CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP048050	Clavibacter michiganensis subsp. capsici strain 1101 plasmid pCM2_1101, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP048049	Clavibacter michiganensis subsp. capsici strain 1101 chromosome, complete genome	2 crisprs	csa3,WYL,DEDDh,cas3	2	4	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP048049_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048049_1

2695846-2696049

Orphan

Consensus_repeat	Method
CGGGCGTCGCGCTCGCGTGCCTCG	CRISPRCasFinder

4 spacers

The CRISPR arrays of NZ_CP048049_1

>merge|NZ_CP048049|1|2695846-2696049|CRISPRCasFinder
CGGGCGCGGCGGTCGCGCTCCTCGCGCTCGCGGGCGTCGGCCTCACGGGCCTCGCGCTCGCGGCGCTCGCGGTCCTCGACGTCGCGCTGGCGGGCCTCCGCCTCGCGCGCCTCGACCTCGCGGGCCTCCGCCTCGCGCGCCTCGCGCTCGCGGGCGTCGCGCTCGCGTGCCTCGGCGATGCGGGCCTCGGACTCGCGTGCCTCC

>NZ_CP048049|1|1|2695846-2696049|CRISPRCasFinder
CGGGCGCGGCGGTCGCGCTCCTCG	CGCTCGCGGGCGTCGGCCTCA
CGGGCCTCGCGCTCGCGGCGCTCG	CGGTCCTCGACGTCGCGCTGG
CGGGCCTCCGCCTCGCGCGCCTCG	ACCTCGCGGGCCTCCGCCTCG
CGCGCCTCGCGCTCGCGGGCGTCG	CGCTCGCGTGCCTCGGCGATG
CGGGCCTCGGACTCGCGTGCCTCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048049.1\|WP_167441248.1\|2703469_2706958_-\|DNA-directed-RNA-polymerase-subunit-beta	unknown	unknown	gnl\|CDD\|234749
NZ_CP048049.1\|WP_012039307.1\|2688367_2688676_-\|30S-ribosomal-protein-S10	unknown	unknown	gnl\|CDD\|179076
NZ_CP048049.1\|WP_012039304.1\|2686750_2687050_-\|50S-ribosomal-protein-L23	unknown	unknown	gnl\|CDD\|235586
NZ_CP048049.1\|WP_053775261.1\|2691545_2693660_-\|elongation-factor-G	unknown	unknown	gnl\|CDD\|234569
NZ_CP048049.1\|WP_053775265.1\|2697152_2697818_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP048049.1\|WP_053775271.1\|2707985_2708843_+\|spermine-synthase	unknown	unknown	gnl\|CDD\|179854
NZ_CP048049.1\|WP_012039311.1\|2693707_2694178_-\|30S-ribosomal-protein-S7	unknown	unknown	gnl\|CDD\|235398
NZ_CP048049.1\|WP_053775272.1\|2708890_2710075_+\|glucose-dehydrogenase	unknown	unknown	gnl\|CDD\|369642
NZ_CP048049.1\|WP_053775259.1\|2689114_2690083_-\|DNA-topoisomerase-IB	unknown	unknown	gnl\|CDD\|226099
NZ_CP048049.1\|WP_043668795.1\|2687046_2687703_-\|50S-ribosomal-protein-L4	unknown	unknown	gnl\|CDD\|235404
NZ_CP048049.1\|WP_053775267.1\|2698899_2699385_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048049.1\|WP_167441247.1\|2699521_2703421_-\|DNA-directed-RNA-polymerase-subunit-beta'	unknown	unknown	gnl\|CDD\|234794
NZ_CP048049.1\|WP_167435237.1\|2694177_2694552_-\|30S-ribosomal-protein-S12	unknown	unknown	gnl\|CDD\|235355
NZ_CP048049.1\|WP_053775266.1\|2697862_2698711_-\|amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270429
NZ_CP048049.1\|WP_053775260.1\|2690239_2691433_-\|elongation-factor-Tu	unknown	unknown	gnl\|CDD\|234596
NZ_CP048049.1\|WP_053775264.1\|2696326_2697166_-\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP048049.1\|WP_053775270.1\|2707264_2707933_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293792
NZ_CP048049.1\|WP_043668753.1\|2710085_2710616_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048049.1\|WP_053775262.1\|2694817_2695243_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048049.1\|WP_053775258.1\|2687705_2688359_-\|50S-ribosomal-protein-L3	unknown	unknown	gnl\|CDD\|234564

Protein	Function_ID	Function_description	E-value
NZ_CP048049.1\|WP_167441248.1\|2703469_2706958_-\|DNA-directed-RNA-polymerase-subunit-beta	gnl\|CDD\|234749	PRK00405, rpoB, DNA-directed RNA polymerase subunit beta; Reviewed.	0
NZ_CP048049.1\|WP_012039307.1\|2688367_2688676_-\|30S-ribosomal-protein-S10	gnl\|CDD\|179076	PRK00596, rpsJ, 30S ribosomal protein S10; Reviewed.	7.47425e-65
NZ_CP048049.1\|WP_012039304.1\|2686750_2687050_-\|50S-ribosomal-protein-L23	gnl\|CDD\|235586	PRK05738, rplW, 50S ribosomal protein L23; Reviewed.	1.59876e-39
NZ_CP048049.1\|WP_053775261.1\|2691545_2693660_-\|elongation-factor-G	gnl\|CDD\|234569	PRK00007, PRK00007, elongation factor G; Reviewed.	0
NZ_CP048049.1\|WP_012039311.1\|2693707_2694178_-\|30S-ribosomal-protein-S7	gnl\|CDD\|235398	PRK05302, PRK05302, 30S ribosomal protein S7; Validated.	8.25213e-100
NZ_CP048049.1\|WP_053775271.1\|2707985_2708843_+\|spermine-synthase	gnl\|CDD\|179854	PRK04457, PRK04457, polyamine aminopropyltransferase.	2.80941e-10
NZ_CP048049.1\|WP_053775265.1\|2697152_2697818_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	2.10576e-83
NZ_CP048049.1\|WP_053775272.1\|2708890_2710075_+\|glucose-dehydrogenase	gnl\|CDD\|369642	pfam07995, GSDH, Glucose / Sorbosone dehydrogenase. Members of this family are glucose/sorbosone dehydrogenases that possess a beta-propeller fold.	2.92646e-72
NZ_CP048049.1\|WP_053775259.1\|2689114_2690083_-\|DNA-topoisomerase-IB	gnl\|CDD\|226099	COG3569, COG3569, Topoisomerase IB [DNA replication, recombination, and repair].	7.03466e-65
NZ_CP048049.1\|WP_043668795.1\|2687046_2687703_-\|50S-ribosomal-protein-L4	gnl\|CDD\|235404	PRK05319, rplD, 50S ribosomal protein L4; Provisional.	4.41901e-103
NZ_CP048049.1\|WP_167441247.1\|2699521_2703421_-\|DNA-directed-RNA-polymerase-subunit-beta'	gnl\|CDD\|234794	PRK00566, PRK00566, DNA-directed RNA polymerase subunit beta'; Provisional.	0
NZ_CP048049.1\|WP_053775266.1\|2697862_2698711_-\|amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270429	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold. This subgroup includes cystine-binding domain of periplasmic receptor-dependent ATP-binding cassette transporters from Neisseria gonorrhoeae and Bacillus subtilis and their related proteins. Cystine is an oxidized dimeric form of cysteine that is required for optimal bacterial growth. In Bacillus subtilis, three ABC transporters, TcyJKLMN (YtmJKLMN), TcyABC (YckKJI), and YxeMNO are involved in uptake of cystine. Likewise, three uptake systems were identified in Salmonella enterica serovar Typhimurium, while in Escherichia coli, two transport systems seem to be involved in cystine uptake. Moreover, L-cystine limitation was shown to prevent virulence of Neisseria gonorrhoeae; thus, its L-cystine solute receptor (Ngo0372) may be suited as target for an antimicrobial vaccine. The cystine receptor belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	5.67394e-121
NZ_CP048049.1\|WP_053775260.1\|2690239_2691433_-\|elongation-factor-Tu	gnl\|CDD\|234596	PRK00049, PRK00049, elongation factor Tu; Reviewed.	0
NZ_CP048049.1\|WP_053775264.1\|2696326_2697166_-\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	1.38168e-131
NZ_CP048049.1\|WP_053775270.1\|2707264_2707933_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293792	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) for which this fold was named perform only a small fraction of the activities included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases which can catalyze the hydrolysis of a wide range of beta-lactam antibiotics, hydroxyacylglutathione hydrolases (also called glyoxalase II) which hydrolyze S-d-lactoylglutathione to d-lactate in the second step of the glycoxlase system, AHL lactonases which catalyze the hydrolysis and opening of the homoserine lactone rings of acyl homoserine lactones (AHLs), persulfide dioxygenase which catalyze the oxidation of glutathione persulfide to glutathione and persulfite in the mitochondria, flavodiiron proteins which catalyze the reduction of oxygen and/or nitric oxide to water or nitrous oxide respectively, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J which has both 5'-3' exoribonucleolytic and endonucleolytic activity and ribonuclease Z which catalyzes the endonucleolytic removal of the 3' extension of the majority of tRNA precursors, cyclic nucleotide phosphodiesterases which decompose cyclic adenosine and guanosine 3', 5'-monophosphate (cAMP and cGMP) respectively, insecticide hydrolases, and proteins required for natural transformation competence. The diversity of biological roles is reflected in variations in the active site metallo-chemistry, for example classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, human persulfide dioxygenase ETHE1 is a mono-iron binding member of the superfamily; Arabidopsis thaliana hydroxyacylglutathione hydrolases incorporates iron, manganese, and zinc in its dinuclear metal binding site, and flavodiiron proteins contains a diiron site.	3.00685e-36
NZ_CP048049.1\|WP_167435237.1\|2694177_2694552_-\|30S-ribosomal-protein-S12	gnl\|CDD\|235355	PRK05163, rpsL, 30S ribosomal protein S12; Validated.	7.7279e-84
NZ_CP048049.1\|WP_053775258.1\|2687705_2688359_-\|50S-ribosomal-protein-L3	gnl\|CDD\|234564	PRK00001, rplC, 50S ribosomal protein L3; Validated.	3.06881e-122

>NZ_CP048049.1|WP_053775262.1|2694817_2695243_-|hypothetical-protein
MIPLLAAVLHVALVVCVFGFVSLLGGDEVIPERDAGVLLGPLMVLSATLVFAGGLVRTARAADRERRIAVLPVVGWGAAAWLAYGIVGAVVYLAGGADAFASLAFAIRHLVDPFGIAVLGVSVLLGLGAVALAARGPSSTV
>NZ_CP048049.1|WP_167435237.1|2694177_2694552_-|30S-ribosomal-protein-S12
MPTIQQLVRKGRTPKVVKTKAPALKANPQQRGVCTRVYTTTPRKPNSALRKVARVKLSNGQEVTAYIPGEGHNLQEHSMVLVRGGRVKDLPGVRYKIVRGALDTQAVKNRKQARSRYGAKMEKK
>NZ_CP048049.1|WP_012039311.1|2693707_2694178_-|30S-ribosomal-protein-S7
MPRKGPAPKRPVVADPVYGAPIVSQLVNKILLDGKKGLAEKIVYDALAGVAAKNGQDAVVTLKKALDNVRPALEVRSRRVGGSTYQVPIEVKPHRANTLALRWLTTYAKSRREKTMTERLTNEILDASNGLGAAVKRREDTHKMAESNKAFAHYRW
>NZ_CP048049.1|WP_053775261.1|2691545_2693660_-|elongation-factor-G
MAQDVLTDLNKVRNIGIMAHIDAGKTTTTERILFYTGITHKIGEVHDGAATMDWMAQEQERGITITSAATTCFWNKNQINIIDTPGHVDFTVEVERSLRVLDGAVAVFDGKEGVEPQSETVWRQADKYDVPRICFVNKMDKLGADFYFTVDTIVNRLGAKPLVIQLPIGSESGFEGVIDLVEMRALTWRGDSKGDVELGAKYEIEEIPADLQDKADEYRAKLLETVAETDDALLEKYFGGEELTVAEIKAAIRKLTVNSEIYPVLCGSAFKNRGVQPMLDAVIDYLPSPLDVPPMEGHDVRDEEKVIIRKPDATEPFSALAFKVAVHPFFGRLTYVRVYSGTIAGGSQVINSTKGKKERIGKIFQMHSNKENPVDSVTAGHIYAVIGLKDTTTGDTLCDPNEQIVLESMTFPEPVIEVAIEPKTKADQEKLGVAIQKLAEEDPTFRTEQNQETGQTVIKGMGELHLDILVDRMKREFNVEANVGKPQVAYRETIRGTVDKHDFTHKKQTGGSGQFAKIQIKIEPMEVTAEKTYEFDNKVTGGRVPREYIPSVDAGIQDALQVGVLAGYPMVGVKATLLDGAAHDVDSSEMAFKIAGSMAFKEAARKAKPVLLEPLMAVEVRTPEEYMGDVIGDLNSRRGQIQAMEDASGVKVITANVPLSEMFGYVGDLRSKTSGRAVYSMSFGSYAEVPKAVADEIVQKNKGE
>NZ_CP048049.1|WP_053775260.1|2690239_2691433_-|elongation-factor-Tu
MGKAKFERTKPHVNIGTIGHVDHGKTTLTAAISKVLADKYPSATNVQRDFASIDSAPEERQRGITINISHVEYETPKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMAQTREHVLLAKQVGVPYLLVALNKSDMVDDEEILELVELEVRELLSSQDFDGDNAPVVQVSGLKALEGDEKWVEQIVKLMDAVDDSIPEPVRDKDKPFLMPVEDVFTITGRGTVVTGRAERGTLAINSDVEIVGIRPTVKTTVTGIEMFHKQLDEAWAGENCGLLLRGTKREDVERGQVIVKPGSVTPHTDFEGTAYILSKEEGGRHNPFYANYRPQFYFRTTDVTGVITLPEGTEMVMPGDTTDMNVALIQPIAMEEGLGFAIREGGRTVGAGTVTKIVK
>NZ_CP048049.1|WP_053775259.1|2689114_2690083_-|DNA-topoisomerase-IB
MVRLRRSDATGKGYTRKRSGKGWTYLDSDGNRVTDRELRARMEHLGIPPAWTDVWIAPYANGHVQATGMDSAGRRQYIYHPTWREQKDRIKFDRALQLAESLPAARRQVTMHLRQEGHTRERALAAGFRMLDTGSLRVGSERYAESNGSHGLSTLLCSHVTIHGDSVHLEFPAKSGQEWSSDIRDADLVQAIQGLKRRGANARLLAYRDGSDWHPLGAADINDYVRERTGGEFTAKDFRTLHGTVAAAISLAKHGPEETKGKRQRALAQAYRDASEVLSNTPTIAKNSYVDPRLVDEYVHGRTIDPQRLGSGETELRNLLYR
>NZ_CP048049.1|WP_012039307.1|2688367_2688676_-|30S-ribosomal-protein-S10
MAGQKIRIRLKSYDHSVIDSSARKIVDTVTRAGATVVGPVPLPTEKNVICVIRSPHKYKDSREHFEMRTHKRLIDIVDPTPKAVDSLMRLDLPADVNIEIKL
>NZ_CP048049.1|WP_053775258.1|2687705_2688359_-|50S-ribosomal-protein-L3
MSTANRTFTGLLGTKLGMTQVWDENNKLIPVTVVQITPNVVTQVRTPEVDGYGAIQIAYGQIDPRKADKPSTGHFEKAGVTPRRHLTEVRTADFAEYSLGQEITVGAFEPGTKVDVVGTSKGKGFAGVMKRHNFKGVSASHGSHRNHRKPGSIGASSTPSRVFKGMRMAGRMGGERVTVLNLVVHSVDAEKGLLLVKGAVPGARGRIVFVRNAVKGK
>NZ_CP048049.1|WP_043668795.1|2687046_2687703_-|50S-ribosomal-protein-L4
MATDTQLDVLDATGAVTGSVDLPASIFDVQTNVPLIHQVVVAQLAAARQGTHKTKGRGEVSGAGRKPFKQKGTGRARQGSIRAPQMTGGGIVHGPTPRNYSQRTPKKMIAAALLGALSDRARGARLHVIESLSAGDVPSTKTVVALLDGIATSKHVLIVLERTDEVSLRSVRNIPTVHVLSYDQLNAYDVLVSDDIVFTKGAYDAFVASKTAKEEVAA
>NZ_CP048049.1|WP_012039304.1|2686750_2687050_-|50S-ribosomal-protein-L23
MSATQKDPRDIIIAPVVSEKSYGLIDQGKYTFIVDPRSNKTEIKLAIEKIFGVQVASVNTLNKQGKTRRTKFGMGKRKDTKRAIVSLKSGSIDIFTTVG
>NZ_CP048049.1|WP_053775264.1|2696326_2697166_-|amino-acid-ABC-transporter-ATP-binding-protein
MSPTDPADPAPAAHRAPGEPVLTVRGLRKSFGDNEVLRSIDLEVRRGGVTALIGPSGSGKTTVLRSLNGLEVPEQGVVEVAAADADSRSRTTGPLRVDFAAKPRNRELLALRDRSAMVFQQYNLFPHKTVLENVIEGPVQVQRRPVAEATREAEELLARVGLADKRDQHPFQLSGGQQQRVGIVRALALRPQILLFDEPTSALDPELVGEVLSVIKELADEAWTMVIVTHELAFARQVADEIVFMDGGVVVERGHPSQVLQHPAEERTRRFLQRLLEPF
>NZ_CP048049.1|WP_053775265.1|2697152_2697818_-|amino-acid-ABC-transporter-permease
MSREWDLFWSSFGPLALETIRGTIPLALVTFALGLAIALGLALMRLYGNRVVSGIARFYISVVRGTPLLVQLFVIFYGLPSIGVVLPPWPSAVIALSVNVGGYAAEIIRASILSVPRGQWEAGHTIGMSRAMTLRRIIVPQAARVSVPPLSNTFISLVKDTSLASVILVTELFKQAQLIASSTFEYMLLYLEAALIYWLVCLVLSFAQTRLERRLDRYVAH
>NZ_CP048049.1|WP_053775266.1|2697862_2698711_-|amino-acid-ABC-transporter-substrate-binding-protein
MSLRSRIRPSLALTGLVAVAALGLAGCASGDAGTGTAAGTSGTPAAASSLSDVQAAGKLVIGTEGTYSPFSFHEGSGSGALTGYDVDVATAVAGKLGVEPVFEETQFDGIFAGLEAGRWDVIANQISITDERKEVYDFSEPYTVSPGVIIVKGSDSGISSFADLEGKTTAQSLTSNWNELATESGAKVEAVEGFAQAVTLLQQGRVDATINDRLTLLDYQKQQGDSDLEVAAQTDDPSLNAFVLRKGSDDLVAAVDRALADLRADGTLASISEKYFGADVSQ
>NZ_CP048049.1|WP_053775267.1|2698899_2699385_-|hypothetical-protein
MRMLEDVVLAWRAHALRYATGSASSPGGGSGPCPACDASFFTGQEAIPHDAPHTAIHPLIAALEAARAEAALDARERLYRETRGPAYREHPFGMPAFVDYGERSAEIQHVVDQALARELVPLAPVIRQALDRFVALRLLELEGEIGPVADDGDGTDPEPLF
>NZ_CP048049.1|WP_167441247.1|2699521_2703421_-|DNA-directed-RNA-polymerase-subunit-beta'
MLDVTTFDELRIGLATADDIRRWSHGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWECSCGKYKRVRFKGIVCERCGVEVTKSAVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDMAPKDLEKVIYFAAYMVISVDEDARHEDMPGLENELRLEIKTLQDQRDSQIAERLGRLETDLAALEAEGAKSDQKRRAKDGAEKEMGQTRKAFDEDISRLERVWEEFRSLKVGELKPEDAVFHELQDRFGIYFEAHMGAEAIQKRLEAFDLEAEGELLREQIATGKGQKKIRAIKRLRVVSSFLATGNSPAAMVLQVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLRRLLDLGAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIIVGPQLKLHQCGLPKQMALELFKPFVIKRLIDLSHAQNIKAAKRMVERSRGQVWDVLEEIIRERPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCAAFNADFDGDQMAVHLPLSVEAQAEARILMLASNNILKPSDGRPVTLPTQDMIIGLHHLTTLKEGVAGEGRAFSSVAEAILAKDQLSLDLNAKVRIRLHDIYFGEGEAPEGVELDEKGKTVGPVLLETTLGRALFNETLPVDYPYIEAVADKGKLSEIVNDLAERYPKVEVAAALDRIKDAGFYWATRSGVTVALSDVLTPPTKAAILSGYEKQAAKVQGQFEKGLTTNAERRQELIEIWNKATAEVAKAMEDNLPADNNINRMVSSGARGNWMQVRQIAGMRGLVSNPKGEIIPRPIVHSYREGLTVAEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREDDCGTSRGLDLPIAIQAADGTSVRDSNVENSVYARSLAADAVNEAGEVVAPAGSDVGDVMIDHLIAAGVHEIKVRSVLTCESAVGVCAACYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVASADDITQGLPRVQELFEARTPKGASPIAEAAGRITIEDTDRSRKVILTPDNGDEPHVYPVLKRATLLVEDGQHVELGQQLHVGAIDPKEVLRVKGVREVQKHLVAGVQGVYRSQGVPIHDKHIEVIVRQMLRKVTVVEHGDTDLLPGELVDRARYNEVNRATLTEGKKTASARQEVMGITKASLATESWLSAASFQETTRVLTQAAMEGKSDPLMGLKENVIIGKLIPAGTGLAKYRDVTVTATEEAKAERYPNRIFTDESVFNESDLSFVDFDSFSSDDYTPGTYN
>NZ_CP048049.1|WP_167441248.1|2703469_2706958_-|DNA-directed-RNA-polymerase-subunit-beta
MAAARNATPTPQNGRDASRLSFAKITDTLTVPDLLALQTESFDWLVGSDVWKRRVEEGTKQGRTDLALNSGLEEIFEEISPIEDLGETMQLGFTNPYLEEQKYSIDECKERGKTYSAPLYVEAEFMNHLTGEIKTQTVFMGDFPLMTEKGTFIINGTERVVVSQLVRSPGVYFERQQEKTSDKDIYSARVIPSRGAWLEFEIDKRDQVGVRIDRKRKQSVTVFLKALGLTSEQILEEFKGVASIELTLEKDSILTKEEALKDIYRKLRPGEQVAAEAARALLDNFYFNPKRYDLAKVGRYKINRKLGIDKQLTDSVLTVEDILATIKYLVSLHANETKMNGVRDGKPVELRLDVDDIDHFGNRRIRAVGELIQNQVRTGLSRMERVVRERMTTQDIEAITPQTLINVRPVVAAIKEFFGTSQLSQFMDQNNPLAGLTHKRRLSALGPGGLSRERAGVEVRDVHPSHYGRMCPIETPEGPNIGLIGSLASFARINSFGFIETPYRRVVDGVVTENIDYLTASEEDEFLVAQANAPLTKDFRFAEDRVLVRPKGGEVELVPAENVHYMDVSPRQMVSVATSLIPFLEHDDANRALMGANMQRQAVPLLRSESPLVGTGMEGYAAIDAGDVLTADASGVVQEVSAEVVTIQLDEGGTQTYYLRKFDRSNQGTSYNHRVLVSAGDRIEAGEVIADGPATENGELALGKNLLVAFMPWEGHNFEDAIILSQNLVKDDTLSSIHIEEYEVDARDTKLGKEEITRDLPNVSPELLADLDERGIIRIGAEVRPGDILVGKVTPKGETELSAEERLLRAIFNEKSREVRDTSLKVPHGEQGTIIGVKVFDSQDGDDELGSGVNQRVVVFIAQKRKITEGDKLAGRHGNKGVISKILPVEDMPFLADGTPVDVILNPLGIPGRMNFGQVLETHLGWIAKQGWEVEGTPKWAERLPDHARQAPAGTKVATPVFDGALEEEIAGLLDSTTVTRDGDRLIGSSGKTRLFDGRSGEPFPEPISVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDDILGRVKVYEAIVKGENIQEPGIPESFKVLIKEMQSLCLNVEVLSADGQAVSLRDTDDEVFRAAEELGINISTRFESSSIDDI
>NZ_CP048049.1|WP_053775270.1|2707264_2707933_+|MBL-fold-metallo-hydrolase
MSDPWHVSPGGPSHAHRAGDVEIRKASVGPMDNDAYLLTDLDSGERLLVDAAADVDRLLALVAEPDPVGRVAVVVTTHGHPDHHGALAAVLDATEADSAVGDADAADLPVDADRRLADGDRIAFGGVEVEVVALRGHTPGSVALVLQPGDGSTHLLTGDSLFPGGVGSTQGDAGRFRQLMDDVEERLFARFPDDAHVHPGHGDSTTIGAERGSLAAWRERGW
>NZ_CP048049.1|WP_053775271.1|2707985_2708843_+|spermine-synthase
MPEHPSTVLSLSGHRAVIEPDRFVPGAYQLVVDGTPQSHVNMDDPGELFFEYVQRMGHVIDLLGDPGQAITALHLGAGALTIPRYVEATRPGSRQQVIELEQDLVELVREHLPWSRRASIRLRYGDAREVMGRLPQGLRGSVDLVVTDVFSGARTPAHITSREFHAEAAAFLAPGGIMTVNVADGHGLAFARGQAATIQDVLPHVAALAETQVLKGRRFGNVVFAASATPLPLDFVPRLLAGGPHPAKVVEGRELADFIAGASVVTDATAVPSPSPARSVFQTRP
>NZ_CP048049.1|WP_053775272.1|2708890_2710075_+|glucose-dehydrogenase
MNRRSRTRPARLAALGLAALVALTGCTNDDGSPVDVRATEPPAPSPAATDAGPAGVAPSGTPTAIATGLVSPWSTAELPSGSLLVSERDTARVVEVLADGTTRVAGTVAGVGPLGEGGLLGIATRQADGGTQLYAYLTSDTDNRIVRMDVTGEPGSLGLGPAEDVVTGIPRDANHNGGRIAFGPDGMLYATTGDANLRDAAQDPISLAGKILRLTPDGQGPSDNPTPGSPVYSMGHRNPQGIAWDAEGNLWSSEFGQDTWDELNLIEPGGNYGWPVVEGATDDAADDAYIDPVRQWRTDDASPSGLAVSGDTIFMAGLGGQRLWVIRPGAVVTDPIPDDRVTEFYTREFGRIRDVQAAPDGSLRMLTNNTDGRGTPRDGDDKLLRVELMPIQAG
>NZ_CP048049.1|WP_043668753.1|2710085_2710616_+|hypothetical-protein
MTGTAIIIGYDRDTLREKVDLRAAGERLDELEALRSLSAITEKVALLRMLGRLDEAWDMANAAVRQARFTGDRETLLACRIRRAQVQQYQGKLDIALQDLGGCVDEARAHEWYALEAFALQHRGKVHFDRGEYRLALGDFEDAYTLRTREGLPSDQLESSALAIDVAKERIAAQPA

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Crispr_ID: NZ_CP048049_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048049_2

3027447-3027523

Orphan

Consensus_repeat	Method
CGCGTGACCACCTCAGCCGGTCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP048049_2

>merge|NZ_CP048049|2|3027447-3027523|CRISPRCasFinder
CGCGTGACCACCTCAGCCGGTCACAGGTCCGTCCCCGTGCACAGCGGAATGCACGCGTGACCGCCTCAGCCGGTCAC

>NZ_CP048049|2|2|3027447-3027523|CRISPRCasFinder
CGCGTGACCACCTCAGCCGGTCAC	AGGTCCGTCCCCGTGCACAGCGGAATGCA
CGCGTGACCGCCTCAGCCGGTCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048049.1\|WP_053775550.1\|3033273_3035568_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236776
NZ_CP048049.1\|WP_053775541.1\|3017454_3018837_+\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|236452
NZ_CP048049.1\|WP_012039647.1\|3029808_3030261_-\|50S-ribosomal-protein-L9	unknown	unknown	gnl\|CDD\|234659
NZ_CP048049.1\|WP_167441259.1\|3035604_3037233_+\|murein-biosynthesis-integral-membrane-protein-MurJ	unknown	unknown	gnl\|CDD\|240528
NZ_CP048049.1\|WP_053775540.1\|3016913_3017441_+\|low-molecular-weight-phosphotyrosine-protein-phosphatase	unknown	unknown	gnl\|CDD\|319971
NZ_CP048049.1\|WP_053775546.1\|3025816_3027442_+\|peptide-chain-release-factor-3	unknown	unknown	gnl\|CDD\|226593
NZ_CP048049.1\|WP_012039648.1\|3030272_3030536_-\|30S-ribosomal-protein-S18	unknown	unknown	gnl\|CDD\|178997
NZ_CP048049.1\|WP_053775545.1\|3025341_3025731_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197716
NZ_CP048049.1\|WP_043668444.1\|3018919_3019189_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048049.1\|WP_053775542.1\|3019191_3019848_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225786
NZ_CP048049.1\|WP_043667765.1\|3031121_3031586_-\|30S-ribosomal-protein-S6	unknown	unknown	gnl\|CDD\|179034
NZ_CP048049.1\|WP_043667767.1\|3030572_3031118_-\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|236092
NZ_CP048049.1\|WP_081001914.1\|3020229_3021114_+\|ROK-family-protein	unknown	unknown	gnl\|CDD\|224851
NZ_CP048049.1\|WP_053775543.1\|3021163_3022285_+\|glycerate-kinase	unknown	unknown	gnl\|CDD\|376844
NZ_CP048049.1\|WP_157883574.1\|3027541_3027853_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226801
NZ_CP048049.1\|WP_053775552.1\|3037390_3038425_+\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|273540
NZ_CP048049.1\|WP_053775544.1\|3022339_3023524_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340830
NZ_CP048049.1\|WP_053775549.1\|3031749_3033180_-\|CCA-tRNA-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|131739
NZ_CP048049.1\|WP_081001936.1\|3023551_3025099_-\|SulP-family-inorganic-anion-transporter	unknown	unknown	gnl\|CDD\|223732
NZ_CP048049.1\|WP_053775548.1\|3027975_3029355_-\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|273206

Protein	Function_ID	Function_description	E-value
NZ_CP048049.1\|WP_053775550.1\|3033273_3035568_+\|hypothetical-protein	gnl\|CDD\|236776	PRK10856, PRK10856, cytoskeleton protein RodZ.	2.85421e-05
NZ_CP048049.1\|WP_053775541.1\|3017454_3018837_+\|adenylosuccinate-lyase	gnl\|CDD\|236452	PRK09285, PRK09285, adenylosuccinate lyase; Provisional.	0
NZ_CP048049.1\|WP_043667767.1\|3030572_3031118_-\|single-stranded-DNA-binding-protein	gnl\|CDD\|236092	PRK07772, PRK07772, single-stranded DNA-binding protein; Provisional.	1.04059e-83
NZ_CP048049.1\|WP_167441259.1\|3035604_3037233_+\|murein-biosynthesis-integral-membrane-protein-MurJ	gnl\|CDD\|240528	cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli MurJ (MviN) has been identified as essential for murein biosynthesis. It has been suggested that MurJ functions as the peptidoglycan lipid II flippase which is involved in translocation of lipid-anchored peptidoglycan precursors across the cytoplasmic membrane, though results obtained in Bacillus subtilis seem to indicate that its MurJ homologs are not essential for growth. Some MviN family members (e.g. in Mycobacterium tuberculosis) possess an extended C-terminal region that contains an intracellular pseudo-kinase domain and an extracellular domain resembling carbohydrate-binding proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	6.78501e-88
NZ_CP048049.1\|WP_053775540.1\|3016913_3017441_+\|low-molecular-weight-phosphotyrosine-protein-phosphatase	gnl\|CDD\|319971	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase. Low molecular weight protein tyrosine phosphatases (LMW-PTP) are a family of small soluble single-domain enzymes that are characterized by a highly conserved active site motif (V/I)CXGNXCRS and share no sequence similarity with other types of protein tyrosine phosphatases (PTPs). LMW-PTPs play important roles in many biological processes and are widely distributed in prokaryotes and eukaryotes.	6.5434e-62
NZ_CP048049.1\|WP_053775546.1\|3025816_3027442_+\|peptide-chain-release-factor-3	gnl\|CDD\|226593	COG4108, PrfC, Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis].	0
NZ_CP048049.1\|WP_012039648.1\|3030272_3030536_-\|30S-ribosomal-protein-S18	gnl\|CDD\|178997	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed.	1.74631e-28
NZ_CP048049.1\|WP_053775545.1\|3025341_3025731_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|197716	smart00422, HTH_MERR, helix_turn_helix, mercury resistance.	4.73231e-28
NZ_CP048049.1\|WP_012039647.1\|3029808_3030261_-\|50S-ribosomal-protein-L9	gnl\|CDD\|234659	PRK00137, rplI, 50S ribosomal protein L9; Reviewed.	2.90965e-58
NZ_CP048049.1\|WP_053775542.1\|3019191_3019848_-\|hypothetical-protein	gnl\|CDD\|225786	COG3247, HdeD, Uncharacterized conserved protein [Function unknown].	0.00370781
NZ_CP048049.1\|WP_043667765.1\|3031121_3031586_-\|30S-ribosomal-protein-S6	gnl\|CDD\|179034	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed.	1.45174e-40
NZ_CP048049.1\|WP_081001914.1\|3020229_3021114_+\|ROK-family-protein	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	1.5459e-27
NZ_CP048049.1\|WP_053775543.1\|3021163_3022285_+\|glycerate-kinase	gnl\|CDD\|376844	pfam02595, Gly_kinase, Glycerate kinase family. This is family of Glycerate kinases.	8.69987e-119
NZ_CP048049.1\|WP_157883574.1\|3027541_3027853_+\|hypothetical-protein	gnl\|CDD\|226801	COG4357, COG4357, Zinc finger domain containing protein (CHY type) [Function unknown].	1.32614e-30
NZ_CP048049.1\|WP_053775552.1\|3037390_3038425_+\|thioredoxin-disulfide-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	8.0593e-150
NZ_CP048049.1\|WP_053775544.1\|3022339_3023524_-\|glycosyltransferase	gnl\|CDD\|340830	cd03800, GT4_sucrose_synthase, sucrose-phosphate synthase and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.	2.58926e-100
NZ_CP048049.1\|WP_053775549.1\|3031749_3033180_-\|CCA-tRNA-nucleotidyltransferase	gnl\|CDD\|131739	TIGR02692, putative_tRNA_nucleotidyltransferase, tRNA adenylyltransferase. The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase. [Protein synthesis, tRNA and rRNA base modification].	0
NZ_CP048049.1\|WP_081001936.1\|3023551_3025099_-\|SulP-family-inorganic-anion-transporter	gnl\|CDD\|223732	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism].	1.16503e-122
NZ_CP048049.1\|WP_053775548.1\|3027975_3029355_-\|replicative-DNA-helicase	gnl\|CDD\|273206	TIGR00665, DnaB, replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of > 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. [DNA metabolism, DNA replication, recombination, and repair].	0

>NZ_CP048049.1|WP_053775546.1|3025816_3027442_+|peptide-chain-release-factor-3
MSTITPPRAPASASASPVLREASRRRTFAVISHPDAGKSTLTEALLLHAHAIGSAGAVHGKQGRKSTVSDWMDMEKERGISVSSAAIQFTHRDTVMNVVDTPGHADFSEDTYRVLSAVDAAIMLVDASRGLETQTMKLFEVCRQRRIPIITVINKWDRPGREPLDLMDEIKERTGLLPTPLTWPVGESGAFFGVVDRSTGECVHFTRTAGGASIAPETRMSPDEALAAAGSAWTDAVEESELLHEEGQDHDEESFLARRTTPVLFAAAVLNFGVTHILDALDAIAPAAQPRPDEQDRTRPVEDDFSGFVFKVQSGMNTAHRDRLAFMRICSGVFHRGMTVTHAQTGRPFVTKYAQQLFGRERSTVDDAYPGDVVGLVNASNIRVGDTLFDGSPVTFPRLPQFAPELFRVVRSKDTSTHKQFRKGIEQLDHEGVIQVMRSDLRGDQAPVLGAVGPMQFEVVVERMTNEFRAPLRMEPLEYQVARITDAASAPALAKTIGVEVLVRSDGTHIALITTPWRLKAIERDSPELTLVDAATALPDA
>NZ_CP048049.1|WP_053775545.1|3025341_3025731_+|MerR-family-transcriptional-regulator
MTRPAGPATMQIGELAERTGLSHRTLRHYDETGLLRPSGRSEGGFRLYTDEDLERLLLIRRMKPLGFSLEEMMRLLEVTDALDAAGPDDDVAALRAALAAFIADAEERRRRLAEHLGMADEFLDRLRAR
>NZ_CP048049.1|WP_081001936.1|3023551_3025099_-|SulP-family-inorganic-anion-transporter
MPPAAAEPTPSGPGSAGSAAPSPSPTVLEALRTPRILTREALAGLVVALALIPEAISFSIIAGVDPRVGLFSSFVMAVTIAFLGGRPAMISAATGAVALVIAPVAREHGMDHFLATVILAGLLQVVLAVLGVARLMRFIPRSVMVGFVNALAILIFTAQIPNLVDVPWLVYPLVAVGIAILVLLPRVTRVVPAPLVAIALLTAATVLGALAVPTVGDQGELPRSLPELFLPQVPLTLETLGIIGPYALAMALVGILESLMTAKLVDDITDTPSHKTRETWGQGAANVLSGLFGGMGGCAMIGQTMINVKVSGARTRISTFLAGVFLLVLVVVLGDVVAVIPMAALVAVMVMVSVGTFDWHSIRPSTLKRMPLGETLVMVLTVAVVVATHNLAIGVVVGVIAAMVVFARRVARFATVERAVVTHADGEATAEYRVVGELFFASSNDLTTQFRYAEDPTRVRIDMSGSHVWDASTVAALDAITTKYARRGTAVEIHGMNDASLRMHGRLAGRLGGEG
>NZ_CP048049.1|WP_053775544.1|3022339_3023524_-|glycosyltransferase
MRIAFVSLHTSPIQEPSTGDAGGLNVYLLELARSLGRQGHEVRLITRATDPADPPTMRVAPGVELLALRAGPVGPVPKEELPGITDAFAAALAALPPADVVHSHYWLSAVAALPVARAWGVPHVLTLHSVSAGKNRRLVPGDTPEPEERLADEARLVRASDLVVASAESERRLLVEAYDADPATVHVVAPGVEEAFLREPSGRGGGGRVRVVLLGRIQPLKGQDVALRALALLDPATRPLLVIAGGVSPGRDAYAAGLHALVRSLGLEDDVVFVGALDRAATARTLAGAHLALMPSAAETYGLVALEAAACGTPVVASRTEGLVDSVREGVSGVFVATRDPADWARAIRDLLADGPALARLSASAREHAAGRTWDVAAADVAEEYRLLRERADR
>NZ_CP048049.1|WP_053775543.1|3021163_3022285_+|glycerate-kinase
MSTAAPRPLRVVMAPDSLTGSATAVEAARALRRGWLRARPADDVVIAPMADGGQGTLDVLAAAVPGARRVPVRVTGPDDRPVDAHWLLLPDGTGAVEVASTSGITLLDPLRPLTAHTRGFGQAIRAALDAGVPRLLLALGGSSSTDGGVGALRELGARVVRADGSPAGDGGGALAGIAVLDLAGLHALPAGGARILGDVDAPLTGPAGAAAVYGPQKGATPAHVRALDAGLAHLAALLDIDPATPGSGAAGGTAAGLAAWGALPTSGSAGVAEAIGLAGLVAGADVVVTGEGRFDAQSRTGKVASRVLDLAREHGARAILVAGAIAVPTDGFAAARSLTELAGSADAARADAAAWLERAAEDVARDHLATRAS
>NZ_CP048049.1|WP_081001914.1|3020229_3021114_+|ROK-family-protein
MPQPETAPRPASDGGRATAGFIPVDRAVVAAPEGAEAALAHRDRLALGIDIGGTTLKAGIVDVTTGIRLTERMTVGKPVGGEPEDIADVIAEIVLELTPDEDLPVGVGVPGIVRDGIVRSSAHISDRWLGMDARTAIRERSGIDVLTVNDADAAGVAELEYGVLQGRGGLVILTTLGTGIGTALLHDGTLIPNSELGHVHIDGGDYEMQAAFSAVRREGLTFEVWAARLERYYRHLESIMSPDLIVVGGAAAHEFARFSGFLHLDTEIIAASRGNDAGLVGAALLAHRTGVAPD
>NZ_CP048049.1|WP_053775542.1|3019191_3019848_-|hypothetical-protein
MSEDELTFRAAYWPVLLLRALPALALAAFITFSSDHSPALGLVAFGAFAIVSGLITAGLGARALRGPAARIRTSAIVQGALTVVAGVAALLARDGGVLVLLYVVSVWAAITGFLELVSGLRSRGRVPGATDAITAGALTVVLAVAFLLVPPDLLVQYGGVEQREGQLTAPVVAVGLLGAYAAIVGVFLVIAALSMKWGTSTPTATSAADAPRTTESAS
>NZ_CP048049.1|WP_043668444.1|3018919_3019189_-|hypothetical-protein
MTSDIRKDRMRPAELLGIAAALAAFVGLIVALSTRPGDAQSWTVVVVFTGVAFIGALVMLAMLALSFKPNRDELQDMDEQDHPDRPTRH
>NZ_CP048049.1|WP_053775541.1|3017454_3018837_+|adenylosuccinate-lyase
MSPLPPQVLSPLDGRYAPVVTELGEHLSEAGLNRARIHVEVEWLIHLTDRSLLSSSPFTEEQKAALRRVVAEFGQEQIDALARVEAVTRHDVKAVEYFVRDRLAELGLGHVAELTHFACTSEDINNLSYALVIDRAVREVWLPKLVSVIGALRERALLFRDDAMLSRTHGQPATPTTLGKELAVFVHRLERLRADVEDVEVLGKFSGATGTFAAHLAADADVDWPAESRAFVTGLGLVWNPLTTQIESHDWQAELYTRIAHVNRVLHNLCTDVWTYISMGYFRQIPQAGATGSSTMPHKINPIRFENAEANLELSNAFLDSLSSTLVTSRLQRDLTDSTTQRNVGVALGHSLLALDNIGRGLLEIDVDRALLASDLDANWEVLGEAIQTVIRAEIVAGRSSISDPYAVLKELTRGKRVGRDDMRAFVSGLDIGDAAKARLLELTPAGYAGLASQLVDRIL
>NZ_CP048049.1|WP_053775540.1|3016913_3017441_+|low-molecular-weight-phosphotyrosine-protein-phosphatase
MGAPESPVTTAPPVFRIAFVCTGNICRSPMAEVVFRDLVRRAGHADRVWVTSAGTGDWHVGEQADARTLAALERVGLSGSAHRAKQFDPDTLPDLDLVVVFDRGQERTLRQWARTEADRAKIHLLLSFDPPQAHLRDVPDPYYTDAAMFDRVLGMIDRAARALLTQVEPGIRPPS
>NZ_CP048049.1|WP_157883574.1|3027541_3027853_+|hypothetical-protein
MVVFGPAIDDETRCVHYGSALDVVALRAPCCDAWYPCHLCHAAVADHPLEVIPRAQQHLPAALCGVCRATMSVSDYLAADSCPGCGAAFNPGCAAHAHLYFAP
>NZ_CP048049.1|WP_053775548.1|3027975_3029355_-|replicative-DNA-helicase
MSIAHLGLAGERDERDKRAGHERTPPHDLLAEQSAIGGMLLSKDAVADAVEQVRAIDFYIPKHEIIFDAILSLYSHGEPTDVIAVTDELTKLGELTRAGGADYLHTLTSVVPTAANAGFYASIVAEKAVLRRLVEAGTRIVQMGYASEGEVVDLVNNAQAEIYGVTGGVEAEDYVPLTDAVTVAIDEIEAAKGKDGQMTGVPTGFADLDALTNGLHPGQLIIVAARPALGKSTLALDFARAASIKYDMPSIFFSLEMGRSEIAMRLLSAEASVPLQSMRKGTVDARDWTTIAQTRGRINDAPLYIDDSPNMTLVEIRAKCRRLKQKVGLKLVVIDYLQLMTSGKKVESRQQEVSEFSRALKLMAKELQVPVIALSQLNRGPEQRADKMPAISDLRESGSLEQDADMVILLHRESAYEKDNPRAGEADFIVAKHRNGPTGTITVGFHGHFSRFADMPAGG
>NZ_CP048049.1|WP_012039647.1|3029808_3030261_-|50S-ribosomal-protein-L9
MSKVILTTEVSGLGSPGDVVEVKNGFSRNYLVPQGFAVIWSRGGEKQIEQIKAARAAREHATIEEAQDLKSRLEAKIVKLTVKAGQGGRLFGSVKTSDIAKAVEESGIGQVDKRKIEIPNAIKATGNHEATIRLRDDIVATISLQVVAAK
>NZ_CP048049.1|WP_012039648.1|3030272_3030536_-|30S-ribosomal-protein-S18
MAGKSSGDRRKPLRGAKGGKNAAPAKSIRVGVIDYKDVATLRKFISERGKIRARRITGVSVQEQRLIARAVKNAREMALLPYAGSGR
>NZ_CP048049.1|WP_043667767.1|3030572_3031118_-|single-stranded-DNA-binding-protein
MAGETIITVVGNLTSDPELRYTQNGLAVANFTIASTPRSFDRASNDWKDGDALFLRASVWREFAEHVASSLTKGSRVVATGRLKQRSYETKEGEKRTSIELEVDEIGPSLRYATAQVTRASGGGNGGGNSGGGNRGQFGGGQPQQQVAEEPWGTPASNSGGGSGGDGGWSNPGNFNDETPF
>NZ_CP048049.1|WP_043667765.1|3031121_3031586_-|30S-ribosomal-protein-S6
MTHQYELMVILDPEIDERTVAPSLDKFLNVIRTSGGTVDNVDVWGRRRLAYEINKKNEGIYAVVQLTATSEATQELDRQLGLSEAVMRTKVLRAEEAMAMVASAAKLADEKAARKAAATSKAADAAPQAPATDAAPATPGKPAAQAASSEKTGE
>NZ_CP048049.1|WP_053775549.1|3031749_3033180_-|CCA-tRNA-nucleotidyltransferase
MHSVAQALERLRELAASPPVAVLARAFHEAGHELALVGGPVRDAFLGRAATDLDLTTDARPDRILEIVEPVADAHWDIGRAFGTIGARVKGEQVEITTYRTDQYDGVSRKPEVEFGSSLDEDLVRRDFTVNALAVRLPQVVLVDPSNGIDDLLSQVLRTPVAPEVSFGDDPLRMMRAVRFASQLGFRLDDAALAAIRDMAPRILDISVERVSDELSKLLRTPEPRAGLDLLVEGGLAEHVLPELPAMKLEADEHHRHKDVYQHSLQVLDQAIDHERSRHPGEAPDLVLRLAALLHDIGKPSTRRLEPGGVVTFHHHDVVGSKMAKRRLRALRFDNDTIASVARLIELHLRFFGYTEGGWTDSAVRRYVRDAGPELERLHMLTRADVTTQNRRKADRLGFAYDDLEARIAELAEQEEMAAVRPDLDGEAIMRILDVPPGPVVGRAYRFLLELRLDEGPLPAEEAERRLVAWWAAEQA
>NZ_CP048049.1|WP_053775550.1|3033273_3035568_+|hypothetical-protein
MHAAPRHDAGPTRTDRALRLIRRSARRTISTLVCVTVAAGTLAAGTVAGPSTPAHAATEGVTLTVTPAAQGILKPGEDLAVTVSVVNATDAAVPAGRIDLDLNRTVLDTRTRLDGWLDTASTDANARTGPRIGRADSPEVPAGGTVDVPVTVPAATVALQGSRGGFGPRGITAELEAGGADVATGRGAVVWSPGADPAPTPVTAVMPLTVPPSGSDFVDAEALATYTSPSGTLTRQLDAVVDRPVAVGIDPRIIASIRILGVQAPPSAVEWLQRLRTMPNETFELAWADADVAVQSQAGATTLLAPTDTTYAVQASRFAAPGSTPSPTPSSTGTPAPTGTPAAGGTRGGSGASGAASASVDPAETAEPTSPEPSPTPTAPSPSPTPTLADLTAWTYTMPGFSWPAAGTVTANDIGVLAASGSTTAILASGDVRSTGTARVGATGTVGDTRVLVTDAQVSALVDRALSAETDEAFGIALAQLSATLAADAREADGHVVVAGLERGWAASNGRLGELLDAIQALPYSDTAPLTSALGSASVPLQVVDHPEDADRVNRVAGSLSLEAQVAAFSKAVERPELITGQQRLLLLATLSNRWRDDADGAVTVQDGYIAQADAILSSVAITTRQNTVISDTSSLLINVSNALDQPVTVRMTIIAGSGRIRVDDSVVVTVPAHGSASARPPITSISNGDLVVTARLTTEDGSVQIGDSAPVELLIRAGFEAVVTTLFVVAVALLFGFGLFRSIRKRRRARARQLAGLPEETDD
>NZ_CP048049.1|WP_167441259.1|3035604_3037233_+|murein-biosynthesis-integral-membrane-protein-MurJ
MTAAPAPRGGIGRASALLASGTFVSRILGFVKAIVLLQTIGATLGSSNAFSNANQLPNNIYVIIAGGVLNAVLVPQVVRAAKHADGGAGYINKLVTIAIVVLGGVTVLATVGAPVVSRLYAATLPPDVFALVVAFAYWCLPQILFYGLYAVLGEVLNARGSFGPFTWAPVLNNVVAIAGLLLFQAMFGSGSRPVDDWSLDKIIVLAGSATLGVVAQALILFVFWRRVGLRFRFDFAWRGVGLGTAGRLAGWTFGMLVVTQLAGIAQSNVANIAATSDSPSSTILLNAWLFFMLPHSIFAVSIATAYFTRMSTHAGEGDHDSMRTDLSSAIRTVALMTVLSTALIAVLAGPVARVMVSGDIGEVRGYGVVLIAFILGLPAFSTLFVLQRAFYALSDTRTPFLIQCAQVVVFIAGALVISQQPVELIGVGLAVLQTVTVTGQALLAAVVLRRRIGRIDGRRILRSAVRFAVAAVPAALIGNALLALISGGPFEGVGVASKGSALLVGIAVAAVMTAVYLAALAAMRSSELQQLTGPVLRRIRRR
>NZ_CP048049.1|WP_053775552.1|3037390_3038425_+|thioredoxin-disulfide-reductase
MRQIIIIGSGPAGYTAAIYAARANLTPLLIASSVEAGGELMNTTEVENYPGFPEGIQGPDLMMAMQAQAERFGTEVVLDDVTSVDLTGDVKRVTLGNGDVHEALAVIAATGSAYRKLGLPAEDRFSGHGVSWCATCDGFFFRQKTIAVVGGGDSAMEEATFLTRFAEKVYVIHRKDTLRASKIMQERAFENPKIEFVWNAQVVDITGGEKVDGVVLEDTVTGEQRPLALDGLFIAIGNDPRTHLFHQQLELTAEGTIAVEGRSSRTNLPGVFAAGDVIDPTYRQAITAAASGTVAALDAEHFLASLPDTLLDAASDGPDGPAGHGAPAAGSAVDPDGELVGAEQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP048049_1	1.1\|2695870\|21\|NZ_CP048049\|CRISPRCasFinder	2695870-2695890	21	NZ_CP048049.1	315326-315346	2	0.905
NZ_CP048049_1	1.1\|2695870\|21\|NZ_CP048049\|CRISPRCasFinder	2695870-2695890	21	NZ_CP048049.1	855238-855258	2	0.905
NZ_CP048049_1	1.1\|2695870\|21\|NZ_CP048049\|CRISPRCasFinder	2695870-2695890	21	NZ_CP048049.1	2354889-2354909	2	0.905
NZ_CP048049_1	1.1\|2695870\|21\|NZ_CP048049\|CRISPRCasFinder	2695870-2695890	21	NZ_CP048049.1	2812846-2812866	2	0.905
NZ_CP048049_1	1.3\|2695960\|21\|NZ_CP048049\|CRISPRCasFinder	2695960-2695980	21	NZ_CP048049.1	1005701-1005721	2	0.905

1. spacer 1.1|2695870|21|NZ_CP048049|CRISPRCasFinder matches to position: 315326-315346, mismatch: 2, identity: 0.905

cgctcgcgggcgtcggcctca	CRISPR spacer
cgctcgtgagcgtcggcctca	Protospacer
******.*.************

2. spacer 1.1|2695870|21|NZ_CP048049|CRISPRCasFinder matches to position: 855238-855258, mismatch: 2, identity: 0.905

cgctcgcgggcgtcggcctca	CRISPR spacer
cgctcgcgggcttcgccctca	Protospacer
*********** *** *****

3. spacer 1.1|2695870|21|NZ_CP048049|CRISPRCasFinder matches to position: 2354889-2354909, mismatch: 2, identity: 0.905

cgctcgcgggcgtcggcctca	CRISPR spacer
cgcccgcgggcggcggcctca	Protospacer
***.******** ********

4. spacer 1.1|2695870|21|NZ_CP048049|CRISPRCasFinder matches to position: 2812846-2812866, mismatch: 2, identity: 0.905

cgctcgcgggcgtcggcctca	CRISPR spacer
cgctcgcgggcctcggccgca	Protospacer
*********** ****** **

5. spacer 1.3|2695960|21|NZ_CP048049|CRISPRCasFinder matches to position: 1005701-1005721, mismatch: 2, identity: 0.905

acctcgcgggcctccgcctcg	CRISPR spacer
acctcgcgggccgccgcgtcg	Protospacer
************ **** ***

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP048049_1	1.3\|2695960\|21\|NZ_CP048049\|CRISPRCasFinder	2695960-2695980	21	NZ_CP025552	Streptomyces rimosus strain WT5260 plasmid unnamed, complete sequence	259024-259044	0	1.0
NZ_CP048049_1	1.1\|2695870\|21\|NZ_CP048049\|CRISPRCasFinder	2695870-2695890	21	MG941013	Actinomyces phage xhp1, complete genome	17618-17638	1	0.952
NZ_CP048049_1	1.2\|2695915\|21\|NZ_CP048049\|CRISPRCasFinder	2695915-2695935	21	NZ_CP042264	Litoreibacter sp. LN3S51 plasmid unnamed3, complete sequence	22518-22538	1	0.952
NZ_CP048049_1	1.2\|2695915\|21\|NZ_CP048049\|CRISPRCasFinder	2695915-2695935	21	MH045567	Microbacterium phage Elva, complete genome	8033-8053	1	0.952
NZ_CP048049_1	1.3\|2695960\|21\|NZ_CP048049\|CRISPRCasFinder	2695960-2695980	21	NZ_CP016083	Streptomyces sp. SAT1 plasmid unnamed3, complete sequence	508734-508754	1	0.952
NZ_CP048049_1	1.3\|2695960\|21\|NZ_CP048049\|CRISPRCasFinder	2695960-2695980	21	NC_020894	Streptomyces hygroscopicus subsp. jinggangensis TL01 plasmid pSHJGH1, complete sequence	133667-133687	1	0.952
NZ_CP048049_1	1.3\|2695960\|21\|NZ_CP048049\|CRISPRCasFinder	2695960-2695980	21	NC_017766	Streptomyces hygroscopicus subsp. jinggangensis 5008 plasmid pSHJG1, complete sequence	133668-133688	1	0.952
NZ_CP048049_1	1.3\|2695960\|21\|NZ_CP048049\|CRISPRCasFinder	2695960-2695980	21	MT701594	Streptomyces phage Spernnie, complete genome	40898-40918	1	0.952
NZ_CP048049_1	1.3\|2695960\|21\|NZ_CP048049\|CRISPRCasFinder	2695960-2695980	21	MK937606	Microbacterium phage Margaery, complete genome	35805-35825	1	0.952
NZ_CP048049_1	1.3\|2695960\|21\|NZ_CP048049\|CRISPRCasFinder	2695960-2695980	21	MK937591	Microbacterium phage Cinna, complete genome	36576-36596	1	0.952
NZ_CP048049_2	2.1\|3027471\|29\|NZ_CP048049\|CRISPRCasFinder	3027471-3027499	29	NC_013208	Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 plasmid pAACI03, complete sequence	4745-4773	8	0.724

1. spacer 1.3|2695960|21|NZ_CP048049|CRISPRCasFinder matches to NZ_CP025552 (Streptomyces rimosus strain WT5260 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

acctcgcgggcctccgcctcg	CRISPR spacer
acctcgcgggcctccgcctcg	Protospacer
*********************

2. spacer 1.1|2695870|21|NZ_CP048049|CRISPRCasFinder matches to MG941013 (Actinomyces phage xhp1, complete genome) position: , mismatch: 1, identity: 0.952

cgctcgcgggcgtcggcctca	CRISPR spacer
cgctcgcgggcgtgggcctca	Protospacer
************* *******

3. spacer 1.2|2695915|21|NZ_CP048049|CRISPRCasFinder matches to NZ_CP042264 (Litoreibacter sp. LN3S51 plasmid unnamed3, complete sequence) position: , mismatch: 1, identity: 0.952

cggtcctcgacgtcgcgctgg	CRISPR spacer
cggtcatcgacgtcgcgctgg	Protospacer
***** ***************

4. spacer 1.2|2695915|21|NZ_CP048049|CRISPRCasFinder matches to MH045567 (Microbacterium phage Elva, complete genome) position: , mismatch: 1, identity: 0.952

cggtcctcgacgtcgcgctgg	CRISPR spacer
cggtcctcgaggtcgcgctgg	Protospacer
********** **********

5. spacer 1.3|2695960|21|NZ_CP048049|CRISPRCasFinder matches to NZ_CP016083 (Streptomyces sp. SAT1 plasmid unnamed3, complete sequence) position: , mismatch: 1, identity: 0.952

acctcgcgggcctccgcctcg	CRISPR spacer
acctcgcgggcctcggcctcg	Protospacer
************** ******

6. spacer 1.3|2695960|21|NZ_CP048049|CRISPRCasFinder matches to NC_020894 (Streptomyces hygroscopicus subsp. jinggangensis TL01 plasmid pSHJGH1, complete sequence) position: , mismatch: 1, identity: 0.952

acctcgcgggcctccgcctcg	CRISPR spacer
acctcgcgggcctccgcatcg	Protospacer
***************** ***

7. spacer 1.3|2695960|21|NZ_CP048049|CRISPRCasFinder matches to NC_017766 (Streptomyces hygroscopicus subsp. jinggangensis 5008 plasmid pSHJG1, complete sequence) position: , mismatch: 1, identity: 0.952

acctcgcgggcctccgcctcg	CRISPR spacer
acctcgcgggcctccgcatcg	Protospacer
***************** ***

8. spacer 1.3|2695960|21|NZ_CP048049|CRISPRCasFinder matches to MT701594 (Streptomyces phage Spernnie, complete genome) position: , mismatch: 1, identity: 0.952

acctcgcgggcctccgcctcg	CRISPR spacer
acctcgccggcctccgcctcg	Protospacer
******* *************

9. spacer 1.3|2695960|21|NZ_CP048049|CRISPRCasFinder matches to MK937606 (Microbacterium phage Margaery, complete genome) position: , mismatch: 1, identity: 0.952

acctcgcgggcctccgcctcg	CRISPR spacer
acctcgcgggcctcctcctcg	Protospacer
*************** *****

10. spacer 1.3|2695960|21|NZ_CP048049|CRISPRCasFinder matches to MK937591 (Microbacterium phage Cinna, complete genome) position: , mismatch: 1, identity: 0.952

acctcgcgggcctccgcctcg	CRISPR spacer
acctcgcgggcctcctcctcg	Protospacer
*************** *****

11. spacer 2.1|3027471|29|NZ_CP048049|CRISPRCasFinder matches to NC_013208 (Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 plasmid pAACI03, complete sequence) position: , mismatch: 8, identity: 0.724

aggtccgtccccgtgcacagcggaatgca	CRISPR spacer
gaacccgtcccggtggacagcggaatgtg	Protospacer
....******* *** ***********..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

760107 : 771204

Gordonia_phage(11.11%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_053773844.1\|760107_761271_+	acyltransferase	A0A142KBN9	Gordonia_phage	1.3e-70	41.7
WP_053773845.1\|761317_761851_+	O-acetyl-ADP-ribose deacetylase	F1SVT2	Red_sea_bream_iridovirus	1.7e-28	49.7
WP_053775653.1\|762665_763961_+	peptidoglycan DD-metalloendopeptidase family protein	G9BW84	Planktothrix_phage	2.1e-16	48.3
WP_167441164.1\|763974_765333_+	C40 family peptidase	A0A0A8WIF2	Clostridium_phage	1.1e-10	42.9
WP_053773846.1\|765416_765938_-	inorganic diphosphatase	A0A2H4J8U1	uncultured_Caudovirales_phage	6.9e-35	51.0
WP_053773847.1\|765992_767018_+\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_086526996.1\|767019_767571_+	hypoxanthine phosphoribosyltransferase	A0A1V0SEQ1	Hokovirus	2.0e-08	31.5
WP_053773849.1\|767729_769730_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	E5EQ50	Micromonas_sp._RCC1109_virus	2.2e-105	45.6
WP_053773850.1\|769735_770326_+	GTP cyclohydrolase I	E7DN69	Pneumococcus_phage	5.0e-34	45.6
WP_053775654.1\|770361_771204_+	dihydropteroate synthase	S4VNV0	Pandoravirus	2.7e-25	34.9

DBSCAN-SWA_2

947124 : 954012

Escherichia_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_081001837.1\|947124_948264_-	glycosyltransferase family 4 protein	J7Q7I8	Aeropyrum_coil-shaped_virus	1.9e-05	28.6
WP_053773981.1\|948355_949102_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.5e-11	26.9
WP_080754849.1\|949085_949955_-	ABC transporter permease	NA	NA	NA	NA
WP_053773982.1\|950049_950904_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	6.0e-28	37.6
WP_053773983.1\|950900_951890_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	5.4e-73	42.2
WP_053773984.1\|952061_952514_+	GtrA family protein	NA	NA	NA	NA
WP_053773985.1\|952539_953145_+	dTDP-4-dehydrorhamnose 3,5-epimerase family protein	A0A1D7XFA9	Escherichia_phage	2.3e-26	38.1
WP_053773986.1\|953148_954012_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	7.5e-95	59.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP048049

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection