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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP048049 Clavibacter michiganensis subsp. capsici strain 1101 chromosome, complete genome 2 crisprs csa3,WYL,DEDDh,cas3 2 4 2 0
NZ_CP048050 Clavibacter michiganensis subsp. capsici strain 1101 plasmid pCM2_1101, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP048049
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP048049_1 2695846-2696049 Orphan NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP048049_2 3027447-3027523 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP048049_1 1.1|2695870|21|NZ_CP048049|CRISPRCasFinder 2695870-2695890 21 NZ_CP048049.1 315326-315346 2 0.905
NZ_CP048049_1 1.1|2695870|21|NZ_CP048049|CRISPRCasFinder 2695870-2695890 21 NZ_CP048049.1 855238-855258 2 0.905
NZ_CP048049_1 1.1|2695870|21|NZ_CP048049|CRISPRCasFinder 2695870-2695890 21 NZ_CP048049.1 2354889-2354909 2 0.905
NZ_CP048049_1 1.1|2695870|21|NZ_CP048049|CRISPRCasFinder 2695870-2695890 21 NZ_CP048049.1 2812846-2812866 2 0.905
NZ_CP048049_1 1.3|2695960|21|NZ_CP048049|CRISPRCasFinder 2695960-2695980 21 NZ_CP048049.1 1005701-1005721 2 0.905

1. spacer 1.1|2695870|21|NZ_CP048049|CRISPRCasFinder matches to position: 315326-315346, mismatch: 2, identity: 0.905

cgctcgcgggcgtcggcctca	CRISPR spacer
cgctcgtgagcgtcggcctca	Protospacer
******.*.************

2. spacer 1.1|2695870|21|NZ_CP048049|CRISPRCasFinder matches to position: 855238-855258, mismatch: 2, identity: 0.905

cgctcgcgggcgtcggcctca	CRISPR spacer
cgctcgcgggcttcgccctca	Protospacer
*********** *** *****

3. spacer 1.1|2695870|21|NZ_CP048049|CRISPRCasFinder matches to position: 2354889-2354909, mismatch: 2, identity: 0.905

cgctcgcgggcgtcggcctca	CRISPR spacer
cgcccgcgggcggcggcctca	Protospacer
***.******** ********

4. spacer 1.1|2695870|21|NZ_CP048049|CRISPRCasFinder matches to position: 2812846-2812866, mismatch: 2, identity: 0.905

cgctcgcgggcgtcggcctca	CRISPR spacer
cgctcgcgggcctcggccgca	Protospacer
*********** ****** **

5. spacer 1.3|2695960|21|NZ_CP048049|CRISPRCasFinder matches to position: 1005701-1005721, mismatch: 2, identity: 0.905

acctcgcgggcctccgcctcg	CRISPR spacer
acctcgcgggccgccgcgtcg	Protospacer
************ **** ***

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP048049_1 1.3|2695960|21|NZ_CP048049|CRISPRCasFinder 2695960-2695980 21 NZ_CP025552 Streptomyces rimosus strain WT5260 plasmid unnamed, complete sequence 259024-259044 0 1.0
NZ_CP048049_1 1.1|2695870|21|NZ_CP048049|CRISPRCasFinder 2695870-2695890 21 MG941013 Actinomyces phage xhp1, complete genome 17618-17638 1 0.952
NZ_CP048049_1 1.2|2695915|21|NZ_CP048049|CRISPRCasFinder 2695915-2695935 21 NZ_CP042264 Litoreibacter sp. LN3S51 plasmid unnamed3, complete sequence 22518-22538 1 0.952
NZ_CP048049_1 1.2|2695915|21|NZ_CP048049|CRISPRCasFinder 2695915-2695935 21 MH045567 Microbacterium phage Elva, complete genome 8033-8053 1 0.952
NZ_CP048049_1 1.3|2695960|21|NZ_CP048049|CRISPRCasFinder 2695960-2695980 21 NZ_CP016083 Streptomyces sp. SAT1 plasmid unnamed3, complete sequence 508734-508754 1 0.952
NZ_CP048049_1 1.3|2695960|21|NZ_CP048049|CRISPRCasFinder 2695960-2695980 21 NC_020894 Streptomyces hygroscopicus subsp. jinggangensis TL01 plasmid pSHJGH1, complete sequence 133667-133687 1 0.952
NZ_CP048049_1 1.3|2695960|21|NZ_CP048049|CRISPRCasFinder 2695960-2695980 21 NC_017766 Streptomyces hygroscopicus subsp. jinggangensis 5008 plasmid pSHJG1, complete sequence 133668-133688 1 0.952
NZ_CP048049_1 1.3|2695960|21|NZ_CP048049|CRISPRCasFinder 2695960-2695980 21 MT701594 Streptomyces phage Spernnie, complete genome 40898-40918 1 0.952
NZ_CP048049_1 1.3|2695960|21|NZ_CP048049|CRISPRCasFinder 2695960-2695980 21 MK937606 Microbacterium phage Margaery, complete genome 35805-35825 1 0.952
NZ_CP048049_1 1.3|2695960|21|NZ_CP048049|CRISPRCasFinder 2695960-2695980 21 MK937591 Microbacterium phage Cinna, complete genome 36576-36596 1 0.952
NZ_CP048049_2 2.1|3027471|29|NZ_CP048049|CRISPRCasFinder 3027471-3027499 29 NC_013208 Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 plasmid pAACI03, complete sequence 4745-4773 8 0.724

1. spacer 1.3|2695960|21|NZ_CP048049|CRISPRCasFinder matches to NZ_CP025552 (Streptomyces rimosus strain WT5260 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

acctcgcgggcctccgcctcg	CRISPR spacer
acctcgcgggcctccgcctcg	Protospacer
*********************

2. spacer 1.1|2695870|21|NZ_CP048049|CRISPRCasFinder matches to MG941013 (Actinomyces phage xhp1, complete genome) position: , mismatch: 1, identity: 0.952

cgctcgcgggcgtcggcctca	CRISPR spacer
cgctcgcgggcgtgggcctca	Protospacer
************* *******

3. spacer 1.2|2695915|21|NZ_CP048049|CRISPRCasFinder matches to NZ_CP042264 (Litoreibacter sp. LN3S51 plasmid unnamed3, complete sequence) position: , mismatch: 1, identity: 0.952

cggtcctcgacgtcgcgctgg	CRISPR spacer
cggtcatcgacgtcgcgctgg	Protospacer
***** ***************

4. spacer 1.2|2695915|21|NZ_CP048049|CRISPRCasFinder matches to MH045567 (Microbacterium phage Elva, complete genome) position: , mismatch: 1, identity: 0.952

cggtcctcgacgtcgcgctgg	CRISPR spacer
cggtcctcgaggtcgcgctgg	Protospacer
********** **********

5. spacer 1.3|2695960|21|NZ_CP048049|CRISPRCasFinder matches to NZ_CP016083 (Streptomyces sp. SAT1 plasmid unnamed3, complete sequence) position: , mismatch: 1, identity: 0.952

acctcgcgggcctccgcctcg	CRISPR spacer
acctcgcgggcctcggcctcg	Protospacer
************** ******

6. spacer 1.3|2695960|21|NZ_CP048049|CRISPRCasFinder matches to NC_020894 (Streptomyces hygroscopicus subsp. jinggangensis TL01 plasmid pSHJGH1, complete sequence) position: , mismatch: 1, identity: 0.952

acctcgcgggcctccgcctcg	CRISPR spacer
acctcgcgggcctccgcatcg	Protospacer
***************** ***

7. spacer 1.3|2695960|21|NZ_CP048049|CRISPRCasFinder matches to NC_017766 (Streptomyces hygroscopicus subsp. jinggangensis 5008 plasmid pSHJG1, complete sequence) position: , mismatch: 1, identity: 0.952

acctcgcgggcctccgcctcg	CRISPR spacer
acctcgcgggcctccgcatcg	Protospacer
***************** ***

8. spacer 1.3|2695960|21|NZ_CP048049|CRISPRCasFinder matches to MT701594 (Streptomyces phage Spernnie, complete genome) position: , mismatch: 1, identity: 0.952

acctcgcgggcctccgcctcg	CRISPR spacer
acctcgccggcctccgcctcg	Protospacer
******* *************

9. spacer 1.3|2695960|21|NZ_CP048049|CRISPRCasFinder matches to MK937606 (Microbacterium phage Margaery, complete genome) position: , mismatch: 1, identity: 0.952

acctcgcgggcctccgcctcg	CRISPR spacer
acctcgcgggcctcctcctcg	Protospacer
*************** *****

10. spacer 1.3|2695960|21|NZ_CP048049|CRISPRCasFinder matches to MK937591 (Microbacterium phage Cinna, complete genome) position: , mismatch: 1, identity: 0.952

acctcgcgggcctccgcctcg	CRISPR spacer
acctcgcgggcctcctcctcg	Protospacer
*************** *****

11. spacer 2.1|3027471|29|NZ_CP048049|CRISPRCasFinder matches to NC_013208 (Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 plasmid pAACI03, complete sequence) position: , mismatch: 8, identity: 0.724

aggtccgtccccgtgcacagcggaatgca	CRISPR spacer
gaacccgtcccggtggacagcggaatgtg	Protospacer
....******* *** ***********..

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 760107 : 771204 10 Gordonia_phage(11.11%) tRNA NA
DBSCAN-SWA_2 947124 : 954012 8 Escherichia_phage(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage