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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP044353 Xylella fastidiosa strain ATCC 35879 plasmid pXF879-41, complete sequence 0 crisprs c2c9_V-U4 0 0 0 0
NZ_CP044352 Xylella fastidiosa strain ATCC 35879 chromosome, complete genome 1 crisprs DEDDh,csa3,WYL,Cas9_archaeal,c2c8_V-U2 0 1 9 0

Results visualization

1. NZ_CP044352
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP044352_1 940689-940764 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP044352_1 1.1|940713|28|NZ_CP044352|CRISPRCasFinder 940713-940740 28 NZ_CP043499 Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence 1189006-1189033 6 0.786
NZ_CP044352_1 1.1|940713|28|NZ_CP044352|CRISPRCasFinder 940713-940740 28 NZ_CP011248 Agrobacterium tumefaciens strain Ach5 plasmid pAt, complete sequence 503612-503639 6 0.786
NZ_CP044352_1 1.1|940713|28|NZ_CP044352|CRISPRCasFinder 940713-940740 28 NZ_CP032919 Agrobacterium tumefaciens strain 15955 plasmid pAt15955, complete sequence 774323-774350 6 0.786
NZ_CP044352_1 1.1|940713|28|NZ_CP044352|CRISPRCasFinder 940713-940740 28 NZ_CP033029 Agrobacterium tumefaciens strain A6 plasmid pAtA6, complete sequence 774405-774432 6 0.786
NZ_CP044352_1 1.1|940713|28|NZ_CP044352|CRISPRCasFinder 940713-940740 28 NZ_AP022319 Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence 80931-80958 7 0.75

1. spacer 1.1|940713|28|NZ_CP044352|CRISPRCasFinder matches to NZ_CP043499 (Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.786

gtccagacctggaacgagcaacggcggg	CRISPR spacer
ttccagacctggaacgagcgactacgcc	Protospacer
 ******************.** .**  

2. spacer 1.1|940713|28|NZ_CP044352|CRISPRCasFinder matches to NZ_CP011248 (Agrobacterium tumefaciens strain Ach5 plasmid pAt, complete sequence) position: , mismatch: 6, identity: 0.786

gtccagacctggaacgagcaacggcggg	CRISPR spacer
atctttccctggaacgagcaacggctgg	Protospacer
.**.   ****************** **

3. spacer 1.1|940713|28|NZ_CP044352|CRISPRCasFinder matches to NZ_CP032919 (Agrobacterium tumefaciens strain 15955 plasmid pAt15955, complete sequence) position: , mismatch: 6, identity: 0.786

gtccagacctggaacgagcaacggcggg	CRISPR spacer
atctttccctggaacgagcaacggctgg	Protospacer
.**.   ****************** **

4. spacer 1.1|940713|28|NZ_CP044352|CRISPRCasFinder matches to NZ_CP033029 (Agrobacterium tumefaciens strain A6 plasmid pAtA6, complete sequence) position: , mismatch: 6, identity: 0.786

gtccagacctggaacgagcaacggcggg	CRISPR spacer
atctttccctggaacgagcaacggctgg	Protospacer
.**.   ****************** **

5. spacer 1.1|940713|28|NZ_CP044352|CRISPRCasFinder matches to NZ_AP022319 (Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence) position: , mismatch: 7, identity: 0.75

gtccagacctggaacgagcaacggcggg	CRISPR spacer
cgccagacctggaacgagccacgttccg	Protospacer
  ***************** *** .  *

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 419978 : 468667 55 Xylella_phage(23.81%) capsid,protease,tail,integrase,portal,plate attL 450563:450577|attR 475930:475944
DBSCAN-SWA_2 764001 : 778123 15 Xylella_phage(76.92%) integrase attL 756357:756371|attR 768739:768753
DBSCAN-SWA_3 1223913 : 1229744 10 Xylella_phage(33.33%) NA NA
DBSCAN-SWA_4 1406556 : 1415265 9 Xylella_phage(75.0%) integrase attL 1402500:1402513|attR 1412757:1412770
DBSCAN-SWA_5 1418847 : 1427649 12 Aggregatibacter_phage(25.0%) tail NA
DBSCAN-SWA_6 1472577 : 1565123 102 Xylella_phage(40.0%) capsid,protease,tail,integrase,plate,terminase,tRNA attL 1470716:1470731|attR 1482619:1482634
DBSCAN-SWA_7 1870139 : 1876196 9 Stenotrophomonas_phage(50.0%) NA NA
DBSCAN-SWA_8 1903205 : 1943915 64 Xylella_phage(17.5%) terminase,tail,integrase,head attL 1893423:1893450|attR 1946564:1946591
DBSCAN-SWA_9 2002132 : 2062352 71 Xylella_phage(40.0%) capsid,tail,integrase,portal,plate attL 1994168:1994183|attR 2068698:2068713
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage