CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP047360	Klebsiella variicola strain AHKv-S01 chromosome, complete genome	2 crisprs	csa3,cas3,DEDDh,DinG,WYL,cas3HD	0	0	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP047360_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047360_1

4011476-4011582

Orphan

Consensus_repeat	Method
CCCTCTCCCATAGGGAGAGGGAGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047360_1

>merge|NZ_CP047360|1|4011476-4011582|CRISPRCasFinder
CCCTCTCCCATAGGGAGAGGGAGCACACCCTAAAAAAGGCCATTGTCATTGCCTTTTTGCGTTTACCTTGCCCTCACCCCAACCCTCTCCCACAGGGAGAGGGAGCA

>NZ_CP047360|1|1|4011476-4011582|CRISPRCasFinder
CCCTCTCCCATAGGGAGAGGGAGCA	CACCCTAAAAAAGGCCATTGTCATTGCCTTTTTGCGTTTACCTTGCCCTCACCCCAA
CCCTCTCCCACAGGGAGAGGGAGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047360.1\|WP_012542475.1\|4001798_4003034_+\|PucR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|377939
NZ_CP047360.1\|WP_002893903.1\|4019588_4019786_-\|YbdD/YjiX-family-protein	unknown	unknown	gnl\|CDD\|225434
NZ_CP047360.1\|WP_012968714.1\|4005486_4006296_+\|inositol-monophosphatase	unknown	unknown	gnl\|CDD\|223559
NZ_CP047360.1\|WP_008805604.1\|4003030_4004269_+\|cytosine-deaminase	unknown	unknown	gnl\|CDD\|181713
NZ_CP047360.1\|WP_023339778.1\|4000539_4001802_+\|cytosine-permease	unknown	unknown	gnl\|CDD\|236821
NZ_CP047360.1\|WP_008805591.1\|4019187_4019592_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP047360.1\|WP_012968719.1\|4011746_4012988_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227601
NZ_CP047360.1\|WP_012542481.1\|4016837_4017926_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|182570
NZ_CP047360.1\|WP_050887518.1\|4019878_4021984_-\|carbon-starvation-protein-CstA	unknown	unknown	gnl\|CDD\|184976
NZ_CP047360.1\|WP_165453569.1\|4004414_4005365_+\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380501
NZ_CP047360.1\|WP_012968720.1\|4014176_4015175_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
NZ_CP047360.1\|WP_012542480.1\|4015171_4016674_-\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP047360.1\|WP_008805598.1\|4010249_4011449_+\|S-methyl-5-thioribose-kinase	unknown	unknown	gnl\|CDD\|236561
NZ_CP047360.1\|WP_131024393.1\|4018910_4019213_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|224937
NZ_CP047360.1\|WP_012068432.1\|4017983_4018727_+\|3-oxoacyl-ACP-reductase-FabG	unknown	unknown	gnl\|CDD\|235500
NZ_CP047360.1\|WP_008805600.1\|4007790_4009059_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366031
NZ_CP047360.1\|WP_008805596.1\|4013091_4014156_-\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380528
NZ_CP047360.1\|WP_008805601.1\|4006406_4007765_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340870
NZ_CP047360.1\|WP_167341396.1\|4009119_4010148_-\|S-methyl-5-thioribose-1-phosphate-isomerase	unknown	unknown	gnl\|CDD\|273112
NZ_CP047360.1\|WP_050887523.1\|3999479_4000088_-\|methylthioribulose-1-phosphate-dehydratase	unknown	unknown	gnl\|CDD\|236415

Protein	Function_ID	Function_description	E-value
NZ_CP047360.1\|WP_012542475.1\|4001798_4003034_+\|PucR-family-transcriptional-regulator	gnl\|CDD\|377939	pfam07905, PucR, Purine catabolism regulatory protein-like family. The bacterial proteins found in this family are similar to the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR). PucR is thought to be a transcriptional activator involved in the induction of the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression. The other members of this family are also annotated as being putative regulatory proteins.	1.78324e-33
NZ_CP047360.1\|WP_002893903.1\|4019588_4019786_-\|YbdD/YjiX-family-protein	gnl\|CDD\|225434	COG2879, COG2879, Uncharacterized small protein [Function unknown].	1.33159e-37
NZ_CP047360.1\|WP_012968714.1\|4005486_4006296_+\|inositol-monophosphatase	gnl\|CDD\|223559	COG0483, SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family [Carbohydrate transport and metabolism].	2.78916e-72
NZ_CP047360.1\|WP_008805604.1\|4003030_4004269_+\|cytosine-deaminase	gnl\|CDD\|181713	PRK09230, PRK09230, cytosine deaminase; Provisional.	0
NZ_CP047360.1\|WP_023339778.1\|4000539_4001802_+\|cytosine-permease	gnl\|CDD\|236821	PRK11017, codB, cytosine permease; Provisional.	0
NZ_CP047360.1\|WP_008805591.1\|4019187_4019592_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	4.5247e-10
NZ_CP047360.1\|WP_012968719.1\|4011746_4012988_-\|hypothetical-protein	gnl\|CDD\|227601	COG5276, COG5276, Uncharacterized conserved protein [Function unknown].	2.26518e-148
NZ_CP047360.1\|WP_012542481.1\|4016837_4017926_+\|oxidoreductase	gnl\|CDD\|182570	PRK10586, PRK10586, putative oxidoreductase; Provisional.	0
NZ_CP047360.1\|WP_050887518.1\|4019878_4021984_-\|carbon-starvation-protein-CstA	gnl\|CDD\|184976	PRK15015, PRK15015, carbon starvation protein CstA.	0
NZ_CP047360.1\|WP_165453569.1\|4004414_4005365_+\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380501	cd06278, PBP1_LacI-like, ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	1.0414e-94
NZ_CP047360.1\|WP_012968720.1\|4014176_4015175_-\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	3.65981e-69
NZ_CP047360.1\|WP_012542480.1\|4015171_4016674_-\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	0
NZ_CP047360.1\|WP_008805598.1\|4010249_4011449_+\|S-methyl-5-thioribose-kinase	gnl\|CDD\|236561	PRK09550, mtnK, methylthioribose kinase; Reviewed.	0
NZ_CP047360.1\|WP_131024393.1\|4018910_4019213_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|224937	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning].	6.46236e-09
NZ_CP047360.1\|WP_012068432.1\|4017983_4018727_+\|3-oxoacyl-ACP-reductase-FabG	gnl\|CDD\|235500	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated.	8.6298e-87
NZ_CP047360.1\|WP_008805600.1\|4007790_4009059_+\|histidine-phosphatase-family-protein	gnl\|CDD\|366031	pfam00328, His_Phos_2, Histidine phosphatase superfamily (branch 2). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches.The smaller branch 2 contains predominantly eukaryotic proteins. The catalytic functions in members include phytase, glucose-1-phosphatase and multiple inositol polyphosphate phosphatase. The in vivo roles of the mammalian acid phosphatases in branch 2 are not fully understood, although activity against lysophosphatidic acid and tyrosine-phosphorylated proteins has been demonstrated.	3.61435e-59
NZ_CP047360.1\|WP_008805596.1\|4013091_4014156_-\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380528	cd06305, PBP1_methylthioribose_binding-like, similar to methylthioribose-binding protein of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily. Proteins similar to methylthioribose-binding protein of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.	4.03307e-122
NZ_CP047360.1\|WP_008805601.1\|4006406_4007765_+\|MFS-transporter	gnl\|CDD\|340870	cd17312, MFS_OPA_SLC37, Organophosphate:Pi antiporter/Solute Carrier family 37 of the Major Facilitator Superfamily of transporters. Organophosphate:Pi antiporters (OPA) are integral membrane proteins responsible for the transport of specific organophosphates or sugar phosphates across biological membranes with the simultaneous translocation of inorganic phosphate into the opposite direction. The OPA family is also called solute carrier family 37 (SLC37) in vertebrates. Members include glucose-6-phosphate (Glc6P) transporter (also called translocase or exchanger), glycerol-3-phosphate permease, 2-phosphonopropionate transporter, phosphoglycerate transporter, as well as membrane sensor protein UhpC from Escherichia coli. UhpC is both a sensor and a transport protein; it recognizes external Glc6P and induces transport by UhpT, and it can also transport Glc6P. Vertebrates contain four SLC37 or sugar-phosphate exchange (SPX) proteins: SLC37A1 (SPX1), SLC37A2 (SPX2), SLC37A3 (SPX3), and SLC37AA4 (SPX4). The OPA/SLC37 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.48585e-128
NZ_CP047360.1\|WP_167341396.1\|4009119_4010148_-\|S-methyl-5-thioribose-1-phosphate-isomerase	gnl\|CDD\|273112	TIGR00512, methylthioribose-1-phosphate_isomerase_predicted, S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA. [Amino acid biosynthesis, Aspartate family].	1.96689e-150
NZ_CP047360.1\|WP_050887523.1\|3999479_4000088_-\|methylthioribulose-1-phosphate-dehydratase	gnl\|CDD\|236415	PRK09220, PRK09220, methylthioribulose 1-phosphate dehydratase.	6.59552e-138

>NZ_CP047360.1|WP_008805598.1|4010249_4011449_+|S-methyl-5-thioribose-kinase
MSQYHTFTAHDAVAYAQQFAGIDNPSELVSAQEVGDGNLNLVFKVFDRQGVSRAIVKQALPYVRCVGESWPLTLDRARLEAQTLVAHYQHSPQHTVKIHHFDPELAVMVMEDLSDHRIWRGELIANVYYPQAARQLGDYLAQVLFHTSDFYLHPHEKKAQVAQFSNPAMCEITEDLFFNDPYQIHERNNYPAELEADVAALRDDAQLKLAVAALKHRFFAHAEALLHGDIHSGSIFVAEGSLKAIDAEFGYFGPIGFDIGTAIGNLLLNYCGLPGQLGIRDAAAAREQRLNDIHQLWTTFAERFQALAAEKTRDAALAYPGYASAFLKKVWADAVGFCGSELIRRSVGLSHVADIDTIQDDAMRHECLRHAITLGKALIVLAERIDSVDELLARVRQYS
>NZ_CP047360.1|WP_167341396.1|4009119_4010148_-|S-methyl-5-thioribose-1-phosphate-isomerase
MQTLQTTSLRVSENQLFILDQQALPQEKRWLAADNVALLVDHIHALRVRGAPLIGLSASLLLALLAQRGLNQDALQQALETLRAARPTAVNLMNNLDRMKQALAREDYPQALEAEALRLVEEDKQLCDRIAEAGSALVKPGSRLLTHCNTGGLATAGVGTALGVIALAHRQGKVASVWVDETRPLLQGGRLTAWELGELGVPYQLITDSMAASLMAQGQVDAVWVGADRIAANGDVANKIGTYSLAVLAHYHQIPFYVAAPQTTLDRHCPNGAAIPIEQRAAAEVTGVAGSFGAVQWAPTGAAVYNPAFDVTPAGLVSGWVLDSGVVTPAQVAAGAFAPDNG
>NZ_CP047360.1|WP_008805600.1|4007790_4009059_+|histidine-phosphatase-family-protein
MMPARHQGLLRLFIACALPLLALQSAAAADWQLEKVVELSRHGIRPPTAGNREAIEAATGRPWTEWTTHDGELTGHGYAAVVNKGREEGQHYRQLGLLQAGCPTAESIYVRASPLQRTRATAQALVDGAFPGCGVAIHYVSGDADPLFQTDKFAATQTDPARQLAAVKEKAGDLAQRRQALAPAIQLLQQAVCQADKPCPIFDTPWQVEQSKSGKTTISGLSVMANMVETLRLGWSENLPLSQLAWGKITQARQITALLPLLTENYDLSNDVLYTAQKRGSVLLNAMLDGVKPEANPNVRWLLLVAHDTNIAMVRTLMNFSWQLPGYSRGNIPPGSSLVLERWRNAKSGERYLRVYFQAQGLDDLRRLQTPDAQHPMLRQEWRQPGCRQTDVGTLCPFQAAITALGQRIDRSSAPAVAMVLP
>NZ_CP047360.1|WP_008805601.1|4006406_4007765_+|MFS-transporter
MSGIIAFFRASPPKAGAAFDEQRFRRVRWQTFIAMTLAYVTFYVCRLSFTVAKSALVDLGITPTELGMIGSTLFFSYAIGKLVNGFIADHANVVRYMSLGLLLSAGMNLMMGMTTNALLLAIFWGINGWAQSMGVGPCAVSLARWYGVKERGTFYGIWSTAHNIGEAVTYMVIAAVIAGFGWQMGYLSTAALGAAGVVLLVLFMHDSPQSSGFPSINVIRDEPQEEAEARGSVFKNQLLALRNPALWTLALASAFMYIDRYAVNSWGIFFLEQDKAYSTLEASGIIGVNAIAGIAGTIIAGMLSDRFFPRNRSVMAGFISLLNTAGFALMLWSPHNYYTDILAMIIFGATIGALTCFLGGLIAVDISSRKAAGAALGTIGIASYAGAGLGEFLTGIIIDKTAILENGKTLYDFSTLALFWVGTGLGSALLCFTTAAIVARRHAVERQTSFSS
>NZ_CP047360.1|WP_012968714.1|4005486_4006296_+|inositol-monophosphatase
MQSQESEALQARYRLACELAKAGAELAFEYYQQREALTVDYKGDDLQDVVSVADKRVEAFVKQRIQSAFPQDGFLGEESGARLPDARVLWVVDPIDGTSCFLNGLHTWCLSLAIVADGEPVIGVVYDPNHRELFHALRGHGAWLNDAPIRPHPATTVKEGVMGVGTSHRVTPADFLPFLQALLSDGGMFIRNGSGALMSAWAAAGRLIGYYEPHMNPWDALPGLVLMREAGGASNDFLAQEGIQRGNPLLLASQTLYPQLKKMIPQPLH
>NZ_CP047360.1|WP_165453569.1|4004414_4005365_+|LacI-family-DNA-binding-transcriptional-regulator
MARLAGVSRSAVSRTFTPGASVSEKTRQKVLSAAEALGYQVNIIARTMITGSSNFIGIVTAGFDNPFRSKLLAPLVHQLALNGFMPLLMNADDPQQLAPSLKQLLSYHVAGVIITSGAPPLSLAEEYLARKIPVTLINRHADLAGCDRVCSDNAQGAKLVADLFSRRGWQQVGFIGENRENFSTRQRYEAFIARTSGMAVSSRFCDGGGYQAGYQAARELVAENPGVQALFCATDMLALGALDGLRDAPAPLPAIVGFDDIPQADWQPYQLTTVQQNTALLAHHAVDLLMTRIARFSLPSRHREVPVKLIIRHSTK
>NZ_CP047360.1|WP_008805604.1|4003030_4004269_+|cytosine-deaminase
MKIINARLRRQEALFTLDLQDGMIHRISAQAAMQSADAGDIDAQGRLAIPPFVEPHIHLDATLTAGEPEWNRSGTLFEGITRWSQRKASITPEDTRQRALKTIGMLRDFGVQHVRTHVDVTDPSLAALKALLAVKQEAADLIDLQIVAFPQEGIESYPDGRGLMTRAIEMGADVVGGIPHYENTRDKGVSSVMFLMDLAQRYGRLVDVHCDEIDDPQSRFLEVLAEEARVRGMGAQVTASHTCAMGSYDNAYCSKLFRLLKASGINFISCPTESIHLQGRFDSWPKRRGVTRVAELDRAGINVCFAQDSIQDPWYPLGNGNILRILDAGLHICHMLGYDDLQRCLDFVTDNSARALCLGDNYGLAEGRPANLLILDAENDYEAVRRQARVLTSIRHGKVILQREVEHIRYPA
>NZ_CP047360.1|WP_012542475.1|4001798_4003034_+|PucR-family-transcriptional-regulator
MSLTVSELLALEGLSALRLRAGKQGLQRAVRWYYVAENEHIAEWIMGGELVFITGINHPRDEANLIQLLMEGKQRGIAGMVILTGEAYIHAIPATLIALADELGIPLIEQPYLLKMVIVTERIGTALVRSENALQSQRDILMQLVTGDYPDLQMLHQRALHQQLDFTRPLRLAALRLEGLSRLFRQFPPEQAEAWLLQAHRSVRQQLQQQLNQQGNPFPLLERSNMFLFLLPDEEGEGFQQKKWLQQWLQALADGEEGLSLLCGLSAPVRQLQGYPRALSQARQALDLCDTLRPTQRISDYQQLGFIKLLSAVSDPALLNDFMHDTLGCLIEPGRKAPWLLLETLETLLQENGNVVRAADRLGLHRNTLHQRIQRIEKLTGYPVSHPQFHLNASVALVIWRLSQNHLQDPP
>NZ_CP047360.1|WP_023339778.1|4000539_4001802_+|cytosine-permease
MSNSNDFPLVEAPAAGRKGVFSIAMVLFSFTFFTGTMFAGGKLGVSFSIVNLLWIAVIGNALLALYAASLGWIAARSGLNTVLMGRFCFGEIGSKLADFILGFAELGWYAWGTATVAISLVKILALPEALTQPLMVLFGILFCVTALVGYKGLDALSRLSVPLMFVLLMVSMYLALHHAGGWQAMTHIAPSDTMTWSAAITMVFGTFASGATQATNWTRLANSSRTAILASMGSFLIGNGLMIVAGAWCAIVYQQADIVEVLILQGLSVAAVIMLCLNLLTIQGPTIYNVSAAACHLLRSERRRTLTIAAAGVGIVLAIGGMYEMLIPFLVLLGSIIPPIGGVILADYWFARGGRYPLLQNARLPRFNWLGLGAYAAGAVVAYLSPWIAPLVGITVSALVYIVLSLLSKRQPAAVAEQEP
>NZ_CP047360.1|WP_050887523.1|3999479_4000088_-|methylthioribulose-1-phosphate-dehydratase
MWQERLAQLVTTCHWIGAKGWAPATGGNMSVRQDDTWCWLSESGRDKGSLTTEDFLQVEIATNQAPSGRKPSAETGLHTLVYRLFPESNVVLHVHTVNATVLSRIEKSDTLALQGYEMQKTLSGQHSHLDTVPVAIFDNDQDIDALAARIADYAQTRPLRYGFLLRGHGLTCWGKDIQEARRQLEGLEFLFECELMRRRYEP
>NZ_CP047360.1|WP_012968719.1|4011746_4012988_-|hypothetical-protein
MSALPSPEYSRNMRLIGHSDQGGRPDGVQLMVHRGFAYIGHMVSQGFSVVDVRDPTRPTTVNYIAAPPGTWNVHLQAHDDLLLVINARDLFADARFADEKVYYTRSVGDTVSDVQDKGWSAGLRIFDISTPAQPREISFLSLNGIGIHRIWYVGGRWAYVSALIDGFTDYIFLTIDLADPRKPEVAGRWWLPGMHQAGGETPDWPQGKRYALHHAIIAGDTAYGSWRDGGLTLLDVKDRTQPTLISHRNWSPPFGGGTHTALPLPDRDLLVVLDEAVLDNQEDGEKLIWLFDIREPSNPVSIATFPPPDEIDYVAKGAHFGPHNLHENRPGSFVSSTLIFATYQNAGVRAYDISNPYRPLETGALVPAAPKTMMDTRPGRPQVIQSCDVFVDAQGIIYSTDYNGGLSVIEYLG
>NZ_CP047360.1|WP_008805596.1|4013091_4014156_-|sugar-ABC-transporter-substrate-binding-protein
MKKIALSLMTLGLLQSTAALATAPTPVPAAIAEHSGPIRIAVIRNLGSDDNTTQFVSGALQEGKKLGFKISTFLSNGDDAKFQDFVNQAISQKYDGIILSQGRDPYSTALVKKAVDAGIKVAVFDTAVSGEIPGVTVSQQDDASLTELSFGQLVKDFNGKANIVKLWVAGFPPMERRQAAYQTLLKQNPGIKELESIGAVSSDVQGDTANKVGAILAKYPKGKIDAIWGTWDAFSQGAYKALKENGRTEIKLYSIDISNQDLQLMREAGSPWKVSVAVDPKLIGATNVRLIANKIAGEPTPATYDFKAAAIPQALLAAQPGAVNVASLGKIIPGWGQTEDFIAPWFATLEAKNK
>NZ_CP047360.1|WP_012968720.1|4014176_4015175_-|ABC-transporter-permease
MSKALAVNATVSGRQRFFDFLYKWGMLLTVVLLVAVFGLASDNFLDPFNIINILRSIAIVTVIAIGVSISLTIGGFDLSVGSTASLANALVISLFVWHGLGTTEAILITLALCTLVGLFNAFLIVVLRIPDMLATLASLFVIQGVAMTYSYGGSITENMVLPSGEMAEGTIPAGFGALGQVPTIVIIMLVVTLVAQLALSFTTHGRRMYAIGGNPEAARLSGLRITRYKVAAYVIASLLAGLGGILLASRIGSSQVNAGGGYLMDAVAAAWIGFSLAGSGKPNALGTLVGAVILGVLSNGLVMLSVPYYAMDIIKGLVLAGALALTYFQRRT
>NZ_CP047360.1|WP_012542480.1|4015171_4016674_-|sugar-ABC-transporter-ATP-binding-protein
MSANRLEMHNISLAFSGFQALNKVDFTLHGGSVHALTGANGAGKSTLMAVLCGTHAHYQGEVTINDQPVTIRSPRDAKQLGIHLVQQEVDVALVPGLSIAENIMLDRLAEPGMAFRWSRVRQLAREALAQLDVALDVRRSIDSCTLAEKQQILLARALSHHCRFLILDEPTAPLDQHESERLFAVVRRLQQQGIGVVFISHRIHELKAICDTLTVLRDGRLIESGPMAPLSGEQIVEKMLGHELSDIFPPPRPPHGEEVLLQIDGLHDEALLQDISLRLRKGEILGIAGLAGAGKTELCKALFGASKSRVQRGELNGQPWRPRDPADSVGRGLALVPEERRKEGIFIEEPIAMNLAVSADNSFSRWSLFGHRQAWRWAEEVIARLGVRATGPGQMLRRLSGGNQQKVAIGKWLRSHANVLIFDEPTKGVDVKAKTDLFMLIDGLAREGKGVIYASGEFAELVGLCDRICVLWDGRIVAEIPGAEAREETLLYYSTGGAAA
>NZ_CP047360.1|WP_012542481.1|4016837_4017926_+|oxidoreductase
MSNSDIRVVPGPANYFSHPGSLERLSDFFSADQLSRAVWVYGERALAGAEPFLPAAFHLPEAKKIRFTGHCSERDVAALVQASGDDRAVVIGVGGGALLDSAKVLARRLGVPLVAIPTIAATCAAWTPLSVWYSDAGQALNFEIFDDANFLVLVEPRIILNAPAEYLLAGIGDTLAKWYEAVVLAPQPEALPLTVRLGINGALAIRDVLLASSETALADQRRGDLTQAFRDVVEAIIAGGGMVGGLGERYTRVAAAHAVHNGLTVLPQTDKFLHGTKVAYGILVQSALLAQDDVLAQLVQAYQRFNLPTTLAALEVDINNRTELDRVIAHTLRPGESIHYLPVTLTPEVLRAAFEKVEYFSR
>NZ_CP047360.1|WP_012068432.1|4017983_4018727_+|3-oxoacyl-ACP-reductase-FabG
MQIDLTGKKALVTGASRGLGRAIALSLARAGADVVITYEKSADKAQAVADEIKALGRHGEAVQADSASAQAIQEAVTHAARSLGGLDILVNNAGIARGGPLESMTLADIDALINVNIRGVVIATQEALVHMADGGRIINIGSCLANRVAMPGIAVYAMTKSALNALTRGLARDLGPRGITVNLVHPGPTNSDMNPEDGEQAEAQRQMIAVGHYGQPEDIAAAVTFLASPAAGQISGTGLDVDGGLNA
>NZ_CP047360.1|WP_131024393.1|4018910_4019213_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MKIVWSKTADKPFSKIDNRYKSRIKSRLEKMDDKASPISDIKKLSSPENHYRLRLGDYRVIYTFGDPPGDTCYVVAVKRRTTITYLHEEDTEYDYSVHQG
>NZ_CP047360.1|WP_008805591.1|4019187_4019592_+|helix-turn-helix-transcriptional-regulator
MTIQYIKDEEGKDQYVVIPYSDYFRMRLALLEYDDEDESDWEDIPYESDIYDNVMLPGEVCDVMHKENVSLQAAWRILRGLSQQEVAAKLGISQSAVSQLEALDSRPQKRTREKLAAIYGCTQEQISLYLPKEG
>NZ_CP047360.1|WP_002893903.1|4019588_4019786_-|YbdD/YjiX-family-protein
MFDTLSKAGKYLGQAAKMMIGVPDYDNYVEHMRITHPDQTPMTYEEFFRERQDARYGGKGGAKCC
>NZ_CP047360.1|WP_050887518.1|4019878_4021984_-|carbon-starvation-protein-CstA
MNNSGKYLIWTLLSVIGAFALGYIALNRGEQINALWIVVAAVCVYLIAYRFYGLYIAKTVLGVDPTRMTPAVRHNDGLDYVPTDKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWILAGVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGPTAGVLALVACFMIMVIILAVLAMIVVKALTHSPWGTYTVAFTIPLAIFMGIYIRYLRPGRIGEVSVIGLVMLVFAIISGGWVAESPTWAPWFDYTGVQLTWILVGYGFVAAVLPVWLLLAPRDYLSTFLKIGTIVGLAIGILIMRPTLTMPALTKFVDGTGPVWTGNLFPFLFITIACGAVSGFHALISSGTTPKMLANEGQACFIGYGGMLMESFVAIMALVAACIIDPGVYFAMNSPMAVLAPAGTTDVVASAAQVVSGWGFSITPDTLHQIASEVGEQSIISRAGGAPTLAVGMAYILHGSLGGLMDVSFWYHFAILFEALFILTAVDAGTRAARFMLQDLLGVISPGLKKTSSLPANLLATALCVLAWGYFLHQGVVDPLGGINTLWPLFGIANQMLAGMALMLCAVVLFKMKRQRYAWVALLPTSWLLICTLTAGWQKSFSPDTKVGFLAIANKFQAMIDSGNIPPQYTESQLAQLVFNNRLDAGLTIFFMIVVVVLALFSIKTALAALKEDKPTAKETPYQAMPADAQTITAQAKRAH

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Crispr_ID: NZ_CP047360_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047360_2

4734358-4734463

Orphan

Consensus_repeat	Method
GGGAGAGGGTTGGGGTGAGGGCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047360_2

>merge|NZ_CP047360|2|4734358-4734463|CRISPRCasFinder
GGGAGAGGGTTGGGGTGAGGGCAAGGTAAATGCAAAAAGGCAACGCAAGTTGCCTTTTTTAGGGTTTGCTCCCTCTCCCACCGGGAGAGGGTTGGGGTGAGGGCAA

>NZ_CP047360|2|2|4734358-4734463|CRISPRCasFinder
GGGAGAGGGTTGGGGTGAGGGCAA	GGTAAATGCAAAAAGGCAACGCAAGTTGCCTTTTTTAGGGTTTGCTCCCTCTCCCACC
GGGAGAGGGTTGGGGTGAGGGCAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047360.1\|WP_012542919.1\|4737124_4738096_-\|phosphoserine-phosphatase	unknown	unknown	gnl\|CDD\|182988
NZ_CP047360.1\|WP_022065753.1\|4744673_4745459_-\|TatD-related-deoxyribonuclease	unknown	unknown	gnl\|CDD\|171118
NZ_CP047360.1\|WP_012542917.1\|4727239_4727713_-\|protein-CreA	unknown	unknown	gnl\|CDD\|236752
NZ_CP047360.1\|WP_032732481.1\|4738200_4738848_+\|YtjB-family-periplasmic-protein	unknown	unknown	gnl\|CDD\|236885
NZ_CP047360.1\|WP_008807515.1\|4727922_4728792_+\|MDR-efflux-pump-AcrAB-transcriptional-activator-RobA	unknown	unknown	gnl\|CDD\|185076
NZ_CP047360.1\|WP_008807525.1\|4742042_4743365_-\|thymidine-phosphorylase	unknown	unknown	gnl\|CDD\|180276
NZ_CP047360.1\|WP_008807518.1\|4730051_4730381_-\|trp-operon-repressor	unknown	unknown	gnl\|CDD\|179289
NZ_CP047360.1\|WP_012968984.1\|4732635_4734303_+\|energy-dependent-translational-throttle-protein-EttA	unknown	unknown	gnl\|CDD\|236992
NZ_CP047360.1\|WP_002887789.1\|4739944_4740664_-\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275
NZ_CP047360.1\|WP_023339559.1\|4726537_4727227_-\|two-component-system-response-regulator-CreB	unknown	unknown	gnl\|CDD\|236838
NZ_CP047360.1\|WP_165454137.1\|4723694_4725053_-\|cell-envelope-integrity-protein-CreD	unknown	unknown	gnl\|CDD\|236960
NZ_CP047360.1\|WP_002887802.1\|4734478_4735711_-\|multifunctional-transcriptional-regulator/nicotinamide-nucleotide-adenylyltransferase/ribosylnicotinamide-kinase-NadR	unknown	unknown	gnl\|CDD\|236151
NZ_CP047360.1\|WP_032736642.1\|4725113_4726538_-\|two-component-system-sensor-histidine-kinase-CreC	unknown	unknown	gnl\|CDD\|236846
NZ_CP047360.1\|WP_023297040.1\|4730469_4732407_-\|murein-transglycosylase	unknown	unknown	gnl\|CDD\|183236
NZ_CP047360.1\|WP_002887800.1\|4735732_4737115_-\|DNA-repair-protein-RadA	unknown	unknown	gnl\|CDD\|273067
NZ_CP047360.1\|WP_008807517.1\|4729549_4730065_+\|non-canonical-purine-NTP-phosphatase	unknown	unknown	gnl\|CDD\|235336
NZ_CP047360.1\|WP_049157628.1\|4738847_4739864_+\|lipoate--protein-ligase-LplA	unknown	unknown	gnl\|CDD\|179655
NZ_CP047360.1\|WP_004146033.1\|4743478_4744279_-\|deoxyribose-phosphate-aldolase	unknown	unknown	gnl\|CDD\|235387
NZ_CP047360.1\|WP_012542922.1\|4740766_4741990_-\|phosphopentomutase	unknown	unknown	gnl\|CDD\|235430
NZ_CP047360.1\|WP_008807516.1\|4728788_4729436_-\|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase-GpmB	unknown	unknown	gnl\|CDD\|179583

Protein	Function_ID	Function_description	E-value
NZ_CP047360.1\|WP_012542919.1\|4737124_4738096_-\|phosphoserine-phosphatase	gnl\|CDD\|182988	PRK11133, serB, phosphoserine phosphatase; Provisional.	0
NZ_CP047360.1\|WP_022065753.1\|4744673_4745459_-\|TatD-related-deoxyribonuclease	gnl\|CDD\|171118	PRK11449, PRK11449, metal-dependent hydrolase.	3.80038e-150
NZ_CP047360.1\|WP_012542917.1\|4727239_4727713_-\|protein-CreA	gnl\|CDD\|236752	PRK10756, PRK10756, protein CreA.	4.50228e-120
NZ_CP047360.1\|WP_032732481.1\|4738200_4738848_+\|YtjB-family-periplasmic-protein	gnl\|CDD\|236885	PRK11246, PRK11246, YtjB family periplasmic protein.	6.63302e-147
NZ_CP047360.1\|WP_008807515.1\|4727922_4728792_+\|MDR-efflux-pump-AcrAB-transcriptional-activator-RobA	gnl\|CDD\|185076	PRK15121, PRK15121, MDR efflux pump AcrAB transcriptional activator RobA.	0
NZ_CP047360.1\|WP_008807525.1\|4742042_4743365_-\|thymidine-phosphorylase	gnl\|CDD\|180276	PRK05820, deoA, thymidine phosphorylase; Reviewed.	0
NZ_CP047360.1\|WP_008807518.1\|4730051_4730381_-\|trp-operon-repressor	gnl\|CDD\|179289	PRK01381, PRK01381, trp operon repressor.	2.25263e-51
NZ_CP047360.1\|WP_012968984.1\|4732635_4734303_+\|energy-dependent-translational-throttle-protein-EttA	gnl\|CDD\|236992	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed.	0
NZ_CP047360.1\|WP_002887789.1\|4739944_4740664_-\|purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	7.43873e-174
NZ_CP047360.1\|WP_023339559.1\|4726537_4727227_-\|two-component-system-response-regulator-CreB	gnl\|CDD\|236838	PRK11083, PRK11083, DNA-binding response regulator CreB; Provisional.	2.65201e-155
NZ_CP047360.1\|WP_165454137.1\|4723694_4725053_-\|cell-envelope-integrity-protein-CreD	gnl\|CDD\|236960	PRK11715, PRK11715, cell envelope integrity protein CreD.	0
NZ_CP047360.1\|WP_002887802.1\|4734478_4735711_-\|multifunctional-transcriptional-regulator/nicotinamide-nucleotide-adenylyltransferase/ribosylnicotinamide-kinase-NadR	gnl\|CDD\|236151	PRK08099, PRK08099, multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR.	0
NZ_CP047360.1\|WP_032736642.1\|4725113_4726538_-\|two-component-system-sensor-histidine-kinase-CreC	gnl\|CDD\|236846	PRK11100, PRK11100, sensory histidine kinase CreC; Provisional.	0
NZ_CP047360.1\|WP_023297040.1\|4730469_4732407_-\|murein-transglycosylase	gnl\|CDD\|183236	PRK11619, PRK11619, lytic murein transglycosylase; Provisional.	0
NZ_CP047360.1\|WP_002887800.1\|4735732_4737115_-\|DNA-repair-protein-RadA	gnl\|CDD\|273067	TIGR00416, DNA_repair_protein_RadA_homolog, DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus (SP:P45266) and in Listeria monocytogenes (SP:Q48761) . for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP047360.1\|WP_008807517.1\|4729549_4730065_+\|non-canonical-purine-NTP-phosphatase	gnl\|CDD\|235336	PRK05074, PRK05074, non-canonical purine NTP phosphatase.	7.98477e-112
NZ_CP047360.1\|WP_049157628.1\|4738847_4739864_+\|lipoate--protein-ligase-LplA	gnl\|CDD\|179655	PRK03822, lplA, lipoate-protein ligase A; Provisional.	0
NZ_CP047360.1\|WP_004146033.1\|4743478_4744279_-\|deoxyribose-phosphate-aldolase	gnl\|CDD\|235387	PRK05283, PRK05283, deoxyribose-phosphate aldolase; Provisional.	0
NZ_CP047360.1\|WP_012542922.1\|4740766_4741990_-\|phosphopentomutase	gnl\|CDD\|235430	PRK05362, PRK05362, phosphopentomutase; Provisional.	0
NZ_CP047360.1\|WP_008807516.1\|4728788_4729436_-\|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase-GpmB	gnl\|CDD\|179583	PRK03482, PRK03482, phosphoglycerate mutase GpmB.	6.63469e-161

>NZ_CP047360.1|WP_012968984.1|4732635_4734303_+|energy-dependent-translational-throttle-protein-EttA
MAQFVYTMHRVGKVVPPKRHILKNISLSFFPGAKIGVLGLNGAGKSTLLRIMAGIDTEIEGEARPQPGIKIGYLPQEPQLNPEHTVRESVEEAVAEVVNALKGLDEVYAKYAEPDADFDKLAAQQGKFEEIIQAHDGHNLNVQLERAADALRLPDWDAKIANLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLERFLHDFEGTVVAITHDRYFLDNVAGWILELDRGEGIPWEGNYSSWLEQKDQRLAQEASQEAARRKSIEKELEWVRQGAKGRQSKGKARLARFEELNNVEYQKRNETNELFIPPGARLGDKVLEVSHLRKSYGDRVLIDDLSFSVPKGAIVGIIGPNGAGKSTLFRMMSGQEQPDSGTITLGETVKLASVDQFRDAMDNSKTVWEEVSGGLDIMKIGNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVGGNVLLLDEPTNDLDIETLRALENALLEFPGCAMVISHDRWFLDRIATHILDYQDEGKVEFFEGNFTEYEEYKKRTLGADALEPKRIKYKRIAK
>NZ_CP047360.1|WP_023297040.1|4730469_4732407_-|murein-transglycosylase
MEKAKKMAWRLLAASVGLLTLSQLAHADSLDEQRNRYAQIKQAWDNRQMDVVDQLMPTLSTYPLYPYLQYRQITDDLMNQPALVVKNFIDANPTLPPARSLRSRFVNELARRSDWRGLLAFSPDKPTSTEAQCNYYYAKLSVGQSQEAWSGAKDLWLTGKNQPGACEPLFSAWRDSGQQDPLAYLERIRLAMKAGNIGLVKSLAQQMPGNYQSIASAVVALANDPNSVLTFARTTGATDFTRQMAAVAFASVARQDVENARLMIPSLVQAQQLNEDQTQELRDIVAWRLMGTDVTEEQAIWRDDAIMRSQSTPLVERRVRMALGTGDRHGLNTWLARLPMEAKEKDEWRYWQADLLLERGRDEEAQAILRSLMQQRGFYPMVAAQRLGEEYTFRIDKASGTIDPALASGPEMARVRELMYWNMDNTARTEWANLVTSRTKSQQAQLARYAFDQHWWDLSVQATIAGKLWDQLEERFPLAYNDLFARYISGKDIPQSYAMAIARQESAWNPKVRSPVGASGLMQIMPGTATHTVSMFSIPGYSGPSQLLDPETNINIGTSYLQYVYQQFGNNRIYASAAYNAGPGRVRTWQGNSAGRIDAVAFVESIPFSETRGYVKNVLSYDAYYRYFMGQQDKLFSDAEWRQRY
>NZ_CP047360.1|WP_008807518.1|4730051_4730381_-|trp-operon-repressor
MTQQSPYSAAVAEQRHQEWLRFVALLQQAYAEDLHLPLLQLMLTPDEREALGTRVRIIEELLRGEMSQRELKNELGAGIATITRGSNSLKSAPAELRQWLEQTLLASDK
>NZ_CP047360.1|WP_008807517.1|4729549_4730065_+|non-canonical-purine-NTP-phosphatase
MHHVVSATTNPAKIQAILQAFNEIFGEGSCHIESVSVESGVPEQPFGSEETRAGARNRVANARLVQPSADFWVAIEAGIDDGSTFSWVVIESADRRGEARSATLPLPEVILEQVRAGEALGPVMSQYTGIDQIGRKEGAIGVFTGGKLTRSSVYHQAVVLALSPFHNAIYR
>NZ_CP047360.1|WP_008807516.1|4728788_4729436_-|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase-GpmB
MLQVYLVRHGETQWNAERRIQGQSDSPLTAHGERQAWQVGERARTLGITHIITSDLGRTRRTAEIIAEACGCSVIADARLRELDMGVLEKRHIDSLSDEEEGWRRQLVNGTPDGRIPQGESMQELSERMHAALASCLELPAGSRPLLVSHGIALGCLVSTILGLPAYAERRLRLRNCSISRVDYQQSPWLASGWVVETAGDVSHLDAPAMDELQR
>NZ_CP047360.1|WP_008807515.1|4727922_4728792_+|MDR-efflux-pump-AcrAB-transcriptional-activator-RobA
MDQAGIIRDLLSWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFSLTPALYRRSPDWSSFGMRPPLRLGEFTLPKHEFVALPTTQLLGVTQSYTCKLEEISDFRNQMRVQFWRDFLGNSPSIPPVLYGLHEPRPSLEKDDEQEVFYTTALTPEMANGHLQNAHPVTLEGGEYVMFTYEGLGTGLQEFILTVYGTCMPMLNLTRRKGLDIERFYPEDENRDQATPIQLRCEYLIPIRR
>NZ_CP047360.1|WP_012542917.1|4727239_4727713_-|protein-CreA
MKYKKFAMGLLLLAGCQMAQAEQIGSVDTVFKWLGPDHKIVVEAFDDPDVQNVTCYISRAKTGGIKGGLGLAEDTSDAAISCQQVGPIELTDKIKNGKSQGDVVFQKRTSLVFKKLQVVRFYDAKRNALVYLTYSDKVVDGSPKNAISAVPIMPWNK
>NZ_CP047360.1|WP_023339559.1|4726537_4727227_-|two-component-system-response-regulator-CreB
MQQPRIWLVEDEQSIADTLVYPLQQEGFQVTVFGRGLPALEAAAHQAPDVAILDVGLPDISGFELCRRLLTRYPALPVLFLTARSDEVDKLLGLEIGADDYIAKPFSPREVCARVRTVLRRLQKFAAPSPVVRVGEFVLDEQAASISWFGQPLNLTRYEFLLLKTLLHAPGRVFSRQQLMELVWSDAWESLDRTVDTHIKTLRAKLRAVNPEVTPINTHRGMGYSLGRG
>NZ_CP047360.1|WP_032736642.1|4725113_4726538_-|two-component-system-sensor-histidine-kinase-CreC
MRIGMRLLLGYFLIVAIAAWFVLSIFVQEVKPGVRRATEGTLNDTATLLAALAREDLQAANPQQGRLAQAFQRLNQQPINAHIGGIKKVRNEYRVYLTDARGKVVFDSSGQATGQDYSRWNDVWLTLRGQYGARSTRSDPHDETSSVMYIAAPVMDKGRIIGVLSVGKPNLAMTPVIKRSERRILWAGGALLGIALLIGVGVVWWINFSIGKLVRYADSVTAERPLPLPEVGSSELRKLAQALESMRVKLEGKNAIENYVYDLTHELKSPLAAIRGAAEILREGPPPEVAARFTDNILAQNTRMQLLVERLLHQARLESRLEIKQQPVSIDALYQRLTEERDIALAAKAITLRWRESGMLVNGDGELLAQALGNLLDNAIDFTPQGGEIALAAEKRNEEVQLSVIDNGRGIPDYALERIFERFYSLPREDGHKSSGLGLAFVREVARLHHGDINLHNRPEGGVVATLRLHRPFT
>NZ_CP047360.1|WP_165454137.1|4723694_4725053_-|cell-envelope-integrity-protein-CreD
MLKSPLFWKITTLIGCVVLLSLPLMMVRELINERADYRSEVVDAIEQSTSGSQKLAGPLIAIPITETLTRMENQKEVNYQRSWVYYWLPESLAVTGKQTVESRRVGIYSGQVWHNALQIKASFDPLRLAALRKTNIVLGQPRLVVSVGDARGIGAIHAPEVNGNVLSVEPGLGISGDGAGIHMPMPALAQDNKPLEIAFSLDLNGTGEFSLVPIGRNSELQLTSNWPHPGFLGSFLPTQREVSAAGYRAHWQSSWFANDMGSYFKDDMEIPWSRLPAFSADVMSLADQYQLTDRATKYAILLIGLTFMAFFVFESLTRRPLHPMQYLLVGLSLVLFYLVLLALSEHVGFTAAWLAASLSGAVMNGVYLQAVLRGWRNSLLFVAALLLLDGVMWFLLHSEDSALLLGTGVLVLALSVLMFLTRRVDWYALSLPKGSAPPPPAADDDKLRLWKE
>NZ_CP047360.1|WP_002887802.1|4734478_4735711_-|multifunctional-transcriptional-regulator/nicotinamide-nucleotide-adenylyltransferase/ribosylnicotinamide-kinase-NadR
MSSFDYLKSAIKQKGCTLQQVAEASGMTKGYLSQLLNAKIKSPSAQKLEALHRFLGLEFPRRQKSVGVVFGKFYPLHTGHIYLIQRACSQVDELHIIMGYDDTRDRELFEESAMSQQPTVPDRLRWLLQTFKYQKNIRIHAFNEEGMEPYPHGWDVWSHGIRAFMSEKGIEPNRIYTSEEADAPQYLEHLGIETVLIDPKRTFMNISGGQIRENPFRYWEYIPTEVKPFFVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGRDYVFSHLGGDEMALQYSDYDKIALGHAQYIDFAVKYANKVAFIDTDFVSTQAFCLKYEGREHPFVQALIDEYRFDLVILLENNTPWVADGLRSLGSSVDRKEFQSLLVSLLKENEIEFVHVKESDYDARFLRCVELVKQLMGEQG
>NZ_CP047360.1|WP_002887800.1|4735732_4737115_-|DNA-repair-protein-RadA
MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEMRIAASPQVARNERLSGYAGNAGVSKVQKLSDISLEALPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAEGMKTLYVTGEESLQQVAMRAHRLGLPTANLNMLSETSIEQICQIADEEKPQLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEITSGSSVMVVWEGTRPLLVEIQALVDHSMMSNPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKVPEGMQIFGVKKLSDALSVFDDL
>NZ_CP047360.1|WP_012542919.1|4737124_4738096_-|phosphoserine-phosphatase
MPNSLTWCDLPEDVSLWPGLPLSLSGDEVMPLDYHAGRSGWLLYGRGLNKRRLTDWQRELGAALVIVASWVVEDYQVIRLAGSLTPRATRLAHEAGLDVAPLGKIPHLRTPGLLVMDMDSTAIQIECIDEIAKLAGTGELVSEVTERAMRGELDFTASLRQRVATLKDADATILLQVRDALPLMPGLAQLVLKLETLGWKVAIASGGFTFFAEYLRDKLHLDAVFANELEIRDGKLTGNVLGDIVDAKYKANTLRKLAEKYEIPTAQTVAIGDGANDLPMIKAAGLGIAYHAKPKVNEQAEVTIRHADLMGVFCILSGSMNQK
>NZ_CP047360.1|WP_032732481.1|4738200_4738848_+|YtjB-family-periplasmic-protein
MVRAKLKFRLHRAVIVLICLALLVALMQGASWFSQNSQKQRNPQLEELARTLAQQVVLNLVPLMRSETPDEKRINQLLTQLTHNSRVLDAGVYDEQGDLVTRSGESVEVRDRLALDGKKAGGYFNQQIVEPVPGKNGPLGYLRLTLDTHTLATEAKQVDNTTNILRLMLLLSLAIGVVLTRTLLQGKRTRWQQSPFLLTANKPVEDEDDEKKGNL
>NZ_CP047360.1|WP_049157628.1|4738847_4739864_+|lipoate--protein-ligase-LplA
MSTLRLLLSDSYDPWFNLAVEECIFRQMPATQRVLFLWRNADTVVIGRAQNPWKECNTRRMEEDHVRLARRSSGGGAVFHDLGNTCFTFMAGKPEYDKTVSTAIVLAALNSLGVTAEASGRNDLVVKTDSGDRKVSGSAYRETIDRGFHHGTLLLNADLSRLANYLNPDQKKLQAKGITSVRGRVANLVELLPGITHQHICEAIQEAFFSHYGERVDAEVISPDNTPDLPNFAETFARQSSWEWNFGQAPAFSHLLDERFRWGGVELHFDVEKGHITRTQAFTDSLNPAPLEALAARLVGCQYRAEVLQQQCEALVGDFPEQEAELKELSAWIAGAVR
>NZ_CP047360.1|WP_002887789.1|4739944_4740664_-|purine-nucleoside-phosphorylase
MATPHINAEMGDFADVVLMPGDPLRAKHIAETFLEDVREVNNVRGMLGFTGTYKGRKISVMGHGMGIPSCSIYTKELITDFGVKKIIRVGSCGAVREDVKLRDVVIGMGACTDSKVNRLRFKDHDFAAIADFGMVRNAVDAAKALGVDARVGNIFSADLFYTPDPSMFDVMEKYGILGVEMEAAGIYGVAAEFGAKALTICTVSDHIRTHEQTTAAERQTTFNDMIKIALESVLLGDKE
>NZ_CP047360.1|WP_012542922.1|4740766_4741990_-|phosphopentomutase
MKRAFIMVLDSFGIGATEDADRFGDVGADTMGHIAEACAKGEADNGRKGPLNLPNLTRLGLVKAHEGSTGKIAAGMDGNAEVIGAYAWAHELSSGKDTPSGHWEIAGVPVLFDWGYFSDHENSFPQELLDKLVKRANLPGYLGNCHSSGTVILDQLGEEHMKTGKPIFYTSADSVFQIACHEETFGLDKLYELCEIAREELTEGGYNIGRVIARPFIGDKAGNFQRTGNRHDLAVEPPAPTVLQKLVDEKNGHVVSVGKIADIYANCGITKKVKATGLDALFDATIKEMKEAGDETIVFTNFVDFDSSWGHRRDVAGYAAGLELFDRRLPELMELVGEDDILILTADHGCDPTWTGTDHTREHIPVLVYGPKVKPGSLGHRETFADIGQTIAKYFGTSDMEYGKAMF
>NZ_CP047360.1|WP_008807525.1|4742042_4743365_-|thymidine-phosphorylase
MFLAQEIIRKKRDGHALSDEEIRFFINGIRDNTISEGQIAALAMTIFFHDMSMPERVSLTMAMRDSGTVLNWKSLNLNGPIVDKHSTGGVGDVTSLMLGPMVAACGGYVPMISGRGLGHTGGTLDKLEAIPGFDIFPDDNRFREIIKDVGVAIIGQTSSLAPADKRFYATRDITATVDSIPLITASILAKKLAEGLDALVMDVKVGSGAFMPTYELSAALAEAIVGVANGAGVRTTALLTDMNQVLASSAGNAVEVREAVQFLTGEYRNPRLFDVTMALCVEMLISGKLAADDAEARAKLQAVLDNGKAAEVFGRMVAAQKGPTDFVENYDHYLPTAMLSKAVYADTEGFISAMDTRALGMAVVSMGGGRRQASDTIDYSVGFTDMARLGDHVDGQRPLAVIHAKDENSWQEAAKAVKAAIKLDDKAPEITPTVYRRITE
>NZ_CP047360.1|WP_004146033.1|4743478_4744279_-|deoxyribose-phosphate-aldolase
MTPAEYEMTDLKASSLRALKLMDLTTLNDDDTNEKVIALCHQAKTPVGNTAAVCIYPRFIPIARKTLNEQGTPDIRIATVTNFPHGNDDIDIALAETRAAIAYGADEVDVVFPYRALIAGNEQVGFELVKACKEACAAANVLLKVIIETGELKEEALIRKASEISIKAGADFIKTSTGKVPVNATPESARIMMEVIRDMGVEKTVGFKPAGGVRSAEDAQQFLAIADELFGADWADSRHYRFGASSLLASLLKALGHGDGKSASSY
>NZ_CP047360.1|WP_022065753.1|4744673_4745459_-|TatD-related-deoxyribonuclease
MSHRFIDTHCHFDFPPFAEDETASLARAAQAGVGQIIVPAISAARFNRVLALAAQHEALYAALGMHPIVIEQHADEGLAQLERCLSLRPPKLVAVGEIGLDLYRDDPQFDRQQALLEEQLRLAKRYDLPVILHSRRTHDKLAMLLKKHALPRTGVVHGFAGSLQQAERFVQLGYKIGVGGTITYPRASKTREVMARLPLSALLLETDAPDMPLNGFQGQPNRPEQVARVFDALCELRAEPAPTIEAAVMANTKSLFSALAG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1668238 : 1675985

Planktothrix_phage(16.67%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016161506.1\|1668238_1669012_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.0e-26	37.2
WP_167341190.1\|1669251_1670148_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	4.7e-15	29.8
WP_064754498.1\|1670669_1670870_+	hypothetical protein	A0A0F7LBQ2	Escherichia_phage	3.7e-05	54.5
WP_040219063.1\|1671277_1672885_+	protein kinase	M1HQU0	Paramecium_bursaria_Chlorella_virus	8.1e-10	27.1
WP_167341191.1\|1674132_1674354_+	DNA-binding transcriptional regulator	A0A2I8TV89	Erwinia_phage	2.5e-26	69.9
WP_008804076.1\|1674623_1675985_-\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	1.0e-207	94.8

DBSCAN-SWA_2

1715568 : 1728163

Acanthocystis_turfacea_Chlorella_virus(11.11%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024193811.1\|1715568_1716687_+	GDP-mannose 4,6-dehydratase	M1IBC3	Acanthocystis_turfacea_Chlorella_virus	7.3e-135	65.5
WP_167341202.1\|1716690_1717656_+	GDP-L-fucose synthase	D1LW79	Prochlorococcus_phage	4.2e-86	50.5
WP_001775095.1\|1717659_1718106_+	GDP-mannose mannosyl hydrolase	A0A2I7SA81	Vibrio_phage	4.8e-05	28.8
WP_167341203.1\|1718112_1719339_+	glycosyltransferase WbuB	NA	NA	NA	NA
WP_167341204.1\|1719377_1721006_+	hypothetical protein	K9L8K6	Klebsiella_phage	1.2e-112	43.7
WP_167341205.1\|1721179_1722586_+	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	4.7e-38	28.7
WP_167341206.1\|1722824_1724240_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	5.2e-53	30.8
WP_072045353.1\|1724262_1725633_+	phosphomannomutase CpsG	A0A127AWJ1	Bacillus_phage	1.4e-31	26.1
WP_031589093.1\|1725796_1726963_+	UDP-glucose 6-dehydrogenase	M1I798	Paramecium_bursaria_Chlorella_virus	9.1e-112	54.7
WP_031589100.1\|1727155_1728163_+	NAD-dependent epimerase	E3T4Y8	Cafeteria_roenbergensis_virus	4.4e-30	28.0

DBSCAN-SWA_3

2745719 : 2756598

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_167341297.1\|2745719_2748827_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.3
WP_012968277.1\|2748881_2750147_+	MFS transporter	NA	NA	NA	NA
WP_046619702.1\|2750175_2751264_-	AAA family ATPase	A0A077SLJ9	Escherichia_phage	1.4e-207	97.8
WP_012968279.1\|2751350_2751611_-	hypothetical protein	A0A077SK33	Escherichia_phage	4.6e-40	96.5
WP_023340103.1\|2751905_2752766_+	class A beta-lactamase LEN-2	A0A077SL40	Escherichia_phage	2.3e-144	90.6
WP_008804982.1\|2752783_2753545_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	2.1e-133	99.2
WP_008804983.1\|2753805_2754708_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	1.1e-157	98.7
WP_167341298.1\|2754719_2755985_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	5.8e-229	97.4
WP_012541792.1\|2755977_2756598_+	aldolase	A0A077SK32	Escherichia_phage	5.7e-113	98.1

DBSCAN-SWA_4

2785312 : 2842996

Salmonella_phage(19.61%)

holin,integrase,tail,coat,lysis,terminase

attL 2785217:2785232|attR 2838301:2838316

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2785217:2785232	attL	NA	NA	NA	NA
WP_032421462.1\|2785312_2786068_+	hypothetical protein	A0A159B7L2	Klebsiella_phage	9.1e-129	92.8
WP_167341303.1\|2786479_2787715_-	hypothetical protein	NA	NA	NA	NA
WP_023339178.1\|2787715_2788459_-	hypothetical protein	NA	NA	NA	NA
WP_167341304.1\|2788534_2791603_-	kinase	A0A286S259	Klebsiella_phage	0.0e+00	95.7
WP_071067347.1\|2791599_2791980_-	nitrite transporter	A0A286S2A6	Klebsiella_phage	1.1e-66	92.9
WP_122463474.1\|2791989_2792472_-	DUF1833 family protein	A0A286S2B1	Klebsiella_phage	2.0e-81	95.0
WP_023159427.1\|2792458_2792932_-	hypothetical protein	A0A286S298	Klebsiella_phage	2.5e-60	67.9
WP_167341305.1\|2793664_2796544_-\|tail	phage tail protein	A0A2H4J107	uncultured_Caudovirales_phage	1.1e-102	32.8
WP_167341509.1\|2796645_2796987_-	zinc ribbon domain-containing protein	S4TR42	Salmonella_phage	9.7e-06	43.3
WP_136049606.1\|2797093_2797291_-	hypothetical protein	NA	NA	NA	NA
WP_071582778.1\|2797428_2797911_-	hypothetical protein	NA	NA	NA	NA
WP_142484348.1\|2797948_2798881_-	hypothetical protein	A0A0D4DBN5	Acinetobacter_phage	1.3e-23	27.0
WP_044612636.1\|2798905_2799298_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_012967909.1\|2799294_2799846_-	hypothetical protein	G8C7Q1	Escherichia_phage	5.9e-29	39.9
WP_142484350.1\|2799847_2800231_-	glutamate 5-kinase	A0A0S2SYG4	Pseudomonas_phage	1.3e-19	42.9
WP_049045074.1\|2800217_2800451_-	hypothetical protein	A0A1V0E8A3	Vibrio_phage	3.6e-12	51.5
WP_032421472.1\|2800452_2800863_-	hypothetical protein	A0A0H5AUF0	Pseudomonas_phage	6.6e-09	39.7
WP_004146201.1\|2800866_2801079_-	hypothetical protein	G8C7P8	Escherichia_phage	5.8e-09	53.7
WP_167341306.1\|2801118_2802255_-\|coat	P22 coat - protein 5 family protein	G8C7P7	Escherichia_phage	2.4e-157	76.2
WP_142484351.1\|2802342_2803107_-	hypothetical protein	G8C7P6	Escherichia_phage	3.7e-77	59.4
WP_142484352.1\|2803212_2804325_-	hypothetical protein	I6PD76	Cronobacter_phage	5.8e-108	53.3
WP_142484353.1\|2804326_2805733_-	DUF4055 domain-containing protein	G8C7P4	Escherichia_phage	5.7e-193	71.7
WP_012967901.1\|2805737_2807042_-\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	2.2e-146	60.3
WP_167341307.1\|2807019_2808015_-\|terminase	terminase small subunit	Q5QF76	Pseudomonas_virus	2.0e-35	44.2
WP_004184480.1\|2808573_2808819_-	DUF2560 family protein	A0A286N2R1	Klebsiella_phage	1.6e-34	97.5
WP_032436042.1\|2810094_2810454_-	hypothetical protein	NA	NA	NA	NA
WP_110408973.1\|2810764_2811139_-	TonB family protein	NA	NA	NA	NA
WP_014832162.1\|2812092_2812287_+	DUF2158 domain-containing protein	NA	NA	NA	NA
WP_042935791.1\|2812273_2812546_+	hypothetical protein	NA	NA	NA	NA
WP_167341308.1\|2812702_2812975_+	hypothetical protein	NA	NA	NA	NA
WP_167341309.1\|2812975_2813440_-\|lysis	lysis protein	M9NYX9	Enterobacteria_phage	5.3e-39	58.6
WP_064185515.1\|2813436_2813916_-	glycoside hydrolase family 104 protein	A5VW81	Enterobacteria_phage	1.6e-70	82.4
WP_040230352.1\|2813899_2814223_-\|holin	phage holin, lambda family	G5DA93	Enterobacteria_phage	8.0e-42	80.4
WP_032741138.1\|2814854_2815481_-	YagU family protein	NA	NA	NA	NA
WP_167341310.1\|2815733_2816549_-	antitermination protein	A0A286N2Q2	Klebsiella_phage	4.0e-106	73.0
WP_167341311.1\|2816545_2816842_-	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	9.2e-37	74.0
WP_023322448.1\|2817050_2817647_-	DUF1367 family protein	K7PKS6	Enterobacteria_phage	8.5e-90	80.1
WP_023304767.1\|2817682_2817916_-	hypothetical protein	A0A0M4R5D9	Salmonella_phage	9.9e-18	57.1
WP_167341312.1\|2818607_2818880_-	colicin immunity protein	NA	NA	NA	NA
WP_032755662.1\|2819026_2819290_-	hypothetical protein	NA	NA	NA	NA
WP_060657081.1\|2819869_2820319_-	hypothetical protein	A0A088FQM9	Escherichia_phage	4.4e-06	37.5
WP_167341510.1\|2820916_2821255_-	hypothetical protein	NA	NA	NA	NA
WP_012967878.1\|2821864_2822089_-	hypothetical protein	S4TVX5	Salmonella_phage	6.4e-14	50.0
WP_048262302.1\|2822085_2822568_-	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	2.3e-69	78.6
WP_040230340.1\|2822564_2822801_-	hypothetical protein	A0A2R2Z309	Escherichia_phage	6.7e-30	85.5
WP_167341313.1\|2822793_2822997_-	hypothetical protein	A0A2R2Z313	Escherichia_phage	2.6e-30	94.0
WP_038807814.1\|2822993_2823362_-	DUF977 family protein	H6WRX9	Salmonella_phage	8.3e-11	43.0
WP_167341314.1\|2823369_2824119_-	ATP-binding protein	S4TNF5	Salmonella_phage	3.3e-115	80.7
WP_167341511.1\|2824121_2824961_-	hypothetical protein	S5MC07	Escherichia_phage	2.3e-24	54.0
WP_101139511.1\|2825026_2825821_-	hypothetical protein	C7BGF1	Burkholderia_phage	1.3e-64	51.7
WP_101139512.1\|2825949_2826486_-	hypothetical protein	K7PJT7	Enterobacteria_phage	5.0e-65	72.3
WP_023322439.1\|2826476_2826716_-	hypothetical protein	A0A0M4QX15	Salmonella_phage	4.4e-29	79.2
WP_101139513.1\|2826819_2827206_+	helix-turn-helix domain-containing protein	A0A0M4R5D1	Salmonella_phage	4.7e-57	92.1
WP_133124691.1\|2827356_2828265_+	hypothetical protein	A4KWU2	Enterobacteria_phage	1.6e-71	47.4
WP_165790272.1\|2828375_2828534_-	hypothetical protein	A0A192Y6Q5	Salmonella_phage	3.8e-05	61.4
WP_133124692.1\|2828773_2829037_+	hypothetical protein	NA	NA	NA	NA
WP_064142429.1\|2829000_2829270_-	hypothetical protein	NA	NA	NA	NA
WP_004179600.1\|2829560_2829752_+	YebW family protein	NA	NA	NA	NA
WP_101139515.1\|2829760_2829916_+	hypothetical protein	K7P7H7	Enterobacteria_phage	9.8e-14	71.2
WP_167341315.1\|2830053_2833158_+	exodeoxyribonuclease	H6WRX1	Salmonella_phage	4.8e-293	58.6
WP_167341316.1\|2833170_2834259_+	recombinase RecT	H6WRX0	Salmonella_phage	6.1e-102	53.0
WP_049140091.1\|2834293_2834941_+	hypothetical protein	R9VWB9	Serratia_phage	2.3e-56	53.1
WP_167341317.1\|2834937_2835246_+	hypothetical protein	I6PD68	Cronobacter_phage	5.5e-24	56.9
WP_080928696.1\|2835253_2835493_+	DUF4060 family protein	M9P0E0	Enterobacteria_phage	8.5e-25	71.8
WP_072041118.1\|2835552_2835810_+	hypothetical protein	NA	NA	NA	NA
WP_044613034.1\|2835790_2836930_+\|integrase	tyrosine-type recombinase/integrase	Q77Z04	Phage_21	1.2e-92	48.2
WP_163590234.1\|2837080_2839126_-	peptidyl-dipeptidase Dcp	A0A1V0SIU1	Klosneuvirus	8.7e-17	20.0
2838301:2838316	attR	NA	NA	NA	NA
WP_167341318.1\|2839256_2840006_+	bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG	NA	NA	NA	NA
WP_008805006.1\|2840097_2840784_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_008805007.1\|2840834_2841266_-	universal stress protein	A0A1W6JNV4	Morganella_phage	3.6e-21	40.0
WP_101856637.1\|2841532_2842996_-	fructuronate reductase	H8ZJP8	Ostreococcus_tauri_virus	1.5e-42	30.2

DBSCAN-SWA_5

3268752 : 3405997

154

Klebsiella_phage(35.23%)

holin,portal,head,integrase,tail,lysis,tRNA,capsid,protease,terminase

attL 3295680:3295696|attR 3404051:3404067

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_008807680.1\|3268752_3269253_+\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
WP_012968512.1\|3269370_3269817_+	DUF441 domain-containing protein	NA	NA	NA	NA
WP_162494479.1\|3270702_3271878_+	CynX/NimT family MFS transporter	NA	NA	NA	NA
WP_023322389.1\|3271909_3272602_-	CTP synthase	NA	NA	NA	NA
WP_012968516.1\|3272747_3273257_+	DUF523 domain-containing protein	NA	NA	NA	NA
WP_162493323.1\|3273261_3273600_+	DUF488 family protein	NA	NA	NA	NA
WP_016160701.1\|3273589_3273829_-	DUF333 domain-containing protein	NA	NA	NA	NA
WP_023297404.1\|3274130_3275144_+	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.4e-12	29.0
WP_004150782.1\|3275201_3275303_+	YoaK family small membrane protein	NA	NA	NA	NA
WP_004213093.1\|3275302_3275377_+	protein YoaJ	NA	NA	NA	NA
WP_012542130.1\|3275496_3275622_+	hypothetical protein	NA	NA	NA	NA
WP_004203731.1\|3275681_3275945_-	DUF2534 family protein	NA	NA	NA	NA
WP_004203730.1\|3276075_3276714_-	leucine efflux protein LeuE	NA	NA	NA	NA
WP_008807690.1\|3276803_3277718_-	kdo(2)-lipid IV(A) palmitoleoyltransferase	A0A1W6JP29	Morganella_phage	3.2e-72	50.0
WP_012542131.1\|3278375_3279419_-	type II asparaginase	NA	NA	NA	NA
WP_049010394.1\|3279727_3280936_+	HD domain-containing protein	NA	NA	NA	NA
WP_032730063.1\|3281009_3282794_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	5.8e-17	36.1
WP_012968530.1\|3282800_3283691_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_167341348.1\|3283811_3285314_+	UbiD family decarboxylase	NA	NA	NA	NA
WP_032730058.1\|3285389_3285800_-	hypothetical protein	NA	NA	NA	NA
WP_016160694.1\|3285929_3286616_-	EAL domain-containing protein	NA	NA	NA	NA
WP_032691162.1\|3287083_3287272_+	hypothetical protein	NA	NA	NA	NA
WP_008807698.1\|3287250_3287883_-	DNA-binding protein	NA	NA	NA	NA
WP_004140506.1\|3288455_3288653_+	hypothetical protein	NA	NA	NA	NA
WP_012542139.1\|3288711_3289506_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_167341349.1\|3289583_3291635_+	FUSC family protein	NA	NA	NA	NA
WP_012968537.1\|3291627_3291840_+	DUF1656 domain-containing protein	NA	NA	NA	NA
WP_080930051.1\|3291836_3292757_+	HlyD family secretion protein	NA	NA	NA	NA
WP_012542144.1\|3292750_3293761_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_012542145.1\|3293757_3295164_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_032735269.1\|3295219_3296107_-	manganese catalase family protein	NA	NA	NA	NA
3295680:3295696	attL	NA	NA	NA	NA
WP_008807706.1\|3296123_3296630_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_008807707.1\|3296656_3297151_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_004150795.1\|3297240_3297426_-	general stress protein	NA	NA	NA	NA
WP_008807708.1\|3298036_3299230_+	glutathione-dependent formaldehyde dehydrogenase	NA	NA	NA	NA
WP_012542149.1\|3299337_3299565_+	DUF1272 domain-containing protein	NA	NA	NA	NA
WP_167341350.1\|3299619_3300165_-	cysteine hydrolase	NA	NA	NA	NA
WP_022066229.1\|3300455_3301097_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_022066230.1\|3301269_3301743_+	OsmC family protein	NA	NA	NA	NA
WP_012542151.1\|3301879_3302203_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_022066231.1\|3302195_3302588_+	ACT domain-containing protein	NA	NA	NA	NA
WP_022066232.1\|3302584_3303298_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_032730035.1\|3303635_3304109_-	hypothetical protein	NA	NA	NA	NA
WP_022066233.1\|3304105_3304444_-	hypothetical protein	NA	NA	NA	NA
WP_004892953.1\|3304841_3304994_-	isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-18	92.0
WP_049115092.1\|3305643_3306336_-	EAL domain-containing protein	NA	NA	NA	NA
WP_032430712.1\|3306691_3307750_-	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	6.1e-14	31.1
WP_049115089.1\|3308172_3309597_-\|tail	tail fiber domain-containing protein	A0A0P0IDN1	Klebsiella_phage	5.9e-97	54.2
WP_167341351.1\|3309659_3322367_-	DUF1983 domain-containing protein	Q6UAW1	Klebsiella_phage	0.0e+00	47.5
WP_023159867.1\|3322429_3323023_-\|tail	tail assembly protein	K7PHE5	Enterobacteria_phage	2.2e-77	75.6
WP_032429394.1\|3323074_3323422_-	hypothetical protein	NA	NA	NA	NA
WP_023317958.1\|3323454_3324165_-	C40 family peptidase	Q6UAW4	Klebsiella_phage	2.5e-136	90.3
WP_014907809.1\|3324166_3324922_-\|tail	phage minor tail protein L	Q6UAW5	Klebsiella_phage	1.2e-125	81.3
WP_014228916.1\|3324918_3325257_-\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	8.3e-58	89.3
WP_167341352.1\|3325256_3328592_-\|tail	phage tail tape measure protein	Q6UAW7	Klebsiella_phage	0.0e+00	87.0
WP_071603425.1\|3328591_3328804_-	hypothetical protein	Q6UAW9	Klebsiella_phage	3.7e-32	88.9
WP_014228914.1\|3328824_3329190_-\|tail	phage tail protein	Q6UAW8	Klebsiella_phage	1.6e-51	89.3
WP_023328090.1\|3329247_3329709_-	hypothetical protein	Q6UAX0	Klebsiella_phage	7.8e-67	83.7
WP_049115079.1\|3329740_3330142_-	HK97 gp10 family phage protein	Q6UAX1	Klebsiella_phage	5.1e-62	93.2
WP_017880258.1\|3330138_3330528_-	hypothetical protein	Q6UAX2	Klebsiella_phage	9.6e-58	86.0
WP_048290172.1\|3330508_3330847_-\|head	phage head closure protein	Q6UAX3	Klebsiella_phage	3.7e-50	84.8
WP_020317538.1\|3330843_3331161_-\|head,tail	phage gp6-like head-tail connector protein	Q6UAX4	Klebsiella_phage	1.5e-45	89.8
WP_049115072.1\|3331141_3331456_-	hypothetical protein	Q6UAX5	Klebsiella_phage	1.3e-17	79.2
WP_049115070.1\|3331514_3332801_-\|capsid	phage major capsid protein	Q6UAX6	Klebsiella_phage	8.3e-207	86.2
WP_167341353.1\|3332878_3333799_-	S49 family peptidase	Q6UAX7	Klebsiella_phage	7.3e-149	88.2
WP_049115065.1\|3333835_3335095_-\|portal	phage portal protein	Q6UAX8	Klebsiella_phage	1.5e-221	89.8
WP_020318187.1\|3335094_3335274_-	hypothetical protein	Q6UAX9	Klebsiella_phage	6.8e-11	57.9
WP_021462603.1\|3335267_3336989_-\|terminase	terminase large subunit	Q7Y413	Yersinia_phage	1.5e-190	57.4
WP_012542168.1\|3336988_3337423_-\|terminase	phage terminase small subunit P27 family	A0A1J0GV10	Halomonas_phage	9.4e-30	61.9
WP_032429123.1\|3337670_3338099_-	hypothetical protein	Q6UAS0	Klebsiella_phage	8.1e-42	62.0
WP_023289183.1\|3338098_3338422_-	hypothetical protein	NA	NA	NA	NA
WP_032428746.1\|3338373_3338736_-	HNH endonuclease	Q6UAS2	Klebsiella_phage	1.2e-57	83.3
WP_162924227.1\|3338719_3338884_-	hypothetical protein	NA	NA	NA	NA
WP_167341354.1\|3339062_3339287_+	hypothetical protein	NA	NA	NA	NA
WP_049115059.1\|3339325_3339763_-	hypothetical protein	NA	NA	NA	NA
WP_016160650.1\|3340712_3341063_-	hypothetical protein	R9TPM9	Aeromonas_phage	7.9e-11	38.1
WP_023317653.1\|3341059_3341557_-	lysozyme	A0A1V0E5Q7	Salmonella_phage	3.7e-78	85.2
WP_016160648.1\|3341556_3341772_-\|lysis	phage S lysis protein	A5LH82	Enterobacteria_phage	2.7e-30	88.7
WP_139042930.1\|3342689_3342809_+	small membrane protein	NA	NA	NA	NA
WP_004147997.1\|3343577_3343781_+	hypothetical protein	NA	NA	NA	NA
WP_117137684.1\|3344024_3344627_-	hypothetical protein	H9C175	Pectobacterium_phage	2.4e-76	68.1
WP_117137685.1\|3344643_3345675_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	2.8e-96	49.6
WP_049114843.1\|3345874_3346267_-	DNA-binding protein	K7PHB4	Enterobacterial_phage	4.7e-12	36.6
WP_077253592.1\|3346307_3346598_-	hypothetical protein	H6WRY6	Salmonella_phage	1.4e-16	56.9
WP_012542186.1\|3346609_3346843_-	DinI family protein	K7PM44	Enterobacteria_phage	1.7e-25	71.1
WP_112162509.1\|3348480_3350118_-	CMP deaminase	NA	NA	NA	NA
WP_065804438.1\|3350380_3350821_-	hypothetical protein	NA	NA	NA	NA
WP_166673290.1\|3350834_3351506_-	replication protein	A0A0U2JGJ0	Escherichia_phage	1.3e-62	71.5
WP_017898969.1\|3352355_3352910_-	hypothetical protein	NA	NA	NA	NA
WP_004147982.1\|3352912_3353134_-	Cro/Cl family transcriptional regulator	H6WRX5	Salmonella_phage	1.2e-28	75.3
WP_025861419.1\|3353269_3353659_+	transcriptional regulator	H6WRX4	Salmonella_phage	5.5e-37	64.3
WP_063002092.1\|3354475_3354670_+	DUF1482 family protein	NA	NA	NA	NA
WP_014228879.1\|3354712_3355057_+	transcriptional regulator	NA	NA	NA	NA
WP_112201694.1\|3355198_3357337_+	exonuclease	S4TNL0	Salmonella_phage	2.1e-98	43.1
WP_012542206.1\|3357389_3357635_+	excisionase	NA	NA	NA	NA
WP_110228966.1\|3357615_3358743_+\|integrase	tyrosine-type recombinase/integrase	O21925	Phage_21	4.4e-119	58.4
WP_004892953.1\|3358860_3359013_-	isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-18	92.0
WP_071592550.1\|3359545_3360355_-	chaperonin	A0A0F7L9X0	Escherichia_phage	7.9e-139	82.9
WP_080819782.1\|3360601_3361279_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.3e-81	61.3
WP_080819783.1\|3361471_3362362_-	HNH endonuclease	K7PK19	Enterobacteria_phage	4.3e-162	91.9
WP_071195274.1\|3362358_3363936_-	AAA family ATPase	K7PHD1	Enterobacteria_phage	5.3e-288	95.4
WP_080819785.1\|3364200_3365466_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	1.8e-209	83.6
WP_004179627.1\|3365467_3365887_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-36	58.3
WP_001333465.1\|3366435_3366858_-	hypothetical protein	K7P834	Enterobacteria_phage	2.8e-26	45.3
WP_080819790.1\|3366908_3367487_-	recombinase family protein	A0A286S1P7	Klebsiella_phage	2.3e-92	96.7
WP_032421462.1\|3369435_3370191_+	hypothetical protein	A0A159B7L2	Klebsiella_phage	9.1e-129	92.8
WP_167341355.1\|3370602_3371838_-	hypothetical protein	NA	NA	NA	NA
WP_167341356.1\|3371838_3372582_-	hypothetical protein	NA	NA	NA	NA
WP_167341357.1\|3372657_3375726_-	kinase	A0A286S259	Klebsiella_phage	0.0e+00	97.0
WP_112293702.1\|3375722_3376103_-	nitrite transporter	A0A286S2A6	Klebsiella_phage	2.9e-67	92.1
WP_023304945.1\|3376113_3376596_-	DUF1833 family protein	A0A286S2B1	Klebsiella_phage	3.3e-84	97.5
WP_071599323.1\|3376582_3377056_-	hypothetical protein	A0A286S298	Klebsiella_phage	7.8e-54	61.5
WP_085318978.1\|3377055_3379752_-\|tail	phage tail tape measure protein	K7PKR0	Enterobacteria_phage	5.8e-202	62.7
WP_032420719.1\|3379732_3380050_-\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	1.4e-19	51.5
WP_020804327.1\|3380070_3380466_-\|tail	phage tail protein	M9NZD7	Enterobacteria_phage	3.7e-09	28.4
WP_023304948.1\|3380508_3380991_-	hypothetical protein	M9NYX0	Enterobacteria_phage	5.7e-60	68.6
WP_020804325.1\|3380998_3381397_-\|tail	phage tail protein	K7PHM6	Enterobacterial_phage	3.2e-40	57.8
WP_020804335.1\|3381393_3381945_-\|tail	phage tail protein	K7P7A8	Enterobacteria_phage	9.1e-54	67.9
WP_020317349.1\|3381934_3382228_-	sugar ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_020804328.1\|3382220_3382547_-	DUF2190 family protein	K7PJY3	Enterobacterial_phage	4.0e-33	65.4
WP_040164891.1\|3382627_3384643_-\|protease	Clp protease ClpP	K7PKX4	Enterobacterial_phage	0.0e+00	84.6
WP_112293704.1\|3384587_3386087_-\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	9.5e-247	83.2
WP_014228569.1\|3386083_3386299_-	hypothetical protein	A5LH28	Enterobacteria_phage	7.7e-25	77.1
WP_049095303.1\|3386295_3388404_-\|terminase	phage terminase large subunit family protein	K7PH52	Enterobacterial_phage	0.0e+00	83.6
WP_014228567.1\|3388403_3388895_-	DUF1441 family protein	K7PJY2	Enterobacterial_phage	6.4e-67	84.0
WP_071785246.1\|3389215_3389401_-	hypothetical protein	Q8W634	Enterobacteria_phage	1.9e-11	61.1
WP_163523724.1\|3389467_3389845_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_112293706.1\|3389953_3390199_-	DUF2560 family protein	A0A286N2R1	Klebsiella_phage	3.2e-35	97.5
WP_004886681.1\|3390341_3390683_-	cell envelope integrity protein TolA	NA	NA	NA	NA
WP_112293707.1\|3390771_3390966_-	hypothetical protein	A0A286SGR9	Klebsiella_phage	6.7e-20	86.0
WP_112293709.1\|3390919_3391192_-	hypothetical protein	A0A286N2Q8	Klebsiella_phage	5.0e-05	69.2
WP_004886674.1\|3391188_3391536_-	hypothetical protein	A0A286N2Q7	Klebsiella_phage	1.5e-38	78.3
WP_112293710.1\|3391532_3392072_-	glycoside hydrolase family 108 protein	A0A286N2Q6	Klebsiella_phage	3.3e-101	98.3
WP_112293712.1\|3392074_3392422_-\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	3.0e-39	72.0
WP_108978910.1\|3392676_3393156_+	hypothetical protein	F1C594	Cronobacter_phage	1.3e-40	56.8
WP_024623190.1\|3393238_3393817_-	DUF1133 family protein	A0A0U2S606	Escherichia_phage	9.3e-49	56.1
WP_112293713.1\|3393830_3394811_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.9e-134	67.2
WP_112293716.1\|3394919_3395834_-	transcriptional regulator	H2DE83	Erwinia_phage	1.4e-30	60.6
WP_112293718.1\|3395790_3396003_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	1.1e-15	70.9
WP_000230161.1\|3396240_3396702_-	hypothetical protein	K7PJS5	Enterobacterial_phage	3.8e-69	87.5
WP_001191665.1\|3396736_3396979_-	helix-turn-helix transcriptional regulator	A0A1C9IHV8	Salmonella_phage	1.3e-25	80.3
WP_112293719.1\|3397076_3397772_+	helix-turn-helix transcriptional regulator	Q8HAA0	Salmonella_phage	2.1e-87	71.3
WP_112293721.1\|3398134_3398434_+	hypothetical protein	K7PJS4	Enterobacterial_phage	3.6e-12	46.7
WP_104457818.1\|3398433_3399219_+	hypothetical protein	A4JX52	Burkholderia_virus	3.8e-61	50.2
WP_040164855.1\|3399346_3399691_+	hypothetical protein	NA	NA	NA	NA
WP_048332717.1\|3399683_3400166_+	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	1.4e-71	81.3
WP_040164850.1\|3400162_3400438_+	hypothetical protein	NA	NA	NA	NA
WP_071592590.1\|3400434_3400707_+	hypothetical protein	K7PKM4	Enterobacterial_phage	1.7e-13	47.1
WP_000089156.1\|3400736_3400973_+	excisionase	NA	NA	NA	NA
WP_167341358.1\|3400962_3402105_+\|integrase	tyrosine-type recombinase/integrase	Q77Z02	Phage_21	5.9e-172	81.4
WP_008806032.1\|3402217_3403468_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	92.6
WP_023297373.1\|3403708_3404359_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
3404051:3404067	attR	NA	NA	NA	NA
WP_008806030.1\|3404375_3404834_+	NUDIX hydrolase	NA	NA	NA	NA
WP_012542211.1\|3404890_3405997_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA

DBSCAN-SWA_6

3698367 : 3707815

Brazilian_cedratvirus(16.67%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023297317.1\|3698367_3700089_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	4.5e-14	34.0
WP_008805841.1\|3700128_3700833_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|3701184_3701403_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_012542332.1\|3701521_3703801_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	3.7e-165	42.0
WP_002896520.1\|3703831_3704149_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
WP_002896516.1\|3704474_3704696_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
WP_008805839.1\|3704762_3706703_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	2.9e-38	41.0
WP_008805838.1\|3706699_3707815_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP047360

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection