CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP048048	Clavibacter michiganensis subsp. capsici strain 1106 plasmid pCM2_1106, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP048047	Clavibacter michiganensis subsp. capsici strain 1106 chromosome, complete genome	2 crisprs	csa3,WYL,DEDDh,cas3,PD-DExK	0	2	2	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP048047_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048047_1

669082-669694

Orphan

Consensus_repeat	Method
GAGCGTCCNTCNTACNNCG	CRT

9 spacers

The CRISPR arrays of NZ_CP048047_1

>merge|NZ_CP048047|1|669082-669694|CRT
GAGCGTCCCTCCTCCGGTGGCGGCGCGTACGACCGCGGCCAGCGCGGCGAGCGTCCCTCCTACGGCGCCGAGCGCGGACAACGCTCCGAGCGTCCCTCGTACGGCAACGACCGTCCGGCCCGTGGTGGCGAGCGGTCCGAGCGTCCCTCCTACAACGACCGCGCGCCGCGCAACGAGCGTCCGTCCTACAACGACCGCGCGCCGCGCAACGAGCGTCCGTCCTACAACGACCGCGCGCCGCGCAACGAGCGTCCCTCGTACGGGAACGACCGGCCGCAGCGGTCGGAGCGTCCGTCGTACAGCGACCGGAACGAGCGCCCCTCGTACAACGACCGCAACAGCCGCTCGGAGCGTCCTGCGTACAACGACCGCGCCCAGCGCAGCGAGCGTCCGTCCTACAACGACTCGCGCCCGGCCCGCTCGGAGCGTCCGTCGTACGGCGACCGCGCCGAGCGCCCGTCGTACGACGACCGCCCGGCCCGCGCCGAGCGTCCCGCGTACGGCGACCGCCCGGCCCGCACGGAGCGTCCCTCCTACGGCGACCGCCCGCAGCGGTCCGAGCGTCCCTCCTACGGCGACCGCCCCCAGCGCAGCGAGCGCCCGTCCTACGACG

>NZ_CP048047|1|1|669082-669694|CRT
GAGCGTCCCTCCTCCGGTG	GCGGCGCGTACGACCGCGGCCAGCGCGGC
GAGCGTCCCTCCTACGGCG	CCGAGCGCGGACAACGCTCC
GAGCGTCCCTCGTACGGCA	ACGACCGTCCGGCCCGTGGTGGCGAGCGGTCC
GAGCGTCCCTCCTACAACG	ACCGCGCGCCGCGCAACGAGCGTCCGTCCTACAACGACCGCGCGCCGCGCAAC
GAGCGTCCGTCCTACAACG	ACCGCGCGCCGCGCAACGAGCGTCCCTCGTACGGGAACGACCGGCCGCAGCGGTCG
GAGCGTCCGTCGTACAGCG	ACCGGAACGAGCGCCCCTCGTACAACGACCGCAACAGCCGCTCG
GAGCGTCCTGCGTACAACG	ACCGCGCCCAGCGCAGCGAGCGTCCGTCCTACAACGACTCGCGCCCGGCCCGCTCG
GAGCGTCCGTCGTACGGCG	ACCGCGCCGAGCGCCCGTCGTACGACGACCGCCCGGCCCGCGCCGAGCGTCCCGCGTACGGCGACCGCCCGGCCCGCACG
GAGCGTCCCTCCTACGGCG	ACCGCCCGCAGCGGTCCGAGCGTCCCTCCTACGGCGACCGCCCCCAGCGCAGC
GAGCGCCCGTCCTACGACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048047.1\|WP_167436077.1\|681470_681800_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048047.1\|WP_167436065.1\|661433_662096_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048047.1\|WP_162232635.1\|658510_659566_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048047.1\|WP_167436064.1\|660177_661437_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NZ_CP048047.1\|WP_167437340.1\|671091_671619_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NZ_CP048047.1\|WP_167436073.1\|675973_676915_+\|deoxyribose-phosphate-aldolase	unknown	unknown	gnl\|CDD\|273890
NZ_CP048047.1\|WP_167436074.1\|676966_678472_+\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143404
NZ_CP048047.1\|WP_167436071.1\|674414_674906_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224168
NZ_CP048047.1\|WP_167436072.1\|675017_675977_+\|5-dehydro-2-deoxygluconokinase	unknown	unknown	gnl\|CDD\|275175
NZ_CP048047.1\|WP_167437339.1\|665192_668435_+\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NZ_CP048047.1\|WP_167436076.1\|679467_681384_+\|3D-(3,5/4)-trihydroxycyclohexane-1,2-dione-acylhydrolase-(decyclizing)	unknown	unknown	gnl\|CDD\|275170
NZ_CP048047.1\|WP_167436063.1\|659627_660170_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376387
NZ_CP048047.1\|WP_053773783.1\|663315_664353_-\|UDP-glucose-4-epimerase-GalE	unknown	unknown	gnl\|CDD\|224012
NZ_CP048047.1\|WP_167436070.1\|673012_674230_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237178
NZ_CP048047.1\|WP_167436066.1\|662092_663319_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048047.1\|WP_167436069.1\|671657_673016_-\|DUF4041-domain-containing-protein	unknown	unknown	gnl\|CDD\|214947
NZ_CP048047.1\|WP_167436062.1\|657596_658514_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379703
NZ_CP048047.1\|WP_167436075.1\|678517_679471_+\|5-deoxy-glucuronate-isomerase	unknown	unknown	gnl\|CDD\|377429
NZ_CP048047.1\|WP_167436067.1\|664605_665004_-\|DUF2256-and-DUF3253-domain-containing-protein	unknown	unknown	gnl\|CDD\|371633
NZ_CP048047.1\|WP_053773774.1\|656509_657664_+\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|99734

Protein	Function_ID	Function_description	E-value
NZ_CP048047.1\|WP_167436064.1\|660177_661437_-\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.81765e-32
NZ_CP048047.1\|WP_167437340.1\|671091_671619_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	5.95092e-35
NZ_CP048047.1\|WP_167436076.1\|679467_681384_+\|3D-(3,5/4)-trihydroxycyclohexane-1,2-dione-acylhydrolase-(decyclizing)	gnl\|CDD\|275170	TIGR04377, 3D-35/4-trihydroxycyclohexane-12-dione_hydrolase, 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase. Members of this protein family, 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase (iolD), represent one of eight enzymes in a pathway converting myo-inositol to acetyl-CoA. IolD hydrolyzes the cyclic molecule 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione to yield 5-deoxy-D-glucuronic acid. TPP is a cofactor. [Energy metabolism, Sugars].	0
NZ_CP048047.1\|WP_167436074.1\|676966_678472_+\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	gnl\|CDD\|143404	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.	0
NZ_CP048047.1\|WP_167436071.1\|674414_674906_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224168	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane].	2.21004e-15
NZ_CP048047.1\|WP_167436072.1\|675017_675977_+\|5-dehydro-2-deoxygluconokinase	gnl\|CDD\|275175	TIGR04382, myo-inositol_catabolism_protein, 5-dehydro-2-deoxygluconokinase. All members of the seed alignment for this model are translated from the iolC gene of known or putative inositol catabolism operons. Members with characterized function are 5-dehydro-2-deoxygluconokinase, the enzyme catalyzing the fifth step in degradation from myo-inositol or closely related compounds. Note that many members of this family are fusion proteins with an additional C-terminal domain, of unknown function, described by pfam09863. [Energy metabolism, Sugars].	1.74702e-150
NZ_CP048047.1\|WP_167437339.1\|665192_668435_+\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NZ_CP048047.1\|WP_167436063.1\|659627_660170_-\|hypothetical-protein	gnl\|CDD\|376387	pfam00800, PDT, Prephenate dehydratase. This protein is involved in Phenylalanine biosynthesis. This protein catalyzes the decarboxylation of prephenate to phenylpyruvate.	0.00201495
NZ_CP048047.1\|WP_053773783.1\|663315_664353_-\|UDP-glucose-4-epimerase-GalE	gnl\|CDD\|224012	COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane].	8.26473e-116
NZ_CP048047.1\|WP_167436070.1\|673012_674230_-\|hypothetical-protein	gnl\|CDD\|237178	PRK12705, PRK12705, hypothetical protein; Provisional.	0.0018833
NZ_CP048047.1\|WP_053773774.1\|656509_657664_+\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|99734	cd00609, AAT_like, Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein.	4.65874e-55
NZ_CP048047.1\|WP_167436069.1\|671657_673016_-\|DUF4041-domain-containing-protein	gnl\|CDD\|214947	smart00974, T5orf172, This entry represents the putative helicase A859L.	1.53596e-17
NZ_CP048047.1\|WP_167436062.1\|657596_658514_-\|hypothetical-protein	gnl\|CDD\|379703	pfam14833, NAD_binding_11, NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase. 3-Hydroxyisobutyrate is a central metabolite in the valine catabolic pathway, and is reversibly oxidized to methylmalonate semi-aldehyde by a specific dehydrogenase belonging to the 3-hydroxyacid dehydrogenase family. The reaction is NADP-dependent and this region of the enzyme binds NAD. The NAD-binding domain of 6-phosphogluconate dehydrogenase adopts an alpha helical structure.	0.00243846
NZ_CP048047.1\|WP_167436075.1\|678517_679471_+\|5-deoxy-glucuronate-isomerase	gnl\|CDD\|377429	pfam04962, KduI, KduI/IolB family. This family includes the 5-keto 4-deoxyuronate isomerase enzyme EC:5.3.1.17 that is involved in pectin degradation. This family aldo includes bacterial Myo-inositol catabolism (IolB) proteins. The Bacillus subtilis inositol operon (iolABCDEFGHIJ) is involved in myo-inositol catabolism. Glucose repression of the iol operon induced by inositol is exerted through catabolite repression mediated by CcpA and the iol induction system mediated by IolR. The exact function of IolB is unknown. Members of this family possess a Cupin like structure.	1.97092e-91
NZ_CP048047.1\|WP_167436067.1\|664605_665004_-\|DUF2256-and-DUF3253-domain-containing-protein	gnl\|CDD\|371633	pfam11625, DUF3253, Protein of unknown function (DUF3253). This bacterial family of proteins has no known function.	2.74082e-33
NZ_CP048047.1\|WP_167436073.1\|675973_676915_+\|deoxyribose-phosphate-aldolase	gnl\|CDD\|273890	TIGR01949, AroFGH_arch, predicted phospho-2-dehydro-3-deoxyheptonate aldolase. This model represents a clade of sequences related to fructose-bisphosphate aldolase (class I, included within pfam01791). The members of this clade appear to be phospho-2-dehydro-3-deoxyheptonate aldolases. This enzyme is the first step of the chorismate biosynthesis pathway. Evidence for this assignment is based on gene clustering and phylogenetic profiling. A group of species lack members of the three other types of phospho-2-dehydro-3-deoxyheptonate aldolase (represented by TIGR00034, TIGR01358 and TIGR01361), and also aparrently lack the well-known forms of step 2 (3-dehydroquinate synthase), but contain all other steps of the pathway: Desulfovibrio, Aquifex, Archaeoglobus, Halobacterium, Methanopyrus, Methanococcus and Methanobacterium. The clade of sequences represented here is limited strictly to this group of organisms. In Desulfovibrio, Aquifex, Archaeoglobus, Halobacterium and Methanosarcina the genes found by this model are clustered with other genes from the chorismate, phenylalanine, tyrosine and tryptophan biosynthesis pathways. In addition, these genes in Desulfovibrio, Archaeoglobus, Halobacterium, Methanosarcina and Methanopyrus are adjacent to a gene which hits pfam01959 which also has the property of having members only in those species which lack steps 1 and 2. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.	1.42794e-05

>NZ_CP048047.1|WP_167437339.1|665192_668435_+|efflux-RND-transporter-permease-subunit
MHLLSVFSLRNRALIALITIVIGVFGGIALTTLKQELIPSVSFPQLAVVTAYPGASPAVVDSDVSTPIERAIQAVPGLESSTATSRTDSSVISASFTYGTDLATAEQKIDQAINRIRTTLPDGIDPVVIAGSIDDLPVIQIAVTSDLSPQDLTAALERSTLGDIRKLEGVRDASLLGTVGQRVVITPDPAKVQGAGLTNQAIRDALDANGKLLPAGSVTEDGTTLSVQSGTRLGSTQDLASLPLLGAAGGRELTIGDVATVELGQDPTTGISRVDGQPSLTIAVTKTPAGNTVDVSHLVTELLPQLADDLGNGTEFTVVFDQAPFIEQSISSLTTEGLLGLVFAVLVILVFLMSIRSTIVTAISIPASVLITFIGMLASGYTLNIITLGALTIAVGRVVDDSIVVIENIKRHLSFTPDRLDAIRAAVREVAGAVTASTATTVAVFLPIALVGDITGELFRPFALTVTIALAASLFVSLTIVPVLAYWFLRPEGESRRARRKAAAAAGTVRTGAHAAVRGSADDRERSGRRAHGSHAAHGDGEGTDRPTRLQRGYLPILAWTLEHSAVTLVLAILVLGGTVALIPSMKTNFLGDSGQNTLTVSQELPSDTSLEAQDTAATKVEQALIGVEGVDTVQTSIGADSTSLTAAFSGGGGITFSLTTDSDADQDAIRERVRTAVDGLTDVGDVSLAAASGGFSSSDIEVQITANDSDDLKASADAILAAVKDIPSIEQATSNLSETQPYIAVTVDRAKAAAAGLSEQAVGGIVTASRLPAAVGQVVIDEKTLSIYIQDPDAAQSLQGLRDFRIPTARGLVPLSDLATVEVADGPATVTTTGGFRSATVSATPGSDDVGFASSEVSRAVADVQLPAGAQASLGGVASQQSDAFGQLGLAVLAAILIVYIIMVATFRSLVQPLVLLVSVPFAATGAVLLQVVTGVPLGVASIIGLLMLVGIVVTNAIVLIDLVNQYRTRGMELREAILQGAGRRLRPILMTALATIFALLPLAIGLTGHGGFISQPLAIVVIGGLLSSTVLTLLVLPSLYSLVERAGLRIRARGERRRAERGLPVAGSAEASGERAAG
>NZ_CP048047.1|WP_167436067.1|664605_665004_-|DUF2256-and-DUF3253-domain-containing-protein
MAHRASSTTDRVPEPKTCASCGRTIEWRKKWARDWDQVRYCSDACRRRGVSDVDAALERRILDLLAHRAGGATICPSEAARAESPDDWRELMEPARRAARRLVQAGEVEITQKGSVVDPSTARGPIRIRRRR
>NZ_CP048047.1|WP_053773783.1|663315_664353_-|UDP-glucose-4-epimerase-GalE
MKVLITGGAGYIGSTIASYGFDAGIEIVVLDDLSTGRPEFVHHGELHVGDIGDTRLVDAIVDRHPDIDAVIHCAARIVVPESMEKPLDYYDNNVAKTISLVRALTARGIHRFVFSSTASMYASSGGEFVDEDSPVAPQSPYSASKHMVERILQDACTAGLMSAVVLRYFNPIGADPDMRSGLQSTNPSHALGKMIEASNASGTFTVTGTTWPTRDGSGLRDYVHVWDLARAHILALQRFDDLVRSSTRAPYQVINLGTGTGTTVFELLSAFESVVDAKLAVTRAEARPGDVAGCAPLTSKAEELLGWSAERSLEQGVADSLAWAPKLAALLAASPSSDAHRGVDR
>NZ_CP048047.1|WP_167436066.1|662092_663319_-|hypothetical-protein
MTHVVLFRHTPRAVDLWNAIAEDVVILGHEQVRHRYTSDSRIDLSKVRFLESFDLPVLMGALRELQETHELRSVSTLGEEDMDTAGFLHEFFVTGPSDFAVGTMFKDKLFMRSALQGVVPQPRFRGLTDFTGTLADLAGEGFGILKPRRGAGGAGVRRLSAMEGSDSVRHTITDERMAEEAVVSDRMLTCDGMAVGGEILHFYVHEYDEMVLDSLHAGSGLTISTSRAYVDEPALIQTLFALVHAALKTLTGASDAVTPFHFEWFVDEAGLPVFCEVGRRFGGLSIPRLCRYAFDATLLEDYWRAMRGESLRIVPLSAETLPRPRRFASCYAKYRTAGRVVTAPTPSSFPQADTAFVYVVEGDITSDATAVHEDAVILELTADTHDTLRAKLDEARAVVARELRMAPA
>NZ_CP048047.1|WP_167436065.1|661433_662096_-|hypothetical-protein
MRCVRLPNRVETSDIHILCRFIGGVRPVSALLDVEVPEVIADQLRTESFILTLSNLRTEFDGETWTPYRELLVKIPVTMGGEDHTYPIRTFVDHELSVVRGYQLGFDKHFSSCIPAVQDARWTFSMESLDVDVSLWDAPEAQGEAPRMAVPPVVTVIQTPDGRRRPEIHRLNVEDVHDRPDLSVGVTAGSGTGILSGHPFELVAVASSASGFTLCGSIPL
>NZ_CP048047.1|WP_167436064.1|660177_661437_-|MFS-transporter
MTPQPAPIGFASARWLLAAVGTSKLGGLSFGVVATWAIGSALGSDAVGTTNACAGVATLLVGLFGTFWIDRVDRRKLLIAIDVTAAAACGVVSAWQFTHPGSVSLAQIATLMILLAALAALYSPSSRALTPLITDPRSLIRVNSAYAIVSEVARSAGPVVGAALLLGGDAGLPAATAVNGISFLVSAALTMAVSTRCAEAPTDRSEKRLELILGGVRFLKLDRALSREVWCATSLNFFLMAPTFVLLTRSTQTGWGAAAFGLGNVAEAAGALAGGIAAGVLASRINGFRAAHLAPVVATGLACLTIDSLAVTALVLFTLGGVVAAYNVVLFTKLQTSAPAALIGRVFAFVVTLAGASLPLGNMVFGQLSSAVSPPVLAMIAAIGFVAVSAVVLLASRRPPSLLPPADGADAPTDRADHA
>NZ_CP048047.1|WP_167436063.1|659627_660170_-|hypothetical-protein
MHVLGPAGTDSVAAARAWHSDAFGCDARIRLCDTYTELFDRLPELRADFVVMPAGYVDDESGLSWVDLHFASIDKVTLICTFMRPTKPMAVFENTAWLRSGMALQPATRALSKASGIDHADRPPVYFRSKPLAFEAMLHEGYRYAIGSVTERSETLVASGRIVVRKTFNPTMVWCVYVVC
>NZ_CP048047.1|WP_162232635.1|658510_659566_-|hypothetical-protein
MPPLAQDGWLLGSVLQSHDLTALSPGATFATPARTIWTRHLKVTPPNPYWEIKHDLVHMMTVTRGRDERLLLDFPSAFCQANGVAPADLFVVSADEAIARTFTAAEIDFRVPFHVDGRRLGEYHKFFLRRPQGVFPLFDVVTFDMHGDTFTELHLNIAHLEVAIGLVPTIHGSSGKRAVSDLLGISPDMGTLTSSMRTLRLLALSDALLAASDAGLRAGPSRGGHEVKKIAKMLALDAQVLSAPVDALLALIDADLARVVRDEQRRTSSLDVDAFLSMDHEVRASTHGITDEHLAIARGEARDERVLPPGRDARYFTDIPHFGAMPVDEWSRQLRCIGVRRGLVAGSETAR
>NZ_CP048047.1|WP_167436062.1|657596_658514_-|hypothetical-protein
MNGQEDRLKVLFVGRGVMTQGIIRNVAPVADVRVLSRHYPDPGNGGKAGVDDISAALEWEPSVIVSCAESEARASEIWFGDQMRGYLEDRPAHAVEMGTLGVRWFLDWHRAVGATRGRAVESPLTGSRSGAARGSLSAFRHSADDTSCLEPFYSAMAAVVYDFPTPGDPTRFKLLYNAWGAALLQTLTTFVPLFESALPESRDTAWRILRYDGWMSLVMDAKLDRALGHDFGDADFSVRNMVKDLGHALEMIGDGQGRAEIVRVKHAYDRAAREFGPGTDFSAVTRVRPPPPHPPTDGGSSPPAS
>NZ_CP048047.1|WP_053773774.1|656509_657664_+|pyridoxal-phosphate-dependent-aminotransferase
MTAAPEHELPGWSSSRARALHARRWAEVEGSDILPLTTAEFDVPTDPDIIAAVQRRLEDPLAYEPHYTSGAVGATLARFHREEHGIPVSSECFWLVAGVIAASRAVLVQVISPGDEVLFLRPSYRPIVDAIVGAGGVPVAADISSPRGIVASLREALSPRTRAVYLCHPHNPTGHSLSADDLGGIAELARESDLVILCNELHARLTFQGRHVPAAASAPERVITFGGATKSHNLAGLGGGFVYTQDADWAAALRQAAGSSVPAARGLQQLGLQVAYSSEPSGWLGRIRSSIVANRRRLSTALVGWDPTLDVYPSSATGFIWARSGRHADLARELERDTGIRTAPGRSFGVGDAHVRIAVPLPVTTLEETIRRLSGGEAAAGGRG
>NZ_CP048047.1|WP_167437340.1|671091_671619_+|GNAT-family-N-acetyltransferase
MRPLTPDDAPALSALRLRSRAFLAPWEPIRQPDHDTPAGQRADVEAALAQHARGQGVPFAILDDDGSVAGRISLDTIVRGAFESCAMGYWLAADRTGRGLATEAARAAVAHAFDDLGLHRVEAGTLLHNDASQRVLARCGFTRYGLAPRYLRIAGEWQDHVLFQRLADEPRVWPG
>NZ_CP048047.1|WP_167436069.1|671657_673016_-|DUF4041-domain-containing-protein
MTSGGMVFNPPPGWPKPPIGWTPPAGWTPDPSWPAAPPGWLLWLDADDGAAPGPSSSSEGDSVAPVTAKTLPANASEVQEARIHTLEQENARLRERLAAGDSDALVELDDARVLQAVGIYRFHHPLETAAAYKERLTDIETRIADVVRDDQAIEKSELFTFNNSLAQGRRMTSDLARLMLRAYNAEADNALRTLRAGNAVTATRRLEASRVAIAKLGKLMEMRISDAFHLLRVEEIELTADWLMKKQVEREEAREERARLREEQRVQKELDEERSRLDKERAHLLNALSALTSQGQTDDDLLHRLATIEEAIADNDFRAANIRAGYVYVISNEGAFGPGVVKIGLTRRLKPTERINELSGASVPFRFDVHTLFFSEDAVTLENELHRHFANRALNQTNSRKEFFFATPSEVREVLLSKVGNLLEFSDAAEAVEFRQSVASWPKPSHGRHAIS
>NZ_CP048047.1|WP_167436070.1|673012_674230_-|hypothetical-protein
MQHQARLAEQRQRAAIRQHEARERALEQARKASARAQAAAERASEADRRRLEREAAAAHVEFMQTRVGQMNEDLAARYEELDGLLTATLDRDDHVDLEELRVRPEHPPFPRPELRVAIPHPVPIPDPPFPVQHEPEPPTGLFGKKRKLEEAQAAVDAQYATDYYAWQAATEALPGRRAEQLAEHVAAEEARQSRLAEVEADHASVVAEVEAAAAEKNDELDALISGLAYGTVDAVEEYVGIVLANSVYPEWFEVSHSADFVPATAELNLRVTIPGPDRIPAVKGYRYVKASDEISPSPATQKDTKERYAKAVHDVALRSLHEVFEADRRGLIRGISLELGTETTNPATGRDFYVRFVAVATSRDQFEELDLASVVPSATLAYLNAVVSKNPVALLGVEADGVRRA
>NZ_CP048047.1|WP_167436071.1|674414_674906_+|GNAT-family-N-acetyltransferase
MQIRPATDADWPLIHPFYRAIVDAGRTYALPAGQSPEEARPNWMAEAPARTFVAVDDDGTVLGSAKAGPNRPGRGAHVATGSFLVDPAHGGRGVGRALGEFVLAWARAEGYRAIQFNAVVETNRAAVHLWESLGFRIIGTIPEAFDHAEDGLVGLHVMHLPLR
>NZ_CP048047.1|WP_167436072.1|675017_675977_+|5-dehydro-2-deoxygluconokinase
MSPAPTPILDVITIGRVGVDLYPLQDGVGLEDVATFGKYLGGSAANVAVAAARHGRSAALVSRVGDDPFGRYVTRELERLGVSAEFVTPIDDLPTPVTFCEIFPPDDFPLYFYRRPKAPDLCIEADALDTTAIEDARVHWSTVTGLSEEPSRSAHHAAWAARARRPLTVLDLDYRPMFWSSPADATREVGRALEHVTVAVGNREECEIAVGETDPLRAADALLDRGVELAIVKQGPKGVLAKTRDETVEVPPYAVEVVNGLGAGDGFGGALVHGLLAGWELERILRFANVAGAIVASRRECSTAMPTTAEVEAVLEGIR
>NZ_CP048047.1|WP_167436073.1|675973_676915_+|deoxyribose-phosphate-aldolase
MTAVDASRVPAEALRAGDLPGAFQALRDLRATDPAAVARALAGRVRRPLIRDDGRLLIVAADHPARGALGVGDDPMALADRYELLAGLATALTRDGVDGVLGTPDIVDDLALLGLLDDKVVVGSMNRGGLRGAAFEMDDRFTAYDVAGIVRDGLDFAKTLVRINLADAGTAATLEANARAVDDAVRAGLPIMLEPFMSAWQEGRIVNDLTPDAVITSIAVASGLGSSSARTWMKLPVVDDMARVMAGTTLPTLLLGGDPQGASEDTWAGWEHALDLPGVRGLVVGRTLIHPADGDVARAVDQAVDLVHGRARP
>NZ_CP048047.1|WP_167436074.1|676966_678472_+|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase
MTDTAPLPVVPHWIDGARSPSTSGRTAPVYDPARGVVTKEVALAGADEIERAIASAKAAFPAWRDLSLAKRQAILFRFRELLEAEKGELAEIITSEHGKVVSDALGEITRGQEVVEFATGLAHHLKGEYSEQVSTGVDVYSTKQPLGVVGIISPFNFPAMVPMWFFPIAIAAGNAVVLKPSEKDPSAAIWIAELWKRAGLPDGVFTVLNGDKEAVDGLLTHPDVRAISFVGSTPIAQYVYETGTKHGKRVQALGGAKNHMLVLPDADLDLVADSAVNAGFGSAGERCMAISVVVAVEPVADALIERITARMASLRVGDGRRGCDMGPLVTEAHRDKVASYIAIAEEDGARVVVDGRGIEVDGERDGFWLGPTLLDELPTSSRAYTEEIFGPVLGVVRVRTYEEGVALINAGAFGNGTAIFTNDGGAARRFQNEVQVGMIGINVPIPVPVATFSFGGWRSSLFGDTKAHGAEGVRFFTQQKAITSRWLDPSHGGVDLGFPQN
>NZ_CP048047.1|WP_167436075.1|678517_679471_+|5-deoxy-glucuronate-isomerase
MTTNEWLHPRGSLGRDGWETVVDGSLPGWEHTGLRVAVLGDGDALDLPAAGVERMVVPLAGSFAVRHRGGDGDERVTDLHGRASVFAGPTDVLYLSCASSAVLTGSGRVAVAESPATRQVPSRRIAREDVSVELRGAGRSSRQVHNFATPGAPGSLDAERLIVCEVLTPAENWSSYPAHKHDEERPGEESELEEVYYFETAVGRGLEAPGDADPFGLFHTSSSPAGEIAIDAVVRTGDVALVPYGYHGPAVAAPGYDLYYLNVMAGPGADRAWLISDHPAHGWIRGTWAGQAIDPRLPFTADATPAAPASDQESPTR
>NZ_CP048047.1|WP_167436076.1|679467_681384_+|3D-(3,5/4)-trihydroxycyclohexane-1,2-dione-acylhydrolase-(decyclizing)
MTEPTTRMTVSQALVAFLANQWTVDGDHRERTIPGVFGIFGHGNVAGIGQALMQANAEDPDLMPYHQARNEQAMVHQSVGFARMHRRLATYASAASVGPGAANMLTGAALATANRLPALLLPSDTFATRVADPVLQQLEHPHDLGISVNDAFRPLSRFFDRVQRPEQLYSIALAAMRVLTDPAETGAVTIALPEDVQAEALDVPLAFLAPREWHLRRPLPERGPLGRAVQAIRDARTPLIVAGGGVIYSAAEEALLCFAEATGIPVGTTQAGGGSLAWDHPQYLGGIGATGSTAANRLAAEADVVIGIGTRYSDFTTASRTAFQRPDVTFVNVNVAAFDAYKHGTQLPVVADARETLEALIEALAGTHVDAAYADRIAREKREWDAAVDRALAPTGGALPGQPEIIGAVQAASDPRDVVVQAAGSLPGDLHKLWRVRDPLGYHVEYAFSCMGYEIPGGLGVKRGAEALGDDRDVIVMVGDGSYLMLHTELVTAVAEGIKVIVVVIQNHGYASIGHLSETVGTERFGTRYRQLDPATRSFEGREPLPVDLAANARSYGVDVIEVAPGPDATTALGEAVRRAKASDRTTVIHVESDPLVYGPDGEGWWDVPVPGVSEMPSTQAAHAEYVERKRAQRPLLG
>NZ_CP048047.1|WP_167436077.1|681470_681800_-|hypothetical-protein
MFQTHWIPVAHGGQNIRSFRVQGYSVRPGGLAYNDVDECVSYSGYDDRIDDVRYAGVVLPQIYDTTVTSFSGPHCTGYDYGRVGGRGPIDRATLDWTLFTHHAPAPRRF

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP048047_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048047_2

2523922-2524149

Orphan

Consensus_repeat	Method
CGCCACGGTCAACCAGTGCAACGGCTCCGGCAACGGCGGCGGCGC	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP048047_2

>merge|NZ_CP048047|2|2523922-2524149|PILER-CR
CGCCACGGTGAACCAGTGCATCGGCTCCGCGACCGACGGCGCGGCAGGCGGCACGGCCTGCTCGCCCGTCTCCAACACGACGGGCGCCGACGTCACCCAGTGCAACGGCTCCGGCAACGGCGGCGGCGCCGCGGGTCGCGTGACCTGCACGGTCCCGACGTCCACCGTCACCTCCGCGCTCCTCGTCACGGTCAACCAGTGCAACGGCTCCGGCAACGGCGGCGGCGC

>NZ_CP048047|2|1|2523922-2524149|PILER-CR
CGCCACGGTGAACCAGTGCATCGGCTCCGCGACCGACGGCGCGGC	AGGCGGCACGGCCTGCTCGCCCGTCTCCAACACGACGGGCGCCGACGTCACCCAGTGCAACG
GCTCCGGCAACGGCGGCGGCGCCGCGGGTCGCGTGACCTGCACGG	TCCCGACGTCCACCGTCACCTCCGCGCTCCTCGTCACGGTCAACCAGTGCAACG
GCTCCGGCAACGGCGGCGGCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048047.1\|WP_167437008.1\|2513141_2513624_+\|large-conductance-mechanosensitive-channel-protein-MscL	unknown	unknown	gnl\|CDD\|376605
NZ_CP048047.1\|WP_012039156.1\|2530089_2530788_-\|metal-dependent-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224240
NZ_CP048047.1\|WP_167437421.1\|2519363_2519963_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235185
NZ_CP048047.1\|WP_053775144.1\|2513664_2513913_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048047.1\|WP_167437016.1\|2533513_2535400_+\|helicase-associated-domain-containing-protein	unknown	unknown	gnl\|CDD\|379300
NZ_CP048047.1\|WP_043673582.1\|2522887_2523238_+\|Lsr2-family-protein	unknown	unknown	gnl\|CDD\|378714
NZ_CP048047.1\|WP_167437010.1\|2519983_2520757_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048047.1\|WP_167437012.1\|2525859_2527932_-\|S9-family-peptidase	unknown	unknown	gnl\|CDD\|224422
NZ_CP048047.1\|WP_167437007.1\|2512705_2513113_+\|FmdB-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225210
NZ_CP048047.1\|WP_053775155.1\|2527989_2528487_-\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|224321
NZ_CP048047.1\|WP_086526616.1\|2521742_2522525_+\|translation-factor-(SUA5)	unknown	unknown	gnl\|CDD\|272879
NZ_CP048047.1\|WP_167437014.1\|2530898_2532017_+\|phosphoserine-transaminase	unknown	unknown	gnl\|CDD\|235103
NZ_CP048047.1\|WP_167437011.1\|2525042_2525813_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|198111
NZ_CP048047.1\|WP_167437015.1\|2532087_2532699_-\|DUF3027-domain-containing-protein	unknown	unknown	gnl\|CDD\|378605
NZ_CP048047.1\|WP_053775159.1\|2533233_2533503_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048047.1\|WP_167437006.1\|2511186_2512083_-\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	unknown	unknown	gnl\|CDD\|133021
NZ_CP048047.1\|WP_043673558.1\|2532691_2533075_-\|cold-shock-domain-containing-protein	unknown	unknown	gnl\|CDD\|239905
NZ_CP048047.1\|WP_167437009.1\|2513912_2517638_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|224037
NZ_CP048047.1\|WP_053775141.1\|2512123_2512699_+\|5-formyltetrahydrofolate-cyclo-ligase	unknown	unknown	gnl\|CDD\|274270
NZ_CP048047.1\|WP_167437013.1\|2528847_2529789_-\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|366353

Protein	Function_ID	Function_description	E-value
NZ_CP048047.1\|WP_167437008.1\|2513141_2513624_+\|large-conductance-mechanosensitive-channel-protein-MscL	gnl\|CDD\|376605	pfam01741, MscL, Large-conductance mechanosensitive channel, MscL.	8.94468e-45
NZ_CP048047.1\|WP_012039156.1\|2530089_2530788_-\|metal-dependent-transcriptional-regulator	gnl\|CDD\|224240	COG1321, TroR, Mn-dependent transcriptional regulator [Transcription].	5.49676e-44
NZ_CP048047.1\|WP_167437421.1\|2519363_2519963_-\|hypothetical-protein	gnl\|CDD\|235185	PRK03980, PRK03980, flap endonuclease-1; Provisional.	0.00353361
NZ_CP048047.1\|WP_167437014.1\|2530898_2532017_+\|phosphoserine-transaminase	gnl\|CDD\|235103	PRK03080, PRK03080, phosphoserine transaminase.	0
NZ_CP048047.1\|WP_167437016.1\|2533513_2535400_+\|helicase-associated-domain-containing-protein	gnl\|CDD\|379300	pfam13625, Helicase_C_3, Helicase conserved C-terminal domain. This domain family is found in a wide variety of helicases and helicase-related proteins.	1.49099e-22
NZ_CP048047.1\|WP_043673582.1\|2522887_2523238_+\|Lsr2-family-protein	gnl\|CDD\|378714	pfam11774, Lsr2, Lsr2. Lsr2 is a small, basic DNA-bridging protein present in Mycobacterium and related actinomycetes. It is a functional homolog of the H-NS-like proteins. H-NS proteins play a role in nucleoid organisation and also function as a pleiotropic regulator of gene expression.	1.74764e-46
NZ_CP048047.1\|WP_167437012.1\|2525859_2527932_-\|S9-family-peptidase	gnl\|CDD\|224422	COG1505, COG1505, Serine proteases of the peptidase family S9A [Amino acid transport and metabolism].	0
NZ_CP048047.1\|WP_167437007.1\|2512705_2513113_+\|FmdB-family-transcriptional-regulator	gnl\|CDD\|225210	COG2331, COG2331, Uncharacterized protein conserved in bacteria [Function unknown].	2.63644e-24
NZ_CP048047.1\|WP_053775155.1\|2527989_2528487_-\|HNH-endonuclease	gnl\|CDD\|224321	COG1403, McrA, Restriction endonuclease [Defense mechanisms].	7.27652e-23
NZ_CP048047.1\|WP_086526616.1\|2521742_2522525_+\|translation-factor-(SUA5)	gnl\|CDD\|272879	TIGR00057, Putative_threonylcarbamoyl-AMP_synthase, tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family. Has paralogs, but YrdC called a tRNA modification protein. Ref 2 authors say probably heteromultimeric complex. Paralogs may mean its does the final binding to the tRNA. [Protein synthesis, tRNA and rRNA base modification].	1.35351e-10
NZ_CP048047.1\|WP_167437011.1\|2525042_2525813_+\|transcriptional-regulator	gnl\|CDD\|198111	smart01043, BTAD, Bacterial transcriptional activator domain. Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.	5.24298e-19
NZ_CP048047.1\|WP_167437015.1\|2532087_2532699_-\|DUF3027-domain-containing-protein	gnl\|CDD\|378605	pfam11228, DUF3027, Protein of unknown function (DUF3027). This family of proteins with unknown function appears to be restricted to Actinobacteria.	4.56331e-22
NZ_CP048047.1\|WP_167437006.1\|2511186_2512083_-\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	gnl\|CDD\|133021	cd02541, UGPase_prokaryotic, Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.	2.59433e-148
NZ_CP048047.1\|WP_043673558.1\|2532691_2533075_-\|cold-shock-domain-containing-protein	gnl\|CDD\|239905	cd04458, CSP_CDS, Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription.	3.99644e-18
NZ_CP048047.1\|WP_167437009.1\|2513912_2517638_-\|AAA-family-ATPase	gnl\|CDD\|224037	COG1112, COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair].	5.47894e-15
NZ_CP048047.1\|WP_053775141.1\|2512123_2512699_+\|5-formyltetrahydrofolate-cyclo-ligase	gnl\|CDD\|274270	TIGR02727, Uncharacterized_protein_YqgN, 5,10-methenyltetrahydrofolate synthetase. This enzyme, 5,10-methenyltetrahydrofolate synthetase, is also called 5-formyltetrahydrofolate cycloligase. Function of bacterial proteins in this family was inferred originally from the known activity of eukaryotic homologs. Recently, activity was shown explicitly for the member from Mycoplasma pneumonia. Members of this family from alpha- and gamma-proteobacteria, designated ygfA, are often found in an operon with 6S structural RNA, and show a similar pattern of high expression during stationary phase. The function may be to deplete folate to slow 1-carbon biosynthetic metabolism. [Central intermediary metabolism, One-carbon metabolism].	8.47655e-59
NZ_CP048047.1\|WP_167437013.1\|2528847_2529789_-\|C40-family-peptidase	gnl\|CDD\|366353	pfam00877, NLPC_P60, NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins.	1.33297e-27

>NZ_CP048047.1|WP_043673582.1|2522887_2523238_+|Lsr2-family-protein
MARKVVTTLVDDIDGVVIEEGKGETVPFALDGVNYEIDLSDANAAKLREALDTYVDRARRVGRASTGRSSGTRRSSSSAPKEDLGAAREWLREHGHKVSERGRISADLLEEYRANK
>NZ_CP048047.1|WP_086526616.1|2521742_2522525_+|translation-factor-(SUA5)
MTDTTRTIPWDGTLDPRAAAAIEAPGGLVVAATKVGYILMTTDGAGLERKFDAKQRNRDKPGVVLCTSIEQLTQLAVLNDEILAFYQEHWDADVLLGCILPWREDAKHLLPDETAAQLAMDRRGTSCFVIRFGRPAEQLAEHLWANGRLAFASSANPSGQGNRGRVEGIGERIEQQADVIVAADDYVASIQPGLDETSRHEQGVMVSMVDASGALVPEQRGERSVTPSPTLIRRGLAVDSIMSALARSFPSWDYRHGQYY
>NZ_CP048047.1|WP_167437010.1|2519983_2520757_-|hypothetical-protein
MHAFCVADVRQVACQQQGIGVDRRERVQLVDSGSQVKASVVSGAVVTAIGVLVSAALVAASALHPVAVEHASVGQPANTALLHSGASTFDSSRVVGGTSDDQLGQMLALLESLPEDLKQADPKTTPGYADRLAAEINARRGGAVGGATTTAGHPAVSTALFTGTSASPRTSPTDPQIELAANWVACATDIVGLIVQYGIPVGKVIGWIKNARAIYGSVRAIAAAIRRGDFGVTVGEDAAHVLEGLLGIDGVIADCFS
>NZ_CP048047.1|WP_167437421.1|2519363_2519963_-|hypothetical-protein
MKEPPRNAETWEPPGFGAALSGHLAFGALKAPCVLLSLWLLTFFPFVPDLSFGDLIASVAAATVAAAVVEVLVEDRFSRARRLSSPGGWDFAVLPALTALPVVFLLGWLVGGVPAAGAVLGTAWALIEAVEIAWLRPWEPGMTQDEFDGKYAELKEMTRETFAPDVEEIRRRAGERSMQKYRDAIERKRREAGGDADPR
>NZ_CP048047.1|WP_167437009.1|2513912_2517638_-|AAA-family-ATPase
MNASHNSTSPHDLRVGDVQLGSGNVAEPRWREWREQLAGIGGTSPLLHFVDAPGSRIELSTTHPGGLAQFITGKTTLLSSLIRDELALRSARKAANRITQKGIELVSARGIESIHLAIGLAEWRFADEQFRAPVLLRPLAIRRHGSDYEVRLKGQPFLNPALARALEEQFQITLDAESFVALAVQNGAFKPQPVIDRLRGLTSHLPAFAVQPRLVVSSFAEVGRALAEDAEHLEHLVIDAIAGNPTAKWGVGEAYAPVDPIPQDQRPPVTDTLLLDADAEQEYVIAQINAGNSLVVTTLPGTGGTQTIVNSIGCLVAQNKRVLVVSPRASSLKGIGQRLADVGLPGLAVAPKSLKRDVVQSIVRNEKATPAQTAEVDDALVRLRHVLLDYRFALGRPDRDLGVSVLDALGELSRLALLPDPPATTARLTRDAVKAIAHDRASAAASLVKAASLGEFRYGPGDSPWYGATFSTSAAATHAHDLAKSLSADGLPRLLERADELIGQTRMRAYRSIDELGVYLRLLLDVRETLDKFQPVVFDRSLSEIIAATGSRRDAPEMTSITRRRLRKLAREYVRPGVHISDMHESLKAIQKQRILWQRYVAVGSTPEVPRGISDVHVRYQEVAADLKVLDEPLSMLTRPTPLAELPVDELREKVAQLAEDSEVLQNLQERTSLLAELRRLDLDPLLRDLSDRHVPQESVAAELELAWWQSVLEQMLAGDKALLNANTSVLDRLESDFRLVDEAHATASAGLLAWQLAETWKIGVVDWPEEAHHLRQLLGGSAPIDAGALHHSAPHLSRTIAPVWLASPYEVPAITDEMPFDAVFLVDAGAMTLAEALGGIRRGKQTVVFGDPVTQTPSPFTIAVVPQSERSTPQLADDDSTLEERHADSALARLGELLPTLSLTRSYRAGGEDLAELVNRRFYGGRIQSLPWAGTFLGHGSLSLDFVADGHGMPDEDTGAVESVDAEVIRVVELVLDHASHRPRESLMVITASARHAVRVQQAVLHAAAKRSDVTEFFIGDRAEPFMVATLEQCVAQSRDRVIFSVGYGRTPHGRVLSNFGALAAPGGERLLAVAMTRARRSMVVVSCFQPSDIDQDRMKHGIVALAQILSEAEARFKEDPIPDDGDAMLVDLARRLEGLGLAPALGHRDKLGLVASYGGRAIAIETDPVVNQTSLRESLRLRPEMLKRLGWHYLRVHSFELFADPDAVARRIATALGAISDAHPVTAPVQVQAGAHRAD
>NZ_CP048047.1|WP_053775144.1|2513664_2513913_-|hypothetical-protein
MPERDATDADSAADAAGEGRPARRSRRASTAPVPGSDPTPQAAARAPAVRAAEDAPQGWGDAPAASDANDDRLRLDRPPHWG
>NZ_CP048047.1|WP_167437008.1|2513141_2513624_+|large-conductance-mechanosensitive-channel-protein-MscL
MKGFKEFILRGNVIDLAVAVVIGAAFTAIVTAIVTNLINPVIAAIVNSSSLETALRVDLPTASGEPSPIFFGAIIAAVINFLIVAAVVYFGLVLPVNHLKKVAFAKQKAEEDATPKDVPPTEAELLIEIRDLLAGRPSPEGAHTIPSSSGQHVAEPGKPA
>NZ_CP048047.1|WP_167437007.1|2512705_2513113_+|FmdB-family-transcriptional-regulator
MPTYSYRCTVCGNAFDIVQAFTDDSLTECPVCGGKLRKLFAAVGVSFTGSGFYRNDSRTEDAAKRSRSSSSGSSSAKSGDSSSSSSSDSSSSSSGSSESSGSSGSGTVGQGSGTVTPSTPSGPASSGSGSSSPST
>NZ_CP048047.1|WP_053775141.1|2512123_2512699_+|5-formyltetrahydrofolate-cyclo-ligase
MPSDVPTEKRALRAQLRERRRQMTSTERDESAHGLTSRLTELVANHDARRVACYLSTVDEPTTRPFLQWLHADGRQVLLPVSRNDGLLDWVVSDGTETEGLFGLPEPVGELLGPIAINDVDLILVPAAAVDQGGMRMGWGRGYFDKTLGSMEACPPVYAVVFDAEFVDELPREKHDMPVDGIVTPTLIHSF
>NZ_CP048047.1|WP_167437006.1|2511186_2512083_-|UTP--glucose-1-phosphate-uridylyltransferase-GalU
MVTHITKAVIPAAGLGTRFLPATKAMPKEMLPVVDRPAIQYVVEEAVGAGLHDVLMITGRNKTALENHFDRNAELEATLQLKGDDAKLRKVNESTDLADMHYVRQGDPKGLGHAVLRAEMHVGREPFAVLLGDDIIDKRDVLLSRMIEVQLQRGCSVVALLEVDPSQTHLYGVATVEETDDEDVVRITGMVEKPAAGTAPSNLAIIGRYVLRPEVFDVLHKTEPGKGGEIQLTDALEKMAAAPEWTGGVYGVVFRGRRYDTGDRLDYLKAIVQLGVDHEDLGEGLREWLPEFVKTLER
>NZ_CP048047.1|WP_167437011.1|2525042_2525813_+|transcriptional-regulator
MIQVDVLGGFRIAGLGTDPASASPGRDPGGAALSDGTRRLIAALAIRTRPADRGTLASQLWPDALDGRAQSSLRSAIARLGDGGREIVDSASSGLMLHEAVTVDLRTARATAARLLDQRRSEPDDADIAPDAVELFSQHLLPDWFDAWLEPAAEEWRHLRVNALEAQSEALLRRGRLHEAASAARRAIDVDPLRETAQRRLIAVHVAAGNQSDALRAYATYRTRLDREVGLEPTALLTDLVSGLRPRPGPTGRARS
>NZ_CP048047.1|WP_167437012.1|2525859_2527932_-|S9-family-peptidase
MTDDARDTSTPDDPFLWLEEIHGDRALAWVRSQNERTLGRSPEGSRAGLTHELLEVLESDERIPYVTRHGEHLYNLWRDAEHVQGLWRRTTLDEYEAPAPEWEVLLDLDALGAAEGIPWQFSRAQLLSPERDRALVSLSPDGGDAVAVRELDLGTGRFVEGGFEVPVAKTMVSWIDRDTVFVGTDFGPGSLTESSYARTARRWSRGQALADAPEVHAVAATDMLVHVTHDPTPGFERDVVREVPDFFTSRTLLLTDAGTVPIEVPEDVDVDLQREWLVLRPRTDTEIGGVVHAGGSLLAARLDDFLAGSRELAVLFAPTSSRSLEDWTWTAGHLVLTLLEDVASRIRVLTPPTAAGPAGWHEEDVRVGTPLASVTVVATDRETDEYWLAVTGFLTPPTLLHGTVGEGAPRPVKEQPASFDARGLEVQQHFAVSDDGTRVPYFQVGPRDLPLDGSAPTLLSGYGGFENSLLPSYSGVRGRGWLARGGVYVLANIRGGGEYGPAWHRAALRQDRHRAYEDFAAVARDLVTRGVTVPARLGCEGRSNGGLLVGNMLTTYPELFGAVVCGVPLLDMRRYTRLSAGASWIAEYGDPDVPSDWDFIRTFSPYHNVRAGVAYPPTLVYAATSDDRVGPVQARKMVALLHETGVEDAWYFENTAGGHGGSADNPATARLQSLIHAFLWERLAGVRMDA
>NZ_CP048047.1|WP_053775155.1|2527989_2528487_-|HNH-endonuclease
MRTLVLNAGFEPLAVVSFKRALVLVLSGKATMLAQDEEHPILGSGGAWGRPSVILLTRYVRIPHARRVPVSRRGVLRRDGGRCAYCARNATTIDHVLPRSRGGKDTWENLVACCLSCNNRKSDRTPEEMGWTLRTSPRAPQGSGWVVSGMERPAPGWDEFLAPAA
>NZ_CP048047.1|WP_167437013.1|2528847_2529789_-|C40-family-peptidase
MSGVETQEVDNLAHGDISGSVGNPSDPTRPPAPGMDRLPTRRELRAAESAAAFRPRRDSAARTLQAPAPRLTPAPVGRSRRTKAANAVVMTFVTGLVGVMAIPAYAAGSQLEHTTSAEGVSLQDYSAANAQVVTADNASSAPVEEEGFTATSVAELSAQKAAAARAALAEQRRTQLASSATSYTGESADQLAQNPIYQGTSASGVSAVARQYLGVPYVFGGETPAGFDCSGLVKYVFAQFGLNLPHSVRAQHNAGTVVSREDARPGDIVVWNDFSHDGIYTGNGIFIDAPKPGDHVKERPIWSTNVHFVRLLG
>NZ_CP048047.1|WP_012039156.1|2530089_2530788_-|metal-dependent-transcriptional-regulator
MTDLVDTTEMYLRTILDLEEEAIVPLRARISERLGHSGPTVSQTVARMERDGLVIVSGDRHLELTPEGRSKAVHVMRKHRLAERLLSDVIGLEWEFVHDEACRWEHVMSEQVERKILDLLGHPTESPYGNPIPGLDELGDSPAVAFMAGVVSIVEASLGTTEDAPARGVIRRLGEPVQFDPELLSQLKQAGVLPGATGSFSREGAYVLVRVDGAGPGLELPLEVAGHIFIER
>NZ_CP048047.1|WP_167437014.1|2530898_2532017_+|phosphoserine-transaminase
MPTTKIPTELLPLDGRFGCGPSKVRQAQLDHLALAGAQILGTSHRQAPVKEMVGRVRAGLSRLFRLPDGYEVVLGNGGSTAFWDAAAFSLIERRSQNLVFGEFGGKFAKAAAAPFLEAPDVIRAEPGSRATASPVEGVDVYAWPHNETSTGVMAPVTRVHGDAGALTVVDATSAAGGIDFEATEADVYYFAPQKNLASDGGVWLALFSPAALERVDRIAASGRWIPEFLSLKNAVDNSRLDQTLNTPALATLLMLEDQLDWIERAGGLAWADARTRESSSVLYEWAERVGYARPFVTDPAHRSQVVVTMDFDESIDAAAVARTLRANGVVDTEPYRKLGRNQLRVATFTAIEPDDVRALVRCIEFVVEQGAG
>NZ_CP048047.1|WP_167437015.1|2532087_2532699_-|DUF3027-domain-containing-protein
MPEHDDDMTTTDGSGAEPTTVDDATAPDATAEVEPAEPAVPDAELLAAVDLARAALLEITPADTVGEPAGSIVEGDRLLSLLFANTMAGYPGWFWTVTLARVDDAAPTVLEAELMPGEGALLSPEWLPWSDRLAGIEADQEAERIAAESDHDDDDDDEDDPAEDADDVLDGVDFEAAPSEDDDDDDDDDDDDDDDTSFDGADR
>NZ_CP048047.1|WP_043673558.1|2532691_2533075_-|cold-shock-domain-containing-protein
MPTGKVKFYDEDKGFGFISSDDGQEVFLHASALPSGVAGVKAGTRLEFGIADGKRGAQALSARILDAPPSLVRMSRKPADDMAVIVEDLVKVLDGIGANLKRGRYPDDAHSRKIAALLRRVAEELDA
>NZ_CP048047.1|WP_053775159.1|2533233_2533503_+|hypothetical-protein
MASETAPSEGRAERILAYMLAGILLVAVLSILAILLAPLVAVDASQYSTPLWQVILLLPAVGIPIAALLFIAILVISVRRRRRMDGTSR
>NZ_CP048047.1|WP_167437016.1|2533513_2535400_+|helicase-associated-domain-containing-protein
MTDAIVLASRLRALDDGSLAALVRDRGVDAARVADLFDLADAVLAADAVARALEQLDRTALAVLAVAAAEGATVGRIPLEAVRDAVARRSGEDPRDPDELADAAARAAATLLADLDAGGITTHPEVATALATWPADGRPGTDELARLDPPAPLAAVPRVDPDEVDGRAGESAFRSVVAVAALLDELAREPARELSRGGMSLPDARRLAGALGADLDDVPVVLAIAARAGLVAQAGRTWSVAAGAAAWSARPTAERWEALAASWLDALAPATRGILAERADASWGAGLLEGVLWRFPGGSTWIGERVTLFTRDAGLLGITTGDVPSSAGRALLTVGADAAAAALAPHLPAEVDRVYLQHDLSVVSPGPLDPAVESRLLAVADPEGRGLAASYRISAASVSRALAAGHTVDGIRSFLAGISLTGVPQPLDYLLTETGTRFGRLRIRPAVPARSMPDARTAVVSEDAPLLATLLVDRDLAPLRLVRAGDGVLVSPASPDAVERALAAARLGPVREDAEGRRVAPAPRTHSAPDPARDPEPDAAEALVARVRAADGPDDGAAWTARQLEVAIRAKAALRVRVRMPDGREVDHVLEPASVSGGRLRARDRVADVERTLPLSSIVSLSPGPTAG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP048047_1	1.1\|669101\|29\|NZ_CP048047\|CRT	669101-669129	29	NC_004808	Streptomyces rochei plasmid pSLA2-L DNA, complete sequence	153090-153118	4	0.862
NZ_CP048047_1	1.3\|669188\|32\|NZ_CP048047\|CRT	669188-669219	32	NZ_LR134456	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 14, complete sequence	39520-39551	5	0.844
NZ_CP048047_1	1.1\|669101\|29\|NZ_CP048047\|CRT	669101-669129	29	NZ_LR594668	Variovorax sp. SRS16 plasmid 3	252976-253004	6	0.793
NZ_CP048047_1	1.1\|669101\|29\|NZ_CP048047\|CRT	669101-669129	29	CP023013	Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence	234900-234928	6	0.793
NZ_CP048047_1	1.1\|669101\|29\|NZ_CP048047\|CRT	669101-669129	29	NC_014310	Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence	236133-236161	6	0.793
NZ_CP048047_1	1.1\|669101\|29\|NZ_CP048047\|CRT	669101-669129	29	NZ_CP022783	Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence	235994-236022	6	0.793
NZ_CP048047_1	1.1\|669101\|29\|NZ_CP048047\|CRT	669101-669129	29	NZ_CP022795	Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence	235127-235155	6	0.793
NZ_CP048047_1	1.1\|669101\|29\|NZ_CP048047\|CRT	669101-669129	29	CP023015	Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence	236247-236275	6	0.793
NZ_CP048047_1	1.1\|669101\|29\|NZ_CP048047\|CRT	669101-669129	29	NZ_CP052095	Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence	237512-237540	6	0.793
NZ_CP048047_1	1.1\|669101\|29\|NZ_CP048047\|CRT	669101-669129	29	NZ_CP052077	Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence	230908-230936	6	0.793
NZ_CP048047_1	1.1\|669101\|29\|NZ_CP048047\|CRT	669101-669129	29	NZ_CP052097	Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence	237512-237540	6	0.793
NZ_CP048047_1	1.1\|669101\|29\|NZ_CP048047\|CRT	669101-669129	29	NZ_CP052079	Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence	230909-230937	6	0.793
NZ_CP048047_1	1.1\|669101\|29\|NZ_CP048047\|CRT	669101-669129	29	NZ_CP052093	Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence	237512-237540	6	0.793
NZ_CP048047_1	1.1\|669101\|29\|NZ_CP048047\|CRT	669101-669129	29	NZ_CP052101	Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence	237512-237540	6	0.793
NZ_CP048047_1	1.1\|669101\|29\|NZ_CP048047\|CRT	669101-669129	29	NZ_CP052099	Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence	237512-237540	6	0.793
NZ_CP048047_1	1.1\|669101\|29\|NZ_CP048047\|CRT	669101-669129	29	NZ_CP052125	Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence	230909-230937	6	0.793
NZ_CP048047_1	1.1\|669101\|29\|NZ_CP048047\|CRT	669101-669129	29	NZ_CP052129	Ralstonia solanacearum strain FJAT1303.F1 plasmid Plas1, complete sequence	236023-236051	6	0.793
NZ_CP048047_1	1.1\|669101\|29\|NZ_CP048047\|CRT	669101-669129	29	NZ_CP052123	Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence	230909-230937	6	0.793
NZ_CP048047_1	1.1\|669101\|29\|NZ_CP048047\|CRT	669101-669129	29	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	2427483-2427511	6	0.793
NZ_CP048047_1	1.1\|669101\|29\|NZ_CP048047\|CRT	669101-669129	29	NZ_CP052081	Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence	230909-230937	6	0.793
NZ_CP048047_1	1.1\|669101\|29\|NZ_CP048047\|CRT	669101-669129	29	NZ_CP052083	Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence	230909-230937	6	0.793
NZ_CP048047_1	1.1\|669101\|29\|NZ_CP048047\|CRT	669101-669129	29	NZ_CP052091	Ralstonia solanacearum strain FJAT15340.F6 plasmid Plas1, complete sequence	237512-237540	6	0.793
NZ_CP048047_1	1.1\|669101\|29\|NZ_CP048047\|CRT	669101-669129	29	NC_042350	Salinibacter virus M8CR30-2, complete genome	22585-22613	7	0.759
NZ_CP048047_1	1.1\|669101\|29\|NZ_CP048047\|CRT	669101-669129	29	MF580958	Salinibacter virus M8CR30-4, partial genome	22920-22948	7	0.759
NZ_CP048047_1	1.3\|669188\|32\|NZ_CP048047\|CRT	669188-669219	32	NZ_LR134466	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 24, complete sequence	52523-52554	7	0.781
NZ_CP048047_1	1.1\|669101\|29\|NZ_CP048047\|CRT	669101-669129	29	NC_019790	Deinococcus peraridilitoris DSM 19664 plasmid pDEIPE02, complete sequence	68029-68057	8	0.724
NZ_CP048047_1	1.3\|669188\|32\|NZ_CP048047\|CRT	669188-669219	32	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	153670-153701	8	0.75
NZ_CP048047_1	1.3\|669188\|32\|NZ_CP048047\|CRT	669188-669219	32	NC_010311	Streptomyces sp. HK1 plasmid pSHK1, complete sequence	167912-167943	9	0.719
NZ_CP048047_1	1.3\|669188\|32\|NZ_CP048047\|CRT	669188-669219	32	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	626983-627014	9	0.719
NZ_CP048047_1	1.3\|669188\|32\|NZ_CP048047\|CRT	669188-669219	32	NZ_CP029339	Streptomyces sp. SM17 plasmid pSM17A, complete sequence	14509-14540	9	0.719
NZ_CP048047_1	1.3\|669188\|32\|NZ_CP048047\|CRT	669188-669219	32	NC_010580	Beijerinckia indica subsp. indica ATCC 9039 plasmid pBIND01, complete sequence	88251-88282	10	0.688

1. spacer 1.1|669101|29|NZ_CP048047|CRT matches to NC_004808 (Streptomyces rochei plasmid pSLA2-L DNA, complete sequence) position: , mismatch: 4, identity: 0.862

gcggcgcgtacgaccgcggccagcgcggc	CRISPR spacer
gccctgcgtacgaccgcggccaacgcggc	Protospacer
**  .*****************.******

2. spacer 1.3|669188|32|NZ_CP048047|CRT matches to NZ_LR134456 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 14, complete sequence) position: , mismatch: 5, identity: 0.844

acgaccgtccggcccgtggtggcgagcggtcc	CRISPR spacer
acgaccgtcaggcccgcggtggcgagcgcccg	Protospacer
********* ******.*********** .*

3. spacer 1.1|669101|29|NZ_CP048047|CRT matches to NZ_LR594668 (Variovorax sp. SRS16 plasmid 3) position: , mismatch: 6, identity: 0.793

gcggcgcgtacgaccgcggccagcgcggc	CRISPR spacer
aaggcgcgttcggccgcggccagcgcgcg	Protospacer
. ******* **.**************

4. spacer 1.1|669101|29|NZ_CP048047|CRT matches to CP023013 (Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.793

gcggcgcgtacgaccgcggccagcgcggc	CRISPR spacer
ccttcgcgtacggcctcggccagcgcgcc	Protospacer
 *  ********.** *********** *

5. spacer 1.1|669101|29|NZ_CP048047|CRT matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 6, identity: 0.793

gcggcgcgtacgaccgcggccagcgcggc	CRISPR spacer
ccttcgcgtacggcctcggccagcgcgcc	Protospacer
 *  ********.** *********** *

6. spacer 1.1|669101|29|NZ_CP048047|CRT matches to NZ_CP022783 (Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.793

gcggcgcgtacgaccgcggccagcgcggc	CRISPR spacer
ccttcgcgtacggcctcggccagcgcgcc	Protospacer
 *  ********.** *********** *

7. spacer 1.1|669101|29|NZ_CP048047|CRT matches to NZ_CP022795 (Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.793

gcggcgcgtacgaccgcggccagcgcggc	CRISPR spacer
ccttcgcgtacggcctcggccagcgcgcc	Protospacer
 *  ********.** *********** *

8. spacer 1.1|669101|29|NZ_CP048047|CRT matches to CP023015 (Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.793

gcggcgcgtacgaccgcggccagcgcggc	CRISPR spacer
ccttcgcgtacggcctcggccagcgcgcc	Protospacer
 *  ********.** *********** *

9. spacer 1.1|669101|29|NZ_CP048047|CRT matches to NZ_CP052095 (Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.793

gcggcgcgtacgaccgcggccagcgcggc	CRISPR spacer
ccttcgcgtacggcctcggccagcgcgcc	Protospacer
 *  ********.** *********** *

10. spacer 1.1|669101|29|NZ_CP048047|CRT matches to NZ_CP052077 (Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.793

gcggcgcgtacgaccgcggccagcgcggc	CRISPR spacer
ccttcgcgtacggcctcggccagcgcgcc	Protospacer
 *  ********.** *********** *

11. spacer 1.1|669101|29|NZ_CP048047|CRT matches to NZ_CP052097 (Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.793

gcggcgcgtacgaccgcggccagcgcggc	CRISPR spacer
ccttcgcgtacggcctcggccagcgcgcc	Protospacer
 *  ********.** *********** *

12. spacer 1.1|669101|29|NZ_CP048047|CRT matches to NZ_CP052079 (Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.793

gcggcgcgtacgaccgcggccagcgcggc	CRISPR spacer
ccttcgcgtacggcctcggccagcgcgcc	Protospacer
 *  ********.** *********** *

13. spacer 1.1|669101|29|NZ_CP048047|CRT matches to NZ_CP052093 (Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.793

gcggcgcgtacgaccgcggccagcgcggc	CRISPR spacer
ccttcgcgtacggcctcggccagcgcgcc	Protospacer
 *  ********.** *********** *

14. spacer 1.1|669101|29|NZ_CP048047|CRT matches to NZ_CP052101 (Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.793

gcggcgcgtacgaccgcggccagcgcggc	CRISPR spacer
ccttcgcgtacggcctcggccagcgcgcc	Protospacer
 *  ********.** *********** *

15. spacer 1.1|669101|29|NZ_CP048047|CRT matches to NZ_CP052099 (Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.793

gcggcgcgtacgaccgcggccagcgcggc	CRISPR spacer
ccttcgcgtacggcctcggccagcgcgcc	Protospacer
 *  ********.** *********** *

16. spacer 1.1|669101|29|NZ_CP048047|CRT matches to NZ_CP052125 (Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.793

gcggcgcgtacgaccgcggccagcgcggc	CRISPR spacer
ccttcgcgtacggcctcggccagcgcgcc	Protospacer
 *  ********.** *********** *

17. spacer 1.1|669101|29|NZ_CP048047|CRT matches to NZ_CP052129 (Ralstonia solanacearum strain FJAT1303.F1 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.793

gcggcgcgtacgaccgcggccagcgcggc	CRISPR spacer
ccttcgcgtacggcctcggccagcgcgcc	Protospacer
 *  ********.** *********** *

18. spacer 1.1|669101|29|NZ_CP048047|CRT matches to NZ_CP052123 (Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.793

gcggcgcgtacgaccgcggccagcgcggc	CRISPR spacer
ccttcgcgtacggcctcggccagcgcgcc	Protospacer
 *  ********.** *********** *

19. spacer 1.1|669101|29|NZ_CP048047|CRT matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.793

gcggcgcgtacgaccgcggccagcgcggc	CRISPR spacer
gccacgcgtaccaccgcgtccagcgcgcg	Protospacer
** .******* ****** ********

20. spacer 1.1|669101|29|NZ_CP048047|CRT matches to NZ_CP052081 (Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.793

gcggcgcgtacgaccgcggccagcgcggc	CRISPR spacer
ccttcgcgtacggcctcggccagcgcgcc	Protospacer
 *  ********.** *********** *

21. spacer 1.1|669101|29|NZ_CP048047|CRT matches to NZ_CP052083 (Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.793

gcggcgcgtacgaccgcggccagcgcggc	CRISPR spacer
ccttcgcgtacggcctcggccagcgcgcc	Protospacer
 *  ********.** *********** *

22. spacer 1.1|669101|29|NZ_CP048047|CRT matches to NZ_CP052091 (Ralstonia solanacearum strain FJAT15340.F6 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.793

gcggcgcgtacgaccgcggccagcgcggc	CRISPR spacer
ccttcgcgtacggcctcggccagcgcgcc	Protospacer
 *  ********.** *********** *

23. spacer 1.1|669101|29|NZ_CP048047|CRT matches to NC_042350 (Salinibacter virus M8CR30-2, complete genome) position: , mismatch: 7, identity: 0.759

gcggcgcgtacgaccgcggccagcgcggc	CRISPR spacer
tcggcgcgtacgagcgcggacagcgttcg	Protospacer
 ************ ***** *****.

24. spacer 1.1|669101|29|NZ_CP048047|CRT matches to MF580958 (Salinibacter virus M8CR30-4, partial genome) position: , mismatch: 7, identity: 0.759

gcggcgcgtacgaccgcggccagcgcggc	CRISPR spacer
tcggcgcgtacgagcgcggacagcgttcg	Protospacer
 ************ ***** *****.

25. spacer 1.3|669188|32|NZ_CP048047|CRT matches to NZ_LR134466 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 24, complete sequence) position: , mismatch: 7, identity: 0.781

acgaccgtccggcccgtggtggcgagcggtcc	CRISPR spacer
agcaccgtcaggcccgcggtggcgagcacgcc	Protospacer
*  ****** ******.**********.  **

26. spacer 1.1|669101|29|NZ_CP048047|CRT matches to NC_019790 (Deinococcus peraridilitoris DSM 19664 plasmid pDEIPE02, complete sequence) position: , mismatch: 8, identity: 0.724

gcggcgcgtacgaccgcggccagcgcggc	CRISPR spacer
gcggcgcgaacgaccgcggccacactttt	Protospacer
******** *************   .  .

27. spacer 1.3|669188|32|NZ_CP048047|CRT matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 8, identity: 0.75

acgaccgtccggcccgtggtggcgagcggtcc	CRISPR spacer
gagccggtccagctcgtggtggcgagcggcgc	Protospacer
. * * ****.**.***************. *

28. spacer 1.3|669188|32|NZ_CP048047|CRT matches to NC_010311 (Streptomyces sp. HK1 plasmid pSHK1, complete sequence) position: , mismatch: 9, identity: 0.719

acgaccgtccggcccgtggtggcgagcggtcc	CRISPR spacer
gcctccgcccggcccgtggtggcgaccgcggg	Protospacer
.*  ***.***************** **

29. spacer 1.3|669188|32|NZ_CP048047|CRT matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

acgaccgtccggcccgtggtggcgagcggtcc	CRISPR spacer
gaaccggtccagctcgtggtggcgagcggcgc	Protospacer
. . * ****.**.***************. *

30. spacer 1.3|669188|32|NZ_CP048047|CRT matches to NZ_CP029339 (Streptomyces sp. SM17 plasmid pSM17A, complete sequence) position: , mismatch: 9, identity: 0.719

acgaccgtccggcccgtggtggcgagcggtcc	CRISPR spacer
gcctccgcccggcccgtggtggcgaccgcggg	Protospacer
.*  ***.***************** **

31. spacer 1.3|669188|32|NZ_CP048047|CRT matches to NC_010580 (Beijerinckia indica subsp. indica ATCC 9039 plasmid pBIND01, complete sequence) position: , mismatch: 10, identity: 0.688

acgaccgtccggcccgtggtggcgagcggtcc	CRISPR spacer
gttctccgccggcccgtggtgtcgagcgatct	Protospacer
..  .*  ************* ******.**.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

762817 : 772719

Red_sea_bream_iridovirus(12.5%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_167436123.1\|762817_763351_+	O-acetyl-ADP-ribose deacetylase	F1SVT2	Red_sea_bream_iridovirus	3.7e-28	49.7
WP_167436124.1\|764165_765461_+	peptidoglycan DD-metalloendopeptidase family protein	G9BW84	Planktothrix_phage	6.1e-16	47.4
WP_167436125.1\|765474_766848_+	C40 family peptidase	A0A0A8WIF2	Clostridium_phage	8.2e-11	41.9
WP_053773846.1\|766931_767453_-	inorganic diphosphatase	A0A2H4J8U1	uncultured_Caudovirales_phage	6.9e-35	51.0
WP_167436126.1\|767507_768533_+\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_086526996.1\|768534_769086_+	hypoxanthine phosphoribosyltransferase	A0A1V0SEQ1	Hokovirus	2.0e-08	31.5
WP_167436127.1\|769244_771245_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	E5EQ50	Micromonas_sp._RCC1109_virus	2.2e-105	45.6
WP_167436128.1\|771250_771841_+	GTP cyclohydrolase I	E7DN69	Pneumococcus_phage	9.8e-30	42.8
WP_167437344.1\|771876_772719_+	dihydropteroate synthase	S4VNV0	Pandoravirus	1.0e-24	34.9

DBSCAN-SWA_2

948869 : 955775

Escherichia_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_167436214.1\|948869_950009_-	glycosyltransferase family 4 protein	J7Q7I8	Aeropyrum_coil-shaped_virus	5.6e-05	28.1
WP_167436215.1\|950100_950847_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.5e-11	26.9
WP_080754849.1\|950830_951700_-	ABC transporter permease	NA	NA	NA	NA
WP_167436216.1\|951794_952649_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.3e-27	36.8
WP_053773983.1\|952645_953635_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	5.4e-73	42.2
WP_167436217.1\|953806_954277_+	GtrA family protein	NA	NA	NA	NA
WP_167436218.1\|954302_954908_+	dTDP-4-keto-6-deoxy-D-glucose epimerase	A0A1D7XFA9	Escherichia_phage	1.7e-24	35.4
WP_043670033.1\|954911_955775_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	7.5e-95	59.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP048047

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection