CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP050172	Serratia fonticola strain CPSE11 plasmid plas1, complete sequence	0 crisprs	NA	0	0	1	0
NZ_CP050171	Serratia fonticola strain CPSE11 chromosome, complete genome	2 crisprs	DEDDh,cas3,csa3,RT,DinG,WYL	0	0	9	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP050171_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP050171_1

523248-523370

Orphan

Consensus_repeat	Method
TTTACTTCCAAACGAGCAGGGGCTATCAGCTCCCTCTCCCTGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP050171_1

>merge|NZ_CP050171|1|523248-523370|CRISPRCasFinder
TTTACTTCCAAACGAGCAGGGGCTATCAGCTCCCTCTCCCTGTGTGGGAGGGAACGAACGAGTTTGCTGAGATTATCACTTTACTTCCAAACGAGCAGGGGCTATCAGCTCCCTCTCCCTGTG

>NZ_CP050171|1|1|523248-523370|CRISPRCasFinder
TTTACTTCCAAACGAGCAGGGGCTATCAGCTCCCTCTCCCTGTG	TGGGAGGGAACGAACGAGTTTGCTGAGATTATCAC
TTTACTTCCAAACGAGCAGGGGCTATCAGCTCCCTCTCCCTGTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP050171.1\|WP_166732870.1\|520111_520552_+\|hydroxyphenylacetyl-CoA-thioesterase-PaaI	unknown	unknown	gnl\|CDD\|131339
NZ_CP050171.1\|WP_039996003.1\|514632_515394_+\|phenylacetate-CoA-oxygenase-subunit-PaaC	unknown	unknown	gnl\|CDD\|368300
NZ_CP050171.1\|WP_166732872.1\|521773_523081_+\|phenylacetate--CoA-ligase	unknown	unknown	gnl\|CDD\|131210
NZ_CP050171.1\|WP_166735060.1\|515402_515900_+\|phenylacetate-CoA-oxygenase-subunit-PaaJ	unknown	unknown	gnl\|CDD\|131214
NZ_CP050171.1\|WP_166732874.1\|524404_525001_+\|phenylacetic-acid-degradation-protein-PaaY	unknown	unknown	gnl\|CDD\|131340
NZ_CP050171.1\|WP_166735061.1\|518582_520112_+\|3-hydroxyacyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|236211
NZ_CP050171.1\|WP_166732871.1\|520548_521754_+\|3-oxoadipyl-CoA-thiolase	unknown	unknown	gnl\|CDD\|181624
NZ_CP050171.1\|WP_166732875.1\|525030_526434_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|224038
NZ_CP050171.1\|WP_166732868.1\|516982_517756_+\|2,3-dehydroadipyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|182026
NZ_CP050171.1\|WP_166732867.1\|515914_516973_+\|phenylacetate-CoA-oxygenase/reductase-subunit-PaaK	unknown	unknown	gnl\|CDD\|131215
NZ_CP050171.1\|WP_166732876.1\|528178_528994_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223730
NZ_CP050171.1\|WP_166732878.1\|530225_530852_+\|glutathione-S-transferase	unknown	unknown	gnl\|CDD\|198315
NZ_CP050171.1\|WP_166732869.1\|517759_518551_+\|2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA-isomerase	unknown	unknown	gnl\|CDD\|236163
NZ_CP050171.1\|WP_094983086.1\|530853_531777_+\|pyridoxamine-5'-phosphate-oxidase	unknown	unknown	gnl\|CDD\|274926
NZ_CP050171.1\|WP_166732877.1\|529218_530124_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176160
NZ_CP050171.1\|WP_021180891.1\|514335_514623_+\|1,2-phenylacetyl-CoA-epoxidase-subunit-B	unknown	unknown	gnl\|CDD\|237504
NZ_CP050171.1\|WP_021180872.1\|531951_532176_+\|YdcH-family-protein	unknown	unknown	gnl\|CDD\|183127
NZ_CP050171.1\|WP_115158106.1\|526449_527634_-\|aspartate/tyrosine/aromatic-aminotransferase	unknown	unknown	gnl\|CDD\|181731
NZ_CP050171.1\|WP_166732873.1\|523450_524392_+\|phenylacetic-acid-degradation-operon-negative-regulatory-protein-PaaX	unknown	unknown	gnl\|CDD\|274064
NZ_CP050171.1\|WP_071680930.1\|527823_528195_-\|RidA-family-protein	unknown	unknown	gnl\|CDD\|100004

Protein	Function_ID	Function_description	E-value
NZ_CP050171.1\|WP_166732870.1\|520111_520552_+\|hydroxyphenylacetyl-CoA-thioesterase-PaaI	gnl\|CDD\|131339	TIGR02286, Acyl-coenzyme_A_thioesterase_PaaI, phenylacetic acid degradation protein PaaD. This member of the domain family TIGR00369 (which is, in turn, a member of the pfam03061 thioesterase superfamily) is nearly always found adjacent to other genes of the phenylacetic acid degradation pathway. Its function is currently unknown, but a role as a thioesterase is not inconsistent with the proposed overall pathway. Sequences scoring between trusted and noise include those from archaea and other species not known to catabolize phenylacetic acid and which are not adjacent to other genes potentially involved with such a pathway.	1.70576e-49
NZ_CP050171.1\|WP_039996003.1\|514632_515394_+\|phenylacetate-CoA-oxygenase-subunit-PaaC	gnl\|CDD\|368300	pfam05138, PaaA_PaaC, Phenylacetic acid catabolic protein. This family includes proteins such as PaaA and PaaC that are part of a catabolic pathway of phenylacetic acid. These proteins may form part of a dioxygenase complex.	4.71694e-112
NZ_CP050171.1\|WP_166732872.1\|521773_523081_+\|phenylacetate--CoA-ligase	gnl\|CDD\|131210	TIGR02155, Phenylacetate-coenzyme_A_ligase, phenylacetate-CoA ligase. Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. [Energy metabolism, Other].	0
NZ_CP050171.1\|WP_166735060.1\|515402_515900_+\|phenylacetate-CoA-oxygenase-subunit-PaaJ	gnl\|CDD\|131214	TIGR02159, Putative_12-phenylacetyl-CoA_epoxidase_subunit_D, phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA. [Energy metabolism, Other].	6.12818e-67
NZ_CP050171.1\|WP_166732874.1\|524404_525001_+\|phenylacetic-acid-degradation-protein-PaaY	gnl\|CDD\|131340	TIGR02287, Phenylacetic_acid_degradation_protein_PaaY, phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator. [Energy metabolism, Other].	2.30371e-111
NZ_CP050171.1\|WP_166735061.1\|518582_520112_+\|3-hydroxyacyl-CoA-dehydrogenase	gnl\|CDD\|236211	PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogenase; Validated.	0
NZ_CP050171.1\|WP_166732871.1\|520548_521754_+\|3-oxoadipyl-CoA-thiolase	gnl\|CDD\|181624	PRK09050, PRK09050, beta-ketoadipyl CoA thiolase; Validated.	0
NZ_CP050171.1\|WP_166732875.1\|525030_526434_-\|amino-acid-permease	gnl\|CDD\|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	2.91338e-151
NZ_CP050171.1\|WP_166732868.1\|516982_517756_+\|2,3-dehydroadipyl-CoA-hydratase	gnl\|CDD\|182026	PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; Provisional.	6.59819e-138
NZ_CP050171.1\|WP_166732867.1\|515914_516973_+\|phenylacetate-CoA-oxygenase/reductase-subunit-PaaK	gnl\|CDD\|131215	TIGR02160, 12-phenylacetyl-CoA_epoxidase_subunit_E, phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA. [Energy metabolism, Other].	3.41356e-171
NZ_CP050171.1\|WP_166732876.1\|528178_528994_-\|alpha/beta-hydrolase	gnl\|CDD\|223730	COG0657, Aes, Esterase/lipase [Lipid metabolism].	1.32068e-14
NZ_CP050171.1\|WP_166732878.1\|530225_530852_+\|glutathione-S-transferase	gnl\|CDD\|198315	cd03206, GST_C_7, C-terminal, alpha helical domain of an unknown subfamily 7 of Glutathione S-transferases. Glutathione S-transferase (GST) C-terminal domain family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.	1.72069e-47
NZ_CP050171.1\|WP_166732869.1\|517759_518551_+\|2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA-isomerase	gnl\|CDD\|236163	PRK08140, PRK08140, enoyl-CoA hydratase; Provisional.	3.81112e-169
NZ_CP050171.1\|WP_094983086.1\|530853_531777_+\|pyridoxamine-5'-phosphate-oxidase	gnl\|CDD\|274926	TIGR04025, hypothetical_protein, PPOX class probable FMN-dependent enzyme, DR_2398 family. Members of the PPOX family (see pfam01243) may contain either FMN or F420 as cofactor. This subfamily consists of proteins mostly from species that lack the capability to synthesize F420, and therefore most likely all bind FMN.	6.03747e-21
NZ_CP050171.1\|WP_166732877.1\|529218_530124_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176160	cd08471, PBP2_CrgA_like_2, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 2. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.73801e-90
NZ_CP050171.1\|WP_021180891.1\|514335_514623_+\|1,2-phenylacetyl-CoA-epoxidase-subunit-B	gnl\|CDD\|237504	PRK13781, paaB, phenylacetate-CoA oxygenase subunit PaaB; Provisional.	2.08945e-63
NZ_CP050171.1\|WP_021180872.1\|531951_532176_+\|YdcH-family-protein	gnl\|CDD\|183127	PRK11415, PRK11415, hypothetical protein; Provisional.	8.58672e-30
NZ_CP050171.1\|WP_115158106.1\|526449_527634_-\|aspartate/tyrosine/aromatic-aminotransferase	gnl\|CDD\|181731	PRK09257, PRK09257, aromatic amino acid transaminase.	0
NZ_CP050171.1\|WP_166732873.1\|523450_524392_+\|phenylacetic-acid-degradation-operon-negative-regulatory-protein-PaaX	gnl\|CDD\|274064	TIGR02277, Transcriptional_repressor_PaaX, phenylacetic acid degradation operon negative regulatory protein PaaX. This transcriptional regulator is always found in association with operons believed to be involved in the degradation of phenylacetic acid. The gene product has been shown to bind to the promoter sites and repress their transcription. [Regulatory functions, DNA interactions].	1.39379e-102
NZ_CP050171.1\|WP_071680930.1\|527823_528195_-\|RidA-family-protein	gnl\|CDD\|100004	cd00448, YjgF_YER057c_UK114_family, YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.	2.92802e-27

>NZ_CP050171.1|WP_166732872.1|521773_523081_+|phenylacetate--CoA-ligase
MTTNPRPIDAIEFASRDEIEALQLERLQWTLHHAYNNVPMYQRKFDQAGVHPSDLKQLSDLALFPYTTKQDLRDNYPFDTFAVPMEQVVRIHASSGTTGRPTVVGYTQRDIDNWADIVARCLRSAGATAKDKIHVAYGYGLFTGGLGAHYGAERLGATVIPMSGGQTEKQVQLILDFKPDVIMVTPSYCLTLIDELERKMGGDARNCSLRLGVFGAEPWTESLRHEIESRMGIKALDIYGLSEVMGPGVAMECAESGGGPTIWEDHFMPEIINPETGAIQTDGEHGELVFTTLTKEALPVIRYRTRDLTHLMPGDARNMRRMGKITGRSDDMLIIRGVNVFPSQVEEQIMQFEHLSPHYQLQVSRAGHLDTLAVRVELKESALTLNHQQRCDICHQLRHHIKSIVGVSTDVSIANCGDIPRSEGKAQRVIDLRPR
>NZ_CP050171.1|WP_166732871.1|520548_521754_+|3-oxoadipyl-CoA-thiolase
MNHAFICDGVRTPIGRYGGALANVRADDLAALPLRALLERHPNVDWSRVDDVILGCANQAGEDNRNLARMAALLAGLPQNVSGTTINRLCGSGLDALAMAARSIKAGEANLVLAGGAESMTRAPLVMGKADSAFSRQAQLFDTTIGWRFVNPLMHEAFGTDSMPETAENVAAQFGISRADQDAFALRSQQRTALAQQRGILAQEIIPVSLSGKKGAITQFSEDEHPRAETTLEQLQKLKTPFRQPGCITAGNASGVNDGAAALIVASEAMALQQGLTPRARIVATATCGVEPRLMGIGPLPATRKVLEIAGLSLAQMDVIELNEAFAAQALAVLRQLGLPDDAERVNPNGGAIALGHPLGMSGARLALAALFELERRAGRYALCTMCIGVGQGIAMIIERV
>NZ_CP050171.1|WP_166732870.1|520111_520552_+|hydroxyphenylacetyl-CoA-thioesterase-PaaI
MNANTPRALAQRCAEQMFSQDTCAQAMDMRIDAVDAGMAKVSMTVGPQMLNGHQTCHGGQLFSLADTAFAYACNSQGLAAVASGCTIDFIRPALAGDRLTACAEVRHQGKTAGLYDVEIVNQLGKTVAWFRGRAHRLGHSILGEQP
>NZ_CP050171.1|WP_166735061.1|518582_520112_+|3-hydroxyacyl-CoA-dehydrogenase
MAINAIATSATVAVIGAGTMGIGIAQVAAAAGHQVKLFDIALPAASRALEQLEQRLRKRVEAGKADAHSTETLLGHIQLTGSLSDLADCSLVIEAVAEKLTIKQSLFRDLEAICSTDTLFASNTSSLSITAIASALQHPQRMAGLHFFNPAPLMKLVEIVGGLETSPETLSCLQVLAQHWGKHSVVCRSTPGFIVNRVARPFYGETLRALEEQIADPATLDAVLRDAGGFAMGPLQLTDLIGQDVNYAVTESVYHAFYQDSRFTPSLVQQELVAAGHLGRKSGRGFYRYGSEQAVPSATFASAVTADLPHSVTLHGDWSAIGEFAQLLTGNAAAIKHSGQTSPFARLDEVTFMLTNGKTASQVAEEIGSPVVLFDLSVNYQHAPIIAISSAEQNAVPHTAKVICLLQSLGKQVIHLPDYPGLLVMRTVAMLANEALDVVNKGVANAADTDDAMRFGVNYPQGPLAWGSKLGWQQILTTLENLQRYYAEPRYRPMPLLRRYAAHYSGAKC
>NZ_CP050171.1|WP_166732869.1|517759_518551_+|2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA-isomerase
MENAFILSHIEAGVLTITLNRPDRLNSFNDEMHHQLSEALTVAERDDSVRCVLLTGAGRGFCAGQDLNDRNVSVDQAPPDLGLSVERFYNPLIRRLSALPKPIVCAVNGVAAGAGAALAMACDIVVAADNASFIQSFCKLGLVPDSGGSWYLPRLAGHARAMGMALLGDKISAQQALEWGMIWQVVAAAELADHTQSMAKQLATQPTYGLGLIKKAMYSSASNTLDQQLDLERDLQRLGGRSADYREGVSAFFAKRPPNFSGK
>NZ_CP050171.1|WP_166732868.1|516982_517756_+|2,3-dehydroadipyl-CoA-hydratase
METPWILREQQQRVVTLTLHRPDARNALSTTSLEQLVYQLEQADSDTDVGAVVIAGAARFFAAGADLRELQQQDVAATQLDHRPLLWQRLAQFSKPLLAAVNGYALGAGCELALACDITICGESARFGLPEITLGLMPGAGGTQRLIRSVGKSRAYQMVLTGEAIDARCALQAGLVSEVCVDALTLERTQQLAQRISQQAPLALRAAKQALKQAQETGLSQGLQMERQQFVTLAATEDRREGIAAFFEKRTPNYQGR
>NZ_CP050171.1|WP_166732867.1|515914_516973_+|phenylacetate-CoA-oxygenase/reductase-subunit-PaaK
MTVFHRLNVAAIERETPDAVAITLRVPDELKSHYGYTPGQHLTLKARVNGEELRRCYSICSAPQDGVLQIGIKAIHQGRFSSFINQSLQVGDELEVMLPQGRFGYQPQAQTQGNYLAIAAGSGITPMLSIIKATLQLEPNSQFTLIYGNRTSRSVMFKEALSDLKNRYPQRFQPLYLFSQENLDSPLLSGRIDRDHLTALGNTLVDFNEFDHAFICGPEAMMDDAHTALELAGMPAERIHSERFNTSGIVARPANAGSRNATQVEIRLDGRSLKIDVGSEDDSILDAALRQGADLPYACKGGVCATCKCKLKAGEVDMAINYSLEPDQLAAGYVLSCQSWPRGEGVVLDFDV
>NZ_CP050171.1|WP_166735060.1|515402_515900_+|phenylacetate-CoA-oxygenase-subunit-PaaJ
MNITRLQPAEIPQIWHCLQQISDPELPVLSITDLGMVRDVERDGAGWHITFTPTYSGCPATEFLLNAIEQTLNEAGFSPVKITISLSPAWTTDWMNADARQRLREYGVAPPQGQTCEKPLAHGPVQCPRCGSEHTEKISEFGSTACKALYRCCECREPFDYFKCI
>NZ_CP050171.1|WP_039996003.1|514632_515394_+|phenylacetate-CoA-oxygenase-subunit-PaaC
MTMSNAATISYALRLGDTPLILAQRLCAWCGHAPELEIDLALANIGLDLLGQARNFLAYAAELSGPQHSEDSLAFGRDEREFHNLLLAEQPNGGFNDTLVRQFLLDTYHVLLHRELSRSKDGQLAAIAAKSLKEADYHLRFSHGWMIRLGDGSEISHQKIQQSLNDLWRFTAELFHADEIELQLAELGIAVDPRQLQAPWQAMVNDTLQQATLALPTEQAFRHGGKQGRHTEHLGPMLAEMQFLPRAYPNCSW
>NZ_CP050171.1|WP_021180891.1|514335_514623_+|1,2-phenylacetyl-CoA-epoxidase-subunit-B
MTHAEWPLYEVFIRSKQGLAHRHVGSLHAADDQMALENARDAYTRRSEGCSIWVVQSCHLIASQAEDRAAFFDPSDDKIYRHPTFYTIPDGIKNM
>NZ_CP050171.1|WP_166732873.1|523450_524392_+|phenylacetic-acid-degradation-operon-negative-regulatory-protein-PaaX
MEHKLDDFIRHALSAQPISGTSLIISLYGDALSHRGGEVWLGSLSALLEALGFGDRFVRTSVFRLQKEGWLDVEKIGRRSYYRVTEQGMRQFRHAESKIYLSEQPQWDGKWELLLLESAEKTERARLKKELGWLGFGQIANNLMAAPTHAQTDVAALLGELNASEQVIYFRADYPYNRSEQTLRQMVANCWSLSEVAGYYHEFIVSFRPLMALLREADEQELTPQRCFQIKLLLIHFFRRVVLKDPLLPDALLPAQWEGQIARNLCINIYQRVDRAATEYVSALAETSIGTLPAPSAGYYRRFGGLPRDPTTF
>NZ_CP050171.1|WP_166732874.1|524404_525001_+|phenylacetic-acid-degradation-protein-PaaY
MPVYQIDGLTPVVDPSSYVHPTAVLIGDVIIGKGVYIGPNASLRGDFGRIVVEDGANVQDNCVMHGFPQQDTVVEQDGHIGHSAILHGCRVRRNAMIGMNAVIMDGAVIGENSIVGAGSFVKAAAEIAANQLVIGSPARVIRELTEQELAWKRTGTLQYQELVLRCKNSLKEVAPLSEPEPGRQRLNFGDHIIPKSQL
>NZ_CP050171.1|WP_166732875.1|525030_526434_-|amino-acid-permease
MKDAKRFDAIAQRQDGLKKHLTAGQMSMLAIGGAIGTGLFLGSAYAIQMAGPSVLLSYFIGGVIALLLMGCLAEMTSEHPTPGSFGDYAEFYLSPLFGFLVRYSYWSCVVLAVGTEVTAIGMYMQFWFPGTPIWPWVLLFSAAVIVVNVVGVKSFGQVEYALSTVKVVAISAFIMIGIGILAFSANPTFGIRNFTDNGGFFPFGVKGMWFAVIVSIFSYLSIEMIAVAAGEAKNPVVAVKSAFKGTILRLFIFYMMSIALMLAIVPWRQSGTGESPFLVAMNVIHLPAAAGIFNFVVLIAALSAMNSQLYITTRMMFSLSRAGQAPAALGRLSKRGIPVNALALSCVGIIVSIVLSIAAPEQSFAVMMSISVYGACFTWLMIFVTHLFFRRQHTQTHLKFRMWGYPYFTLAGALLMAGLMITTLFTDFFRMTLWFGIPFTALLVAIYFYSRRGQASVAAESPVQSLE
>NZ_CP050171.1|WP_115158106.1|526449_527634_-|aspartate/tyrosine/aromatic-aminotransferase
MFAHITPSTPDPIMSLMEAYMQDANPQKVNLGIGLYYDHQGNIPLMQAVHIAEQRLLEQQRPHTYPPIEGSALFARQIQTLLFGEPADRIATVQSVGGSGALKLGADFIYHYLARREIWVSDPTWANHWAIFEGAGLKVNTYPYFDDASGQLRLEAMLDMLSTLPEGAVVLLHPCCHNPTGTDLSPAQWQRVIDVVQQRRLLPFFDIAYQGFGDGLDEDCFALRAMLKTDVDFLVSNSFSKNVALYGQRLGGLSVRCATAEAAVNVKGALKTLIRRSYSCPPTHGSQIVETLLADPQLYQLWASELTTMRQRIKQMRVGLAAGLEQGGTTLDYTRIRDQKGMFSYTGLNERQLGQLRQQYSIYLVAPGRMCLPGLNQQNLDYVTAAILDVTRTA
>NZ_CP050171.1|WP_071680930.1|527823_528195_-|RidA-family-protein
MRTVIETGLPEIGQPFSWATKGGGMLFTAHGPVRQDGTIETGDPEKQITLTFDNLATTLKAANSHSDNVLQVIVYLTDVNDVKLLDKIYQQYFNYPYPNRSTVIVDKLVVPGMKIEITVSAVA
>NZ_CP050171.1|WP_166732876.1|528178_528994_-|alpha/beta-hydrolase
MKLLAGSYDNATTVADENEILLSFQSRSQRVYQQQRHELNMAYGDAPREVFDWFYSTEEYKGTIIFIHGGYWQFCDKQDFAFIASMPLSLGFDVVLVEYTLAPAANLADICQQIGVALDVIERRLKPRGDKPVYLTGHSAGGHLAAYWQHHPLVQAVFPISGIFELQPLLASYVNQQLKLTTQQIEALSPARNIPLSLKPMVLFYGAAELPELIGQSLYYYSALRAQGLPVSRYALPGANHYSVLDAVFTADGALHRFLLTDGEYLDAHSH
>NZ_CP050171.1|WP_166732877.1|529218_530124_-|LysR-family-transcriptional-regulator
MDRLDELAIFVAVIQQGSLAGAARKLRRSAPAVTRAIAALEQRLGARLVERTTRRLAPTEAGLRLAERARALLHDYQDAVMDTAEAQLSGLLRITSPVQFGRKHVAPMVMAFLERYPQIHIDMQLNDRNLELIDEGLDVAVRIGHLQDSSKVARKLGEVTRITVASPAYLAQRGVPLEPAQLSDHDTIVGTLRPTSGEWRFGPDENGERVRLTPRLLLNEVETQLLAVRAGKGIARLLSYQVADDLANGTLVRLLAAYEPQPVPVQLVANNVQYMPLKVRTFWDYAYQHLSQIAQIQPARP
>NZ_CP050171.1|WP_166732878.1|530225_530852_+|glutathione-S-transferase
MQTLKLYGTPASGHCHRVELLLRILDLPYEYYEASATVRRSEAFLRLNPVGQIPVLLTDEQVLSDSNAIMVYLVKRYAPDSHWLPEDPLAAAQVQAWLSKAAGEVRYGPASCRMVVQFSAPENYPSAQAISARFLPQLEQHLAEREFLATSLPTIADLACYSYLAVAPEGGVSLKPFPAIQHWLDRIAALPGFFPMPALPLPDQAVGQ
>NZ_CP050171.1|WP_094983086.1|530853_531777_+|pyridoxamine-5'-phosphate-oxidase
MSPSMFHPDEQLAQDLAGFDAVSGNIYTAMPDQHREFFAHLPYLFVATLDERQWPVATVFSGPAGFLRSPDETHLRIVSPRRADDPAQASLYPGQPVGALGLDFSNRRRNRVNGIISRTDKNRLEIVVQQSFGNCPQYIQRRELFAEPSVAAPIEQLSSLDDQARQLIQQADTCFVASYAHGDSAQGGVDISHRGGKPGFIHLAGETLWIPDFRGNRYMNTLGNLLAQPRAALLFIDFARGDILHLQGETQILWQAENEAVEGAERYWRFDITSAWRFRQALGWRGRNVEFSPATLRTGIWQNHAES
>NZ_CP050171.1|WP_021180872.1|531951_532176_+|YdcH-family-protein
MFPEYRELISHLKSSHPRFQSLFDKHNQLDHQISRLEGPAGNGYSDEVVRLKKEKLHIKDELHKILKAEEAAAK

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Crispr_ID: NZ_CP050171_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP050171_2

2481720-2481860

Orphan

Consensus_repeat	Method
GGGAGAGGGAGCTGATCCAGTGTCGCGAGTTAACCTGTGCGGCTTCGGAAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP050171_2

>merge|NZ_CP050171|2|2481720-2481860|CRISPRCasFinder
GGGAGAGGGAGCTGATCCAGTGTCGCGAGTTAACCTGTGCGGCTTCGGAAAGAGTGGGGAGTATCAACAAACGCAGATCGGTCCCCTTTGGGAGAGGGAGCTGATCCAGTGTCGCGAGTTAACCTGTGCGGCTTCGAAAAG

>NZ_CP050171|2|2|2481720-2481860|CRISPRCasFinder
GGGAGAGGGAGCTGATCCAGTGTCGCGAGTTAACCTGTGCGGCTTCGGAAAG	AGTGGGGAGTATCAACAAACGCAGATCGGTCCCCTTT
GGGAGAGGGAGCTGATCCAGTGTCGCGAGTTAACCTGTGCGGCTTCGAAAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP050171.1\|WP_071683748.1\|2477852_2479397_+\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|235463
NZ_CP050171.1\|WP_166733673.1\|2483014_2484211_-\|glycine-C-acetyltransferase	unknown	unknown	gnl\|CDD\|235893
NZ_CP050171.1\|WP_166733672.1\|2480743_2481694_+\|divergent-polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|225416
NZ_CP050171.1\|WP_021181851.1\|2490849_2491944_-\|glycosyltransferase-family-9-protein	unknown	unknown	gnl\|CDD\|340821
NZ_CP050171.1\|WP_166733677.1\|2489840_2490833_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|182223
NZ_CP050171.1\|WP_071683747.1\|2475267_2476287_-\|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|234629
NZ_CP050171.1\|WP_021807268.1\|2488611_2489844_+\|O-antigen-ligase-family-protein	unknown	unknown	gnl\|CDD\|225844
NZ_CP050171.1\|WP_071683746.1\|2473111_2474212_+\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225718
NZ_CP050171.1\|WP_039996198.1\|2479406_2480741_+\|murein-hydrolase-activator-EnvC	unknown	unknown	gnl\|CDD\|236942
NZ_CP050171.1\|WP_166733676.1\|2487419_2488583_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340839
NZ_CP050171.1\|WP_024482902.1\|2476840_2477089_-\|glutaredoxin-3	unknown	unknown	gnl\|CDD\|182607
NZ_CP050171.1\|WP_021807259.1\|2477115_2477550_-\|rhodanese-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238089
NZ_CP050171.1\|WP_166733675.1\|2486457_2487423_+\|lipopolysaccharide-heptosyltransferase-RfaC	unknown	unknown	gnl\|CDD\|236809
NZ_CP050171.1\|WP_021181859.1\|2481979_2483005_-\|L-threonine-3-dehydrogenase	unknown	unknown	gnl\|CDD\|180054
NZ_CP050171.1\|WP_166733678.1\|2491945_2492902_-\|deacetylase	unknown	unknown	gnl\|CDD\|200561
NZ_CP050171.1\|WP_166733671.1\|2471265_2472771_-\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NZ_CP050171.1\|WP_021807264.1\|2484451_2485384_+\|ADP-glyceromanno-heptose-6-epimerase	unknown	unknown	gnl\|CDD\|182998
NZ_CP050171.1\|WP_166733674.1\|2485408_2486455_+\|ADP-heptose--LPS-heptosyltransferase-RfaF	unknown	unknown	gnl\|CDD\|182835
NZ_CP050171.1\|WP_021181865.1\|2476286_2476757_-\|protein-export-chaperone-SecB	unknown	unknown	gnl\|CDD\|180234
NZ_CP050171.1\|WP_021181867.1\|2474347_2475169_-\|serine-O-acetyltransferase	unknown	unknown	gnl\|CDD\|182987

Protein	Function_ID	Function_description	E-value
NZ_CP050171.1\|WP_071683748.1\|2477852_2479397_+\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	gnl\|CDD\|235463	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase.	0
NZ_CP050171.1\|WP_166733673.1\|2483014_2484211_-\|glycine-C-acetyltransferase	gnl\|CDD\|235893	PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzyme A ligase; Provisional.	0
NZ_CP050171.1\|WP_166733672.1\|2480743_2481694_+\|divergent-polysaccharide-deacetylase-family-protein	gnl\|CDD\|225416	COG2861, COG2861, Uncharacterized protein conserved in bacteria [Function unknown].	1.64205e-102
NZ_CP050171.1\|WP_021181851.1\|2490849_2491944_-\|glycosyltransferase-family-9-protein	gnl\|CDD\|340821	cd03789, GT9_LPS_heptosyltransferase, lipopolysaccharide heptosyltransferase and similar proteins. Lipopolysaccharide heptosyltransferase (2.4.99.B6) is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family also contains lipopolysaccharide 1,2-N-acetylglucosaminetransferase EC 2.4.1.56 and belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	3.48456e-57
NZ_CP050171.1\|WP_166733677.1\|2489840_2490833_+\|glycosyltransferase	gnl\|CDD\|182223	PRK10073, PRK10073, putative glycosyl transferase; Provisional.	3.09747e-32
NZ_CP050171.1\|WP_071683747.1\|2475267_2476287_-\|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	gnl\|CDD\|234629	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase.	0
NZ_CP050171.1\|WP_021807268.1\|2488611_2489844_+\|O-antigen-ligase-family-protein	gnl\|CDD\|225844	COG3307, RfaL, Lipid A core - O-antigen ligase and related enzymes [Cell envelope biogenesis, outer membrane].	0.000242263
NZ_CP050171.1\|WP_071683746.1\|2473111_2474212_+\|Fic-family-protein	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	1.84696e-52
NZ_CP050171.1\|WP_039996198.1\|2479406_2480741_+\|murein-hydrolase-activator-EnvC	gnl\|CDD\|236942	PRK11637, PRK11637, AmiB activator; Provisional.	0
NZ_CP050171.1\|WP_166733676.1\|2487419_2488583_+\|glycosyltransferase	gnl\|CDD\|340839	cd03811, GT4_GT28_WabH-like, family 4 and family 28 glycosyltransferases similar to Klebsiella WabH. This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.	8.70925e-35
NZ_CP050171.1\|WP_024482902.1\|2476840_2477089_-\|glutaredoxin-3	gnl\|CDD\|182607	PRK10638, PRK10638, glutaredoxin 3; Provisional.	3.11726e-58
NZ_CP050171.1\|WP_021807259.1\|2477115_2477550_-\|rhodanese-like-domain-containing-protein	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	4.47677e-28
NZ_CP050171.1\|WP_166733675.1\|2486457_2487423_+\|lipopolysaccharide-heptosyltransferase-RfaC	gnl\|CDD\|236809	PRK10964, PRK10964, lipopolysaccharide heptosyltransferase RfaC.	0
NZ_CP050171.1\|WP_021181859.1\|2481979_2483005_-\|L-threonine-3-dehydrogenase	gnl\|CDD\|180054	PRK05396, tdh, L-threonine 3-dehydrogenase; Validated.	0
NZ_CP050171.1\|WP_166733678.1\|2491945_2492902_-\|deacetylase	gnl\|CDD\|200561	cd10935, CE4_WalW, Putative catalytic domain of lipopolysaccharide biosynthesis protein WalW and its bacterial homologs. This family corresponds to a group of uncharacterized lipopolysaccharide biosynthesis protein WalW found in bacteria. Although their biochemical properties remain to be determined, members of this family is composed of a seven-stranded barrel with detectable sequence similarity to the six-stranded barrel rhizobial NodB-like proteins, which remove N-linked or O-linked acetyl groups from cell wall polysaccharides and belong to the larger carbohydrate esterase 4 (CE4) superfamily.	5.30292e-111
NZ_CP050171.1\|WP_166733671.1\|2471265_2472771_-\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	3.45196e-117
NZ_CP050171.1\|WP_021807264.1\|2484451_2485384_+\|ADP-glyceromanno-heptose-6-epimerase	gnl\|CDD\|182998	PRK11150, rfaD, ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional.	0
NZ_CP050171.1\|WP_166733674.1\|2485408_2486455_+\|ADP-heptose--LPS-heptosyltransferase-RfaF	gnl\|CDD\|182835	PRK10916, PRK10916, ADP-heptose--LPS heptosyltransferase RfaF.	0
NZ_CP050171.1\|WP_021181865.1\|2476286_2476757_-\|protein-export-chaperone-SecB	gnl\|CDD\|180234	PRK05751, PRK05751, preprotein translocase subunit SecB; Validated.	5.62632e-91
NZ_CP050171.1\|WP_021181867.1\|2474347_2475169_-\|serine-O-acetyltransferase	gnl\|CDD\|182987	PRK11132, cysE, serine acetyltransferase; Provisional.	0

>NZ_CP050171.1|WP_166733672.1|2480743_2481694_+|divergent-polysaccharide-deacetylase-family-protein
MYYSKTRTALLLSALLCVSAAQAGKLSIVIDDVGYRPHEENAVLQMPTAISVAVLPNAPHAHLMATKAHSQGREVLIHMPMAPLSKQPLERDTLQPSMSSEEVQRIIRNAVNNVPFAVGMNNHMGSAMTSSLSGMQKVMQALESYHLYFLDSMTIGNSQATHAAAGTGVKVIKRKVFLDDTANPDDIRRQFNRAVELARRNGSAIAIGHPRPATVKVLQQMLATLPSDIVLVKPSSLLNEPQQSGSGYVPPSKPHKPQPKNPFTGGIKQCKVKLPQEGVNASHALGIIAESVAQSPVVLVIKRHWQHWMGSEPTKP
>NZ_CP050171.1|WP_039996198.1|2479406_2480741_+|murein-hydrolase-activator-EnvC
MREKANFALSRVTRSANSGSQPLPERSAPRKLTTLCASVFFAGALLLPFTSNAAEDNKSQLKDIQQSIAEKEKAVKQQQQQRSSLQNQLKLQEKTIAQASRSLRDTQGTLDILGKDIAGLNTSIAKLQTQQSTQQEILAKQLDAAFRQGQHSALQLVLSGEETQRSERMLAYFGYLNEARQQSIEQLKQTRKQLAEQKSSLVAKQGQQKSLLGEQQTQQQKLEQARIARKKTLTALEASLEKDQQRLVELRQNESRLRDQIARAEREARARAEREAREAAKVREQVKVKEQQAKKTGTSYKPSEGERSLMARTGGLGKPAGQAVWPVRGRIEHRFGEQLQGELRWKGMVISAAEGSEVKAIADGRVLLADWLQGYGLVVVVEHGKGDMSLYGYNQSALVSVGAQVRAGQPIALVGTSGGQGTPSLYFEIRRQGQAVNPQPWLGR
>NZ_CP050171.1|WP_071683748.1|2477852_2479397_+|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase
MSSKKKPMVLVILDGYGHREEQQDNAILNAKTPVMDRLWQQQPHTLIAASGLDVGLPDGQMGNSEVGHVNLGAGRIVYQDLTRLDKEIKDGDFFTNATLTSAVDKAVKAGKAVHIMGLMSPGGVHSHEDHILAMIKLAAQRGAKAVYLHAFLDGRDTPPRSAENTLKRFSDEFATLGAGRIATVIGRYYAMDRDNRWDRVQLAYDLMTQAKGEFTADNAVAALQAAYARDENDEFVKPTVIQAAGEASAEMNDGDALIFMNFRADRARQITRAFVNADFDGFPRSKVVKFGDFVMLTEYAADIKTACAYPPASLANTFGEWLMKHDKTQLRISETEKYAHVTFFYNGGVEEPFKGEDRILINSPKVATYDLQPEMSSAELTEKLLAAIHSGKYDAIICNYPNGDMVGHTGVYDAAVKAVETLDNCIAQVVEAVKAVDGQLLVTADHGNAEQMRDPATGQAHTAHTSLPVPLIYIGKPAKAVEGGKLSDIAPTMLSLMGMEIPQEMTGKPLFIVE
>NZ_CP050171.1|WP_021807259.1|2477115_2477550_-|rhodanese-like-domain-containing-protein
MLQEIMQFVSRHPILSLAWVGLLAAVIVMTFKSRFSKVKEIARGEATRLINKEDAVVVDTRTRDDFRRGHIANAINLTASEIKTGSFGELDKHKAQPVIVVCANGTTSREPAENLSKAGFEQVYTLKDGIAGWSGENLPLARGK
>NZ_CP050171.1|WP_024482902.1|2476840_2477089_-|glutaredoxin-3
MANIEIYTKATCPFCHRAKALLNSKGAAFSEIAIDGDNVKREAMIARSGRTTVPQIFIDGQHIGGCDDLHALDARGGLDPLL
>NZ_CP050171.1|WP_021181865.1|2476286_2476757_-|protein-export-chaperone-SecB
MSEQNSTEMAFQIQRIYTKDISFEAPNAPQVFQQEWQPEVKLDLDTASSHLADDVYEVVLRVTVTASLGEETAFLCEVQQAGIFSISGIEGTQLAHCLGAYCPNILFPYARECITSLVSRGTFPQLNLAPVNFDALFMSYLQQQAEGESAEPHQDA
>NZ_CP050171.1|WP_071683747.1|2475267_2476287_-|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase
MNTVNASMTVIGAGSYGTALAITLARNGHPVVLWGHNPEQIQILQRDRCNQAFLPGVPFPDTLLLETDLARALAASRDVLVVVPSHVFGDVLRQLKPHLRPDARIVWATKGLEAETGRLLQDVAREALGDTIPLAVVSGPTFAKELAAGLPTAIALAATDEQFAEDLQQLLHCGKSFRVYSNPDFIGVQLGGAVKNVIAIGAGMSDGIGFGANARTALITRGLAEMSRLGSALGADPSTFMGMAGLGDLVLTCTDNQSRNRRFGIMLGQGKGVQEAQDSIGQVVEGYRNTKEVLALAQRFGVEMPITEQIYQVLYCNKNAREAALTLLGRTKKDEKHSA
>NZ_CP050171.1|WP_021181867.1|2474347_2475169_-|serine-O-acetyltransferase
MSSEELEQVWSSIKSEARALADCEPMLASFFHATLLKHENLGSALSYILANKLANPIMPAIAVREVVEDAYRSDAQMIVSAARDILAVRLRDPAVDKYSTPLLYLKGFHALQAYRIGHWLWMQGRQALAIYLQNQISVAFGVDIHPAATIGCGIMLDHATGIVIGETAVVENNVSILQSVTLGGTGKTSGDRHPKIREGVMIGAGAKILGNIEVGKGAKIGAGSVVLQPVPPHTTAAGVPARIVGRPESDTPSMDMDQYFNGANHGFEYGDGI
>NZ_CP050171.1|WP_071683746.1|2473111_2474212_+|Fic-family-protein
MQWDPEKPFNQLPPLPPMDELMESVPVLKSCIKARAALAELKQAGELLPNQGLLINLIPILEAKDSSEIENIVTTSDKLFQFSQEDSLADPATKEALRYRTALYDGFKHLGQRPLCTSTAMGICSTLKNTVMDIRRIPGTALVNNEHKVVYTPPVGEELIRSLLKNWENFIHADDDIDPLVKMAISHYQFEAIHPFTDGNGRTGRILNVLFLIEKNLLTLPILYLSRYIVTHKADYYGLLRGVTASGDWVPWIVFMLDAVNETSQWTTAKIAAIRELLDVSTQYIRNSLPKIYSYELIQVIFEQPYCRISNLVDQGIAQRQTASTYLKQLCEIGVLNEITVGREKLYVHPKLIQLMTRDDNTVLPY
>NZ_CP050171.1|WP_166733671.1|2471265_2472771_-|PLP-dependent-aminotransferase-family-protein
MNRLTEKQLQTLLLQKNLAKQTVPEVSLTMALAAAFKTMIQQGEFITGQRLPASRALAASLQLSRGTIENCYTALETEGYVCREVGRGSFVAQRQQPLLGLTSEHSVAPFGGQVTLSRRSSQHTRPESGNLPQLRAFSPGMPETRNFPIHTWLRLYQQTVKEEGLSISAGSNLQGNIHLREAICDFLLAERGVKAQADRILIVSSTQQSLSLCAQVLADAGDSVFIENPGYTGAIKALRAAQLKPIPITVDEQGICTDEIIRSQANGKFVYVTPSNQYPTGRALSLARRLALIEAAKTRDMWIIEDDYDSEFHYQGIATACLQGLDPHQRTIYMGTFSKTLFPDLHVAYMVLPEALVKPMTTARANTDSQVSGIAQRTLAKFIMQGHYREHVLTMKKIYSSRAALFINEINKHCGLKVKVIVPNCGLQILCLVESKQLEQAVAHRASEYNLTLRSVSEFCTADIPLSGWLLGFAALDPIEIAYNVEQFSQLLTRCLNEIDN
>NZ_CP050171.1|WP_021181859.1|2481979_2483005_-|L-threonine-3-dehydrogenase
MKALAKLKAEEGIWMTDVPQPELGHNDVMIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVAIGQEVKGFSIGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNRPGSFAEYLVIPAFNAFKIPDNISDELASIFDPFGNAVHTALSFDLVGEDVLVSGAGPIGIMAAAVCKHVGARHVVITDVNEYRLELARKMGVTRAVNVSKENLTDVMAELGMTEGFDVGLEMSGAPPAFRSLLNAMNHGGRIAMLGIPPSDMSIDWTQVIFKGLFIKGIYGREMFETWYKMAALIQSGLDLTPIITHRFSIDEFQQGFDAMRSGQSGKVVLSWD
>NZ_CP050171.1|WP_166733673.1|2483014_2484211_-|glycine-C-acetyltransferase
MSASFYQQLEQQLATTRAEGLFKQERIITSAQQADISVADGRQVINFCANNYLGLANHPALIKAAKAGMDSHGFGMASVRFICGTQDSHKQLEQKLADFLGMEDAILYSSCFDANGGLFETLLGPEDAIISDALNHASIIDGVRLCKAKRYRYANNDMGQLAEQLQQAKADGARHIMIATDGVFSMDGVIANLKGVCDLADQYDALVMVDDSHAVGFVGANGRGTHEYCEVMDRVDIITGTLGKALGGASGGYTAGKKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLELLEDGDALRDRLWANASLFREKMTAAGFTLAGADHAIIPVMLGEAKLAQDFANALLKEGIYVTGFFYPVVPKGQARIRTQMSADHSPEQIERAVEAFIRIGKTLGVIA
>NZ_CP050171.1|WP_021807264.1|2484451_2485384_+|ADP-glyceromanno-heptose-6-epimerase
MIIVTGGAGMIGSNIIKALNENGYRDILVVDNLKDGTKFVNLVDLDIADYVDKEDFIASIMAGDDLGDIDAIFHEGACSSTTEWDGKYMMDNNYQYSKDILHYCLDRQIPFLYASSAATYGGRTDNFIEERQFEQPLNVYGYSKFLFDQYVREILPEADSQVCGFRYFNVYGPREGHKGSMASVAFHLNNQINRGENPKLFAGSENFKRDFIYVGDVAAVNLWFWKNGVSGIFNCGTGRAETFQAVADAVVEYHQSGAVEYIEFPEKLKGRYQAYTQADQTKLRAAGYDAPFKTVAEGVKEYMAWLNRPA
>NZ_CP050171.1|WP_166733674.1|2485408_2486455_+|ADP-heptose--LPS-heptosyltransferase-RfaF
MKILVIGPSWVGDMMMSQSLYRTLKAEHPSAEIDVMAPAWCRPLLARMPEVNQALAMPLGHGALALGERRRLGHALRANGYDRAYVLPNSFKSALVPFFANVPQRTGWRGEMRYGLLNDLRVLDKAAFPLMVQRYVALAYDKQRIQRAEDLPQPILWPQLQVSDEEIAETTSAFNLTDHRPIIGFCPGAEFGPAKRWPHYHYATLAQMLIDAGYQITLFGSAKDHEAGEQIRDALAEKSRDFCFNLAGETQLEQAVILLASCRAVVSNDSGLMHVAAALNKPLIALYGPSSPDFTPPLSHQAKVIRLISGYHKVRKGDADQGYHQSLIDIQPQQVLDALTPLLAASEE
>NZ_CP050171.1|WP_166733675.1|2486457_2487423_+|lipopolysaccharide-heptosyltransferase-RfaC
MQVLIVKTSSMGDVLHTLPALTDAMHAIPGIRFDWVVEEGFSQIPTWHPAVDRVIPVAIRRWRKNWFGSETRQQRCDFKRQVQERDYDIVIDAQGLIKSAALVTRIAHGSKHGLDCKSVREPFASWFYNHRHEIDKQQHAVERIRELFAKSLGYAKPQSTGDYAIAARFLSQPPADAGQYLVFLHATTRDEKHWPEANWRELIALIAPSGINIKLPWGAEHERQRALRLAEGFEHVEVLPKLSLQQVAEVLAGAKAVVSVDTGLSHLTAALDRPNITLFGPTDPGLIGGYGQNQHSLISPEKNMATLTADAVWTELQKVIA
>NZ_CP050171.1|WP_166733676.1|2487419_2488583_+|glycosyltransferase
MKKLHIINLGKMGGVERLFLQYINDTHDGSNQVICVSSEVGEEIRQQMPNQQVTFANRLFNSLPLRCPQFLRKYLLQRKIERANADVIIVWDLIPGLAAKPKRGKLVYYDHGCSWRYAKNHKTLRFFAMLDGVISASHASKRVMELRFNLPCPNPVVINRIKTPTGIGETPKSLAKPIRIGTASRLVSLKGISVSLLMMQELLRRGHDVYLEIAGKGPDRAAFEALAAKLQLGDRVVFSGFQDNVADFFNRTQIYMSTPITEPFGLSCMESLYFGVPVIFPMVDGQPEAVKDGYCGIGLTPTVSIEEHQRLTGIKVDFPHEVYDPLSDSLVTPKLLSHIDCADAVEKLLVAETYHQMSQNARHYPAQHFSYALFKTEFDDTLQSFIA
>NZ_CP050171.1|WP_021807268.1|2488611_2489844_+|O-antigen-ligase-family-protein
MFKETAPHPIFSYLIYLGCAIAFCTIPFGFDTGRNLFYVSSYISFIAVCLHLRYFLKNKRNLILPLLFFCVGMGTIFWMNHFKQPGEYINIYRSYMSTGKLQIATAFILLIALNERLCMQRAFIVVALVCGLAVNGYALYQGLQLDISRVELNFDRATVVAYLMTAISLVMMKAILMLRTKYRIPLYVVGFLLTFSTLILTGTRAAILVYPVAICLSLLATKDLVTRKHKIQLVASVPLLLLACGFAFKSQIEQRVADFKTNLQMIDQPEVDNSIISRLTMQVIAIRTGSLAPMGQSAEQRGEEIRAIVAQEPRLYGVTPYINVHLHNELLETYSLKGLWGSLLLLALYIGLFISSFKPYRNALLLGVTFSLFVYGLSDVIFFSTEGTAVFCLAIIASVLSVKKRQEPSV
>NZ_CP050171.1|WP_166733677.1|2489840_2490833_+|glycosyltransferase
MSSSPLLLSFIVPIYNNEDFVIASLSSLYDQIGDDIEVVIIDDGSSDASAALVSQFLAARQHPHSKFITQANGGVAHARNVGLRHVSGRYVAFLDGDDLLSSDYLAILRPLLLTGRDDLIDFNYQKFSGNPPAVPANSEIRYRSYDFEQHGLASLKPLFEHSMWHVWSRIYRRTLLAGETFENGRRYEDVIFTPFQYFKTRHIAHLDHPLYLYRDNDRGITRNIRAKDSEDMLFAMQKMLRFVDAHRGDEPLRQLAALMLANAFSELKAMSKAVYGYYRYPPETLAILRQTAALCSNSDVPHKKVRQMRFAHVDSCLSKIRRWLKKKRTG
>NZ_CP050171.1|WP_021181851.1|2490849_2491944_-|glycosyltransferase-family-9-protein
MSKKWKIKAADWFLRRYTAKHGRFQPPATFDSRLQFENIVIYSTTALGDFMFNTPVLRAMRERYPAAHITLVVHEKNRELVENGRYYDRVVYWNSKIKTLGPLLKSLREHQPDLALIMHSHLPYDIISAIMAGAKYVIRDNYSSGICGLEPWLTNYVFHYYGHFIRRKLELVSILGCRSDDPTMEIPAPYTPGSKNPDFCTIGFQLGASTESRCWPVGHFAKLADMLVARYDNMRFVLIGAPMEEGKAQQFQRLINANTQACVDNQIGKTGLQGALTLISSLDVLVTGDTGPLHLAVALKTKTISLFVTADPRSTGPIQDHQLHRIIHQSRTGYTMPLEAEGPVGVIQPQRVFDEIVAHVPLNP
>NZ_CP050171.1|WP_166733678.1|2491945_2492902_-|deacetylase
MTKPAFLITIDTEGDNLWQNHDRISTENTCFLPRFQALCEKYACKPVYLTNYEMAVDTQYVEFARDVIARGTGEVGMHLHAWNSPPLTPLTDDDWRHKPYLIEYPADQIRAKVDHMTKLLEDTFQTKMLSHRAGRWAFNEFYASLLLEYGYQVDCSVTPRVNWQYSPGNPQGNGGTDYRHFPSQAYFIDPANIAKPGNSTLLEVPMSIQYKHSALMNAVKQGYDRLRGKKRSPSVHWLRPSGNNLDKMKLVVERSLAQGHDYVEFMLHSSEFMPGGSPTFKTEQDIDALYRDLEQLFAWLQQRTVGMTLAEYYQLKVN

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

392523 : 426692

Escherichia_phage(35.29%)

head,terminase,lysis,plate,integrase,tail,portal,capsid

attL 392402:392420|attR 425865:425883

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
392402:392420	attL	NA	NA	NA	NA
WP_071683683.1\|392523_392742_-	DNA-binding transcriptional regulator	S4TNZ3	Salmonella_phage	1.8e-21	65.3
WP_166732800.1\|392813_393995_-	phage late control D family protein	Q6K1G4	Salmonella_virus	8.2e-161	74.0
WP_166732801.1\|393991_394477_-\|tail	phage tail protein	A0A0F7LDE8	Escherichia_phage	5.7e-52	67.5
WP_166732802.1\|394492_396940_-\|tail	phage tail tape measure protein	U5N0T4	Enterobacteria_phage	1.0e-181	47.2
WP_166732803.1\|396932_397052_-\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	3.1e-12	79.5
WP_166732804.1\|397084_397381_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	1.4e-29	78.2
WP_071680397.1\|397443_397965_-\|tail	phage major tail tube protein	S4TNZ0	Salmonella_phage	1.0e-75	76.7
WP_166732805.1\|397979_399149_-\|tail	phage tail sheath protein	S4TRX2	Salmonella_phage	4.6e-188	82.1
WP_166732806.1\|399428_399854_-\|tail	tail fiber assembly protein	B6SCW7	Bacteriophage	6.2e-26	49.2
WP_166732807.1\|399855_402231_-	hypothetical protein	Q858V4	Yersinia_virus	8.2e-59	55.5
WP_074030996.1\|402243_402771_-\|tail	phage tail protein I	Q858V5	Yersinia_virus	2.8e-76	73.6
WP_166732808.1\|402763_403672_-\|plate	baseplate assembly protein	A0A0F7LCJ3	Escherichia_phage	9.5e-125	76.8
WP_166732809.1\|403677_404025_-\|plate	baseplate assembly protein	F1BUP4	Erwinia_phage	5.6e-41	71.1
WP_166732810.1\|404021_404663_-\|plate	phage baseplate assembly protein V	A0A0M4S6F6	Salmonella_phage	2.3e-85	73.2
WP_166732811.1\|404815_406486_-	hypothetical protein	NA	NA	NA	NA
WP_166732812.1\|406668_407121_-	phage virion morphogenesis protein	O80313	Escherichia_phage	2.9e-50	71.1
WP_166732813.1\|407113_407581_-\|tail	phage tail protein	A0A0F7LA33	Escherichia_phage	1.6e-62	74.8
WP_166732814.1\|407661_408102_-\|lysis	LysB family phage lysis regulatory protein	O80310	Escherichia_phage	1.3e-21	47.4
WP_166732815.1\|408098_408608_-	lysozyme	A0A218M4K3	Erwinia_phage	2.2e-62	73.1
WP_166732816.1\|408591_408801_-	hypothetical protein	B6SD15	Bacteriophage	6.6e-05	46.4
WP_166732817.1\|408803_409007_-\|tail	phage tail protein	Q858W3	Yersinia_virus	9.2e-20	68.7
WP_166732818.1\|409006_409513_-\|head	head completion/stabilization protein	S4TNY1	Salmonella_phage	4.9e-62	72.0
WP_166732819.1\|409605_410352_-\|terminase	terminase	Q6K1I5	Salmonella_virus	1.0e-68	63.2
WP_166732820.1\|410355_411507_-\|capsid	phage major capsid protein, P2 family	Q778Y7	Enterobacteria_phage	3.6e-153	76.9
WP_071680414.1\|411569_412415_-\|capsid	GPO family capsid scaffolding protein	Q01088	Escherichia_phage	7.5e-108	70.5
WP_166732821.1\|412579_414352_+\|terminase	terminase ATPase subunit family protein	A0A0M4RE51	Salmonella_phage	3.3e-291	82.7
WP_166732822.1\|414348_415380_+\|portal	phage portal protein	Q6K1J0	Salmonella_virus	9.1e-164	80.7
WP_166732823.1\|415503_416625_-	hypothetical protein	NA	NA	NA	NA
WP_166732824.1\|416888_417647_-	hypothetical protein	NA	NA	NA	NA
WP_166732825.1\|418243_419959_-	hypothetical protein	NA	NA	NA	NA
WP_166732826.1\|420064_422161_-	replication endonuclease	A0A0F7LA09	Escherichia_phage	1.1e-251	62.6
WP_166735056.1\|422157_422442_-	DUF5405 family protein	A0A218M4I8	Erwinia_phage	2.0e-25	61.1
WP_166732827.1\|422441_422657_-	TraR/DksA family transcriptional regulator	A0A0F7LDI3	Escherichia_phage	7.7e-17	59.2
WP_166732828.1\|422644_422983_-	DUF5405 family protein	NA	NA	NA	NA
WP_166732829.1\|422975_423230_-	DUF2732 family protein	NA	NA	NA	NA
WP_166732830.1\|423293_423794_-	replication protein B	M1SV55	Escherichia_phage	7.2e-66	71.1
WP_166732831.1\|423790_423961_-	hypothetical protein	NA	NA	NA	NA
WP_166732832.1\|423966_424260_-	hypothetical protein	Q1JS60	Enterobacteria_phage	8.0e-33	70.0
WP_166732833.1\|424385_424685_+	helix-turn-helix transcriptional regulator	Q1JS61	Enterobacteria_phage	2.9e-38	77.8
WP_166732834.1\|424772_425780_+\|integrase	tyrosine-type recombinase/integrase	Q83VS6	Escherichia_phage	9.3e-121	62.4
WP_021180979.1\|425903_426692_-	phosphate starvation-inducible protein PhoH	A0A1B2ICF6	Erwinia_phage	1.0e-90	75.5
425865:425883	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1874887 : 1912577

Erwinia_phage(48.65%)

head,terminase,lysis,plate,integrase,tRNA,tail,portal,capsid

attL 1881154:1881173|attR 1913600:1913619

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_021806880.1\|1874887_1875901_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	7.4e-110	58.9
WP_001144069.1\|1876225_1876441_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_166733421.1\|1876578_1878327_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	3.0e-74	38.6
WP_166733422.1\|1878484_1880323_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.9e-34	33.3
WP_074031204.1\|1880372_1880861_-	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
1881154:1881173	attL	NA	NA	NA	NA
WP_071784412.1\|1881230_1881449_-	DNA-binding transcriptional regulator	A0A2I8TV89	Erwinia_phage	3.7e-27	75.0
WP_166733423.1\|1881539_1882694_-	phage late control D family protein	A0A0M5M5V5	Salmonella_phage	1.0e-139	65.5
WP_166733424.1\|1882690_1883164_-\|tail	phage tail protein	A0A0F7LDE8	Escherichia_phage	8.4e-48	66.9
WP_166733425.1\|1883176_1885861_-\|tail	phage tail tape measure protein	Q7Y4C8	Escherichia_virus	9.6e-149	46.1
WP_071784415.1\|1885853_1885985_-\|tail	GpE family phage tail protein	Q6K1G8	Salmonella_virus	4.5e-12	73.8
WP_024528260.1\|1886005_1886290_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	1.9e-26	69.8
WP_166733426.1\|1886344_1886854_-\|tail	phage major tail tube protein	A0A218M4J0	Erwinia_phage	2.1e-68	73.0
WP_166733427.1\|1886868_1888038_-\|tail	phage tail sheath protein	F1BUU3	Erwinia_phage	4.7e-185	81.4
WP_166733428.1\|1888398_1888626_-	hypothetical protein	NA	NA	NA	NA
WP_166733429.1\|1888597_1889254_-	hypothetical protein	NA	NA	NA	NA
WP_166733430.1\|1889572_1890055_-\|tail	tail fiber assembly protein	B6SCW7	Bacteriophage	1.3e-24	46.8
WP_166735112.1\|1889999_1891985_-	hypothetical protein	V9M0B7	Vibrio_phage	1.2e-10	25.6
WP_166733431.1\|1892748_1893276_-\|tail	phage tail protein I	U5N0U8	Enterobacteria_phage	3.4e-74	70.1
WP_166733432.1\|1893268_1894177_-\|plate	baseplate assembly protein	U5N3T9	Enterobacteria_phage	4.6e-127	78.1
WP_166733433.1\|1894181_1894532_-\|plate	baseplate assembly protein	F1BUP4	Erwinia_phage	3.2e-36	62.9
WP_166733434.1\|1894528_1895161_-\|plate	phage baseplate assembly protein V	A0A0M4S6F6	Salmonella_phage	1.7e-72	67.3
WP_166733435.1\|1895316_1896024_+	hypothetical protein	NA	NA	NA	NA
WP_166733436.1\|1896032_1896488_-	phage virion morphogenesis protein	O80313	Escherichia_phage	4.4e-38	57.8
WP_166733437.1\|1896474_1896948_-\|tail	phage tail protein	F1BUP9	Erwinia_phage	3.6e-59	71.7
WP_166733438.1\|1897043_1897475_-\|lysis	LysB family phage lysis regulatory protein	NA	NA	NA	NA
WP_166733439.1\|1897471_1897981_-	lysozyme	A0A218M4K3	Erwinia_phage	8.7e-59	67.7
WP_024528243.1\|1897964_1898174_-	hypothetical protein	B6SD15	Bacteriophage	1.3e-05	44.6
WP_166733440.1\|1898178_1898382_-\|tail	phage tail protein	F1BUQ5	Erwinia_phage	1.7e-18	62.7
WP_166733441.1\|1898381_1898876_-\|head	head completion/stabilization protein	M1SNN6	Escherichia_phage	9.7e-39	48.5
WP_166733442.1\|1898967_1899627_-\|terminase	terminase endonuclease subunit	F1BUQ7	Erwinia_phage	7.5e-79	68.5
WP_166733443.1\|1899630_1900719_-\|capsid	phage major capsid protein, P2 family	F1BUQ8	Erwinia_phage	7.6e-153	76.1
WP_166733444.1\|1900754_1901597_-\|capsid	GPO family capsid scaffolding protein	A0A218M4L9	Erwinia_phage	1.5e-71	53.7
WP_166733445.1\|1901735_1903508_+\|terminase	terminase ATPase subunit family protein	F1BUR2	Erwinia_phage	8.5e-287	81.5
WP_166733446.1\|1903507_1904530_+\|portal	phage portal protein	F1BUR7	Erwinia_phage	2.0e-163	79.2
WP_166733447.1\|1904580_1904925_-	STAS-like domain-containing protein	NA	NA	NA	NA
WP_166733448.1\|1904927_1905890_-	hypothetical protein	A4PE73	Ralstonia_virus	1.7e-55	44.2
WP_166733449.1\|1906192_1906417_-	hypothetical protein	NA	NA	NA	NA
WP_024528233.1\|1906438_1906633_-	hypothetical protein	NA	NA	NA	NA
WP_166733450.1\|1906708_1908922_-	replication endonuclease	S4TTC1	Salmonella_phage	3.4e-240	58.1
WP_166733451.1\|1909027_1909252_-	TraR/DksA family transcriptional regulator	A0A218M4I6	Erwinia_phage	3.2e-13	55.7
WP_166733452.1\|1909251_1909488_-	DUF2732 family protein	F1BUS3	Erwinia_phage	2.2e-09	56.1
WP_024528229.1\|1909554_1909857_-	hypothetical protein	NA	NA	NA	NA
WP_166733453.1\|1909868_1910048_-	DUF2724 domain-containing protein	F1BUS5	Erwinia_phage	1.3e-06	50.0
WP_166733454.1\|1910058_1910568_-	hypothetical protein	A0A1S6L008	Salmonella_phage	9.3e-45	53.0
WP_166733455.1\|1910598_1910862_-	hypothetical protein	A0A218M4I5	Erwinia_phage	4.3e-38	88.4
WP_166733456.1\|1910997_1911585_+	phage repressor protein CI	A0A218M4J1	Erwinia_phage	1.8e-63	59.9
WP_166733457.1\|1911584_1912577_+\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	4.2e-182	93.0
1913600:1913619	attR	NA	NA	NA	NA

DBSCAN-SWA_3

2212005 : 2223062

environmental_Halophage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_166733570.1\|2212005_2214081_+	hypothetical protein	H9YQA8	environmental_Halophage	1.7e-52	70.5
WP_024482717.1\|2214112_2215330_-	aspartate aminotransferase family protein	A0A1V0SKB7	Klosneuvirus	4.1e-30	27.0
WP_021181676.1\|2215424_2216000_-	aminodeoxychorismate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	9.5e-70	63.7
WP_037376694.1\|2216216_2216576_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_021181678.1\|2216559_2216883_+	DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_166733571.1\|2216920_2218750_-	hypothetical protein	F2QAF8	Phaeocystis_pouchetii_virus	6.0e-09	25.8
WP_166733572.1\|2218757_2220284_-	DUF853 domain-containing protein	A0A248XCZ8	Klebsiella_phage	7.1e-80	43.6
WP_021181680.1\|2220651_2221377_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_021807483.1\|2221376_2223062_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	3.5e-221	72.1

DBSCAN-SWA_4

2715448 : 2777641

Enterobacteria_phage(20.0%)

tRNA,plate,transposase,integrase

attL 2721874:2721888|attR 2780949:2780963

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_166733767.1\|2715448_2716840_+\|tRNA	L-seryl-tRNA(Sec) selenium transferase	NA	NA	NA	NA
WP_166733768.1\|2716836_2718678_+	selenocysteine-specific translation elongation factor	A0A2K9KZ60	Tupanvirus	7.6e-12	25.2
WP_021181331.1\|2718889_2720428_+	aldehyde dehydrogenase	NA	NA	NA	NA
WP_166733769.1\|2720473_2721718_-	MFS transporter	NA	NA	NA	NA
2721874:2721888	attL	NA	NA	NA	NA
WP_166733770.1\|2722072_2723065_+	acyltransferase	NA	NA	NA	NA
WP_166733771.1\|2723061_2723979_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_166733772.1\|2723981_2724533_-	isochorismatase family protein	NA	NA	NA	NA
WP_166733773.1\|2724688_2726140_-	xylulokinase	NA	NA	NA	NA
WP_166733774.1\|2726191_2727508_-	xylose isomerase	NA	NA	NA	NA
WP_166735129.1\|2730371_2731550_+	DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_166733775.1\|2731665_2733012_+	esterase-like activity of phytase family protein	NA	NA	NA	NA
WP_166733776.1\|2733273_2733963_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_166733777.1\|2734086_2736405_+	arginine decarboxylase	NA	NA	NA	NA
WP_166733778.1\|2736485_2737838_+	amino acid permease	NA	NA	NA	NA
WP_021181316.1\|2737931_2738516_-	DJ-1/PfpI family protein	NA	NA	NA	NA
WP_166733779.1\|2738960_2740139_+\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	2.8e-161	69.4
WP_074030892.1\|2740142_2740961_+	hypothetical protein	NA	NA	NA	NA
WP_074030893.1\|2741092_2741368_+	transcriptional regulator	NA	NA	NA	NA
WP_071784886.1\|2741410_2741602_-	toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_021807316.1\|2741737_2741914_+	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
WP_166733780.1\|2741906_2742251_+	hypothetical protein	NA	NA	NA	NA
WP_021807318.1\|2742295_2742577_+	hypothetical protein	NA	NA	NA	NA
WP_074030897.1\|2742573_2742930_+	DUF5375 family protein	NA	NA	NA	NA
WP_166733781.1\|2742940_2745628_+	DUF927 domain-containing protein	A0A1B0VP75	Pseudomonas_phage	7.6e-61	31.8
WP_166733782.1\|2746052_2746823_+	hypothetical protein	NA	NA	NA	NA
WP_166733783.1\|2746826_2747066_+	transcriptional regulator	Q7M294	Enterobacteria_phage	4.0e-14	57.7
WP_166733784.1\|2747483_2748719_+	hypothetical protein	NA	NA	NA	NA
WP_166733785.1\|2748715_2749831_+	DUF262 domain-containing protein	A0A0M4RT01	Citrobacter_phage	1.5e-07	26.9
WP_166733786.1\|2749832_2750576_+	hypothetical protein	NA	NA	NA	NA
WP_059199184.1\|2750898_2751525_-	hypothetical protein	NA	NA	NA	NA
WP_059199183.1\|2752420_2752813_-	hypothetical protein	NA	NA	NA	NA
WP_166733787.1\|2753109_2753394_-	hypothetical protein	NA	NA	NA	NA
WP_039996075.1\|2753597_2753990_-	hypothetical protein	NA	NA	NA	NA
WP_141234366.1\|2753982_2754294_-	hypothetical protein	NA	NA	NA	NA
WP_071925976.1\|2754521_2754713_-	hypothetical protein	NA	NA	NA	NA
WP_166733788.1\|2754742_2755141_-	hypothetical protein	NA	NA	NA	NA
WP_166733789.1\|2755143_2757045_-	hypothetical protein	A0A2H4JFP5	uncultured_Caudovirales_phage	1.8e-32	45.1
WP_166733790.1\|2757288_2758440_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	4.4e-42	36.0
WP_166732628.1\|2759731_2760040_-	hypothetical protein	NA	NA	NA	NA
WP_166733791.1\|2760186_2760513_-	hypothetical protein	NA	NA	NA	NA
WP_166733792.1\|2760831_2761239_-	hypothetical protein	NA	NA	NA	NA
WP_166733793.1\|2761241_2766263_-	RHS repeat protein	A0A2H4JFP5	uncultured_Caudovirales_phage	1.1e-33	40.2
WP_166733794.1\|2766273_2767059_-	DUF4123 domain-containing protein	NA	NA	NA	NA
WP_166733795.1\|2767172_2769467_-	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_166733796.1\|2769487_2771233_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_059199175.1\|2771251_2772280_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_166733797.1\|2772276_2774019_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_166733798.1\|2774043_2775504_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_059199172.1\|2775594_2775858_-	PAAR domain-containing protein	E5E3Y0	Burkholderia_phage	7.0e-12	47.7
WP_021807336.1\|2776305_2776779_+	hypothetical protein	NA	NA	NA	NA
WP_039996142.1\|2777047_2777641_+\|integrase	tyrosine-type recombinase/integrase	A0A2L1IV36	Escherichia_phage	8.3e-53	50.5
2780949:2780963	attR	NA	NA	NA	NA

DBSCAN-SWA_5

3599691 : 3654312

uncultured_Mediterranean_phage(28.57%)

tRNA,tail,integrase,transposase

attL 3610514:3610537|attR 3653081:3653104

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_166734129.1\|3599691_3600738_+\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_166734130.1\|3601129_3601855_+	fimbrial protein	NA	NA	NA	NA
WP_166734131.1\|3601937_3602435_+	fimbrial protein	NA	NA	NA	NA
WP_166735143.1\|3602557_3605215_+	fimbrial protein	NA	NA	NA	NA
WP_166734132.1\|3605225_3606410_+\|tail	phage tail protein	NA	NA	NA	NA
WP_059199807.1\|3606705_3607467_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	4.5e-67	52.8
WP_024484091.1\|3607460_3608087_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	8.2e-35	50.0
WP_166734133.1\|3608354_3609338_+	murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	1.5e-06	36.4
WP_024484093.1\|3609392_3610391_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	4.7e-32	37.3
3610514:3610537	attL	NA	NA	NA	NA
WP_166734134.1\|3610868_3613424_-	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	5.6e-29	20.8
WP_166734135.1\|3613502_3613703_-	hypothetical protein	NA	NA	NA	NA
WP_166734136.1\|3613865_3614639_+	hypothetical protein	NA	NA	NA	NA
WP_166734137.1\|3614944_3615580_-	type 1 fimbrial protein	NA	NA	NA	NA
WP_166734138.1\|3616228_3616855_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_166734139.1\|3617672_3618239_+	response regulator transcription factor	NA	NA	NA	NA
WP_166734140.1\|3618648_3619140_+	hypothetical protein	NA	NA	NA	NA
WP_166734141.1\|3619069_3619222_+	response regulator transcription factor	NA	NA	NA	NA
WP_166734142.1\|3619325_3619820_-	hypothetical protein	NA	NA	NA	NA
WP_166734143.1\|3619803_3620586_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_166734144.1\|3621162_3621654_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_166734145.1\|3621719_3622247_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_166734146.1\|3622331_3624848_+	outer membrane usher protein	NA	NA	NA	NA
WP_166735144.1\|3624961_3625738_+	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_166734147.1\|3625780_3626383_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_166734148.1\|3626391_3626904_+	MrfE protein	NA	NA	NA	NA
WP_166734149.1\|3626918_3627413_+	fimbrial protein	NA	NA	NA	NA
WP_166734150.1\|3627426_3627924_+	fimbrial protein	NA	NA	NA	NA
WP_166734151.1\|3627920_3628439_+	fimbrial protein	NA	NA	NA	NA
WP_166734152.1\|3628454_3628988_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_166734153.1\|3629033_3629888_+\|transposase	transposase	NA	NA	NA	NA
WP_166734154.1\|3630029_3630950_+	hypothetical protein	NA	NA	NA	NA
WP_166732741.1\|3631318_3632473_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_166734155.1\|3632623_3633100_-	hypothetical protein	NA	NA	NA	NA
WP_166734156.1\|3633096_3633891_-	hypothetical protein	NA	NA	NA	NA
WP_166734157.1\|3634285_3634957_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_166734158.1\|3635115_3635658_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_166735145.1\|3635773_3636277_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_166734159.1\|3636294_3638829_+	outer membrane usher protein	NA	NA	NA	NA
WP_166734160.1\|3638842_3639598_+	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_166734161.1\|3639621_3640107_+	fimbrial protein	NA	NA	NA	NA
WP_166735146.1\|3640139_3640604_+	fimbrial protein	NA	NA	NA	NA
WP_166734162.1\|3640613_3641144_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_166734163.1\|3641210_3642014_+	hypothetical protein	NA	NA	NA	NA
WP_166734164.1\|3642603_3643275_+\|integrase	tyrosine-type recombinase/integrase	A0A2L1IV36	Escherichia_phage	1.8e-48	54.0
WP_071682398.1\|3643680_3644229_+	fimbrial protein	NA	NA	NA	NA
WP_166734165.1\|3644307_3644850_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_071682396.1\|3644960_3645644_+	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_166734166.1\|3645726_3648366_+	fimbrial biogenesis usher protein	NA	NA	NA	NA
WP_166734167.1\|3648388_3648916_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_137751119.1\|3648937_3649438_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_071682393.1\|3649451_3650369_+	fimbrial protein	NA	NA	NA	NA
WP_166734168.1\|3650435_3651101_+	response regulator transcription factor	NA	NA	NA	NA
WP_166734169.1\|3651097_3651712_+	response regulator transcription factor	NA	NA	NA	NA
WP_071682390.1\|3651823_3652399_-\|integrase	tyrosine-type recombinase/integrase	A0A2L1IV36	Escherichia_phage	1.3e-47	52.4
WP_024530435.1\|3652829_3653081_+	DinI-like family protein	NA	NA	NA	NA
WP_166733867.1\|3653157_3654312_-\|transposase	IS481 family transposase	NA	NA	NA	NA
3653081:3653104	attR	NA	NA	NA	NA

DBSCAN-SWA_6

4017992 : 4060518

Salmonella_phage(40.48%)

head,terminase,tRNA,tail,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_166734325.1\|4017992_4018214_-	hypothetical protein	A0A286S2B3	Klebsiella_phage	4.1e-13	47.3
WP_166734326.1\|4018210_4018414_-	hypothetical protein	NA	NA	NA	NA
WP_166734327.1\|4018432_4018795_-	hypothetical protein	NA	NA	NA	NA
WP_166735155.1\|4018791_4019163_-	restriction alleviation protein, Lar family	NA	NA	NA	NA
WP_166734328.1\|4019192_4019939_-	ORF6N domain-containing protein	A0A1B0V7F1	Salmonella_phage	1.0e-23	61.1
WP_166734329.1\|4019950_4020448_-	hypothetical protein	NA	NA	NA	NA
WP_166734330.1\|4020444_4020753_-	ANR family transcriptional regulator	NA	NA	NA	NA
WP_166734331.1\|4020749_4021220_-	hypothetical protein	A0A1B0VMJ8	Pseudomonas_phage	8.1e-11	33.1
WP_166734332.1\|4021219_4021588_-	hypothetical protein	NA	NA	NA	NA
WP_166734333.1\|4021698_4022010_-	hypothetical protein	NA	NA	NA	NA
WP_166734334.1\|4022009_4022231_-	hypothetical protein	NA	NA	NA	NA
WP_166734335.1\|4022227_4022413_-	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
WP_166734336.1\|4022456_4022834_-	hypothetical protein	NA	NA	NA	NA
WP_166734337.1\|4022973_4023630_-	LexA family transcriptional regulator	K7PM82	Enterobacteria_phage	7.0e-69	60.8
WP_166734338.1\|4023735_4023957_+	helix-turn-helix transcriptional regulator	A0A220NRR8	Escherichia_phage	7.4e-15	55.1
WP_166734339.1\|4023949_4024282_+	hypothetical protein	A0A1B5FPB9	Escherichia_phage	4.0e-20	50.5
WP_115158648.1\|4024604_4025099_+	hypothetical protein	NA	NA	NA	NA
WP_166734340.1\|4025091_4026597_+	DEAD/DEAH box helicase family protein	A0A286N2P9	Klebsiella_phage	5.9e-204	65.3
WP_166734341.1\|4026593_4027574_+	DNA primase	A0A286N2Q0	Klebsiella_phage	3.1e-105	57.5
WP_161739636.1\|4027573_4027762_+	hypothetical protein	NA	NA	NA	NA
WP_115158652.1\|4027754_4028186_+	antitermination protein	Q8W638	Enterobacteria_phage	9.6e-43	70.0
WP_166734342.1\|4029486_4029834_+\|holin	phage holin, lambda family	Q8HA87	Salmonella_phage	6.0e-27	60.7
WP_166734343.1\|4029820_4030216_+	M15 family metallopeptidase	A0A0A7NQ86	Enterobacteria_phage	5.2e-51	71.5
WP_166734344.1\|4030212_4030572_+	DUF2570 family protein	NA	NA	NA	NA
WP_166735156.1\|4030591_4030768_+	lytic transglycosylase	Q776X1	Haemophilus_phage	9.7e-10	55.1
WP_166734345.1\|4030867_4031164_+	hypothetical protein	NA	NA	NA	NA
WP_166734346.1\|4031532_4032144_+\|terminase	terminase small subunit	A0A2R3UAN5	Myoviridae_environmental_samples	1.0e-37	45.9
WP_166734347.1\|4032364_4033987_+	TerL protein	A0A0M5M1R6	Salmonella_phage	6.1e-308	93.9
WP_166734348.1\|4033986_4035453_+	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	2.5e-244	86.7
WP_166734349.1\|4035523_4036057_+	hypothetical protein	A0A0M4REK0	Salmonella_phage	5.5e-48	57.0
WP_166734350.1\|4036318_4037551_+	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	6.1e-191	84.6
WP_166734351.1\|4037555_4038053_+	hypothetical protein	A0A0M4QWZ6	Salmonella_phage	2.3e-72	82.4
WP_166734352.1\|4038064_4039006_+	DUF2184 domain-containing protein	A0A0M3ULD3	Salmonella_phage	1.5e-168	93.3
WP_166734353.1\|4039047_4039446_+	hypothetical protein	A0A0M4RTX5	Salmonella_phage	3.2e-16	51.7
WP_166734354.1\|4039426_4039840_+	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	7.8e-50	72.4
WP_166734355.1\|4039836_4040343_+	hypothetical protein	A0A0M4S631	Salmonella_phage	3.2e-21	38.9
WP_166734356.1\|4040342_4040729_+\|head,tail	head-tail adaptor	A0A2H4J1A4	uncultured_Caudovirales_phage	5.2e-48	77.4
WP_166734357.1\|4040706_4041264_+	hypothetical protein	A0A2H4J1A0	uncultured_Caudovirales_phage	1.3e-52	55.2
WP_166734358.1\|4041266_4042748_+	DUF3383 domain-containing protein	A0A0P0I492	Acinetobacter_phage	1.2e-137	53.3
WP_166734359.1\|4042757_4043201_+	DUF3277 family protein	A0A2H4J619	uncultured_Caudovirales_phage	3.4e-51	67.6
WP_166734360.1\|4043211_4043655_+	hypothetical protein	A0A2H4J2V6	uncultured_Caudovirales_phage	1.8e-23	44.9
WP_166734361.1\|4043832_4045866_+	lytic transglycosylase	A0A0M4REK7	Salmonella_phage	3.5e-167	46.2
WP_115158671.1\|4045865_4046459_+	hypothetical protein	A0A0M3ULD5	Salmonella_phage	7.0e-52	55.6
WP_166734362.1\|4046448_4046760_+	hypothetical protein	A0A0M4R5B7	Salmonella_phage	1.3e-17	47.4
WP_166734363.1\|4046791_4047739_+	hypothetical protein	A0A2H4J1B2	uncultured_Caudovirales_phage	1.0e-73	42.4
WP_166734364.1\|4047735_4048491_+	translation initiation factor IF-2	A0A0M5M1K7	Salmonella_phage	1.6e-61	53.0
WP_166734365.1\|4048487_4048841_+	hypothetical protein	A0A2H4J629	uncultured_Caudovirales_phage	1.2e-38	65.0
WP_166735157.1\|4048837_4050031_+	hypothetical protein	A0A0M4RD32	Salmonella_phage	7.1e-120	57.1
WP_115158676.1\|4050027_4050702_+	DUF2612 domain-containing protein	A9YX13	Burkholderia_phage	4.2e-53	48.8
WP_166734366.1\|4050694_4051660_+	hypothetical protein	A9YX14	Burkholderia_phage	3.3e-14	48.9
WP_166734367.1\|4051700_4052723_-	acyltransferase family protein	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	1.6e-19	30.6
WP_166734368.1\|4052831_4054190_+	hypothetical protein	A0A1S6KUV1	Providencia_phage	9.2e-39	38.4
WP_166735158.1\|4054245_4054587_-	hypothetical protein	NA	NA	NA	NA
WP_166734369.1\|4054667_4055144_-	SocA family protein	D0UIM3	Aggregatibacter_phage	3.9e-21	39.9
WP_166735159.1\|4055350_4055587_-	DinI-like family protein	H6WRY5	Salmonella_phage	7.4e-13	48.7
WP_166734370.1\|4055607_4055850_-	DinI family protein	K7PKR6	Enterobacteria_phage	9.2e-27	74.7
WP_021805445.1\|4056152_4056632_-\|tRNA	Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK	NA	NA	NA	NA
WP_166734371.1\|4056853_4057657_-	conjugal transfer protein TraB	NA	NA	NA	NA
WP_166734372.1\|4057806_4060518_-	copper-exporting P-type ATPase CopA	A0A218MNH6	uncultured_virus	8.1e-111	36.6

DBSCAN-SWA_7

4563103 : 4578155

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_166735173.1\|4563103_4564528_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	6.4e-59	31.2
WP_166734604.1\|4564542_4565910_+	phosphomannomutase CpsG	A0A127AWJ1	Bacillus_phage	4.7e-35	27.5
WP_166734605.1\|4567022_4568087_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	4.6e-102	54.6
WP_021805026.1\|4568106_4568976_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.2e-110	66.7
WP_021805025.1\|4568977_4569514_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.6e-63	62.6
WP_021805024.1\|4569510_4570371_+	dTDP-4-dehydrorhamnose reductase	I7HXC9	Enterobacteria_phage	4.6e-44	40.0
WP_166734606.1\|4570576_4571590_+	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	2.6e-78	45.3
WP_021805022.1\|4571816_4572881_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	4.6e-102	53.1
WP_021805021.1\|4572895_4573765_+	glucose-1-phosphate thymidylyltransferase RfbA	A0A291LA53	Escherichia_phage	3.6e-113	69.1
WP_021805020.1\|4573766_4574303_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	6.1e-63	63.1
WP_115159854.1\|4574299_4575166_+	dTDP-4-dehydrorhamnose reductase	A0A1D7XFA3	Escherichia_phage	1.3e-43	42.7
WP_021805018.1\|4575982_4576804_+	ABC transporter permease	NA	NA	NA	NA
WP_166734607.1\|4576793_4578155_+	ABC transporter ATP-binding protein	W5SAS9	Pithovirus	2.6e-09	26.2

DBSCAN-SWA_8

4670841 : 4679653

Escherichia_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_115159637.1\|4670841_4672134_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.4e-92	52.4
WP_166734647.1\|4672395_4674846_+	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	1.1e-218	49.6
WP_166734648.1\|4675055_4677506_+	molybdopterin-dependent oxidoreductase	A0A077SK27	Escherichia_phage	9.8e-225	50.6
WP_021804936.1\|4677516_4678134_+	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	1.9e-76	59.1
WP_166734649.1\|4678135_4678996_+	dimethyl sulfoxide reductase anchor subunit	A0A077SK59	Escherichia_phage	5.3e-24	33.5
WP_021804934.1\|4679044_4679653_+	Tat proofreading chaperone DmsD	A0A077SLS7	Escherichia_phage	7.5e-25	33.8

DBSCAN-SWA_9

4749312 : 4814308

uncultured_Caudovirales_phage(28.57%)

protease,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_166734675.1\|4749312_4751082_-\|protease	Lon protease family protein	NA	NA	NA	NA
WP_037375184.1\|4751269_4751728_+	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_166734676.1\|4751793_4752876_-	porin OmpA	NA	NA	NA	NA
WP_166734677.1\|4753235_4753742_-	cell division inhibitor SulA	NA	NA	NA	NA
WP_166734678.1\|4753974_4754631_+	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA
WP_166734679.1\|4754635_4756771_-	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_021804873.1\|4756805_4757249_-	YccF domain-containing protein	NA	NA	NA	NA
WP_021804872.1\|4757404_4759459_+	DNA helicase IV	A7KV33	Bacillus_phage	8.8e-17	25.4
WP_021804871.1\|4759492_4759951_-	methylglyoxal synthase	NA	NA	NA	NA
WP_166734680.1\|4760078_4760738_-	DUF2057 family protein	NA	NA	NA	NA
WP_021182047.1\|4760976_4761390_+	CoA-binding protein	NA	NA	NA	NA
WP_021182046.1\|4761488_4761806_-	heat shock protein HspQ	NA	NA	NA	NA
WP_021804868.1\|4761867_4763058_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA
WP_021181988.1\|4763150_4763429_+	acylphosphatase	NA	NA	NA	NA
WP_024485653.1\|4763436_4763766_-	sulfurtransferase TusE	A0A2H4J8B6	uncultured_Caudovirales_phage	1.4e-22	51.9
WP_021181987.1\|4763875_4764535_-\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	2.4e-48	53.5
WP_166734681.1\|4765226_4766102_+	polyphosphate kinase 2	NA	NA	NA	NA
WP_166734682.1\|4766650_4767895_+	amino acid permease	NA	NA	NA	NA
WP_166734683.1\|4768332_4769295_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_021804858.1\|4769375_4770278_+	ABC transporter permease	NA	NA	NA	NA
WP_021178434.1\|4770274_4771069_+	ABC transporter ATP-binding protein	A0A1V0SE00	Indivirus	4.9e-08	24.6
WP_166734684.1\|4771233_4772832_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_059200428.1\|4773355_4774522_+	MFS transporter	NA	NA	NA	NA
WP_059200429.1\|4774590_4775169_+	hypothetical protein	A0A223W000	Agrobacterium_phage	1.8e-23	34.7
WP_166734685.1\|4775230_4776499_-	O-antigen ligase family protein	NA	NA	NA	NA
WP_021804855.1\|4776479_4777649_-	putative lipopolysaccharide heptosyltransferase III	NA	NA	NA	NA
WP_166734686.1\|4777929_4780074_-	formate dehydrogenase subunit alpha	A0A077SK27	Escherichia_phage	4.5e-24	24.5
WP_166734687.1\|4780245_4780698_-	hydrogenase maturation peptidase HycI	NA	NA	NA	NA
WP_021804853.1\|4780694_4781111_-	HycH family protein	NA	NA	NA	NA
WP_115158287.1\|4781100_4781886_-	NADH-quinone oxidoreductase subunit B family protein	NA	NA	NA	NA
WP_166734688.1\|4781887_4782433_-	hydrogenase 4 subunit H	NA	NA	NA	NA
WP_166734689.1\|4782443_4784180_-	hydrogenase large subunit	NA	NA	NA	NA
WP_166735177.1\|4784176_4785760_-	hydrogenase 4 subunit F	NA	NA	NA	NA
WP_166734690.1\|4785764_4786415_-	hydrogenase 4 membrane subunit	NA	NA	NA	NA
WP_166734691.1\|4786426_4787884_-	hydrogenase 4 subunit D	NA	NA	NA	NA
WP_166734692.1\|4787901_4788852_-	respiratory chain complex I subunit 1 family protein	NA	NA	NA	NA
WP_166734693.1\|4788864_4790880_-	hydrogenase 4 subunit B	NA	NA	NA	NA
WP_166734694.1\|4790882_4791503_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA
WP_059200440.1\|4791534_4792077_-	electron transport protein HydN	NA	NA	NA	NA
WP_166734695.1\|4794036_4794381_+	hydrogenase maturation nickel metallochaperone HypA	NA	NA	NA	NA
WP_059200441.1\|4794396_4794690_+	HypC/HybG/HupF family hydrogenase formation chaperone	NA	NA	NA	NA
WP_166734696.1\|4794829_4796896_+	formate hydrogenlyase transcriptional activator FlhA	NA	NA	NA	NA
WP_166734697.1\|4797352_4797514_+	hypothetical protein	NA	NA	NA	NA
WP_166734698.1\|4797750_4798329_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_166734699.1\|4798382_4798883_+	hypothetical protein	NA	NA	NA	NA
WP_166734700.1\|4798971_4802229_+	response regulator	Q8QKV7	Ectocarpus_siliculosus_virus	3.8e-38	27.3
WP_166734701.1\|4802246_4802897_+	response regulator transcription factor	NA	NA	NA	NA
WP_166734702.1\|4803275_4804025_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_166734703.1\|4804102_4804513_+	hypothetical protein	NA	NA	NA	NA
WP_021178406.1\|4804563_4805082_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_166734704.1\|4805842_4806340_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_166734705.1\|4806367_4807849_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_021178403.1\|4807855_4808296_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_021804825.1\|4808295_4810110_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_021804824.1\|4810073_4811126_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_166734706.1\|4811151_4812456_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_021178399.1\|4812452_4812959_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_024486774.1\|4812961_4814308_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP050172

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3408 : 66117

Escherichia_phage(26.67%)

integrase,transposase

attL 2126:2139|attR 23777:23790

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2126:2139	attL	NA	NA	NA	NA
WP_166735280.1\|3408_4212_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	1.0e-29	57.9
WP_166735209.1\|4278_4626_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_161713053.1\|4609_4879_-	hypothetical protein	NA	NA	NA	NA
WP_166735210.1\|5037_5244_-	hypothetical protein	NA	NA	NA	NA
WP_166735211.1\|5431_5530_-	hypothetical protein	NA	NA	NA	NA
WP_037376617.1\|5847_6135_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A2H4JBF4	uncultured_Caudovirales_phage	3.2e-26	60.6
WP_004966044.1\|6124_6367_-	type II toxin-antitoxin system RelB/DinJ family antitoxin	A0A2H4JBG1	uncultured_Caudovirales_phage	1.4e-14	51.2
WP_166735281.1\|6683_7877_+	ParA family protein	A0A077SL49	Escherichia_phage	1.5e-181	78.5
WP_166735212.1\|7885_8857_+	ParB/RepB/Spo0J family partition protein	Q38420	Escherichia_phage	1.5e-80	51.4
WP_166735213.1\|9923_10475_+	single-stranded DNA-binding protein	A0A0A0P1Q9	Enterobacteria_phage	2.7e-50	76.4
WP_166735214.1\|10452_10767_+	DUF905 family protein	NA	NA	NA	NA
WP_166735215.1\|10830_12864_+	ParB/RepB/Spo0J family partition protein	A0A1C9EHW0	Gordonia_phage	1.8e-06	26.4
WP_166735216.1\|12903_13350_+	conjugation system SOS inhibitor PsiB	NA	NA	NA	NA
WP_166735217.1\|13346_14069_+	plasmid SOS inhibition protein A	NA	NA	NA	NA
WP_166735282.1\|14071_14386_+	theronine dehydrogenase	I3UM57	Rhodobacter_phage	8.9e-14	36.9
WP_166735218.1\|14428_14695_+	hypothetical protein	NA	NA	NA	NA
WP_166735219.1\|15362_15818_+	hypothetical protein	NA	NA	NA	NA
WP_166735220.1\|15865_16216_+	hypothetical protein	NA	NA	NA	NA
WP_166735221.1\|16306_16453_+	succinate dehydrogenase flavoprotein subunit	NA	NA	NA	NA
WP_166735222.1\|16498_17302_+	SAM-dependent DNA methyltransferase	H7BVT3	unidentified_phage	2.2e-16	39.9
WP_166735223.1\|18926_19382_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA
WP_166735224.1\|19803_20199_+	relaxosome protein TraM	NA	NA	NA	NA
WP_166735225.1\|20435_21215_-	response regulator	NA	NA	NA	NA
WP_074423335.1\|21474_21669_+	TraY domain-containing protein	NA	NA	NA	NA
WP_083196351.1\|21859_22246_+	TraY domain-containing protein	NA	NA	NA	NA
WP_166735226.1\|22310_22661_+	type IV conjugative transfer system pilin TraA	NA	NA	NA	NA
WP_065684418.1\|22810_23116_+	type IV conjugative transfer system protein TraL	NA	NA	NA	NA
WP_166735227.1\|23130_23697_+	type IV conjugative transfer system protein TraE	NA	NA	NA	NA
WP_166735228.1\|23683_24427_+	type-F conjugative transfer system secretin TraK	NA	NA	NA	NA
23777:23790	attR	NA	NA	NA	NA
WP_166735229.1\|24413_25808_+	conjugal transfer protein TraB	NA	NA	NA	NA
WP_166735230.1\|26266_27292_+	DUF3472 domain-containing protein	NA	NA	NA	NA
WP_166735231.1\|27662_28277_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	3.6e-35	49.0
WP_166735232.1\|28436_31466_+\|transposase	Tn3 family transposase	NA	NA	NA	NA
WP_166735233.1\|32245_32482_-	hypothetical protein	NA	NA	NA	NA
WP_166735234.1\|33494_35432_+	hypothetical protein	NA	NA	NA	NA
WP_166735235.1\|35682_36306_+	recombinase family protein	A0A1W5LU24	Ralstonia_phage	3.8e-08	30.7
WP_036419632.1\|39397_39565_+\|transposase	Tn3 family transposase	NA	NA	NA	NA
WP_166735283.1\|39600_42888_+	AAA family ATPase	NA	NA	NA	NA
WP_166735236.1\|42889_43627_+	type-F conjugative transfer system pilin acetylase TraX	NA	NA	NA	NA
WP_166735237.1\|43695_44412_+	fertility inhibition protein FinO	NA	NA	NA	NA
WP_166735238.1\|45126_45378_+	replication regulatory protein RepA	NA	NA	NA	NA
WP_166735284.1\|45809_46748_+	Replication protein	NA	NA	NA	NA
WP_074032256.1\|47735_47954_+	type II toxin-antitoxin system antitoxin CcdA	NA	NA	NA	NA
WP_166735239.1\|47955_48261_+	type II toxin-antitoxin system toxin CcdB	NA	NA	NA	NA
WP_166735240.1\|49905_52926_+	autotransporter outer membrane beta-barrel domain-containing protein	A0A2L0UZX3	Agrobacterium_phage	3.8e-08	26.6
WP_166735285.1\|53538_54762_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_166735241.1\|54941_55346_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_166735242.1\|56335_57217_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_166735243.1\|58161_58857_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	6.1e-39	42.1
WP_166735244.1\|59090_61742_-	peptidase M66	NA	NA	NA	NA
WP_166735245.1\|62153_63203_-	metallophosphoesterase	NA	NA	NA	NA
WP_166735246.1\|65122_65818_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	8.0e-39	41.1
WP_166735286.1\|65778_66117_+\|transposase	transposase	S5WIU1	Leptospira_phage	3.7e-05	45.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP050171

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP050172

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection