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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP050154 Brevibacterium sp. o2 chromosome, complete genome 6 crisprs csa3,WYL,RT,DEDDh,DinG,cas4,cas3 0 4 0 0

Results visualization

1. NZ_CP050154
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP050154_1 192348-192429 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP050154_2 473976-474202 Orphan NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP050154_3 631252-631339 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP050154_4 2967523-2967688 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP050154_5 3124051-3124198 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP050154_6 4204336-4204426 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP050154_2 2.2|474050|25|NZ_CP050154|CRISPRCasFinder 474050-474074 25 AP018399 Xanthomonas phage XacN1 DNA, complete genome 310895-310919 3 0.88
NZ_CP050154_2 2.2|474050|25|NZ_CP050154|CRISPRCasFinder 474050-474074 25 NZ_CP017244 Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence 90699-90723 3 0.88
NZ_CP050154_2 2.2|474050|25|NZ_CP050154|CRISPRCasFinder 474050-474074 25 MH617016 Phage sp. isolate ctda411, complete genome 4495-4519 3 0.88
NZ_CP050154_2 2.2|474050|25|NZ_CP050154|CRISPRCasFinder 474050-474074 25 NC_029075 Achromobacter phage JWF, complete genome 13059-13083 3 0.88
NZ_CP050154_2 2.2|474050|25|NZ_CP050154|CRISPRCasFinder 474050-474074 25 KT870145 Roseobacter phage DSS3P8, complete genome 65769-65793 4 0.84
NZ_CP050154_2 2.2|474050|25|NZ_CP050154|CRISPRCasFinder 474050-474074 25 MH015255 Ruegeria phage vB_RpoS-V10, complete genome 65817-65841 4 0.84
NZ_CP050154_2 2.1|473999|28|NZ_CP050154|CRISPRCasFinder 473999-474026 28 NC_012811 Methylorubrum extorquens AM1 megaplasmid, complete sequence 1138013-1138040 5 0.821
NZ_CP050154_2 2.1|473999|28|NZ_CP050154|CRISPRCasFinder 473999-474026 28 MT210154 Xanthomonas phage PPDBI, complete genome 9008-9035 5 0.821
NZ_CP050154_2 2.1|473999|28|NZ_CP050154|CRISPRCasFinder 473999-474026 28 MT119766 Xanthomonas phage PBR31, complete genome 9008-9035 5 0.821
NZ_CP050154_2 2.1|473999|28|NZ_CP050154|CRISPRCasFinder 473999-474026 28 MT110073 Stenotrophomonas phage vB_SmaS_DLP_3, complete genome 32364-32391 5 0.821
NZ_CP050154_1 1.1|192374|30|NZ_CP050154|CRISPRCasFinder 192374-192403 30 NC_048782 Rhodococcus phage Sleepyhead, complete genome 37045-37074 7 0.767
NZ_CP050154_1 1.1|192374|30|NZ_CP050154|CRISPRCasFinder 192374-192403 30 NZ_CP011518 Pandoraea oxalativorans strain DSM 23570 plasmid pPO70-1, complete sequence 169728-169757 7 0.767
NZ_CP050154_1 1.1|192374|30|NZ_CP050154|CRISPRCasFinder 192374-192403 30 MK937607 Gordonia phage Zipp, complete genome 13876-13905 8 0.733
NZ_CP050154_1 1.1|192374|30|NZ_CP050154|CRISPRCasFinder 192374-192403 30 MK937611 Gordonia phage Verity, complete genome 13731-13760 8 0.733
NZ_CP050154_2 2.3|474098|37|NZ_CP050154|CRISPRCasFinder 474098-474134 37 MK033137 UNVERIFIED: Pseudomonas phage UNO-SLW1, complete genome 10935-10971 8 0.784

1. spacer 2.2|474050|25|NZ_CP050154|CRISPRCasFinder matches to AP018399 (Xanthomonas phage XacN1 DNA, complete genome) position: , mismatch: 3, identity: 0.88

ttccttggccttcttttcagcctct	CRISPR spacer
ttccttggccttcttttcagcagcc	Protospacer
*********************  *.

2. spacer 2.2|474050|25|NZ_CP050154|CRISPRCasFinder matches to NZ_CP017244 (Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence) position: , mismatch: 3, identity: 0.88

ttccttggccttcttttcagcctct	CRISPR spacer
tatcttggcattcttttcagcctct	Protospacer
* .****** ***************

3. spacer 2.2|474050|25|NZ_CP050154|CRISPRCasFinder matches to MH617016 (Phage sp. isolate ctda411, complete genome) position: , mismatch: 3, identity: 0.88

ttccttggccttcttttcagcctct	CRISPR spacer
tgccttggctttcttttccgcctct	Protospacer
* *******.******** ******

4. spacer 2.2|474050|25|NZ_CP050154|CRISPRCasFinder matches to NC_029075 (Achromobacter phage JWF, complete genome) position: , mismatch: 3, identity: 0.88

ttccttggccttcttttcagcctct	CRISPR spacer
ttccttggcctgcttctcagcctgt	Protospacer
*********** ***.******* *

5. spacer 2.2|474050|25|NZ_CP050154|CRISPRCasFinder matches to KT870145 (Roseobacter phage DSS3P8, complete genome) position: , mismatch: 4, identity: 0.84

ttccttggccttcttttcagcctct	CRISPR spacer
ttccttcgccttcttttccgcctgc	Protospacer
****** *********** **** .

6. spacer 2.2|474050|25|NZ_CP050154|CRISPRCasFinder matches to MH015255 (Ruegeria phage vB_RpoS-V10, complete genome) position: , mismatch: 4, identity: 0.84

ttccttggccttcttttcagcctct	CRISPR spacer
ttccttcgccttcttttccgcctgc	Protospacer
****** *********** **** .

7. spacer 2.1|473999|28|NZ_CP050154|CRISPRCasFinder matches to NC_012811 (Methylorubrum extorquens AM1 megaplasmid, complete sequence) position: , mismatch: 5, identity: 0.821

cttgtccgccttcttcttgtctgcggcg	CRISPR spacer
caggcgcgccttcttcttgtcagcggcg	Protospacer
*  *. *************** ******

8. spacer 2.1|473999|28|NZ_CP050154|CRISPRCasFinder matches to MT210154 (Xanthomonas phage PPDBI, complete genome) position: , mismatch: 5, identity: 0.821

cttgtccgccttcttcttgtctgcggcg	CRISPR spacer
gatttcggccttcttcttgtctgcgccg	Protospacer
  * ** ****************** **

9. spacer 2.1|473999|28|NZ_CP050154|CRISPRCasFinder matches to MT119766 (Xanthomonas phage PBR31, complete genome) position: , mismatch: 5, identity: 0.821

cttgtccgccttcttcttgtctgcggcg	CRISPR spacer
gatttcggccttcttcttgtctgcgccg	Protospacer
  * ** ****************** **

10. spacer 2.1|473999|28|NZ_CP050154|CRISPRCasFinder matches to MT110073 (Stenotrophomonas phage vB_SmaS_DLP_3, complete genome) position: , mismatch: 5, identity: 0.821

cttgtccgccttcttcttgtctgcggcg	CRISPR spacer
gtcggccgccttcttcttgtcagctgcg	Protospacer
 *.* **************** ** ***

11. spacer 1.1|192374|30|NZ_CP050154|CRISPRCasFinder matches to NC_048782 (Rhodococcus phage Sleepyhead, complete genome) position: , mismatch: 7, identity: 0.767

tggaaccggaactcgacgacgcaccggagg	CRISPR spacer
cgacgccggaactcgaaggcgcaccggaga	Protospacer
.*. .*********** *.**********.

12. spacer 1.1|192374|30|NZ_CP050154|CRISPRCasFinder matches to NZ_CP011518 (Pandoraea oxalativorans strain DSM 23570 plasmid pPO70-1, complete sequence) position: , mismatch: 7, identity: 0.767

tggaaccggaactcgacgacgcaccggagg	CRISPR spacer
aggcgccggaactcgacgaggcgccggaac	Protospacer
 ** .************** **.*****. 

13. spacer 1.1|192374|30|NZ_CP050154|CRISPRCasFinder matches to MK937607 (Gordonia phage Zipp, complete genome) position: , mismatch: 8, identity: 0.733

tggaaccggaactcgacgacgcaccggagg	CRISPR spacer
tcgacccggatctcgacgacgcaccaatcc	Protospacer
* ** ***** **************..   

14. spacer 1.1|192374|30|NZ_CP050154|CRISPRCasFinder matches to MK937611 (Gordonia phage Verity, complete genome) position: , mismatch: 8, identity: 0.733

tggaaccggaactcgacgacgcaccggagg	CRISPR spacer
tcgacccggatctcgacgacgcaccaatcc	Protospacer
* ** ***** **************..   

15. spacer 2.3|474098|37|NZ_CP050154|CRISPRCasFinder matches to MK033137 (UNVERIFIED: Pseudomonas phage UNO-SLW1, complete genome) position: , mismatch: 8, identity: 0.784

ctcggcctcagccttctcagctgcggccttttcggcc	CRISPR spacer
ttcgcggccagccttctcagatgcggccttttcagca	Protospacer
.***   .************ ************.** 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage