcgtgtttggaa	CRISPR spacer
caaaatacaatgttatcgtcgagaatacat	Protospacer
********.************ *  *. *

14. spacer 1.13|321164|30|NZ_CP050135|PILER-CR matches to MN855666 (Myoviridae sp. isolate 212, complete genome) position: , mismatch: 7, identity: 0.767

tcaactggcgcgtgtgctacggcaatctgt	CRISPR spacer
tcaactggcgcgtgtgctgctgcatagtcg	Protospacer
******************.* ***   *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

367244 : 390018

Haemophilus_phage(44.44%)

plate,tail,capsid,terminase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_166503326.1\|367244_367718_-	hypothetical protein	A0A0R6PFI9	Moraxella_phage	4.8e-27	48.6
WP_166503171.1\|367720_367882_-	hypothetical protein	NA	NA	NA	NA
WP_003789922.1\|367908_368535_-	DUF4376 domain-containing protein	A0A0R6PGN1	Moraxella_phage	3.6e-38	59.3
WP_003789925.1\|370261_370828_-	YmfQ family protein	F6MIL7	Haemophilus_phage	2.5e-38	47.1
WP_003789928.1\|370824_371877_-\|plate	baseplate J/gp47 family protein	A0A0M3LQN4	Mannheimia_phage	6.8e-98	54.1
WP_003789930.1\|371920_372268_-	hypothetical protein	A0A0M3LQK5	Mannheimia_phage	8.0e-32	58.6
WP_003789932.1\|372374_373016_-\|plate	phage baseplate assembly protein V	A0A0M3LPA3	Mannheimia_phage	2.8e-38	58.3
WP_003789934.1\|373012_374149_-	hypothetical protein	F6MIL3	Haemophilus_phage	3.4e-119	60.1
WP_003789936.1\|374132_375482_-	phage morphogeneis protein	F6MIL2	Haemophilus_phage	2.2e-61	32.8
WP_166503172.1\|375478_377845_-	hypothetical protein	NA	NA	NA	NA
WP_032828146.1\|377909_378065_-	hypothetical protein	NA	NA	NA	NA
WP_166503173.1\|378064_378481_-	hypothetical protein	NA	NA	NA	NA
WP_003789941.1\|378488_378866_-	hypothetical protein	F6MIK8	Haemophilus_phage	5.0e-27	50.0
WP_166503174.1\|378924_380337_-\|tail	phage tail protein	B7SDP8	Haemophilus_phage	4.2e-127	52.4
WP_003789945.1\|380329_380548_-	hypothetical protein	NA	NA	NA	NA
WP_003789947.1\|380540_381182_-	DUF1834 family protein	A0A0M3LQJ7	Mannheimia_phage	6.2e-38	44.0
WP_003789948.1\|381165_381591_-	DUF1320 family protein	NA	NA	NA	NA
WP_003789950.1\|381593_382019_-	hypothetical protein	NA	NA	NA	NA
WP_003789952.1\|382070_382982_-\|tail	tail sheath protein	B7SDP1	Haemophilus_phage	5.3e-99	56.7
WP_166503327.1\|382981_384052_-	hypothetical protein	A0A0M5N0Q6	Ralstonia_phage	1.4e-55	41.1
WP_003789955.1\|384324_384744_-	phage virion morphogenesis protein	B7SDN8	Haemophilus_phage	1.2e-34	51.8
WP_166503175.1\|384877_386206_-\|capsid	minor capsid protein	A0A0M4UTA3	Ralstonia_phage	3.1e-47	34.5
WP_003789960.1\|386186_387764_-	DUF935 domain-containing protein	A0A0M3LRU4	Mannheimia_phage	2.3e-166	57.9
WP_003789962.1\|387840_389475_-\|terminase	phage terminase large subunit	B7SDN0	Haemophilus_phage	5.6e-216	67.5
WP_003789965.1\|389502_390018_-	DUF1804 family protein	L7P7Y5	Pseudomonas_phage	2.6e-42	52.7

DBSCAN-SWA_2

394596 : 402259

Pseudomonas_phage(42.86%)

transposase,integrase

attL 397789:397807|attR 414884:414902

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003789988.1\|394596_395034_-	DUF1018 domain-containing protein	L7P7R1	Pseudomonas_phage	1.9e-17	42.5
WP_166503178.1\|395134_395347_-	hypothetical protein	NA	NA	NA	NA
WP_003789993.1\|395406_395649_-	hypothetical protein	NA	NA	NA	NA
WP_003789995.1\|395658_396195_-	host-nuclease inhibitor protein Gam	L7P7T1	Pseudomonas_phage	1.5e-32	46.8
WP_003789997.1\|396262_396460_-	hypothetical protein	NA	NA	NA	NA
WP_003789999.1\|396459_396783_-	hypothetical protein	NA	NA	NA	NA
WP_003790002.1\|396866_397763_-	AAA family ATPase	A0A2D1GNS0	Pseudomonas_phage	1.3e-49	39.5
397789:397807	attL	NA	NA	NA	NA
WP_166503179.1\|397830_399915_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A0M3LPN5	Mannheimia_phage	1.4e-94	34.6
WP_144005583.1\|399925_400141_-	transcriptional regulator	A0A0C4UQU0	Shigella_phage	1.3e-16	54.5
WP_003790009.1\|400439_401420_+	transcriptional regulator	A0A0C4UQZ2	Shigella_phage	3.0e-07	46.3
WP_166503180.1\|401587_402259_+	hypothetical protein	A0A2N9QVU4	Dishui_lake_phycodnavirus	1.2e-12	29.9
414884:414902	attR	NA	NA	NA	NA

DBSCAN-SWA_3

522845 : 577577

Bacillus_phage(33.33%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003789355.1\|522845_523082_+\|transposase	DDE transposase family protein	NA	NA	NA	NA
WP_164538194.1\|523109_523631_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_003791064.1\|523892_524723_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_038316308.1\|524796_525879_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA
WP_003791060.1\|525954_526593_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA
WP_003787613.1\|526680_526893_-	peptidyl-dipeptidase	NA	NA	NA	NA
WP_164538258.1\|527319_527460_-	entericidin A/B family lipoprotein	NA	NA	NA	NA
WP_164538257.1\|527597_529004_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA
WP_038311328.1\|529192_530242_+	DNA polymerase IV	NA	NA	NA	NA
WP_038311330.1\|530450_532301_-	lipid A export permease/ATP-binding protein MsbA	W8CYL7	Bacillus_phage	5.1e-40	27.0
WP_166503188.1\|532667_534947_-	DNA internalization-related competence protein ComEC/Rec2	Q332C0	Clostridium_botulinum_C_phage	4.4e-25	30.8
WP_003787625.1\|535124_535949_-	kinase/pyrophosphorylase	NA	NA	NA	NA
WP_026036281.1\|536035_536230_-	YbdD/YjiX family protein	NA	NA	NA	NA
WP_003791046.1\|536237_538319_-	carbon starvation protein A	NA	NA	NA	NA
WP_003791044.1\|538473_539388_-	GTP-binding protein	NA	NA	NA	NA
WP_032828286.1\|539424_540099_-	epoxyqueuosine reductase QueH	NA	NA	NA	NA
WP_003787631.1\|540171_540369_-	zinc-finger domain-containing protein	NA	NA	NA	NA
WP_003787633.1\|540665_540878_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_003791040.1\|541055_541841_+	enoyl-ACP reductase FabI	NA	NA	NA	NA
WP_032134180.1\|541918_542728_-	zinc transporter ZupT	NA	NA	NA	NA
WP_032134235.1\|542885_543659_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_003791033.1\|543721_544450_+	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.2e-32	40.4
WP_051350929.1\|544734_545961_-	DUF1295 domain-containing protein	NA	NA	NA	NA
WP_166503189.1\|546034_546676_-\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_003791026.1\|546706_547255_-	hypothetical protein	NA	NA	NA	NA
WP_032828175.1\|547258_547498_-	hypothetical protein	NA	NA	NA	NA
WP_003791020.1\|547561_550183_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	4.2e-80	37.9
WP_164538077.1\|550389_550983_-	hypothetical protein	NA	NA	NA	NA
WP_038311336.1\|551026_552304_-\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_038304095.1\|552306_552975_-	O-methyltransferase	NA	NA	NA	NA
WP_003787650.1\|552993_553182_-	DUF3460 family protein	NA	NA	NA	NA
WP_038311338.1\|553289_554738_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA	NA	NA	NA
WP_003791012.1\|554894_555185_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA	NA	NA	NA
WP_003787655.1\|555372_556410_+	rod shape-determining protein	NA	NA	NA	NA
WP_003791010.1\|556446_557319_+	rod shape-determining protein MreC	NA	NA	NA	NA
WP_003791009.1\|557315_557819_+	rod shape-determining protein MreD	NA	NA	NA	NA
WP_003791006.1\|557823_559875_+	penicillin-binding protein 2	NA	NA	NA	NA
WP_003787663.1\|559871_560993_+	rod shape-determining protein RodA	NA	NA	NA	NA
WP_003791005.1\|561040_561469_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_019389637.1\|561461_561743_+	RnfH family protein	NA	NA	NA	NA
WP_003791003.1\|561756_562338_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_003791001.1\|562442_563699_+	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA	NA	NA	NA
WP_003790998.1\|563664_564306_+	DUF4390 domain-containing protein	NA	NA	NA	NA
WP_003790997.1\|564461_566591_+	PAS domain-containing sensor histidine kinase	W8CYF6	Bacillus_phage	2.7e-05	26.5
WP_003790994.1\|566596_567874_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_038311343.1\|567956_568985_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
WP_003790991.1\|569079_569940_-	DUF808 domain-containing protein	NA	NA	NA	NA
WP_166503190.1\|570143_570812_-	beta-phosphoglucomutase	NA	NA	NA	NA
WP_038311346.1\|570814_573079_-	glycoside hydrolase family 65 protein	NA	NA	NA	NA
WP_166503191.1\|573297_573819_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_003789355.1\|573846_574083_-\|transposase	DDE transposase family protein	NA	NA	NA	NA
WP_003790984.1\|574317_575664_-	SLC45 family MFS transporter	NA	NA	NA	NA
WP_003790982.1\|576018_576801_-	4,5-DOPA dioxygenase extradiol	NA	NA	NA	NA
WP_164538002.1\|576872_577577_-\|transposase	IS1 family transposase	A0A218MNG1	uncultured_virus	1.8e-30	48.8

DBSCAN-SWA_4

643620 : 710248

Paenibacillus_phage(12.5%)

transposase,tRNA,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003792189.1\|643620_643884_-\|transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	4.4e-06	32.9
WP_003792191.1\|643932_644493_+\|transposase	transposase	NA	NA	NA	NA
WP_003792195.1\|644633_646946_-	TonB-dependent receptor	NA	NA	NA	NA
WP_003790867.1\|648653_649985_-	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA
WP_166503197.1\|649998_650829_-	hypothetical protein	NA	NA	NA	NA
WP_166503198.1\|651056_651467_+\|transposase	transposase	NA	NA	NA	NA
WP_019389706.1\|651578_651968_-	adenosylmethionine decarboxylase	A0A1D7SEZ2	Cyanophage	7.9e-12	42.9
WP_166503199.1\|651964_653635_-	DUF4178 domain-containing protein	NA	NA	NA	NA
WP_003787856.1\|653650_653890_-	hypothetical protein	NA	NA	NA	NA
WP_038311549.1\|653955_654324_-	hypothetical protein	NA	NA	NA	NA
WP_003787860.1\|654442_654886_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_003790848.1\|654960_655899_+	hydroxymethylbilane synthase	NA	NA	NA	NA
WP_003790846.1\|656101_657505_+	PepSY domain-containing protein	NA	NA	NA	NA
WP_038308333.1\|663644_663896_-\|transposase	transposase	NA	NA	NA	NA
WP_032133957.1\|663941_664271_-	1,4-dihydroxy-2-naphthoate octaprenyltransferase	NA	NA	NA	NA
WP_038311210.1\|664353_665109_-	hypothetical protein	NA	NA	NA	NA
WP_003790837.1\|665873_666584_-	SCO family protein	NA	NA	NA	NA
WP_003790835.1\|666597_668268_-	bifunctional UDP-sugar hydrolase/5'-nucleotidase	NA	NA	NA	NA
WP_003784990.1\|668288_668978_-	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA
WP_003790833.1\|668974_669793_-	shikimate dehydrogenase	NA	NA	NA	NA
WP_003784993.1\|669932_670493_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	5.3e-33	43.8
WP_003784995.1\|670710_671556_+	class II glutamine amidotransferase	NA	NA	NA	NA
WP_032133954.1\|671599_672316_+\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_166503330.1\|672386_672944_+	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_003784999.1\|672969_673482_+	cyclophilin	A0A1B1IVS0	uncultured_Mediterranean_phage	6.8e-11	33.3
WP_003785000.1\|673562_673811_+	glutaredoxin family protein	NA	NA	NA	NA
WP_050855144.1\|673864_674830_-	signal peptidase I	NA	NA	NA	NA
WP_038320017.1\|674931_675813_-	DMT family transporter	NA	NA	NA	NA
WP_166503200.1\|675994_676855_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_166503331.1\|676915_677290_-	RNA-binding S4 domain-containing protein	NA	NA	NA	NA
WP_038326551.1\|677356_677959_-	TIGR00730 family Rossman fold protein	A0A1D8KU27	Synechococcus_phage	1.2e-19	36.6
WP_166503201.1\|677973_678588_-	hypothetical protein	NA	NA	NA	NA
WP_038311197.1\|678789_680097_-	DUF2868 domain-containing protein	NA	NA	NA	NA
WP_003790814.1\|680102_680756_-	HAD-IA family hydrolase	NA	NA	NA	NA
WP_003790813.1\|681022_682288_+	RsmB/NOP family class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA
WP_038311195.1\|683595_684363_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_166503202.1\|684568_684751_-	hypothetical protein	NA	NA	NA	NA
WP_166503203.1\|685031_685598_-	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA
WP_003790807.1\|685720_686749_-	ribose-phosphate pyrophosphokinase	A0A1V0SHF7	Hokovirus	8.5e-45	35.0
WP_038330060.1\|687136_687991_-	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
WP_038320910.1\|688002_688602_-	outer membrane lipoprotein LolB	NA	NA	NA	NA
WP_003790800.1\|691037_692072_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003790799.1\|692210_693506_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_003786266.1\|693685_694483_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_038311188.1\|694606_696250_-	lactate permease LctP family transporter	NA	NA	NA	NA
WP_003790794.1\|696389_697841_-	iron-sulfur cluster-binding protein	NA	NA	NA	NA
WP_166503204.1\|697837_698536_-	lactate utilization protein C	NA	NA	NA	NA
WP_003786276.1\|698532_699300_-	(Fe-S)-binding protein	NA	NA	NA	NA
WP_003790789.1\|699808_700381_-	hypothetical protein	NA	NA	NA	NA
WP_003790786.1\|700463_701108_-	adenylate kinase	NA	NA	NA	NA
WP_003790784.1\|701480_703952_+	hypothetical protein	NA	NA	NA	NA
WP_164538093.1\|704191_706270_+	LysM peptidoglycan-binding domain-containing protein	A0A0A0RVE6	Bacillus_phage	7.5e-08	36.0
WP_003790780.1\|706354_706915_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_003790778.1\|708314_709595_+\|terminase	terminase	E5FFI8	Burkholderia_phage	6.3e-98	46.8
WP_164538194.1\|709726_710248_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA

DBSCAN-SWA_5

1056476 : 1104784

Moraxella_phage(14.29%)

transposase,tRNA,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038310858.1\|1056476_1057769_+\|tRNA	histidine--tRNA ligase	NA	NA	NA	NA
WP_003790537.1\|1057768_1058365_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_003790539.1\|1058425_1058983_+	Uma2 family endonuclease	NA	NA	NA	NA
WP_003790541.1\|1059194_1060664_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA
WP_003790543.1\|1060721_1064210_-	chromosome segregation protein SMC	NA	NA	NA	NA
WP_003790546.1\|1064298_1064808_-	protein disulfide oxidoreductase	NA	NA	NA	NA
WP_003790548.1\|1064943_1066101_+	glycerate kinase	W6LM47	Streptococcus_phage	1.9e-48	40.3
WP_003790550.1\|1066137_1067262_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA
WP_003787016.1\|1067328_1067688_-	hypothetical protein	NA	NA	NA	NA
WP_003787017.1\|1067787_1069095_+	homoserine dehydrogenase	NA	NA	NA	NA
WP_003787019.1\|1069087_1069567_+	hypothetical protein	NA	NA	NA	NA
WP_003787023.1\|1069623_1070076_+	recombination regulator RecX	NA	NA	NA	NA
WP_003790554.1\|1070321_1070762_+	CZB domain-containing protein	NA	NA	NA	NA
WP_166503233.1\|1071064_1073491_+	endopeptidase La	A0A0R6PGP8	Moraxella_phage	3.8e-213	50.1
WP_003790557.1\|1073680_1073983_+	HU family DNA-binding protein	A3E2K9	Sodalis_phage	1.8e-19	56.2
WP_038303458.1\|1074039_1074645_-	hypothetical protein	NA	NA	NA	NA
WP_003787030.1\|1074723_1075572_-	diaminopimelate epimerase	NA	NA	NA	NA
WP_003787032.1\|1075642_1076053_-	magnesium transporter	NA	NA	NA	NA
WP_003790558.1\|1076094_1077105_-	DNA polymerase III subunit delta	NA	NA	NA	NA
WP_164538153.1\|1077107_1077578_-	hypothetical protein	NA	NA	NA	NA
WP_003790560.1\|1077689_1078172_+\|tRNA	aminoacyl-tRNA deacylase	NA	NA	NA	NA
WP_003790562.1\|1078187_1078733_+	sel1 repeat family protein	NA	NA	NA	NA
WP_003787042.1\|1078793_1079132_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_038306542.1\|1079201_1080254_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_038310871.1\|1080332_1080929_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA
WP_166503234.1\|1080928_1081387_-	dUTP diphosphatase	A0A0A0YRI4	Escherichia_phage	1.9e-44	63.7
WP_043903268.1\|1081405_1081759_-	hypothetical protein	NA	NA	NA	NA
WP_003790567.1\|1081912_1084192_+	NADP-dependent malic enzyme	NA	NA	NA	NA
WP_003790568.1\|1084294_1084981_+	membrane protein	A0A2H4JFM9	uncultured_Caudovirales_phage	2.0e-21	37.7
WP_038310873.1\|1085074_1085731_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_038310875.1\|1085849_1089455_+	bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA	NA	NA	NA	NA
WP_003790571.1\|1089766_1090987_+	aspartate kinase	NA	NA	NA	NA
WP_038310876.1\|1091076_1091697_+	phosphoribosylanthranilate isomerase	NA	NA	NA	NA
WP_003790573.1\|1091732_1092098_-	rhodanese-like domain-containing protein	NA	NA	NA	NA
WP_003790574.1\|1092119_1092455_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_003790575.1\|1092592_1093522_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_166503235.1\|1093522_1093966_+	hypothetical protein	NA	NA	NA	NA
WP_003790578.1\|1094087_1094531_-	phage virion morphogenesis protein	A0A0U5KRJ7	unidentified_phage	4.5e-19	42.5
WP_166503236.1\|1095467_1096838_-	DUF935 family protein	A4JWJ5	Burkholderia_virus	2.9e-109	47.2
WP_166503333.1\|1096781_1097240_+\|tail	phage major tail tube protein	NA	NA	NA	NA
WP_003792208.1\|1097377_1097665_+\|tail	phage tail assembly protein	Q6QIA8	Burkholderia_phage	1.3e-06	41.9
WP_003792207.1\|1097717_1097831_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_164538113.1\|1097833_1098022_-	hypothetical protein	NA	NA	NA	NA
WP_003792203.1\|1098070_1098292_+	hypothetical protein	NA	NA	NA	NA
WP_003792202.1\|1098514_1099381_+\|tail	phage tail tape measure protein	A0A1W6JT50	Escherichia_phage	6.2e-49	62.6
WP_144005598.1\|1099475_1099901_+	hypothetical protein	A0A0R6PGL8	Moraxella_phage	4.7e-26	50.8
WP_164538158.1\|1100042_1100480_+	DNA adenine methylase	A0A2H4JHL6	uncultured_Caudovirales_phage	3.7e-34	50.7
WP_080571764.1\|1100713_1101379_+	KpsF/GutQ family sugar-phosphate isomerase	A0A0A0Q3B9	Pectobacterium_bacteriophage	1.1e-05	60.9
WP_038310639.1\|1101458_1103072_-	phosphoethanolamine transferase	NA	NA	NA	NA
WP_166503334.1\|1103309_1103966_-\|transposase	IS1 family transposase	A0A218MNG1	uncultured_virus	2.9e-22	49.5
WP_166503183.1\|1104028_1104784_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	3.1e-12	35.5

DBSCAN-SWA_6

1494975 : 1558939

Tupanvirus(18.18%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003789545.1\|1494975_1497249_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	4.8e-157	41.0
WP_166503278.1\|1497245_1497545_-\|protease	ATP-dependent Clp protease adapter ClpS	NA	NA	NA	NA
WP_003785524.1\|1497730_1497934_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	2.6e-22	78.8
WP_003789541.1\|1497956_1499030_+\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_003789537.1\|1499033_1500110_+	AI-2E family transporter	NA	NA	NA	NA
WP_032828136.1\|1500174_1500657_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_003785519.1\|1500813_1501077_+	30S ribosomal protein S20	NA	NA	NA	NA
WP_080561224.1\|1501137_1501698_-	RNA pyrophosphohydrolase	NA	NA	NA	NA
WP_003785517.1\|1501788_1501995_+	hypothetical protein	NA	NA	NA	NA
WP_038311131.1\|1501991_1502387_+	VanZ family protein	NA	NA	NA	NA
WP_166503279.1\|1502678_1503791_+	lytic murein transglycosylase B	NA	NA	NA	NA
WP_038311159.1\|1503972_1506195_+	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA
WP_038303881.1\|1506276_1506795_+	hypothetical protein	NA	NA	NA	NA
WP_038329870.1\|1506841_1508272_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA	NA	NA	NA
WP_019389419.1\|1508310_1508742_+	hypothetical protein	NA	NA	NA	NA
WP_003789520.1\|1508973_1509915_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA
WP_003785505.1\|1510068_1510266_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_003785503.1\|1510479_1511658_+	O-succinylhomoserine sulfhydrylase	A0A2I2L687	Orpheovirus	7.5e-05	25.3
WP_003785502.1\|1511749_1511947_+	DUF2788 domain-containing protein	NA	NA	NA	NA
WP_038306943.1\|1512035_1512581_+	septation protein A	NA	NA	NA	NA
WP_003785499.1\|1512580_1512871_+	YciI family protein	NA	NA	NA	NA
WP_003785498.1\|1512867_1513140_+	BolA family transcriptional regulator	NA	NA	NA	NA
WP_038311154.1\|1513155_1514037_+	hypothetical protein	NA	NA	NA	NA
WP_038311152.1\|1514211_1517652_+	exodeoxyribonuclease V subunit gamma	NA	NA	NA	NA
WP_003789511.1\|1517997_1518306_-	hypothetical protein	NA	NA	NA	NA
WP_003789510.1\|1518333_1519269_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_032133847.1\|1519305_1519971_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_003789507.1\|1520577_1522779_-	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_003789505.1\|1522934_1523375_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA
WP_003789503.1\|1523445_1524366_+	aldose 1-epimerase	NA	NA	NA	NA
WP_003789501.1\|1524430_1524772_+	preprotein translocase subunit YajC	NA	NA	NA	NA
WP_166503280.1\|1524857_1526714_+	protein translocase subunit SecD	NA	NA	NA	NA
WP_038311147.1\|1526717_1527659_+	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.0e-41	37.3
WP_164538058.1\|1527713_1529387_-	energy-dependent translational throttle protein EttA	A0A2K9L3Z8	Tupanvirus	1.7e-42	28.9
WP_164538057.1\|1529439_1529892_-	hypothetical protein	NA	NA	NA	NA
WP_003785478.1\|1529936_1530572_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_003789494.1\|1530685_1530985_-	methionine synthase	A0A218MNE0	uncultured_virus	2.6e-15	47.3
WP_003789492.1\|1530983_1531220_+	hypothetical protein	NA	NA	NA	NA
WP_003789490.1\|1531216_1532233_-	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	1.1e-84	48.3
WP_003789478.1\|1536191_1537511_-	MFS transporter	Q6JIH2	Burkholderia_virus	1.8e-39	28.7
WP_003789477.1\|1537676_1538030_-	RidA family protein	NA	NA	NA	NA
WP_080571731.1\|1538107_1538398_-\|transposase	transposase	NA	NA	NA	NA
WP_003789470.1\|1538446_1542496_-	VWA domain-containing protein	NA	NA	NA	NA
WP_164538364.1\|1542744_1542948_-\|transposase	transposase	NA	NA	NA	NA
WP_003789469.1\|1543015_1544779_-	ABC transporter ATP-binding protein/permease	G3M9Y6	Bacillus_virus	4.0e-10	33.1
WP_003789468.1\|1544888_1545752_-	DegV family protein	NA	NA	NA	NA
WP_164538002.1\|1546512_1547217_-\|transposase	IS1 family transposase	A0A218MNG1	uncultured_virus	1.8e-30	48.8
WP_003789461.1\|1547311_1547617_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003789459.1\|1547856_1548525_+	DnaA regulatory inactivator Hda	NA	NA	NA	NA
WP_003789457.1\|1548521_1549190_+	HAD family hydrolase	NA	NA	NA	NA
WP_003789455.1\|1549213_1550047_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA
WP_032828133.1\|1553552_1554323_+	hypothetical protein	NA	NA	NA	NA
WP_166503281.1\|1556626_1557799_+	type III restriction endonuclease subunit R	A0A2K5B256	Erysipelothrix_phage	2.2e-12	60.9
WP_003789438.1\|1557819_1558044_-	MmcQ/YjbR family DNA-binding protein	NA	NA	NA	NA
WP_166503282.1\|1558297_1558939_+\|transposase	IS1595 family transposase	NA	NA	NA	NA

DBSCAN-SWA_7

1704288 : 1712450

Brevibacillus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003789144.1\|1704288_1705173_-	site-specific tyrosine recombinase XerD	A0A0K2CP59	Brevibacillus_phage	2.5e-21	26.5
WP_003789143.1\|1705387_1706395_-	ornithine carbamoyltransferase	NA	NA	NA	NA
WP_003789141.1\|1706615_1707497_+	patatin-like phospholipase family protein	A0A1V0SKV5	Klosneuvirus	2.1e-07	28.2
WP_003787243.1\|1707559_1708525_+	PhoH family protein	H6X2N1	Pseudomonas_phage	1.4e-46	47.6
WP_003789136.1\|1708940_1709270_+	YnfA family protein	A0A218MNG8	uncultured_virus	1.8e-20	48.0
WP_019389768.1\|1709426_1710899_+	S41 family peptidase	A0A0R6PIZ1	Moraxella_phage	3.2e-21	27.7
WP_032133158.1\|1711079_1712450_-	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	3.5e-54	34.0

DBSCAN-SWA_8

1875255 : 1919119

uncultured_virus(23.08%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_164538003.1\|1875255_1876665_-\|tRNA	cysteine--tRNA ligase	A0A0G2Y344	Acanthamoeba_polyphaga_mimivirus	3.0e-48	32.7
WP_164538002.1\|1877021_1877726_+\|transposase	IS1 family transposase	A0A218MNG1	uncultured_virus	1.8e-30	48.8
WP_032828194.1\|1878140_1879433_-	TolC family protein	NA	NA	NA	NA
WP_164538001.1\|1879554_1882425_-	RTX family hemolysin	NA	NA	NA	NA
WP_026036190.1\|1882522_1883026_-	toxin-activating lysine-acyltransferase	NA	NA	NA	NA
WP_166503306.1\|1883125_1883830_+\|transposase	IS1 family transposase	A0A218MNG1	uncultured_virus	2.6e-29	48.0
WP_038310331.1\|1883882_1886273_-	DNA helicase RecQ	A0A2K9L3P7	Tupanvirus	1.2e-78	36.0
WP_038329518.1\|1886661_1887852_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
WP_166503307.1\|1887873_1888572_-	DNA repair protein	NA	NA	NA	NA
WP_003791818.1\|1888792_1890583_-	aminopeptidase P family protein	A0A0P0I8D7	Acinetobacter_phage	7.8e-163	48.6
WP_003791819.1\|1890702_1891518_+	symmetrical bis(5'-nucleosyl)-tetraphosphatase	NA	NA	NA	NA
WP_003791822.1\|1891765_1891981_-	hypothetical protein	NA	NA	NA	NA
WP_003788428.1\|1892127_1892310_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003791824.1\|1892622_1893564_-	D-2-hydroxyacid dehydrogenase	M1I636	Acanthocystis_turfacea_Chlorella_virus	2.2e-31	34.7
WP_003791828.1\|1893677_1894004_+	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_003791830.1\|1894089_1895196_-	DNA polymerase III subunit beta	R9TRR6	Rhizobium_phage	3.6e-49	35.9
WP_032828308.1\|1895215_1896796_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA
WP_003791835.1\|1897002_1897851_+	SPFH domain-containing protein	NA	NA	NA	NA
WP_002214728.1\|1898001_1898136_+	50S ribosomal protein L34	NA	NA	NA	NA
WP_003791837.1\|1898139_1898481_+	ribonuclease P protein component	NA	NA	NA	NA
WP_003791838.1\|1898548_1898758_+	membrane protein insertion efficiency factor YidD	NA	NA	NA	NA
WP_003791839.1\|1898779_1900450_+	membrane protein insertase YidC	NA	NA	NA	NA
WP_003791841.1\|1900626_1900839_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA
WP_003791843.1\|1900983_1901622_-	MBL fold metallo-hydrolase	A0A1X9I5D3	Streptococcus_phage	1.7e-19	30.9
WP_038328927.1\|1901707_1903231_-	fumarate hydratase	NA	NA	NA	NA
WP_164538352.1\|1903429_1904431_-	ADP-glyceromanno-heptose 6-epimerase	E3SL51	Synechococcus_phage	2.5e-25	32.4
WP_164538351.1\|1904459_1904819_-	MmcQ family protein	NA	NA	NA	NA
WP_003791849.1\|1904821_1905775_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	A0A2H4N7X4	Lake_Baikal_phage	5.3e-09	24.9
WP_003791851.1\|1905813_1906521_-	SIMPL domain-containing protein	NA	NA	NA	NA
WP_003791853.1\|1906610_1907411_-	inositol monophosphatase	NA	NA	NA	NA
WP_003788469.1\|1907566_1908469_+	EamA family transporter RarD	NA	NA	NA	NA
WP_144005588.1\|1908620_1909211_-	hypothetical protein	NA	NA	NA	NA
WP_003791860.1\|1909651_1910644_-	biotin synthase BioB	NA	NA	NA	NA
WP_003788473.1\|1910702_1911560_-	hypothetical protein	NA	NA	NA	NA
WP_003789097.1\|1911692_1912043_-\|transposase	transposase	NA	NA	NA	NA
WP_003792078.1\|1912257_1912560_-\|transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	6.6e-06	32.9
WP_166503308.1\|1912608_1913250_+\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_164538387.1\|1916630_1917323_-	site-specific DNA-methyltransferase	A0A1B0XVP8	Campylobacter_phage	1.6e-31	64.2
WP_164538388.1\|1918197_1918638_-	hypothetical protein	NA	NA	NA	NA
WP_003791883.1\|1918747_1919119_+\|transposase	IS1 transposase	A0A218MNG1	uncultured_virus	8.1e-14	48.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP050135

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection