CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP039734	Sulfurospirillum sp. ACSDCE chromosome, complete genome	3 crisprs	cas3,DEDDh,cas2,cas1,WYL,csx20,csx1,csm3gr7,csx19,csx10gr5,cas10,cas6,cas4,csa3	0	9	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP039734_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP039734_1

599208-600003

TypeIII

Consensus_repeat	Method
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	CRISPRCasFinder
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	CRT
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	PILER-CR

11 spacers

cas2,cas1,WYL,csx20

The CRISPR arrays of NZ_CP039734_1

>merge|NZ_CP039734|1|599208-600003|CRISPRCasFinder,CRT,PILER-CR
AAGCAAATCCCCTTATAATCGGGTCAGTATGTAATCAAATCAAAAAGTAGAAAAAGCTATGGTTTATCCGTTTCAATCCCCTTATAATCGGGTCAGTATGTAATAATCTGCTGATGTTCTTTTTGAAGAACAAGAAATGTTTCAATCCCCTTATAATCGGGTCAGTATGTAATCAGAATTTATGGGTTACAGTAACCACAATACTATGTTTCAATCCCCTTATAATCGGGTCAGTATGTAATTGGTGATGCTTGGGATTGCACGCTTGATGAGATGTTTCAATCCCCTTATAATCGGGTCAGTATGTAATTCATTCAGAAAACTTAAAAGATTCTGATGGTTGGGTTTCAATCCCCTTATAATCGGGTCAGTATGTAATTAAAATTTATTAAAAGGAAATAAAATGATTAAAGTTTCAATCCCCTTATAATCGGGTCAGTATGTAATTCATGAACCTTTTCCTAAGCTAAAAATTCTTCTAGTTTCAATCCCCTTATAATCGGGTCAGTATGTAATAAAGTAAATGTAAAAGAAGATGGTAGAAAATCTCAGTTTCAATCCCCTTATAATCGGGTCAGTATGTAATCGAAAATGCGTCTAGTTATTTTAGCTGTTTTGACGTTTCAATCCCCTTATAATCGGGTCAGTATGTAATATCATTAAATTATTAAAAGGAGTTCCAATGTTATCTTGTTTCAATCCCCTTATAATCGGGTCAGTATGTAATAGAAACATTACAATGGTTTATTACAAATCAATCAGTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT

>NZ_CP039734|1|1|599208-600003|CRISPRCasFinder
AAGCAAATCCCCTTATAATCGGGTCAGTATGTAAT	CAAATCAAAAAGTAGAAAAAGCTATGGTTTATCC
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	AATCTGCTGATGTTCTTTTTGAAGAACAAGAAAT
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	CAGAATTTATGGGTTACAGTAACCACAATACTAT
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	TGGTGATGCTTGGGATTGCACGCTTGATGAGAT
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	TCATTCAGAAAACTTAAAAGATTCTGATGGTTGG
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	TAAAATTTATTAAAAGGAAATAAAATGATTAAA
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	TCATGAACCTTTTCCTAAGCTAAAAATTCTTCTA
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	AAAGTAAATGTAAAAGAAGATGGTAGAAAATCTCA
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	CGAAAATGCGTCTAGTTATTTTAGCTGTTTTGAC
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	ATCATTAAATTATTAAAAGGAGTTCCAATGTTATCTT
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	AGAAACATTACAATGGTTTATTACAAATCAATCA
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT

>NZ_CP039734|1|1|599208-600003|CRT
AAGCAAATCCCCTTATAATCGGGTCAGTATGTAAT	CAAATCAAAAAGTAGAAAAAGCTATGGTTTATCC
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	AATCTGCTGATGTTCTTTTTGAAGAACAAGAAAT
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	CAGAATTTATGGGTTACAGTAACCACAATACTAT
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	TGGTGATGCTTGGGATTGCACGCTTGATGAGAT
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	TCATTCAGAAAACTTAAAAGATTCTGATGGTTGG
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	TAAAATTTATTAAAAGGAAATAAAATGATTAAA
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	TCATGAACCTTTTCCTAAGCTAAAAATTCTTCTA
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	AAAGTAAATGTAAAAGAAGATGGTAGAAAATCTCA
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	CGAAAATGCGTCTAGTTATTTTAGCTGTTTTGAC
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	ATCATTAAATTATTAAAAGGAGTTCCAATGTTATCTT
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	AGAAACATTACAATGGTTTATTACAAATCAATCA
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT

>NZ_CP039734|1|1|599277-600003|PILER-CR
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	AATCTGCTGATGTTCTTTTTGAAGAACAAGAAAT
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	CAGAATTTATGGGTTACAGTAACCACAATACTAT
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	TGGTGATGCTTGGGATTGCACGCTTGATGAGAT
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	TCATTCAGAAAACTTAAAAGATTCTGATGGTTGG
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	TAAAATTTATTAAAAGGAAATAAAATGATTAAA
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	TCATGAACCTTTTCCTAAGCTAAAAATTCTTCTA
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	AAAGTAAATGTAAAAGAAGATGGTAGAAAATCTCA
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	CGAAAATGCGTCTAGTTATTTTAGCTGTTTTGAC
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	ATCATTAAATTATTAAAAGGAGTTCCAATGTTATCTT
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	AGAAACATTACAATGGTTTATTACAAATCAATCA
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP039734.1\|WP_167749316.1\|600190_600457_-\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|378256
NZ_CP039734.1\|WP_167749314.1\|597336_597561_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NZ_CP039734.1\|WP_167749313.1\|596558_597128_-\|aminodeoxychorismate/anthranilate-synthase-component-II	unknown	unknown	gnl\|CDD\|235552
NZ_CP039734.1\|WP_167749309.1\|582017_582410_-\|thioredoxin-fold-domain-containing-protein	unknown	unknown	gnl\|CDD\|239249
NZ_CP039734.1\|WP_167749312.1\|595371_596562_-\|glycosyltransferase-family-39-protein	unknown	unknown	gnl\|CDD\|379080
NZ_CP039734.1\|WP_167749321.1\|603665_603935_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039734.1\|WP_167749308.1\|581146_582025_+\|nucleoside-recognition-protein	unknown	unknown	unknown
NZ_CP039734.1\|WP_167749323.1\|604508_605513_-\|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
NZ_CP039734.1\|WP_167749320.1\|603477_603669_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039734.1\|WP_167749319.1\|601531_602644_+\|IS21-family-transposase	unknown	unknown	gnl\|CDD\|226950
NZ_CP039734.1\|WP_167749322.1\|603924_604176_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039734.1\|WP_167749317.1\|600453_600669_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039734.1\|WP_167749315.1\|598290_598785_-\|porin-family-protein	unknown	unknown	gnl\|CDD\|379226
NZ_CP039734.1\|WP_167749324.1\|605512_605896_-\|hypothetical-protein	csx20	cls000023_csx20_CAS-I:CAS-III	unknown
NZ_CP039734.1\|WP_025344704.1\|602634_603453_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|181681
NZ_CP039734.1\|WP_167749310.1\|582406_583297_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP039734.1\|WP_167749307.1\|580083_580623_+\|antirestriction-protein-ArdA	unknown	unknown	gnl\|CDD\|377800
NZ_CP039734.1\|WP_167749318.1\|600677_601412_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NZ_CP039734.1\|WP_167749311.1\|594687_595359_-\|type-II-secretion-system-protein	unknown	unknown	gnl\|CDD\|225076
NZ_CP039734.1\|WP_167749306.1\|579513_580014_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP039734.1\|WP_167749316.1\|600190_600457_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|378256	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages.	1.17668e-15
NZ_CP039734.1\|WP_167749314.1\|597336_597561_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	0.00844158
NZ_CP039734.1\|WP_167749313.1\|596558_597128_-\|aminodeoxychorismate/anthranilate-synthase-component-II	gnl\|CDD\|235552	PRK05670, PRK05670, anthranilate synthase component II; Provisional.	3.75225e-120
NZ_CP039734.1\|WP_167749309.1\|582017_582410_-\|thioredoxin-fold-domain-containing-protein	gnl\|CDD\|239249	cd02951, SoxW, SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.	2.31613e-08
NZ_CP039734.1\|WP_167749312.1\|595371_596562_-\|glycosyltransferase-family-39-protein	gnl\|CDD\|379080	pfam13231, PMT_2, Dolichyl-phosphate-mannose-protein mannosyltransferase. This family contains members that are not captured by pfam02366.	2.51989e-07
NZ_CP039734.1\|WP_025344704.1\|602634_603453_+\|ATP-binding-protein	gnl\|CDD\|181681	PRK09183, PRK09183, transposase/IS protein; Provisional.	2.49542e-118
NZ_CP039734.1\|WP_167749323.1\|604508_605513_-\|WYL-domain-containing-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	1.26623e-15
NZ_CP039734.1\|WP_167749315.1\|598290_598785_-\|porin-family-protein	gnl\|CDD\|379226	pfam13505, OMP_b-brl, Outer membrane protein beta-barrel domain. This domain is found in a wide range of outer membrane proteins. This domain assumes a membrane bound beta-barrel fold.	1.86934e-05
NZ_CP039734.1\|WP_167749310.1\|582406_583297_-\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	1.69704e-09
NZ_CP039734.1\|WP_167749307.1\|580083_580623_+\|antirestriction-protein-ArdA	gnl\|CDD\|377800	pfam07275, ArdA, Antirestriction protein (ArdA). This family consists of several bacterial antirestriction (ArdA) proteins. ArdA functions in bacterial conjugation to allow an unmodified plasmid to evade restriction in the recipient bacterium and yet acquire cognate modification.	1.3224e-23
NZ_CP039734.1\|WP_167749318.1\|600677_601412_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	2.08963e-44
NZ_CP039734.1\|WP_167749311.1\|594687_595359_-\|type-II-secretion-system-protein	gnl\|CDD\|225076	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion].	1.55215e-06
NZ_CP039734.1\|WP_167749319.1\|601531_602644_+\|IS21-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.78986e-50

>NZ_CP039734.1|WP_167749315.1|598290_598785_-|porin-family-protein
MTFIQRFLVGGVAIATFSSPIFAEDFYYDLHVGLSHLSINDGGDGANYTIGYGVNRIFDNKVFFGVSFDLETATISDTHIYGLNGDLKLGYNIWDKLNVYAIGGYKLQDLDGTSGYGLGYGAGMEYPITQHIITAIEYKTYHMSRSDYKDYDFDTIGLNLKYRF
>NZ_CP039734.1|WP_167749314.1|597336_597561_-|helix-turn-helix-domain-containing-protein
MDVELLVQKLLEKYGYMLTREEVAEVLNISISTVDRKRKQYPKLFPPFKKIGTGNRAPVKFPVHGVAQYLVQIQ
>NZ_CP039734.1|WP_167749313.1|596558_597128_-|aminodeoxychorismate/anthranilate-synthase-component-II
MVLMIDNYDSFTYNIVQYCLELGADLKVIRNDELSVEEIEALHPEKIIISPGPATPNEAGVSLEVIKYFGGKIPILGICLGHQAIGQAFGGKVVRAKRMMHGKTSITKQLHNSCLFDGLPETFTTTRYHSLTVEQEGLPDVVVPTAYSTDDHEIMALQIKDKQIYGVQFHPESILSEHGHAILNNFLKL
>NZ_CP039734.1|WP_167749312.1|595371_596562_-|glycosyltransferase-family-39-protein
MRERLFLLLILVISSALLTYGAQSISISYDEAYTFFNGNDLVHYLAVYSTQLLGQNDFALRLPFILLHLTSIILLYKIGKLFLKKRIDRIVSVAIYAFLPGVNGVALLVNSGIVVIFFSLLFTYLYLKEWKVASHIVLIICLFVDNSFAIFYIALFVYALMKRKTDLLIVTLILFSASMYLYGFDTGGKPRGYFIDTLGVYAIVFSPLLFLYFVYAMYRILIKEEKNLLWYISFFSLVVSLLLSLRQKLLLEDFAPFVVLSVPLMVKVFFNSYRVRLPAFRKLHTFFFILVLITLFINTMLSFFNKPLYAFMNEPSKHFAINYNIARELANELKARDIHKVITKDDKMALRLKFYNIERGGAYKLMNQKEIEEGFEQIDIAYYGKTVRTFYLYRIN
>NZ_CP039734.1|WP_167749311.1|594687_595359_-|type-II-secretion-system-protein
MKKAFTMLELVFVIVVVGILSYFVSTGFQRNPLREAADQLVSHIRYTQHLAMMDDKFSLTDASWALGRWQLYFSNNTGSDDQWAYTIFSDWKAGHTGNPDMGEVAVNPLNSSQYLTGGTSGTNIIHYSDQSATKELNIGHKYGIKDITFSGGCRSNVKYIHFDYLGRPMNSLSTNPYELPATGWHKLLTTQCKITLCDKDCTDGSAQKVSIAIEAETGYTHIL
>NZ_CP039734.1|WP_167749310.1|582406_583297_-|DMT-family-transporter
MKKNQSKAYFFAISAVLLWSTVASAFKLSLAYFDALNLLLYASFFSLCVFSCAMGYQRKFYILFLYSKKTYFKLALLGLINPFIYYLVLFHAYELLPAQEAQPINYTWALTLTYLSVFILKQKISVYDFLAGLICYFGVLIISTHGDLWGFSFYSLTGVFLALFSTVLWSLYWIYNTKLHVDPLVGLFINFLFGVPAILFYALITSHPLVFNIHGFLGSAYVGIFEMGITFILWLQAMKLSTNTAKIANLIFISPFLSLVFISIFVGEVILFSTYIGLIFIIIGLLLQQRVKKVDR
>NZ_CP039734.1|WP_167749309.1|582017_582410_-|thioredoxin-fold-domain-containing-protein
MKKWICVLIIFLLGTLSLHADFLEAERKKALNEKKLILLSVTKEFCPYCIKMEKDVFENALYRNQIEKKYLHVTINRENPELPQALHVKYFPTNLILSPKDLKIIDDFAGYIEPVSFIELLDEVYEQEFK
>NZ_CP039734.1|WP_167749308.1|581146_582025_+|nucleoside-recognition-protein
MSFSLQRSLQTSLKSSWTILKLIVPIYILADILFYYNLLSYITFIFKPLVALLGLPQETALSIVSGLFLNLYAAIAFAAPLGLSPKEWTVLAVFLGIAHALIVETEIMKRLGISRVYSILLRLCAGLLVGGLTSKLPQSWFSNELSQEAMVPSHPLYHSLSDLLQNSLYESLSLSLKVILLVTTLIFVLDFIKSLHMIEKHSQKVNSGFSILVGVILGITYGAGILIAEYEKGILQKREILFIGTYLMICHAIIEDTLLFVIFGANLWIMVGLRLTFATLIAYLVLKYTKIT
>NZ_CP039734.1|WP_167749307.1|580083_580623_+|antirestriction-protein-ArdA
MLEIFITDLCAYNNGFLIGKWITLPLSGKELYMAISEVLSEGEYACKSDSTHEEIFITDYSWKGKSIFDVEEYDSPWDLNDDVGKLFELSVAQQKAVAFLLSEQFTYDMDDAIQRSDDVIIHENQTLEDVAYCLLQECYELDKLPPIIANHIDYEGVARELDYDGNYFEVDGDVFEYCG
>NZ_CP039734.1|WP_167749306.1|579513_580014_+|hypothetical-protein
MGKVSEHYRQQQETAQAEILEIDYKTGEIILSADAKDTELIKTTKVKAFNLLARTDFVQINGVWEAKRDALIKILSSLPLSYSWHIKEAEMTTAYSKILGVLTITTGSLSRQAESFGICELSELKGNGGMHFMNARAETRALKRAIETLFGSVINYFVVTYMDKAA
>NZ_CP039734.1|WP_167749316.1|600190_600457_-|CRISPR-associated-endonuclease-Cas2
MKNYLLCYDISDKKRLAKLAKLLEKEAFRIQNSIFLLLEPTSHEVDILVQKIEQCIDKAHDDVRLYTIKSNGFHFGSATNLDEPFLLI
>NZ_CP039734.1|WP_167749317.1|600453_600669_-|hypothetical-protein
MLQVNLKGSYIEVSDGVLSQIYGIAQLRSLYLHKEIDLNIATAYELSKYLDIFFINARGMILARYERIQTV
>NZ_CP039734.1|WP_167749318.1|600677_601412_-|CRISPR-associated-endonuclease-Cas1
MTANANVPILYLTKDSKQFALTLPAMAKNGELKALQYANLSNNLSIAKKLLFDKFTTHKASLEHFDITISIDETLTHLALAQSIEEVMGIEGAFAKRYFAHYFSLFEKSLTKGFRSKNPPLDPINAMLSYIYTLSYYAITAKLYMRGFDPSLSYLHTPLRSHFALSSDLLEPLRASINCFVAELFLKQILHAEDFTCKNGVYLKYDTRRQLWTHLKPFMNSLNPQINRQIVMLKKNLEKNDALL
>NZ_CP039734.1|WP_167749319.1|601531_602644_+|IS21-family-transposase
MLKKGEIKMIKKFLAEGFSKSAIARKLGISRETVRRYANLPDDYIPHINRPPVINSVDPYLPHIAKMLETAEQQKSEIPLTVIYEEIKKLGYDGSLRWLQQVILRYELRARAKLDEPIIRFETKPAQQMQVDWVEFPKDNLSAFVATMGYSRASYVEYVNNEKIETLIGCHMNAFAYFGGVPKECLYDNMKTVILSRNDYGKGDHRFNPLFADFAKHCGFSIKVCKPYRAKTKGKVERFNHYLRYNFHNGLRVRLSMKHYTLTLDNANAEVLKWLDNTANKRIHQTTLQMPFELLAQEQLQLLPVPKAYQGIHPKALIESVAKKYSPINSHKDLEKLYIPNRDIQCYDEFIPMVANIILPVGFYGGALWS
>NZ_CP039734.1|WP_025344704.1|602634_603453_+|ATP-binding-protein
MELDTSIDELCKELKLSIIGEKYHDIASMAAKENWQYTQFLEEVLRVEVDNRLGRSKNMLTKLAGFPVIKTLEQFDYTFSVGVNRKQIEELSSLIFVKKYENIILLGESGVGKTHLAIALALKAVQHRYKVRFTTISELLSNANRAKKEKKYDSFLKSIASPSVLVIDEIGYFNMSKEEANHFFQIISKRYEKSSTIFTSNLVFSKWVQVFAGDKIVTTAILDRVLHHSHIINIQGDSYRLKEKKQTGVLHSEIYKFEAKSSNIEGQNQEVV
>NZ_CP039734.1|WP_167749320.1|603477_603669_-|hypothetical-protein
MNTIIIDKDKTEVTYKASKLYTAGQSIPIKLVDMLVITDSVCIDTKSIIQIANVKRSAELVSL
>NZ_CP039734.1|WP_167749321.1|603665_603935_-|hypothetical-protein
MMHNYLLCYDIFNGKRLYKIRKISYPFALGGQKSALEMPLSRKEAKVLLTTLSPHSAPEDKINLIEIEEHPLYIGKSIDVIFEEGMIIL
>NZ_CP039734.1|WP_167749322.1|603924_604176_-|hypothetical-protein
MRQWINFSLVHLTYKIKLYYALHKVFYTLLVLMIYQLLVQESILTLKNGIAICVTLILSMLCEHYYKRYLAQYYEARAQNNDA
>NZ_CP039734.1|WP_167749323.1|604508_605513_-|WYL-domain-containing-protein
MKSTTTEKKIIHIFTLMQKLYEGEELYPQNERILDELGVNERTLRRYLEDIHRLYGDILVSEKKQKYLHGKKVSVYRVPNKEQDISKTLRFFLEESNELSWILTLINENNPRFLKQLSLSEKEAIEQAIAQDKEVFLFKSNPFENLQDEHERLFSQLKIAVKHHEYRTIIYRYDNEETVESVKCLKLIFTNNNWYLAIETANEELRLLRIAFIKEVRYSAKTTYQKHVLAKYRYYFESMQNAMSLQGVALKTAVLKASPSIRRYFLKEMKPFFASQKFIEAPSDGSVIFSVDYTQPIEILPFVKQWLPELEILEPKELRILYKTELQKALAQQG
>NZ_CP039734.1|WP_167749324.1|605512_605896_-|hypothetical-protein
MIKKLFVLMNHEMLPSQISQAHEVLGIEKIISLNDTNWSSFDPDVSSIITALASYKSRLLKDASRGDYLLVQGDFGATYHMVCFAKKLGLTPLYATTKRVATQKMVDGSVVTQREFLHVRFREYEDA

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Crispr_ID: NZ_CP039734_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP039734_2

616302-616815

TypeIII

Consensus_repeat	Method
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	CRT
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	PILER-CR
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAATT	CRISPRCasFinder

7 spacers

cas6,cas10,csm3gr7,csx10gr5,csx19,csx1,csx20

The CRISPR arrays of NZ_CP039734_2

>merge|NZ_CP039734|2|616302-616815|CRT,PILER-CR,CRISPRCasFinder
AGCAATGATGATGTTAAATCGGGTCAATATGTAATGTAACAGAAGTTGAGCATACAACTGCATATTAGTTTCAATCCCCTTATAATCGGGTCAGTATGTAATTGGTTTTTTCTATGCCAATCTCTCTTCTTCTGGTAGTTTCAATCCCCTTATAATCGGGTCAGTATGTAATTTATCAAGGAGAATAAATGATTGTTTCATTTATGGTTTCAATCCCCTTATAATCGGGTCAGTATGTAATTGGATCAGCAGCAGAATAAAACAATCTTTTTAAGGTTTCAATCCCCTTATAATCGGGTCAGTATGTAATCTGAAGCGGTAATGGAGAATTTGGAAGGTCTCTCGTTTCAATCCCCTTATAATCGGGTCAGTATGTAATCAAAAGACGCAAGATCTGCAGAAATTTTAAAAAGTTTCAATCCCCTTATAATCGGGTCAGTATGTAATCAAAATGCTATCGTACAACGATCCAATTGAAGTTTCAATCCCCTTATAATCGGGTCAGTATGTAATA

>NZ_CP039734|2|2|616302-616814|CRT
AGCAATGATGATGTTAAATCGGGTCAATATGTAAT	GTAACAGAAGTTGAGCATACAACTGCATATTA
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	TGGTTTTTTCTATGCCAATCTCTCTTCTTCTGGTA
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	TTATCAAGGAGAATAAATGATTGTTTCATTTATG
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	TGGATCAGCAGCAGAATAAAACAATCTTTTTAAG
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	CTGAAGCGGTAATGGAGAATTTGGAAGGTCTCTC
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	CAAAAGACGCAAGATCTGCAGAAATTTTAAAAA
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	CAAAATGCTATCGTACAACGATCCAATTGAA
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT

>NZ_CP039734|2|2|616369-616814|PILER-CR
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	TGGTTTTTTCTATGCCAATCTCTCTTCTTCTGGTA
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	TTATCAAGGAGAATAAATGATTGTTTCATTTATG
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	TGGATCAGCAGCAGAATAAAACAATCTTTTTAAG
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	CTGAAGCGGTAATGGAGAATTTGGAAGGTCTCTC
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	CAAAAGACGCAAGATCTGCAGAAATTTTAAAAA
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	CAAAATGCTATCGTACAACGATCCAATTGAA
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT

>NZ_CP039734|2|2|616369-616815|CRISPRCasFinder
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAATT	GGTTTTTTCTATGCCAATCTCTCTTCTTCTGGTA
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAATT	TATCAAGGAGAATAAATGATTGTTTCATTTATG
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAATT	GGATCAGCAGCAGAATAAAACAATCTTTTTAAG
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAATC	TGAAGCGGTAATGGAGAATTTGGAAGGTCTCTC
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAATC	AAAAGACGCAAGATCTGCAGAAATTTTAAAAA
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAATC	AAAATGCTATCGTACAACGATCCAATTGAA
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAATA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP039734.1\|WP_167749327.1\|608289_610353_-\|TIGR03986-family-CRISPR-associated-RAMP-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274902
NZ_CP039734.1\|WP_167749326.1\|607510_608293_-\|hypothetical-protein	csx1	pfam09670_csx1_CAS-III	gnl\|CDD\|378236
NZ_CP039734.1\|WP_167749337.1\|620000_621242_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293818
NZ_CP039734.1\|WP_167749325.1\|605965_607495_-\|CRISPR-associated-DxTHG-motif-protein	csx1	cd09732_csx1_CAS-III	gnl\|CDD\|378186
NZ_CP039734.1\|WP_167749328.1\|610349_610736_-\|TIGR04423-family-type-III-CRISPR-associated-protein	csx19	mkCas0121_csx19_CAS-III-D	gnl\|CDD\|275216
NZ_CP039734.1\|WP_167749333.1\|615332_616160_-\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	mkCas0066_cas6_CAS-I:CAS-III	gnl\|CDD\|187890
NZ_CP039734.1\|WP_167749331.1\|613360_613888_-\|CRISPR-associated-protein	csm3gr7	cd09726_csm3gr7_CAS-III-D	gnl\|CDD\|377130
NZ_CP039734.1\|WP_167749329.1\|610732_611989_-\|CRISPR-associated-protein	csm3gr7	cd09726_csm3gr7_CAS-III-D	gnl\|CDD\|377130
NZ_CP039734.1\|WP_167749342.1\|624226_625144_-\|SPFH/Band-7/PHB-domain-protein	unknown	unknown	gnl\|CDD\|223407
NZ_CP039734.1\|WP_167749332.1\|613884_615276_-\|hypothetical-protein	cas10	mkCas0133_cas10_CAS-III	gnl\|CDD\|187810
NZ_CP039734.1\|WP_167749340.1\|622532_622898_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039734.1\|WP_167749324.1\|605512_605896_-\|hypothetical-protein	csx20	cls000023_csx20_CAS-I:CAS-III	unknown
NZ_CP039734.1\|WP_167749330.1\|611978_613364_-\|hypothetical-protein	csx10gr5	cls000748_csx10gr5_CAS-III-D	unknown
NZ_CP039734.1\|WP_167749339.1\|621828_622485_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039734.1\|WP_167749341.1\|622894_623335_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039734.1\|WP_167749336.1\|619148_619403_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039734.1\|WP_167749343.1\|625153_625594_-\|NfeD-family-protein	unknown	unknown	gnl\|CDD\|223961
NZ_CP039734.1\|WP_167749335.1\|618827_619136_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039734.1\|WP_167749338.1\|621258_621807_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039734.1\|WP_167749334.1\|617884_618817_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP039734.1\|WP_167749327.1\|608289_610353_-\|TIGR03986-family-CRISPR-associated-RAMP-protein	gnl\|CDD\|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	8.85889e-83
NZ_CP039734.1\|WP_167749326.1\|607510_608293_-\|hypothetical-protein	gnl\|CDD\|378236	pfam09670, Cas_Cas02710, CRISPR-associated protein (Cas_Cas02710). Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).	1.34417e-05
NZ_CP039734.1\|WP_167749337.1\|620000_621242_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293818	cd07732, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain. Includes functionally uncharacterized Enterococcus faecalis EF2904. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) for which this fold was named perform only a small fraction of the activities included in this superfamily.Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	4.13275e-69
NZ_CP039734.1\|WP_167749325.1\|605965_607495_-\|CRISPR-associated-DxTHG-motif-protein	gnl\|CDD\|378186	pfam09455, Cas_DxTHG, CRISPR-associated (Cas) DxTHG family. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. The family describes Cas proteins of about 400 residues that include the motif [VIL]-D-x-[ST]-H-[GS]. The CRISPR and associated proteins are thought to be involved in the evolution of host resistance. The exact molecular function of this family is currently unknown.	1.45894e-09
NZ_CP039734.1\|WP_167749328.1\|610349_610736_-\|TIGR04423-family-type-III-CRISPR-associated-protein	gnl\|CDD\|275216	TIGR04423, predicted_protein, CRISPR type III-associated protein, TIGR04423 family. Members of this protein family occur only in species with CRISPR systems, in the context of type III systems that resemble type III-A (MTUBE) and III-B (the RAMP module). It occurs in several species of Prevotella, Helicobacter, Campylobacter, and Bacteroides.	3.30856e-13
NZ_CP039734.1\|WP_167749342.1\|624226_625144_-\|SPFH/Band-7/PHB-domain-protein	gnl\|CDD\|223407	COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones].	1.13984e-59
NZ_CP039734.1\|WP_167749333.1\|615332_616160_-\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	gnl\|CDD\|187890	cd09760, Cas6_III, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex.	1.11365e-08
NZ_CP039734.1\|WP_167749331.1\|613360_613888_-\|CRISPR-associated-protein	gnl\|CDD\|377130	pfam03787, RAMPs, RAMP superfamily. The molecular function of these proteins is not yet known. However, they have been identified and called the RAMP (Repair Associated Mysterious Proteins) superfamily. The members of this family have no known function they are around 300 amino acids in length and have several conserved motifs.	1.22404e-10
NZ_CP039734.1\|WP_167749343.1\|625153_625594_-\|NfeD-family-protein	gnl\|CDD\|223961	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones].	9.8045e-08
NZ_CP039734.1\|WP_167749329.1\|610732_611989_-\|CRISPR-associated-protein	gnl\|CDD\|377130	pfam03787, RAMPs, RAMP superfamily. The molecular function of these proteins is not yet known. However, they have been identified and called the RAMP (Repair Associated Mysterious Proteins) superfamily. The members of this family have no known function they are around 300 amino acids in length and have several conserved motifs.	4.65356e-15
NZ_CP039734.1\|WP_167749332.1\|613884_615276_-\|hypothetical-protein	gnl\|CDD\|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	6.73193e-08

>NZ_CP039734.1|WP_167749333.1|615332_616160_-|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6
MLRFIKIDITFSSSFTTSLDFLGSTLRGAFGVALKAVSCLNKTQECQGCFATQNCLYYDFFEIKNRAHAYRFSKPLHENNYNFSLYLFEAACEKLPYVLSALHTMFGRIGVGWNRHLIPIERIVCNGVVVSSGKNFDLSQIVVDVFETKEYFPDITLHFLTPLRIKSNNALLHTTPTLEQILSSIFNRHNELKGIPLAKLPFTPRYKELRTHLRFQELSRYSNRQESTMHLGGMMGTIDYEDVDEHSYALLKLGELLGVGKQTVFGLGEIKVGHQ
>NZ_CP039734.1|WP_167749332.1|613884_615276_-|hypothetical-protein
MAKYLYGASIQGIQEFIFKTNQLQEIIGASEIVRSLEGEFTAFANVADENILLNAAGNIKALFDDEENLRNVVKNFPKKIMQKAYGITLSQAVVDMTKAEYDTYEKAINALEKKLKTQRNKPSIPLDISINLMELAPKTARPVAKIEKKGNDEIRMDVSTAQKYQANPTNKGQLSDLKNSKGKIAIIHADGNGLGALIPTLSNIPVFSKGLDKATHEAYEEAKKVIQSGKIRKIILGGDDMSVICDANDALAFTRTFLEKFETLTYMHTGHKLTACAGIAFCNEKYPFHYAVSLAEALCGATKKHAKNIDKKLAPSSLMFHNIQSSNFQSWEKFIEDELTIRNDHDVIRCDFGPYYVAHVGQPSIEDLIDVVKVYQQEGSPISRLREWLGELSKSHHYAKDLLDRINENSAQNDKKALDTLNLKLKKVHPALGTQTMIIPKDGFDKTLIYDVLQILSVTEAKA
>NZ_CP039734.1|WP_167749331.1|613360_613888_-|CRISPR-associated-protein
MTLRYQLKFYDYWHIGSGLSAGARLDSTVIKDQNDLPYVAGKIIKGLSREMAETLDDADFVNTCFGNNGIEMGKCYFSNAQLLETTAKHICSLNLQSNLYDIIASTKIDETNGVAEDNSLREIEVVVPLELCGEIRDLPENYKEAMTRSLKMIKRMGLNRNRGLGRCEFFVEENQ
>NZ_CP039734.1|WP_167749330.1|611978_613364_-|hypothetical-protein
MKELVFHVEFLSDIVLPATSNTEGKIDHLDFIAGSNFLGMVAQKYDDFKDSFTVFHSGKVRFGDAHILKNEKLPTYKVPYSYVHEKLENERIYNHHTLTPDDFKTLGQLKQLRSGYITKEKELVFIDYSYSQKSAYDKENRKSLDSTMYGYKAIKKGSMWQLVVKVDGSIVPEDEKLMVETLQTSSRLGKSKSAEYGQVKITHLADQARENISEKDLPLNEVILYCNSRVALLDESGNPTYELKHLCEGLKEEQIAYEKTQIRTSTFTPYNTKRQTKDYERVCIKKGSVIVLKDISDAQLKQIQQGVGAYLSEGFGEIIINPSFLMEKGFTFASNEPEEVKKDERQKITQTFTDSTIQFLVNRHNTTIDTLRIAKNVADFIKNHKAEFKNINSSQWGNIRSIASSNQNDFIEKIKGYIGSGSKKWETHQVETLVKAMDHDAINKQTFIKLLAMKMGGKNDE
>NZ_CP039734.1|WP_167749329.1|610732_611989_-|CRISPR-associated-protein
MMNKRYRAHIVIEAQTPLKMGSNAMDFLQDSPVQKDWNGLPMILGTSIAGVLRKEFHGDKAADVFGLNNGSKIIISNALLIADTQGMVYEDLCVQKSDFLKLFENLPLREHTKITSKGTTQKGAKFDEEVVFKGTRFKFSIEFIDNNKELFMELIGLLRSSNFRLGGGSTKGFGKFKMIEIEYGLFDIEKYSSSLNKPLGGDKECNLETITCKDYTPYILQLKPDDFFMFGSGFSDNDADMTPVYEQVIDYEKRALSEKKVLIPASSIKGALAHRTTYHYNKLHGNTIEAGNGVDSVSTLFGAAKNSKQNIDGAKGKILITDCFKNDHGKTKTFDHVSIDRFTGGAMEGALFQEKTVANDEKWYEIELLVHSDIQGKELEAFELALKDVTTGMLPLGGATTKGHGIFLGTITKNGVAL
>NZ_CP039734.1|WP_167749328.1|610349_610736_-|TIGR04423-family-type-III-CRISPR-associated-protein
MKKNQIEIIEYINTLKGYEGYIQMSDAPIKDIWTTPSTITFSPQNGFIYEAHFFNGKDSIAIRQMNDVWFVDETKDVSLIDTQIYDAKQSLKIKMAQVWEEENDLLCENIPVLKLKKVVFAGFAGDRK
>NZ_CP039734.1|WP_167749327.1|608289_610353_-|TIGR03986-family-CRISPR-associated-RAMP-protein
MITAPYNFVPLNKEVFYPSWSEDVSHDIPFEDSESGEIDITITAKSPIFIRNHSDERDKPSEEFCQYNGEYYIPSTTVKGMVRSVLEIISFSKMNPDMVDDKTYSIRDLRNRDLYMNRMKPQEIFCGWLKKVGNDYKIEDCGVVGRISQDNIHKDFGSKFKAQQGGFINKPDFKTAKYKYDLLKKLNIELTQKFDFSKEAQGKKIYTKGTKLEGTLVLTGQASARKDNGRMGDGKIYEFVFFNAIGEITLSKETMENFKFAYFDGRKTEPKESPDWKYWKEKLANGQKVPVFFQKEMRKDSNGQNQTIIKHFGLSYLYKLPYNGSIHDGIFKSHFEKKLDLAQTLFGYVNNDTALKGRVQFSHFKAIDKTKIVKLAPRTENLGTPRASFYPFYIFQEDEKLYSTFMNDNFVLAGRKRYPIHKNNPDESKISYNPTSSIGTSFKPLKEGVIFKGKMRYHNLKKCEIGALLSALIFHSTPNTFHNVGLGKSLGYGKINVAIHYPNKEQYLQEFETLMKENINNWMSSNILKELLTMATPQDNQRNSQLSYMELADFAQTKNDKINGYLKNYSKLDNIVSVTFTSPSPQKQQAIQVATSDIISKTKMRKTITEAWQRVFGIFYHPHQIEEFLKGAFQTTPTDQQQIYLKLKDNHSFIELIRMIHQYNNGHLNDQEVGKLYLEVLNMRSYK
>NZ_CP039734.1|WP_167749326.1|607510_608293_-|hypothetical-protein
MTRFHKREAQKIVASFIGSNTLSIRGALIAIILMIIASWLPDGLIEVVAGVKEEDKVKVFCQLLISSGLLVWLMFFIKNLSKSYVPTVDIEIEPSPQASKVLILFLSANPKVHEVLHVNSIDELERNNFRMPLLAINHHKTRLKKVIVICSEDSQNIYEPFKNLVQKLLPTCDISMIEQTPSVIDFEDGNAVYELLETLYQDLAKAKYKHKEIMIDITGGTKVVTLASAIFAIPNDKELEYVSTSDYQIKTYDIRYSEAN
>NZ_CP039734.1|WP_167749325.1|605965_607495_-|CRISPR-associated-DxTHG-motif-protein
MTIISICGMIGTTKPNPNEKSFIQKTDADKAVYDVDLSLQYLIAPPKETYINMLPLLVDTFAKEHQIIALATASAEKIQKEVLSFEGLDVTKCSFEFIDDTAFEAYFSTVNQLLREHDEVIIDLSHGFRHLPLLTLVSLLVNHLKSPEKIKHILFAQEVIPSKHYKIIDLNEYLDIATIAYALVSFKDNYTIARSIVLRTDRYKPLLEILRDFSQHILSNAIQTLFERELPRQIREKIEELDSDPHVAALKELLSGIRLHLINLEAISKKADYERYYKIGKLLLEKGYLLNAITIINEALPLYIQNILHSKKLLCIPSGTDAYHVTKSMMDFIEKGKRDSTLMSEEIDAYFVCSNKVVFDAFSSLQQKMRQLRNDFAHAYGENAHETITSTLEMLFATFHTLVFEQNLFATIKPSDRTSPPCQYDYTLFELKANTMFLKLFPFVLFKNVFEEKRILKLYQKEIPPQWNIPKNMSEKQHRLIDILYHYFEHKNDPKEARHYMDAFYQDFK
>NZ_CP039734.1|WP_167749324.1|605512_605896_-|hypothetical-protein
MIKKLFVLMNHEMLPSQISQAHEVLGIEKIISLNDTNWSSFDPDVSSIITALASYKSRLLKDASRGDYLLVQGDFGATYHMVCFAKKLGLTPLYATTKRVATQKMVDGSVVTQREFLHVRFREYEDA
>NZ_CP039734.1|WP_167749334.1|617884_618817_-|hypothetical-protein
MKPIVVLPLIAAALFLGGCATTPSQPNPSSLQQATSLKEYIALKRGGETINYNVIAEREHQSIIEYRTYDEAMNVADARDIMEVLDDAKGYCESIKGKSVYGDKAIQALNARPTLLSLDYVSYKSAIREQGLGKYEGFYQCLSPNDGFSIVSMKDNVELHQSAILGNKRDLKETYSRFYLIQHDKAQSLGLKTWLKGTKYAQISSKYTSFEDLLDLEKNSSVFPWRYERITGAQKYCTYHGGELFVSNALTQFKPITMDEYLFMRLETMNPPTINVFMNQETFTCKNSANPAQSFTLIHTDKQLEYKKGE
>NZ_CP039734.1|WP_167749335.1|618827_619136_-|hypothetical-protein
MLSMIRDYLIMVLVKLVIAFVIFGLCLLGIFIAYWVFCDYTRATMQIHEIMINDFTKVVLGFISLLCLFQDVSTGNNNGNAKKFYKKTEKYFEMYDTAGIKW
>NZ_CP039734.1|WP_167749336.1|619148_619403_-|hypothetical-protein
MKKVLLALIMVVGCLFASEGQKSVTTCRFEARQIGAFADSPMTCSGDFKKSSTTQELYGDGWRLINSYTQNNNVYLVFEKNKNL
>NZ_CP039734.1|WP_167749337.1|620000_621242_+|MBL-fold-metallo-hydrolase
MTLTIHKGTNEIGGSCIELSTQSTTILFDYGTPLNLESTKLDFKNKKIDAIVISHPHQDHFGEITMVETTIPIYCGKLSKELMNATKLFTGQGLLANKFHHFEAWKSFQIGDITITPYLVDHSAVDAYAFLVEYDGKKVIYSGDFRANGRKSKLFENMLTQKKLKNADVLLMEGTMLQRNNEEFPTEISVENKIVETLKNTEVITFMIGSSQNIDSLVSAYRACKKAEKIFVIDMYTAWILEKMSSVSASIPTMDWKNVFVLKSYGGSYYEKIKKNRDYFGDFQYRLFSNVILLDDIQKEPSRYYVKISPWHIEKLLKKLDTSSANIIYSQWLGYLKPEFSDKKTVDLFKKLQENHNWVYAHTSGHADLESLKKFSEALSPKALVPIHTEHKDAFCKHFENTVVLEDGMPFTI
>NZ_CP039734.1|WP_167749338.1|621258_621807_+|hypothetical-protein
MQETNEKLILTFENVYKENSYRGYQIDDLTDFKSESIDVEMEDIKEDIIANIKAYLNIENNTSSFIYNDIETILEGDFLLDYTIETVDVVFHDHYTYDDYKHDNSLYIDMYEDHCLKIENKYEELDHDISQEQMDVFEDALHEETQEFIDNTSSYIANEGAYFISNYYYTVDVVITLTKSIF
>NZ_CP039734.1|WP_167749339.1|621828_622485_+|hypothetical-protein
MEFLEKLMQVIVDEGIQTPKAQVERYLSPILGLFLEEILKKTFHKEYQMIVPEFPIRKGTIAKSVGSEQSESNQSTNIDYLMYNQTENKFVFIELKTDSKSFKPSQRKIYEDLKCVAKDKNNIFGQLLYDDLEKILSKSTSKDKYKYLKTKWNDSMSAINDMEIIYIVPAKTGLKEEVGREDENKLCVLYFNDLPVELSLFSEEWKIILEYLKKLDMN
>NZ_CP039734.1|WP_167749340.1|622532_622898_-|hypothetical-protein
MKKNHFTNILVLVAVFFVFTGCAGKDMKKFGGEFALVNQTGEPISTAVTITLGVTIYGIGALVDSSREEEQKPQQQETIFLTENNQSMNESNTSQTSYFDSGIIHTNNVNHVDVMNGTPPQ
>NZ_CP039734.1|WP_167749341.1|622894_623335_-|hypothetical-protein
MFNDFIVHINNALGASNSKVIVIALVIFLYVSIGWFINSYGERHYQYPVVSENWNYILFLAACIGVAIFLGILISSGTGLLSGEEVMKLIVFGILVGFIALYVRIYRNTSLLFATFSYIYMVTFSIILITIAFILAMASSRRDDQN
>NZ_CP039734.1|WP_167749342.1|624226_625144_-|SPFH/Band-7/PHB-domain-protein
MDSSTGLSLSFFIILLLAGGYLLYQMVRIVPQGEEWIIERLGKFHTVLKPGLNFLIPVFDKVQMRLNTKELIQQMKAQEVITKDNAVVIISAVVFYKISDPAKAVYSIDNFELAVANMAATTLRSVIGNMELDTALSGREIIKSSVSEKISDHLEQWGLSLTAVEVQDIRPSDTLQEAMEKQAAAQREKKALIMKAEGEKQAAITKAEGFKQSLILEAEGKYEASKKEAEAKVALANGDKEAMVVIASQIKVGDAASYLLAQRYIDSVMHLGNSNNSKVVFIPTDLKHSLEGATGGLGTIFSQVK
>NZ_CP039734.1|WP_167749343.1|625153_625594_-|NfeD-family-protein
MPWYIWGIFGICAIVFEVASPTFFAGFIGVGFFGSAVLSYFQPNSLIWQILIALVGMFVGSFIFKRQKMGDTTSSKLGQSDEFIGIRGKVECDLKEGIQGSVMLSSPVLGSTQWKAVSENGVEIPNAATVKIVATHGTYLVVKQII

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Crispr_ID: NZ_CP039734_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP039734_3

623442-623821

TypeIII

Consensus_repeat	Method
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	CRT
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	CRISPRCasFinder

5 spacers

cas6,cas10

The CRISPR arrays of NZ_CP039734_3

>merge|NZ_CP039734|3|623442-623821|CRT,CRISPRCasFinder
GCAAATCCATAAAAATTATTGGGTCAGTATGTAATTAAGATCTTCCACTGTTAGAAAAAACCATCGAAAAGTTTCAATCCCCTTATAATCGGGTCAGTATGTAATTTAAAAAAGACGGTAAGAGTAAAAGTTTAGCTTTTGTTTCAATCCCCTTATAATCGGGTCAGTATGTAATATATCTATCTAGAGAATTAATCAATTTCATCGAGTTTCAATCCCCTTATAATCGGGTCAGTATGTAATAAAAAACTAAAGAGGTTAAATTAGAGCGAAATAGGTTTCAATCCCCTTATAATCGGGTCAGTATGTAATCAAAGACAGGAAGGAAAATCGATATACACACAGGTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT

>NZ_CP039734|3|3|623442-623821|CRT
GCAAATCCATAAAAATTATTGGGTCAGTATGTAAT	TAAGATCTTCCACTGTTAGAAAAAACCATCGAAAA
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	TTAAAAAAGACGGTAAGAGTAAAAGTTTAGCTTTT
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	ATATCTATCTAGAGAATTAATCAATTTCATCGA
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	AAAAAACTAAAGAGGTTAAATTAGAGCGAAATAG
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	CAAAGACAGGAAGGAAAATCGATATACACACAG
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT

>NZ_CP039734|3|3|623512-623821|CRISPRCasFinder
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	TTAAAAAAGACGGTAAGAGTAAAAGTTTAGCTTTT
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	ATATCTATCTAGAGAATTAATCAATTTCATCGA
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	AAAAAACTAAAGAGGTTAAATTAGAGCGAAATAG
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT	CAAAGACAGGAAGGAAAATCGATATACACACAG
GTTTCAATCCCCTTATAATCGGGTCAGTATGTAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP039734.1\|WP_167749342.1\|624226_625144_-\|SPFH/Band-7/PHB-domain-protein	unknown	unknown	gnl\|CDD\|223407
NZ_CP039734.1\|WP_167749337.1\|620000_621242_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293818
NZ_CP039734.1\|WP_167749347.1\|628487_629750_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|235865
NZ_CP039734.1\|WP_167749341.1\|622894_623335_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039734.1\|WP_167749334.1\|617884_618817_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039734.1\|WP_096047123.1\|631883_632192_-\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238042
NZ_CP039734.1\|WP_167749333.1\|615332_616160_-\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	mkCas0066_cas6_CAS-I:CAS-III	gnl\|CDD\|187890
NZ_CP039734.1\|WP_167749344.1\|625620_626019_-\|DUF805-domain-containing-protein	unknown	unknown	gnl\|CDD\|377540
NZ_CP039734.1\|WP_167749346.1\|626825_627941_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271177
NZ_CP039734.1\|WP_167749350.1\|633354_634704_-\|triphosphoribosyl-dephospho-CoA-synthase-CitG	unknown	unknown	gnl\|CDD\|132169
NZ_CP039734.1\|WP_167749349.1\|632252_633278_-\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|225070
NZ_CP039734.1\|WP_167749332.1\|613884_615276_-\|hypothetical-protein	cas10	mkCas0133_cas10_CAS-III	gnl\|CDD\|187810
NZ_CP039734.1\|WP_167749338.1\|621258_621807_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039734.1\|WP_167749345.1\|626152_626815_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039734.1\|WP_167749339.1\|621828_622485_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039734.1\|WP_167749336.1\|619148_619403_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039734.1\|WP_167749343.1\|625153_625594_-\|NfeD-family-protein	unknown	unknown	gnl\|CDD\|223961
NZ_CP039734.1\|WP_167749348.1\|629746_631882_-\|bifunctional-acyl-ACP--phospholipid-O-acyltransferase/long-chain-fatty-acid--ACP-ligase	unknown	unknown	gnl\|CDD\|181207
NZ_CP039734.1\|WP_167749340.1\|622532_622898_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039734.1\|WP_167749335.1\|618827_619136_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP039734.1\|WP_167749342.1\|624226_625144_-\|SPFH/Band-7/PHB-domain-protein	gnl\|CDD\|223407	COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones].	1.13984e-59
NZ_CP039734.1\|WP_167749337.1\|620000_621242_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293818	cd07732, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain. Includes functionally uncharacterized Enterococcus faecalis EF2904. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) for which this fold was named perform only a small fraction of the activities included in this superfamily.Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	4.13275e-69
NZ_CP039734.1\|WP_167749347.1\|628487_629750_-\|MFS-transporter	gnl\|CDD\|235865	PRK06814, PRK06814, acyl-[ACP]--phospholipid O-acyltransferase.	7.4728e-144
NZ_CP039734.1\|WP_096047123.1\|631883_632192_-\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.92124e-10
NZ_CP039734.1\|WP_167749333.1\|615332_616160_-\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	gnl\|CDD\|187890	cd09760, Cas6_III, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex.	1.11365e-08
NZ_CP039734.1\|WP_167749344.1\|625620_626019_-\|DUF805-domain-containing-protein	gnl\|CDD\|377540	pfam05656, DUF805, Protein of unknown function (DUF805). This family consists of several bacterial proteins of unknown function.	1.01222e-18
NZ_CP039734.1\|WP_167749346.1\|626825_627941_-\|site-specific-integrase	gnl\|CDD\|271177	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain. Rci protein is a tyrosine recombinase specifically involved in Shufflon type of DNA rearrangement in bacteria. The shufflon of plasmid R64 consists of four invertible DNA segments which are separated and flanked by seven 19-bp repeat sequences. RCI recombinase facilitates the site-specific recombination between any inverted repeats results in an inversion of the DNA segment(s) either independently or in groups. HP1 integrase promotes site-specific recombination of the HP1 genome into that of Haemophilus influenza. Bacteriophage Hp1_like integrases are tyrosine based site specific recombinases. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	2.72039e-22
NZ_CP039734.1\|WP_167749350.1\|633354_634704_-\|triphosphoribosyl-dephospho-CoA-synthase-CitG	gnl\|CDD\|132169	TIGR03125, citrate_citG, triphosphoribosyl-dephospho-CoA synthase CitG. Triphosphoribosyl-dephospho-CoA is transferred to, and becomes the prosthetic group of, the respective acyl carrier protein subunits of both citrate lyase and malonate decarboxylase. Members of this protein family are triphosphoribosyl-dephospho-CoA synthases specifically from citrate lyase systems. This protein sometimes occurs as a fusion protein with CitX, the phosphoribosyl-dephospho-CoA transferase. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Energy metabolism, Fermentation].	3.83184e-93
NZ_CP039734.1\|WP_167749332.1\|613884_615276_-\|hypothetical-protein	gnl\|CDD\|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	6.73193e-08
NZ_CP039734.1\|WP_167749349.1\|632252_633278_-\|amidohydrolase-family-protein	gnl\|CDD\|225070	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only].	8.78686e-18
NZ_CP039734.1\|WP_167749348.1\|629746_631882_-\|bifunctional-acyl-ACP--phospholipid-O-acyltransferase/long-chain-fatty-acid--ACP-ligase	gnl\|CDD\|181207	PRK08043, PRK08043, bifunctional acyl-ACP--phospholipid O-acyltransferase/long-chain-fatty-acid--ACP ligase.	0
NZ_CP039734.1\|WP_167749343.1\|625153_625594_-\|NfeD-family-protein	gnl\|CDD\|223961	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones].	9.8045e-08

>NZ_CP039734.1|WP_167749341.1|622894_623335_-|hypothetical-protein
MFNDFIVHINNALGASNSKVIVIALVIFLYVSIGWFINSYGERHYQYPVVSENWNYILFLAACIGVAIFLGILISSGTGLLSGEEVMKLIVFGILVGFIALYVRIYRNTSLLFATFSYIYMVTFSIILITIAFILAMASSRRDDQN
>NZ_CP039734.1|WP_167749340.1|622532_622898_-|hypothetical-protein
MKKNHFTNILVLVAVFFVFTGCAGKDMKKFGGEFALVNQTGEPISTAVTITLGVTIYGIGALVDSSREEEQKPQQQETIFLTENNQSMNESNTSQTSYFDSGIIHTNNVNHVDVMNGTPPQ
>NZ_CP039734.1|WP_167749339.1|621828_622485_+|hypothetical-protein
MEFLEKLMQVIVDEGIQTPKAQVERYLSPILGLFLEEILKKTFHKEYQMIVPEFPIRKGTIAKSVGSEQSESNQSTNIDYLMYNQTENKFVFIELKTDSKSFKPSQRKIYEDLKCVAKDKNNIFGQLLYDDLEKILSKSTSKDKYKYLKTKWNDSMSAINDMEIIYIVPAKTGLKEEVGREDENKLCVLYFNDLPVELSLFSEEWKIILEYLKKLDMN
>NZ_CP039734.1|WP_167749338.1|621258_621807_+|hypothetical-protein
MQETNEKLILTFENVYKENSYRGYQIDDLTDFKSESIDVEMEDIKEDIIANIKAYLNIENNTSSFIYNDIETILEGDFLLDYTIETVDVVFHDHYTYDDYKHDNSLYIDMYEDHCLKIENKYEELDHDISQEQMDVFEDALHEETQEFIDNTSSYIANEGAYFISNYYYTVDVVITLTKSIF
>NZ_CP039734.1|WP_167749337.1|620000_621242_+|MBL-fold-metallo-hydrolase
MTLTIHKGTNEIGGSCIELSTQSTTILFDYGTPLNLESTKLDFKNKKIDAIVISHPHQDHFGEITMVETTIPIYCGKLSKELMNATKLFTGQGLLANKFHHFEAWKSFQIGDITITPYLVDHSAVDAYAFLVEYDGKKVIYSGDFRANGRKSKLFENMLTQKKLKNADVLLMEGTMLQRNNEEFPTEISVENKIVETLKNTEVITFMIGSSQNIDSLVSAYRACKKAEKIFVIDMYTAWILEKMSSVSASIPTMDWKNVFVLKSYGGSYYEKIKKNRDYFGDFQYRLFSNVILLDDIQKEPSRYYVKISPWHIEKLLKKLDTSSANIIYSQWLGYLKPEFSDKKTVDLFKKLQENHNWVYAHTSGHADLESLKKFSEALSPKALVPIHTEHKDAFCKHFENTVVLEDGMPFTI
>NZ_CP039734.1|WP_167749336.1|619148_619403_-|hypothetical-protein
MKKVLLALIMVVGCLFASEGQKSVTTCRFEARQIGAFADSPMTCSGDFKKSSTTQELYGDGWRLINSYTQNNNVYLVFEKNKNL
>NZ_CP039734.1|WP_167749335.1|618827_619136_-|hypothetical-protein
MLSMIRDYLIMVLVKLVIAFVIFGLCLLGIFIAYWVFCDYTRATMQIHEIMINDFTKVVLGFISLLCLFQDVSTGNNNGNAKKFYKKTEKYFEMYDTAGIKW
>NZ_CP039734.1|WP_167749334.1|617884_618817_-|hypothetical-protein
MKPIVVLPLIAAALFLGGCATTPSQPNPSSLQQATSLKEYIALKRGGETINYNVIAEREHQSIIEYRTYDEAMNVADARDIMEVLDDAKGYCESIKGKSVYGDKAIQALNARPTLLSLDYVSYKSAIREQGLGKYEGFYQCLSPNDGFSIVSMKDNVELHQSAILGNKRDLKETYSRFYLIQHDKAQSLGLKTWLKGTKYAQISSKYTSFEDLLDLEKNSSVFPWRYERITGAQKYCTYHGGELFVSNALTQFKPITMDEYLFMRLETMNPPTINVFMNQETFTCKNSANPAQSFTLIHTDKQLEYKKGE
>NZ_CP039734.1|WP_167749333.1|615332_616160_-|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6
MLRFIKIDITFSSSFTTSLDFLGSTLRGAFGVALKAVSCLNKTQECQGCFATQNCLYYDFFEIKNRAHAYRFSKPLHENNYNFSLYLFEAACEKLPYVLSALHTMFGRIGVGWNRHLIPIERIVCNGVVVSSGKNFDLSQIVVDVFETKEYFPDITLHFLTPLRIKSNNALLHTTPTLEQILSSIFNRHNELKGIPLAKLPFTPRYKELRTHLRFQELSRYSNRQESTMHLGGMMGTIDYEDVDEHSYALLKLGELLGVGKQTVFGLGEIKVGHQ
>NZ_CP039734.1|WP_167749332.1|613884_615276_-|hypothetical-protein
MAKYLYGASIQGIQEFIFKTNQLQEIIGASEIVRSLEGEFTAFANVADENILLNAAGNIKALFDDEENLRNVVKNFPKKIMQKAYGITLSQAVVDMTKAEYDTYEKAINALEKKLKTQRNKPSIPLDISINLMELAPKTARPVAKIEKKGNDEIRMDVSTAQKYQANPTNKGQLSDLKNSKGKIAIIHADGNGLGALIPTLSNIPVFSKGLDKATHEAYEEAKKVIQSGKIRKIILGGDDMSVICDANDALAFTRTFLEKFETLTYMHTGHKLTACAGIAFCNEKYPFHYAVSLAEALCGATKKHAKNIDKKLAPSSLMFHNIQSSNFQSWEKFIEDELTIRNDHDVIRCDFGPYYVAHVGQPSIEDLIDVVKVYQQEGSPISRLREWLGELSKSHHYAKDLLDRINENSAQNDKKALDTLNLKLKKVHPALGTQTMIIPKDGFDKTLIYDVLQILSVTEAKA
>NZ_CP039734.1|WP_167749342.1|624226_625144_-|SPFH/Band-7/PHB-domain-protein
MDSSTGLSLSFFIILLLAGGYLLYQMVRIVPQGEEWIIERLGKFHTVLKPGLNFLIPVFDKVQMRLNTKELIQQMKAQEVITKDNAVVIISAVVFYKISDPAKAVYSIDNFELAVANMAATTLRSVIGNMELDTALSGREIIKSSVSEKISDHLEQWGLSLTAVEVQDIRPSDTLQEAMEKQAAAQREKKALIMKAEGEKQAAITKAEGFKQSLILEAEGKYEASKKEAEAKVALANGDKEAMVVIASQIKVGDAASYLLAQRYIDSVMHLGNSNNSKVVFIPTDLKHSLEGATGGLGTIFSQVK
>NZ_CP039734.1|WP_167749343.1|625153_625594_-|NfeD-family-protein
MPWYIWGIFGICAIVFEVASPTFFAGFIGVGFFGSAVLSYFQPNSLIWQILIALVGMFVGSFIFKRQKMGDTTSSKLGQSDEFIGIRGKVECDLKEGIQGSVMLSSPVLGSTQWKAVSENGVEIPNAATVKIVATHGTYLVVKQII
>NZ_CP039734.1|WP_167749344.1|625620_626019_-|DUF805-domain-containing-protein
MFSNYFSELKKTFVYKGRTSRKSFWLFAVMHTILLLSVLGLIFLSDALAKGDTKSIFSTIEAISSILLIPLYLFPTLSITTRRFHDLNMSGWHQLYSFLPYIGGLILFIYMCYKSVDENNRYNIVDESAIAL
>NZ_CP039734.1|WP_167749345.1|626152_626815_-|hypothetical-protein
MSKKKNIIDCSLLDMHKYSKDAFQYLYDKLTDKGFKRAYVAKDRPINAVTGILWDITQEDDEVTKIIEGMDKIDNIKAESSKSRLEKIANTWIKKAYREYFVNGYKISRSLFVKFTKNIFEPKSEENRKQLEAASKKLFDKTYNTYRNRQHRITNSDKFNELVARYPKLNIDKAYRYAIVSGKFNLNADDIEEFEYILKFALSKKEDSNKKNQYYMLKKV
>NZ_CP039734.1|WP_167749346.1|626825_627941_-|site-specific-integrase
MARVKSKSNVGVYKEVLDNGDTSFYYTYKDIDGKKRWVKVGLKSNGYSERDAVVQRRKTMIELEDLEEPLYIKKNKFQEIITLNQLATYYFNEKSDMKNHRDAYLKYMHQISPVFGLDNILTLRAEKIQRFKQKLIEKGYRAASVNYYLAQLKAIINYAVFTDRINMVNPCSKVKLLALNNQRKRILSENEIELLLKSLLHKQKAYLFVLIAIFTGARPKAILNLQCKNIDFSFNKITFIAMKNRPSYSVAIHSRLREALQQWVEYLNPEEYLFYRENPMLDKSSHMSYIGIKKQTQPTMDLLFNQGLQVNDRINKVTLYTLRHSFGSLLSKRGANAFVIKELMNHAKIDTTDRYVKVTNQEAKKYIDAIL
>NZ_CP039734.1|WP_167749347.1|628487_629750_-|MFS-transporter
MSAFYLLKTKRFAPLFTVQFLGAFNDNIFKNTLAILVTFHAGSWTSLPLEVLAPLIGAIFIVPFFLFSGLAGALADKYDKAALTRLVKLLEFGLMSIATLGFYMHWFSLLLVVVFGMGLHSTLFGPIKYAIIPQHMGENELVTANALVESGTFGAILLGTLGGGLIAASAYGGIIAGIMGMAIALIGYVCSRSIPTAPSLNAQMSLSYNIFSQTAQTLKLSYANKTVFLSIIAISWFWLYGALLLSQFPAFVKIVLEGDETTVTLLLSLFTVGIGVGSFLCEKLSHHTIRPSLIILGALGMAFFGIDFALTSSSFVPIERLFSSITFWHILVDLTLIALFGGLFSVPLYAIMQSQSDPSFRSRIIAANNILNALFMVVGAVLTMVLLDASWRIPEVFLSAAIGTGIIATWIAWVVYKRID
>NZ_CP039734.1|WP_167749348.1|629746_631882_-|bifunctional-acyl-ACP--phospholipid-O-acyltransferase/long-chain-fatty-acid--ACP-ligase
MIKIALRIILRFLFKLRVQGHFTANKNEPMLIIANHQSFLDGLILGVMLPVSPVFIINTQIAKNPFVRFFLMLADHLTVDPSNPMAIKAVIRLVESGRPVVIFPEGRITTTGSLMKIYEGSAFVAVKTNAMVVPVMIQGATFSRLSRMPKTFPHRLFPQITLHYCTPTKLTVSHEGTSHERRLLSGEAMRHLMQECSFDARPANDLFGTFLDAIETYGKNKAIVEDIKQVEYTYAQLLKMALGLGRLLSPITQKDEAVGVLMPTAVASLALVLGLSGMKRVPAMLNFTAGVDGLQSACTAAEIKTIVTSRAFVEQAKLAPKLEALQGVRIVYLEELKTSMRLVDKLWLMLYAIHFPRLVANSQDEKESAVILFTSGSEGKPKGVVLSHEALLANIAQISSIVDFSTEDKMLNALPIFHSFGLTAGSLLPIFRGMHLFMYPSPLHYRVIPEIAYDRSCTILLGTSTFLHNYARHAHPYDFYRVRYVIAGAEKLSENVRELWFEKFGLRIFEGYGATETAPVIAVNTPMAYKKGTVGQILPGIESKLVPVAGIEDGGILHVKGANVMSGYLRAENPGVLEKPTSEAGEGWYNTGDIVSIDEAGFVQIKGRVKRFAKIAGEMISLESVEKLATLTSSGFLHASSSIPDVARGEAIVLFTTDKNLNREALQKSAQSNGYPEIAVPRKIVHLETLPLLGTGKTDYVTLKSMASEIA
>NZ_CP039734.1|WP_096047123.1|631883_632192_-|winged-helix-turn-helix-transcriptional-regulator
MQTQYAKDLPLEWKPMSAIFMALGDAHRQRILLLFEDGERLNAGQIAEVSPLARTTVSHHLKILHQAEVLLSEKIGKEVWFWVNKPLLEATFSNVLNYLHGN
>NZ_CP039734.1|WP_167749349.1|632252_633278_-|amidohydrolase-family-protein
MKTIDTHVHLLSSEVSFNRIYDKVAVRFFAKRFGIDANALAQEPYKAYTDALMNSVKHSEHIEKIVLFGVDVKVDDEGNVLHKDKTVCASNEDVAALYAQFPELIIPFFSINPKRPNALELIEKYHALGFKGAKFLQNYWGVDTREARYRPYFEKLAALDLPLIIHVGSESSVHSVKTCESIEMLRQPLEVGVKVICAHMALSYEPRHIFKALSSNPKRFNEDYFTLLEMLKTHDNLYADVSALLTPVRAKVLRHLSTQSDIHPKLLFGSDYPVPFTTVWNSYDIALLKRICIAQERNVFDRYVKAMLVYFPANHPIYNNYRKVLCLEENTLHVKSQTDIF
>NZ_CP039734.1|WP_167749350.1|633354_634704_-|triphosphoribosyl-dephospho-CoA-synthase-CitG
MIDQPTSLDAILRAKEERAWKQKELLSRHPLASLISLTINIPSLIKLSHEAVVVHEIAHQALLEMIENEGIELLACESKQPSTGAESFFTCKADAKTLKALTCKLENSHPLGRLMDIDVLDLTGNILSRSTLGLSKRRCFICEEEAKLCARAQKHTYMELNAHIKHLVEKHAFAHSIALWCERAMQTEVELTPKPGLVDQANSGAHHDMDIHTFYASIRAIKPFVTQWIETAQIDAHEDAKQSFVRLREIGIACEKAMFEATSNVNTHKGMIFCLAVFCGAMGRLKGCDQRFTCKNLQAQMQALCANLVEDDLLHVKPNSAGARFFYETGSSGIRGIAQSGFAIIFETSLPFFQACKEEEGEAVALKRTLLFLMSLLEDSTLWSRGGMAGLEYAKTKAKALLHVKPNAQNLDIHLKALDEDMISKNLSPGGSADLLAMTWLMAHIVKDF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP039734_1	1.6\|599587\|33\|NZ_CP039734\|CRISPRCasFinder,CRT,PILER-CR	599587-599619	33	HG422566	Cardinium endosymbiont cBtQ1 of Bemisia tabaci plasmid pCHV, complete sequence	1588-1620	5	0.848
NZ_CP039734_2	2.9\|616475\|33\|NZ_CP039734\|CRISPRCasFinder	616475-616507	33	MF036691	Serratia phage CBH8, complete genome	44348-44380	6	0.818
NZ_CP039734_2	2.9\|616475\|33\|NZ_CP039734\|CRISPRCasFinder	616475-616507	33	MF036690	Serratia phage CHI14, complete genome	44348-44380	6	0.818
NZ_CP039734_2	2.9\|616475\|33\|NZ_CP039734\|CRISPRCasFinder	616475-616507	33	MF036692	Serratia phage X20, complete genome	44191-44223	6	0.818
NZ_CP039734_1	1.1\|599243\|34\|NZ_CP039734\|CRISPRCasFinder,CRT	599243-599276	34	NZ_CP029750	Staphylococcus aureus strain Smith plasmid pSS41, complete sequence	10171-10204	7	0.794
NZ_CP039734_1	1.6\|599587\|33\|NZ_CP039734\|CRISPRCasFinder,CRT,PILER-CR	599587-599619	33	NZ_CP013332	Fusobacterium hwasookii ChDC F174 plasmid unnamed1, complete sequence	27232-27264	7	0.788
NZ_CP039734_1	1.6\|599587\|33\|NZ_CP039734\|CRISPRCasFinder,CRT,PILER-CR	599587-599619	33	KX229736	Campylobacter phage PC5, complete genome	91578-91610	7	0.788
NZ_CP039734_1	1.6\|599587\|33\|NZ_CP039734\|CRISPRCasFinder,CRT,PILER-CR	599587-599619	33	KX879627	Campylobacter phage vB_CjeM_Los1, complete genome	7646-7678	7	0.788
NZ_CP039734_2	2.1\|616337\|32\|NZ_CP039734\|CRT	616337-616368	32	MN694477	Marine virus AFVG_250M1149, complete genome	26205-26236	7	0.781
NZ_CP039734_2	2.1\|616337\|32\|NZ_CP039734\|CRT	616337-616368	32	MN693738	Marine virus AFVG_250M1148, complete genome	25989-26020	7	0.781
NZ_CP039734_2	2.3\|616474\|34\|NZ_CP039734\|CRT,PILER-CR	616474-616507	34	MF036691	Serratia phage CBH8, complete genome	44348-44381	7	0.794
NZ_CP039734_2	2.3\|616474\|34\|NZ_CP039734\|CRT,PILER-CR	616474-616507	34	MF036690	Serratia phage CHI14, complete genome	44348-44381	7	0.794
NZ_CP039734_2	2.3\|616474\|34\|NZ_CP039734\|CRT,PILER-CR	616474-616507	34	MF036692	Serratia phage X20, complete genome	44191-44224	7	0.794
NZ_CP039734_1	1.6\|599587\|33\|NZ_CP039734\|CRISPRCasFinder,CRT,PILER-CR	599587-599619	33	MN693026	Marine virus AFVG_117M72, complete genome	10033-10065	8	0.758
NZ_CP039734_1	1.6\|599587\|33\|NZ_CP039734\|CRISPRCasFinder,CRT,PILER-CR	599587-599619	33	NC_013168	Rippkaea orientalis PCC 8802 plasmid pP880204, complete sequence	5340-5372	8	0.758
NZ_CP039734_2	2.12\|616682\|32\|NZ_CP039734\|CRISPRCasFinder	616682-616713	32	NC_019298	Rahnella sp. WMR121 plasmid pHW121, complete sequence	740-771	8	0.75
NZ_CP039734_2	2.12\|616682\|32\|NZ_CP039734\|CRISPRCasFinder	616682-616713	32	NZ_LN907828	Erwinia gerundensis isolate E_g_EM595 plasmid pEM01, complete sequence	23475-23506	8	0.75
NZ_CP039734_1	1.8\|599724\|35\|NZ_CP039734\|CRISPRCasFinder,CRT,PILER-CR	599724-599758	35	AP014488	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C31A-MedDCM-OCT-S45-C60, * SEQUENCING IN PROGRESS *, 7 ordered pieces	26553-26587	9	0.743
NZ_CP039734_1	1.8\|599724\|35\|NZ_CP039734\|CRISPRCasFinder,CRT,PILER-CR	599724-599758	35	AP014487	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C31A-MedDCM-OCT-S34-C76, * SEQUENCING IN PROGRESS *, 2 ordered pieces	21621-21655	9	0.743
NZ_CP039734_1	1.8\|599724\|35\|NZ_CP039734\|CRISPRCasFinder,CRT,PILER-CR	599724-599758	35	AP014093	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C31A-MedDCM-OCT-S29-C126, * SEQUENCING IN PROGRESS *	6592-6626	9	0.743
NZ_CP039734_2	2.3\|616474\|34\|NZ_CP039734\|CRT,PILER-CR	616474-616507	34	NZ_CP023318	Bacillus megaterium strain A plasmid p1, complete sequence	133390-133423	9	0.735
NZ_CP039734_2	2.3\|616474\|34\|NZ_CP039734\|CRT,PILER-CR	616474-616507	34	NZ_CP024036	Bacillus aryabhattai strain K13 plasmid unnamed1	76394-76427	9	0.735
NZ_CP039734_2	2.6\|616681\|33\|NZ_CP039734\|CRT,PILER-CR	616681-616713	33	NC_019298	Rahnella sp. WMR121 plasmid pHW121, complete sequence	739-771	9	0.727
NZ_CP039734_2	2.9\|616475\|33\|NZ_CP039734\|CRISPRCasFinder	616475-616507	33	NZ_CP023318	Bacillus megaterium strain A plasmid p1, complete sequence	133390-133422	9	0.727
NZ_CP039734_2	2.9\|616475\|33\|NZ_CP039734\|CRISPRCasFinder	616475-616507	33	NZ_CP024036	Bacillus aryabhattai strain K13 plasmid unnamed1	76395-76427	9	0.727
NZ_CP039734_3	3.3\|623617\|33\|NZ_CP039734\|CRT,CRISPRCasFinder	623617-623649	33	MN480762	Streptococcus salivarius strain NU10 plasmid pSsal-NU10, complete sequence	184756-184788	9	0.727
NZ_CP039734_1	1.1\|599243\|34\|NZ_CP039734\|CRISPRCasFinder,CRT	599243-599276	34	NZ_CP039853	Salinimonas sp. KX18D6 plasmid plas12, complete sequence	11567-11600	10	0.706
NZ_CP039734_1	1.1\|599243\|34\|NZ_CP039734\|CRISPRCasFinder,CRT	599243-599276	34	NC_011311	Aliivibrio salmonicida LFI1238 plasmid pVSAL840, complete sequence	11772-11805	11	0.676

1. spacer 1.6|599587|33|NZ_CP039734|CRISPRCasFinder,CRT,PILER-CR matches to HG422566 (Cardinium endosymbiont cBtQ1 of Bemisia tabaci plasmid pCHV, complete sequence) position: , mismatch: 5, identity: 0.848

taaaatttattaaaaggaaat-aaaatgattaaa	CRISPR spacer
gaaattttattaaaagtaaataaaaatgagtaa-	Protospacer
 *** *********** **** ******* ***

2. spacer 2.9|616475|33|NZ_CP039734|CRISPRCasFinder matches to MF036691 (Serratia phage CBH8, complete genome) position: , mismatch: 6, identity: 0.818

tatcaaggagaataaatgattgtttcatttatg	CRISPR spacer
tatcaaggtgaataaatgattgttacagataaa	Protospacer
******** *************** **  ** .

3. spacer 2.9|616475|33|NZ_CP039734|CRISPRCasFinder matches to MF036690 (Serratia phage CHI14, complete genome) position: , mismatch: 6, identity: 0.818

tatcaaggagaataaatgattgtttcatttatg	CRISPR spacer
tatcaaggtgaataaatgattgttacagataaa	Protospacer
******** *************** **  ** .

4. spacer 2.9|616475|33|NZ_CP039734|CRISPRCasFinder matches to MF036692 (Serratia phage X20, complete genome) position: , mismatch: 6, identity: 0.818

tatcaaggagaataaatgattgtttcatttatg	CRISPR spacer
tatcaaggtgaataaatgattgttacagataaa	Protospacer
******** *************** **  ** .

5. spacer 1.1|599243|34|NZ_CP039734|CRISPRCasFinder,CRT matches to NZ_CP029750 (Staphylococcus aureus strain Smith plasmid pSS41, complete sequence) position: , mismatch: 7, identity: 0.794

caaatcaaaaagtagaaaaagctatggtttatcc	CRISPR spacer
caaatcaaaaaggagataaagctattgagtctgc	Protospacer
************ *** ******** *  * * *

6. spacer 1.6|599587|33|NZ_CP039734|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013332 (Fusobacterium hwasookii ChDC F174 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.788

taaaatttattaaaaggaaataaaatgattaaa	CRISPR spacer
aaaaatttattaaaaggaaatacaataaaacca	Protospacer
 ********************* ***.*    *

7. spacer 1.6|599587|33|NZ_CP039734|CRISPRCasFinder,CRT,PILER-CR matches to KX229736 (Campylobacter phage PC5, complete genome) position: , mismatch: 7, identity: 0.788

taaaatttattaaaaggaaataaaatgattaaa	CRISPR spacer
tgaaatttatttaaaggaaagaaaatggcttta	Protospacer
*.********* ******** ******..*  *

8. spacer 1.6|599587|33|NZ_CP039734|CRISPRCasFinder,CRT,PILER-CR matches to KX879627 (Campylobacter phage vB_CjeM_Los1, complete genome) position: , mismatch: 7, identity: 0.788

taaaatttattaaaaggaaataaaatgattaaa	CRISPR spacer
tgaaatttatttaaaggaaagaaaatggcttta	Protospacer
*.********* ******** ******..*  *

9. spacer 2.1|616337|32|NZ_CP039734|CRT matches to MN694477 (Marine virus AFVG_250M1149, complete genome) position: , mismatch: 7, identity: 0.781

--gtaacagaagttgagcatacaactgcatatta	CRISPR spacer
tggcgac--aagttgataatacaactgcatattt	Protospacer
  *..**  *******  ***************

10. spacer 2.1|616337|32|NZ_CP039734|CRT matches to MN693738 (Marine virus AFVG_250M1148, complete genome) position: , mismatch: 7, identity: 0.781

--gtaacagaagttgagcatacaactgcatatta	CRISPR spacer
tggcgac--aagttgataatacaactgcatattt	Protospacer
  *..**  *******  ***************

11. spacer 2.3|616474|34|NZ_CP039734|CRT,PILER-CR matches to MF036691 (Serratia phage CBH8, complete genome) position: , mismatch: 7, identity: 0.794

ttatcaaggagaataaatgattgtttcatttatg	CRISPR spacer
ctatcaaggtgaataaatgattgttacagataaa	Protospacer
.******** *************** **  ** .

12. spacer 2.3|616474|34|NZ_CP039734|CRT,PILER-CR matches to MF036690 (Serratia phage CHI14, complete genome) position: , mismatch: 7, identity: 0.794

ttatcaaggagaataaatgattgtttcatttatg	CRISPR spacer
ctatcaaggtgaataaatgattgttacagataaa	Protospacer
.******** *************** **  ** .

13. spacer 2.3|616474|34|NZ_CP039734|CRT,PILER-CR matches to MF036692 (Serratia phage X20, complete genome) position: , mismatch: 7, identity: 0.794

ttatcaaggagaataaatgattgtttcatttatg	CRISPR spacer
ctatcaaggtgaataaatgattgttacagataaa	Protospacer
.******** *************** **  ** .

14. spacer 1.6|599587|33|NZ_CP039734|CRISPRCasFinder,CRT,PILER-CR matches to MN693026 (Marine virus AFVG_117M72, complete genome) position: , mismatch: 8, identity: 0.758

taaaatttattaaaaggaaat-aaaatgattaaa	CRISPR spacer
caaaatttattacaaggaaatcaaagcggacaa-	Protospacer
.*********** ******** ***..*. .**

15. spacer 1.6|599587|33|NZ_CP039734|CRISPRCasFinder,CRT,PILER-CR matches to NC_013168 (Rippkaea orientalis PCC 8802 plasmid pP880204, complete sequence) position: , mismatch: 8, identity: 0.758

taaaatttattaaaaggaaataaaatgattaaa	CRISPR spacer
gaaaatttattacaagaaaataaaaatttgtaa	Protospacer
 *********** ***.********   *  **

16. spacer 2.12|616682|32|NZ_CP039734|CRISPRCasFinder matches to NC_019298 (Rahnella sp. WMR121 plasmid pHW121, complete sequence) position: , mismatch: 8, identity: 0.75

aaaagacgcaagatctgcagaaattttaaaaa	CRISPR spacer
tatgaaggcaatttctgcagaaattttaaaat	Protospacer
 * ..* ****  ******************

17. spacer 2.12|616682|32|NZ_CP039734|CRISPRCasFinder matches to NZ_LN907828 (Erwinia gerundensis isolate E_g_EM595 plasmid pEM01, complete sequence) position: , mismatch: 8, identity: 0.75

aaaagacgcaagatctgcagaaattttaaaaa	CRISPR spacer
gaagtccgcaggatctgcagtaattttaagca	Protospacer
.**.  ****.********* ********. *

18. spacer 1.8|599724|35|NZ_CP039734|CRISPRCasFinder,CRT,PILER-CR matches to AP014488 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C31A-MedDCM-OCT-S45-C60, *** SEQUENCING IN PROGRESS ***, 7 ordered pieces) position: , mismatch: 9, identity: 0.743

aaagtaaatgtaaaagaagatggtagaaaatctca	CRISPR spacer
gaattatatgtaaaagaagatggtagtataggaaa	Protospacer
.** ** ******************* * *    *

19. spacer 1.8|599724|35|NZ_CP039734|CRISPRCasFinder,CRT,PILER-CR matches to AP014487 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C31A-MedDCM-OCT-S34-C76, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces) position: , mismatch: 9, identity: 0.743

aaagtaaatgtaaaagaagatggtagaaaatctca	CRISPR spacer
gaattatatgtaaaagaagatggtagtataggaaa	Protospacer
.** ** ******************* * *    *

20. spacer 1.8|599724|35|NZ_CP039734|CRISPRCasFinder,CRT,PILER-CR matches to AP014093 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C31A-MedDCM-OCT-S29-C126, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.743

aaagtaaatgtaaaagaagatggtagaaaatctca	CRISPR spacer
gaattatatgtaaaagaagatggtagtataggaaa	Protospacer
.** ** ******************* * *    *

21. spacer 2.3|616474|34|NZ_CP039734|CRT,PILER-CR matches to NZ_CP023318 (Bacillus megaterium strain A plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.735

ttatcaag-----gagaataaatgattgtttcatttatg	CRISPR spacer
-----aagagtttaagaatgaatgattgtttcctttatc	Protospacer
     ***     .*****.************ *****

22. spacer 2.3|616474|34|NZ_CP039734|CRT,PILER-CR matches to NZ_CP024036 (Bacillus aryabhattai strain K13 plasmid unnamed1) position: , mismatch: 9, identity: 0.735

ttatcaag-----gagaataaatgattgtttcatttatg	CRISPR spacer
-----aagagtttaagaatgaatgattgtttcctttatc	Protospacer
     ***     .*****.************ *****

23. spacer 2.6|616681|33|NZ_CP039734|CRT,PILER-CR matches to NC_019298 (Rahnella sp. WMR121 plasmid pHW121, complete sequence) position: , mismatch: 9, identity: 0.727

caaaagacgcaagatctgcagaaattttaaaaa	CRISPR spacer
atatgaaggcaatttctgcagaaattttaaaat	Protospacer
  * ..* ****  ******************

24. spacer 2.9|616475|33|NZ_CP039734|CRISPRCasFinder matches to NZ_CP023318 (Bacillus megaterium strain A plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.727

tatcaagg----agaataaatgattgtttcatttatg	CRISPR spacer
----agagtttaagaatgaatgattgtttcctttatc	Protospacer
    *..*    *****.************ *****

25. spacer 2.9|616475|33|NZ_CP039734|CRISPRCasFinder matches to NZ_CP024036 (Bacillus aryabhattai strain K13 plasmid unnamed1) position: , mismatch: 9, identity: 0.727

tatcaagg----agaataaatgattgtttcatttatg	CRISPR spacer
----agagtttaagaatgaatgattgtttcctttatc	Protospacer
    *..*    *****.************ *****

26. spacer 3.3|623617|33|NZ_CP039734|CRT,CRISPRCasFinder matches to MN480762 (Streptococcus salivarius strain NU10 plasmid pSsal-NU10, complete sequence) position: , mismatch: 9, identity: 0.727

atatctatctagagaattaatcaatttcatcga	CRISPR spacer
aatagtatctagagaatacatcaatttcatatc	Protospacer
*    ************  ***********

27. spacer 1.1|599243|34|NZ_CP039734|CRISPRCasFinder,CRT matches to NZ_CP039853 (Salinimonas sp. KX18D6 plasmid plas12, complete sequence) position: , mismatch: 10, identity: 0.706

caaatcaaaaagtagaaaaagctatggtttatcc	CRISPR spacer
gaaatcaaaatgaagaaaaagctatggcgagatg	Protospacer
 ********* * **************.  . .

28. spacer 1.1|599243|34|NZ_CP039734|CRISPRCasFinder,CRT matches to NC_011311 (Aliivibrio salmonicida LFI1238 plasmid pVSAL840, complete sequence) position: , mismatch: 11, identity: 0.676

caaatcaaaaagtagaaaaagc--tatggtttatcc	CRISPR spacer
acaaccaaaaagtagaaaaagcgatgcgactcaa--	Protospacer
  **.*****************  *..*..*.*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

768621 : 780062

Escherichia_phage(22.22%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_167749440.1\|768621_769959_-	lipopolysaccharide biosynthesis protein RfbH	A0A218MN59	uncultured_virus	9.3e-68	35.3
WP_096047221.1\|770884_772633_-	thiamine pyrophosphate-binding protein	E4WLQ6	Ostreococcus_tauri_virus	1.2e-83	34.0
WP_167750624.1\|772629_773727_-	CDP-glucose 4,6-dehydratase	J7Q7J8	Aeropyrum_coil-shaped_virus	5.5e-18	27.9
WP_096047222.1\|773726_774500_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_096047223.1\|774518_775388_-	dTDP-4-dehydrorhamnose reductase	A0A1D7XFA3	Escherichia_phage	2.9e-38	36.8
WP_096047224.1\|775380_775956_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	2.6e-43	50.3
WP_167749441.1\|775988_776807_-	DNA ligase	A0A1X9VNU1	Mimivirus	6.3e-35	35.2
WP_167749442.1\|776807_777830_-	dTDP-glucose 4,6-dehydratase	K7QJG5	Escherichia_phage	1.2e-78	46.1
WP_167749443.1\|777826_778690_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.7e-105	65.6
WP_096047228.1\|778691_780062_-	phosphomannomutase/phosphoglucomutase	A0A127AWJ1	Bacillus_phage	9.8e-57	32.7

DBSCAN-SWA_2

891162 : 898814

Campylobacter_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096047310.1\|891162_891843_-	7-cyano-7-deazaguanine synthase QueC	A0A0A0RPC6	Escherichia_phage	5.2e-67	55.8
WP_087439308.1\|891842_892421_-	7-carboxy-7-deazaguanine synthase QueE	A0A2P1CLA1	Pantoea_phage	1.4e-12	30.5
WP_162494884.1\|892563_892713_-	hypothetical protein	NA	NA	NA	NA
WP_167749514.1\|892885_894349_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_087439310.1\|894524_895064_+	6-carboxytetrahydropterin synthase	D5GVR0	Campylobacter_virus	8.9e-38	42.7
WP_087439311.1\|895165_895864_-	dUTPase	NA	NA	NA	NA
WP_096047311.1\|895879_896662_-	patatin	G8DDB1	Micromonas_pusilla_virus	2.4e-07	26.5
WP_096047312.1\|896646_897420_-	UDP-2,3-diacylglucosamine diphosphatase	A0A218MKA7	uncultured_virus	1.2e-62	46.3
WP_096047313.1\|897416_898814_-	phosphate starvation-inducible protein PhoH	D5GV52	Campylobacter_virus	7.6e-81	39.9

DBSCAN-SWA_3

2670786 : 2729793

Bacillus_phage(18.18%)

protease,integrase,tRNA,transposase

attL 2668073:2668095|attR 2729827:2729849

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2668073:2668095	attL	NA	NA	NA	NA
WP_167750569.1\|2670786_2672037_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_087438591.1\|2672407_2673280_+	rubrerythrin family protein	NA	NA	NA	NA
WP_087438593.1\|2674874_2675372_+	hypothetical protein	NA	NA	NA	NA
WP_087438594.1\|2675368_2675809_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_087438595.1\|2675839_2677141_-	TolC family protein	NA	NA	NA	NA
WP_167750570.1\|2677271_2678429_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_167750571.1\|2678436_2680050_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	2.5e-11	28.8
WP_167750572.1\|2680046_2681165_+	ABC transporter permease	NA	NA	NA	NA
WP_167750573.1\|2681161_2682241_+	ABC transporter permease	NA	NA	NA	NA
WP_088437344.1\|2682293_2682899_-	MarC family protein	NA	NA	NA	NA
WP_087439857.1\|2682964_2683570_+	hypothetical protein	NA	NA	NA	NA
WP_088437345.1\|2683640_2684300_+	DUF1847 domain-containing protein	NA	NA	NA	NA
WP_167750574.1\|2684363_2685728_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	4.0e-18	37.8
WP_087438600.1\|2685720_2686398_-	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_087438601.1\|2686387_2687446_-\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_167750575.1\|2687445_2687988_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_087438603.1\|2687984_2688752_-	enoyl-ACP reductase	NA	NA	NA	NA
WP_087438604.1\|2688751_2689645_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
WP_096046614.1\|2689646_2690948_-	insulinase family protein	A0A167R9K4	Powai_lake_megavirus	1.0e-39	26.9
WP_167750576.1\|2690954_2692019_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_088437347.1\|2692093_2693809_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.1e-60	30.0
WP_088437348.1\|2693809_2695207_-\|tRNA	cysteine--tRNA ligase	A0A1V0SAQ2	Catovirus	4.8e-51	32.7
WP_088437349.1\|2695193_2696603_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA
WP_167750577.1\|2696734_2698666_+	DUF342 domain-containing protein	NA	NA	NA	NA
WP_167750578.1\|2698662_2699220_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_167750579.1\|2699233_2700268_+	D-alanine--D-alanine ligase	NA	NA	NA	NA
WP_087438612.1\|2700321_2700546_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_167750580.1\|2700538_2701258_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_087438613.1\|2701254_2701524_+	acylphosphatase	NA	NA	NA	NA
WP_167750581.1\|2701529_2702969_+	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA
WP_167750582.1\|2703040_2705149_+	phosphate acetyltransferase	NA	NA	NA	NA
WP_167750583.1\|2705145_2706357_+	acetate kinase	NA	NA	NA	NA
WP_167750584.1\|2706405_2706852_-	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	1.1e-20	37.4
WP_167750585.1\|2706933_2707641_+	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA
WP_087438618.1\|2707665_2708109_+	hypothetical protein	NA	NA	NA	NA
WP_087438619.1\|2708157_2709399_-	type II secretion system F family protein	NA	NA	NA	NA
WP_087438620.1\|2709395_2711147_-	type II/IV secretion system protein	NA	NA	NA	NA
WP_167750586.1\|2711210_2712092_-	hypothetical protein	NA	NA	NA	NA
WP_096046631.1\|2712084_2712894_-	ATP-binding protein	NA	NA	NA	NA
WP_096046632.1\|2712886_2714431_-	pilus (MSHA type) biogenesis protein MshL	R9TEZ5	Vibrio_phage	3.2e-11	25.7
WP_096046633.1\|2714399_2714828_-	hypothetical protein	NA	NA	NA	NA
WP_096046634.1\|2714824_2715472_-	hypothetical protein	NA	NA	NA	NA
WP_167750587.1\|2715464_2716991_-	hypothetical protein	NA	NA	NA	NA
WP_167750588.1\|2717049_2717940_-	GTPase Era	NA	NA	NA	NA
WP_167750589.1\|2717953_2719279_-	HslU--HslV peptidase ATPase subunit	A0A1B2IDZ7	Erwinia_phage	2.7e-27	24.3
WP_167750590.1\|2719275_2719821_-\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_167750591.1\|2719826_2720273_-	50S ribosomal protein L9	NA	NA	NA	NA
WP_167750592.1\|2720286_2720709_-	rhodanese-like domain-containing protein	NA	NA	NA	NA
WP_096046641.1\|2720715_2721945_-	argininosuccinate synthase	NA	NA	NA	NA
WP_167750593.1\|2722101_2722347_+	RNA-binding S4 domain-containing protein	NA	NA	NA	NA
WP_167750594.1\|2722346_2723330_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	8.6e-47	32.9
WP_167750595.1\|2723326_2723758_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
WP_096046645.1\|2723744_2724467_+	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.8e-25	29.9
WP_167750596.1\|2724485_2725757_+	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_096046647.1\|2725753_2726584_-	adenylosuccinate lyase	NA	NA	NA	NA
WP_096046648.1\|2726647_2727373_-	arginyltransferase	NA	NA	NA	NA
WP_167750597.1\|2727376_2727547_-	hypothetical protein	NA	NA	NA	NA
WP_167750598.1\|2727677_2728235_+\|integrase	site-specific integrase	A0A0H5AW64	Pseudomonas_phage	1.8e-09	27.4
WP_084613060.1\|2728945_2729410_-\|transposase	transposase	NA	NA	NA	NA
WP_025343414.1\|2729331_2729793_-\|transposase	DDE transposase family protein	NA	NA	NA	NA
2729827:2729849	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP039734

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection